Package de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath

Class TranspathMolecule

java.lang.Object

de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathEntity

de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathMolecule

All Implemented Interfaces:

TranspathEntityType

public class TranspathMolecule
extends TranspathEntity

Field Summary

Fields

Modifier and Type	Field	Description
String	ALIASES
String	CATALYZES
String	CLASS
String	COMMENT
String	ENSEMBLID
String	ENTREZGENEID
String	FIRST
String	GENBANKID
String	GOACCESSION
String	GODESCRIPTION
String	GOTYPE
String	ID
String	INHIBITS
String	INTERPRODESCRIPTION
String	INTERPROID
String	LAST
String	NAME
String	OMIMID
String	OTHERACCESION
String	OTHERGENOMICACCESION
String	PDBID
String	PFAMID
String	PIRID
String	PROSITEID
String	REFERENCE
String	REFSEQID
String	REFSEQPID
String	RKIN
String	RKOUT
String	SUBFAMILY
String	SUPERFAMILY
String	TYPE
String	UNIGENEID
String	UNIPROTACCESSION

Constructor Summary

Constructors

Constructor	Description
TranspathMolecule()

Method Summary

Modifier and Type	Method	Description
static void	connectMoleculeNodes(Graph g, Node moleculeNode1, Node moleculeNode2)
Node	getGraphNode(Graph g, String clusterID, HashMap<String,Node> graphElementId2graphNode)
String	getKey()
String	getXMLstartEndEntity()

Methods inherited from class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathEntity

printTodo, processXMLentityValue

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

ID

public String ID

NAME

public String NAME

ALIASES

public String ALIASES

TYPE

public String TYPE

FIRST

public String FIRST

LAST

public String LAST

CLASS

public String CLASS

SUPERFAMILY

public String SUPERFAMILY

SUBFAMILY

public String SUBFAMILY

RKOUT

public String RKOUT

RKIN

public String RKIN

CATALYZES

public String CATALYZES

INHIBITS

public String INHIBITS

COMMENT

public String COMMENT

REFERENCE

public String REFERENCE

GENBANKID

public String GENBANKID

ENSEMBLID

public String ENSEMBLID

ENTREZGENEID

public String ENTREZGENEID

INTERPRODESCRIPTION

public String INTERPRODESCRIPTION

INTERPROID

public String INTERPROID

OMIMID

public String OMIMID

PDBID

public String PDBID

PFAMID

public String PFAMID

PIRID

public String PIRID

PROSITEID

public String PROSITEID

REFSEQID

public String REFSEQID

REFSEQPID

public String REFSEQPID

UNIGENEID

public String UNIGENEID

UNIPROTACCESSION

public String UNIPROTACCESSION

GOTYPE

public String GOTYPE

GODESCRIPTION

public String GODESCRIPTION

GOACCESSION

public String GOACCESSION

OTHERACCESION

public String OTHERACCESION

OTHERGENOMICACCESION

public String OTHERGENOMICACCESION

Constructor Details

TranspathMolecule

public TranspathMolecule()

Method Details

getKey

public String getKey()

getGraphNode

public Node getGraphNode(Graph g,
String clusterID,
HashMap<String,Node> graphElementId2graphNode)

connectMoleculeNodes

public static void connectMoleculeNodes(Graph g,
Node moleculeNode1,
Node moleculeNode2)

getXMLstartEndEntity

public String getXMLstartEndEntity()