Package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go

Class InterpreteGOtermsAlgorithm

java.lang.Object

org.graffiti.plugin.algorithm.AbstractAlgorithm

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.InterpreteGOtermsAlgorithm

All Implemented Interfaces:

UndoableEdit, Algorithm

public class InterpreteGOtermsAlgorithm
extends AbstractAlgorithm

Author:

Christian Klukas (c) 2006 IPK Gatersleben, Group Network Analysis

Constructor Summary

Constructors

Constructor	Description
InterpreteGOtermsAlgorithm()

Method Summary

Modifier and Type	Method	Description
void	execute()	Executes the whole algorithm.
String	getCategory()	Returns the category an algorithm should assigned to.
String	getDescription()	The algorithm description.
String	getName()	Returns the name (ID) of the algorithm.
Parameter[]	getParameters()	Returns a list of Parameter that are set for this algorithm.
static Node	processGoHierarchy(PositionGridGenerator pgg, HashMap<String,Node> goTerm2goNode, GoProcessing gp, String goTerm, Graph g)
void	setParameters(Parameter[] params)	Sets the parameters for this algorithm.

Methods inherited from class org.graffiti.plugin.algorithm.AbstractAlgorithm

addEdit, attach, canRedo, canUndo, check, die, doesUndo, getAcceleratorKeyStroke, getActionEvent, getMenuCategory, getPresentationName, getRedoPresentationName, getSetCategory, getUndoPresentationName, isAlwaysExecutable, isLayoutAlgorithm, isSignificant, markExecutionDone, markRedoDone, markUndoDone, mayWorkOnMultipleGraphs, redo, replaceEdit, reset, setActionEvent, showMenuIcon, undo

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

InterpreteGOtermsAlgorithm

public InterpreteGOtermsAlgorithm()

Method Details

getName

public String getName()

Description copied from interface: Algorithm

Returns the name (ID) of the algorithm.

Returns:

DOCUMENT ME!

getCategory

public String getCategory()

Description copied from interface: Algorithm

Returns the category an algorithm should assigned to. Return NULL if the algorithm should be sorted directly in the plugin menu.

Specified by:

getCategory in interface Algorithm

Overrides:

getCategory in class AbstractAlgorithm

Returns:

The category an algorithm should assigned to.

getDescription

public String getDescription()

Description copied from class: AbstractAlgorithm

The algorithm description.

Specified by:

getDescription in interface Algorithm

Overrides:

getDescription in class AbstractAlgorithm

Returns:

String, could be HTML-styled.

getParameters

public Parameter[] getParameters()

Description copied from interface: Algorithm

Returns a list of Parameter that are set for this algorithm.

Specified by:

getParameters in interface Algorithm

Overrides:

getParameters in class AbstractAlgorithm

Returns:

a collection of Parameter that are needed by the Algorithm.

setParameters

public void setParameters(Parameter[] params)

Description copied from interface: Algorithm

Sets the parameters for this algorithm. Must have the same types and order as the array returned by getParameter.

Specified by:

setParameters in interface Algorithm

Overrides:

setParameters in class AbstractAlgorithm

Parameters:

params - Parameter array

execute

public void execute()

Description copied from interface: Algorithm

Executes the whole algorithm.

processGoHierarchy

public static Node processGoHierarchy(PositionGridGenerator pgg,
HashMap<String,Node> goTerm2goNode,
GoProcessing gp,
String goTerm,
Graph g)