Package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg

Class KeggHelper

java.lang.Object
de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggHelper
All Implemented Interfaces:
HelperClass
public class KeggHelper
extends Object
implements HelperClass
HTML Parser
Version:
$Revision$
Author:
Christian Klukas

  • Constructor Details

    • KeggHelper

      public KeggHelper()

  • Method Details

    • getKeggElmentsOfMap

      public static keggapi.PathwayElement[] getKeggElmentsOfMap​(String pathwayId)

    • getKeggEnzymesOfMap

      public static String[] getKeggEnzymesOfMap​(String pathwayId)

    • getKeggKOsOfMap

      public static String[] getKeggKOsOfMap​(String pathwayId)

    • getKeggEnzymesByReactionId

      public static String[] getKeggEnzymesByReactionId​(String reactionId)

    • getKeggReactionsOfMap

      public static String[] getKeggReactionsOfMap​(String pathwayId)

    • callKeggDBGETbfind

      public static String callKeggDBGETbfind​(String search)

    • callKeggDBGETbget

      public static String callKeggDBGETbget​(String search)

    • callKeggDBGETbtit

      public static String callKeggDBGETbtit​(String search)

    • callKeggDBGETbinfo

      public static String callKeggDBGETbinfo​(String search)

    • getKeggCompoundsOfMap

      public static String[] getKeggCompoundsOfMap​(String pathwayId)

    • getKeggGenesOfMap

      public static String[] getKeggGenesOfMap​(String pathwayId)

    • getOrganisms

      public List<OrganismEntry> getOrganisms() throws IOException, javax.xml.rpc.ServiceException
      Throws:
      IOException
      javax.xml.rpc.ServiceException

    • getLinkedPathwayIDs

      public Collection<String> getLinkedPathwayIDs​(String pathway_id) throws IOException, javax.xml.rpc.ServiceException
      Throws:
      IOException
      javax.xml.rpc.ServiceException

    • isEnzymeNode

      public static boolean isEnzymeNode​(Node n)

    • isMapNode

      public static boolean isMapNode​(Node n)

    • getKeggId

      public static String getKeggId​(Node n)

    • isMapTitleNode

      public static boolean isMapTitleNode​(Node n)

    • setKgmlVersion

      public static void setKgmlVersion​(String kgmlVersion)

    • getKgmlVersion

      public static String getKgmlVersion()

    • getKGMLversionSelectionCombobox

      public static JComponent getKGMLversionSelectionCombobox()