Package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml

Class SBML_SBase_Writer

java.lang.Object

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_SBase_Writer

Direct Known Subclasses:

SBML_Compartment_Writer, SBML_Constraint_Writer, SBML_Event_Writer, SBML_FunctionDefinition_Writer, SBML_InitialAssignment_Writer, SBML_Model_Writer, SBML_Parameter_Writer, SBML_Reaction_Writer, SBML_Rule_Writer, SBML_SBML_Writer, SBML_Species_Writer, SBML_UnitDefinition_Writer

public class SBML_SBase_Writer
extends Object

Field Summary

Fields

Modifier and Type	Field	Description
String	ATT	To make the code shorter

Constructor Summary

Constructors

Constructor	Description
SBML_SBase_Writer()

Method Summary

Modifier and Type	Method	Description
void	addSBaseAttributes(org.sbml.jsbml.AbstractSBase sbase, Edge e, String niceID)
void	addSBaseAttributes(org.sbml.jsbml.AbstractSBase sbase, Graph g)
void	addSBaseAttributes(org.sbml.jsbml.AbstractSBase sbase, Graph g, String niceID)	This Method helps processing the attributes with a variable headline inherited by SBase
void	addSBaseAttributes(org.sbml.jsbml.AbstractSBase sbase, Node node)	Method adds all sBase attributes to an object of a model
Object	getAttribute(Edge e, String headline, String attributeName)
Object	getAttribute(GraphElement n, String headline, String attributeName)
Object	getAttribute(Graph g, String headline, String attributeName)	Shortens the statement for getting the value of an attribute
Object	getAttribute(Node n, String headline, String attributeName)	Shortens the statement for getting the value of an attribute
ArrayList<String>	headlineHelper(Graph g, String pattern)	Method returns all headlines in the graph tab which begin with a certain pattern
ArrayList<String>	headlineHelper(Node n, String pattern)	Method returns all headlines in the node tab which begin with a certain pattern

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

ATT

public final String ATT

To make the code shorter

Constructor Details

SBML_SBase_Writer

public SBML_SBase_Writer()

Method Details

addSBaseAttributes

public void addSBaseAttributes(org.sbml.jsbml.AbstractSBase sbase,
Graph g,
String niceID)

This Method helps processing the attributes with a variable headline inherited by SBase

Parameters:

sbase - has the attribute which will be set

g - contains the values for the export

headline - indicates where the information should be read from

intern - representation of headline

addSBaseAttributes

public void addSBaseAttributes(org.sbml.jsbml.AbstractSBase sbase,
Graph g)

addSBaseAttributes

public void addSBaseAttributes(org.sbml.jsbml.AbstractSBase sbase,
Edge e,
String niceID)

getAttribute

public Object getAttribute(Graph g,
String headline,
String attributeName)

Shortens the statement for getting the value of an attribute

Parameters:

g - contains the values for the export

headline - indicates where the information should be read from

attributeName - is the attribute to be read

Returns:

the value of the attribute

getAttribute

public Object getAttribute(Edge e,
String headline,
String attributeName)

addSBaseAttributes

public void addSBaseAttributes(org.sbml.jsbml.AbstractSBase sbase,
Node node)

Method adds all sBase attributes to an object of a model

Parameters:

sbase - will set new attributes

node - is the current graph element

headline - indicates where the information should be read from

niceID - the intern representation of headline

getAttribute

public Object getAttribute(Node n,
String headline,
String attributeName)

Shortens the statement for getting the value of an attribute

Parameters:

n - contains the values for the export

headline - indicates where the information should be read from

attributeName - is the attribute to be read

Returns:

the value of the attribute

getAttribute

public Object getAttribute(GraphElement n,
String headline,
String attributeName)

headlineHelper

public ArrayList<String> headlineHelper(Graph g,
String pattern)

Method returns all headlines in the graph tab which begin with a certain pattern

Parameters:

g - contains the values for the export

pattern - is the headline to be found

Returns:

all headlines with the required beginning

headlineHelper

public ArrayList<String> headlineHelper(Node n,
String pattern)

Method returns all headlines in the node tab which begin with a certain pattern

Parameters:

g - contains the values for the export

pattern - is the headline to be found

Returns:

all headlines with the required beginning