Class LVL2ModelConverter
java.lang.Object
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.LVL2ModelConverter
public class LVL2ModelConverter extends Object
takes an OWL model and fills the graph with edges, nodes and attributes
- Author:
- ricardo
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Constructor Summary
Constructors Constructor Description LVL2ModelConverter()
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Method Summary
Modifier and Type Method Description void
convertLVL2Model(org.biopax.paxtools.model.Model model, Graph g, boolean all)
Graph
getGraph()
void
readInteractionsFromPathway(org.biopax.paxtools.model.Model originalModel, ArrayList<MyPathWay> arrayList)
made for reading all interactions in a biopax level 3 model and writing it to the graph
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Constructor Details
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LVL2ModelConverter
public LVL2ModelConverter()
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Method Details
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convertLVL2Model
public void convertLVL2Model(org.biopax.paxtools.model.Model model, Graph g, boolean all) throws IllegalArgumentException, IllegalAccessException, InvocationTargetException -
getGraph
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readInteractionsFromPathway
public void readInteractionsFromPathway(org.biopax.paxtools.model.Model originalModel, ArrayList<MyPathWay> arrayList) throws IllegalArgumentException, IllegalAccessException, InvocationTargetExceptionmade for reading all interactions in a biopax level 3 model and writing it to the graph- Parameters:
originalModel
-processes
-- Throws:
IllegalArgumentException
IllegalAccessException
InvocationTargetException
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