Package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml

Class SBML_Reaction_Reader

java.lang.Object

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_Reaction_Reader

public class SBML_Reaction_Reader
extends Object

Constructor Summary

Constructors

Constructor	Description
SBML_Reaction_Reader()

Method Summary

Modifier and Type	Method	Description
void	addReactions(Graph g, org.sbml.jsbml.ListOf<org.sbml.jsbml.Reaction> reactionList, String modelID, PositionGridGenerator pgg, SBMLReactionHelper reactionhelper)	Method reads in function definitions and is called from class SBML_XML_Reader.java.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

SBML_Reaction_Reader

public SBML_Reaction_Reader()

Method Details

addReactions

public void addReactions(Graph g,
org.sbml.jsbml.ListOf<org.sbml.jsbml.Reaction> reactionList,
String modelID,
PositionGridGenerator pgg,
SBMLReactionHelper reactionhelper)

Method reads in function definitions and is called from class SBML_XML_Reader.java. Add reaction nodes and edges to the graph

Parameters:

g - the data structure for reading in the information

reactionList - contains the reactions for the import

modelID - is the id of the current model

pgg - is needed for drawing the graph