Uses of Class
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway

Packages that use Pathway

Package	Description
de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type
de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.pathway_kegg_operation
de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.reaction_gui
de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes

Uses of Pathway in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type with parameters of type Pathway

Modifier and Type	Method	Description
static void	KeggReactionIdAttributeEditor.editReactions(Reaction r, Pathway p, Collection<Gml2PathwayWarningInformation> warnings, Collection<Gml2PathwayErrorInformation> errors, HashMap<Entry,Node> entry2graphNode, Graph graph)

Uses of Pathway in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.pathway_kegg_operation

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.pathway_kegg_operation that return Pathway

Modifier and Type	Method	Description
static Pathway	PathwayKeggLoading.processInternalMapLinks(Graph baseGraph, Pathway optAddPathway, Vector2d optCenterOfAddGraph)

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.pathway_kegg_operation with parameters of type Pathway

Modifier and Type	Method	Description
static Pathway	PathwayKeggLoading.processInternalMapLinks(Graph baseGraph, Pathway optAddPathway, Vector2d optCenterOfAddGraph)

Uses of Pathway in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.reaction_gui

Constructors in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.reaction_gui with parameters of type Pathway

Constructor	Description
CompoundListEditor(Reaction currReaction, Pathway p, boolean sub, boolean enz, boolean prod, HashMap<Entry,Node> entry2graphNode)
ReactionIdEditor(Reaction initReaction, Pathway pathway)

Uses of Pathway in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg

Constructors in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg with parameters of type Pathway

Constructor	Description
ReactionLabel(Reaction r, HashMap<Entry,Node> entry2graphNode, Pathway p, Collection<Gml2PathwayWarningInformation> warnings, Collection<Gml2PathwayErrorInformation> errors, Graph graph)
RelationLabel(Relation r, HashMap<Entry,Node> entry2graphNode, Pathway pathway, Collection<Gml2PathwayWarningInformation> warnings, Collection<Gml2PathwayErrorInformation> errors, Graph graph)

Uses of Pathway in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml that return Pathway

Modifier and Type	Method	Description
static Pathway	Pathway.getPathwayFromGraph(Graph graph, Collection<Gml2PathwayWarningInformation> warnings, Collection<Gml2PathwayErrorInformation> errors, HashMap<Entry,Node> entry2graphNode)
static Pathway	Pathway.getPathwayFromKGML(InputStream in)
static Pathway	Pathway.getPathwayFromKGML(Reader in)
static Pathway	Pathway.getPathwayFromKGML(org.jdom2.Element kgmlRoot)

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml with parameters of type Pathway

Modifier and Type	Method	Description
static int	Pathway.testShowPathwayComparison(Pathway p1, Pathway p2, boolean showMessage)	Compare two pathways
static void	Pathway.testShowPathwayInfo(Pathway p)

Uses of Pathway in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes that return Pathway

Modifier and Type	Method	Description
Pathway	KeggId.getReferencePathway()

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes with parameters of type Pathway

Modifier and Type	Method	Description
void	KeggId.setReference(Pathway pathwayRef)