Uses of Class
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Reaction

Packages that use Reaction

Package	Description
de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type
de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.reaction_gui
de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes

Uses of Reaction in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type with parameters of type Reaction

Modifier and Type	Method	Description
static void	KeggReactionIdAttributeEditor.editReactions(Reaction r, Pathway p, Collection<Gml2PathwayWarningInformation> warnings, Collection<Gml2PathwayErrorInformation> errors, HashMap<Entry,Node> entry2graphNode, Graph graph)

Uses of Reaction in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.reaction_gui

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.reaction_gui with parameters of type Reaction

Modifier and Type	Method	Description
void	MyReactionList.updateReactionInfo(Reaction r)
void	CompoundListEditor.updateReactionSelection(Reaction r)
void	ReactionIdEditor.updateReactionSelection(Reaction r)
void	ReactionTypeSelection.updateReactionSelection(Reaction r)

Constructors in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.reaction_gui with parameters of type Reaction

Constructor	Description
CompoundListEditor(Reaction currReaction, Pathway p, boolean sub, boolean enz, boolean prod, HashMap<Entry,Node> entry2graphNode)
MyReactionList(Reaction[] reactions, JLabel reactionDescription, ReactionIdEditor reactionIdEditor, ReactionTypeSelection reactionTypeSelection, CompoundListEditor l1, CompoundListEditor l2, CompoundListEditor l3)
ReactionIdEditor(Reaction initReaction, Pathway pathway)
ReactionTypeSelection(Reaction initReaction)

Uses of Reaction in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg that return Reaction

Modifier and Type	Method	Description
Reaction	ReactionLabel.getReaction()

Constructors in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg with parameters of type Reaction

Constructor	Description
ReactionLabel(Reaction r, HashMap<Entry,Node> entry2graphNode, Pathway p, Collection<Gml2PathwayWarningInformation> warnings, Collection<Gml2PathwayErrorInformation> errors, Graph graph)

Uses of Reaction in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml that return Reaction

Modifier and Type	Method	Description
Reaction	ReactionAndInfo.getReaction()
static Reaction	Reaction.getReactionFromKgmlReactionElement(org.jdom2.Element reactionElement, Collection<Entry> entryElements, String clusterIdForHiddenCompounds)

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml that return types with arguments of type Reaction

Modifier and Type	Method	Description
Collection<Reaction>	Pathway.findReaction(String reactionId)
Collection<Reaction>	Pathway.findReaction(Collection<String> reactionIds)
static Collection<Reaction>	Reaction.getReactionElementsFromGraphEdges(Collection<Entry> entries, Collection<Edge> graphEdges, Collection<Gml2PathwayWarningInformation> warnings, Collection<Gml2PathwayErrorInformation> errors)
static Collection<Reaction>	Reaction.getReactionElementsFromGraphNodes(Collection<Entry> entries, List<Node> graphNodes, Collection<Gml2PathwayWarningInformation> warnings, Collection<Gml2PathwayErrorInformation> errors)
Collection<Reaction>	Pathway.getReactions()

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml with parameters of type Reaction

Modifier and Type	Method	Description
void	Entry.removeReaction(Reaction r)

Constructors in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml with parameters of type Reaction

Constructor	Description
ReactionAndInfo(Reaction reaction, boolean isProductRequest, boolean isSubstrateRequest, String substId, String prodId)

Uses of Reaction in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes that return Reaction

Modifier and Type	Method	Description
Reaction	KeggId.getReferenceReaction()

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes with parameters of type Reaction

Modifier and Type	Method	Description
void	KeggId.setReference(Reaction reactionRef)