Package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml

Class SBMLLocalParameter

java.lang.Object

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter

public class SBMLLocalParameter
extends Object

Constructor Summary

Constructors

Constructor	Description
SBMLLocalParameter(Graph g, int localParameterCount)
SBMLLocalParameter(Graph g, String presentedAttributeName, String internAttributeName)	Constructor.

Method Summary

Modifier and Type	Method	Description
void	deleteAnnotation(Node node)
void	deleteMetaID(Node node)
void	deleteNonRDFAnnotation(Node node)
void	deleteNotes(Node node)
void	deleteSBOTerm(Node node)
org.sbml.jsbml.Annotation	getAnnotation(Node node)
String	getID(Node reactionNode)
String	getMetaID(Node node)
String	getName(Node reactionNode)
org.sbml.jsbml.xml.XMLNode	getNonRDFAnnotation(Node node)
String	getNotes(Node node)
String	getSBOTerm(Node node)
String	getUnits(Node reactionNode)
Double	getValue(Node reactionNode)
Boolean	isSetAnnotation(Node reactionNode)
Boolean	isSetID(Node reactionNode)
Boolean	isSetMetaID(Node reactionNode)
Boolean	isSetName(Node reactionNode)
Boolean	isSetNonRDFAnnotation(Node reactionNode)
Boolean	isSetNotes(Node reactionNode)
Boolean	isSetSBOTerm(Node reactionNode)
Boolean	isSetUnits(Node reactionNode)
Boolean	isSetValue(Node reactionNode)
void	setAnnotation(Node reactionNode, org.sbml.jsbml.Annotation annotation)
void	setID(Node reactionNode, String ID)
void	setMetaID(Node reactionNode, String metaID)
void	setName(Node reactionNode, String name)
void	setNonRDFAnnotation(Node reactionNode, org.sbml.jsbml.xml.XMLNode nonRDFAnnotation)
void	setNotes(Node reactionNode, String notes, org.sbml.jsbml.xml.XMLNode notesObj)
void	setSBOTerm(Node reactionNode, String sboTerm)
void	setUnits(Node reactionNode, String units)
void	setValue(Node reactionNode, Double value)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

SBMLLocalParameter

public SBMLLocalParameter(Graph g,
String presentedAttributeName,
String internAttributeName)

Constructor. Initializes the graph. In Reader

Parameters:

g - the graph where the information is read from

SBMLLocalParameter

public SBMLLocalParameter(Graph g,
int localParameterCount)

Method Details

setID

public void setID(Node reactionNode,
String ID)

setName

public void setName(Node reactionNode,
String name)

setValue

public void setValue(Node reactionNode,
Double value)

setUnits

public void setUnits(Node reactionNode,
String units)

setMetaID

public void setMetaID(Node reactionNode,
String metaID)

getMetaID

public String getMetaID(Node node)

isSetMetaID

public Boolean isSetMetaID(Node reactionNode)

deleteMetaID

public void deleteMetaID(Node node)

setSBOTerm

public void setSBOTerm(Node reactionNode,
String sboTerm)

isSetSBOTerm

public Boolean isSetSBOTerm(Node reactionNode)

deleteSBOTerm

public void deleteSBOTerm(Node node)

getSBOTerm

public String getSBOTerm(Node node)

setAnnotation

public void setAnnotation(Node reactionNode,
org.sbml.jsbml.Annotation annotation)

isSetAnnotation

public Boolean isSetAnnotation(Node reactionNode)

deleteAnnotation

public void deleteAnnotation(Node node)

getAnnotation

public org.sbml.jsbml.Annotation getAnnotation(Node node)

setNonRDFAnnotation

public void setNonRDFAnnotation(Node reactionNode,
org.sbml.jsbml.xml.XMLNode nonRDFAnnotation)

isSetNonRDFAnnotation

public Boolean isSetNonRDFAnnotation(Node reactionNode)

deleteNonRDFAnnotation

public void deleteNonRDFAnnotation(Node node)

getNonRDFAnnotation

public org.sbml.jsbml.xml.XMLNode getNonRDFAnnotation(Node node)

setNotes

public void setNotes(Node reactionNode,
String notes,
org.sbml.jsbml.xml.XMLNode notesObj)

deleteNotes

public void deleteNotes(Node node)

isSetNotes

public Boolean isSetNotes(Node reactionNode)

getNotes

public String getNotes(Node node)

isSetID

public Boolean isSetID(Node reactionNode)

isSetName

public Boolean isSetName(Node reactionNode)

isSetValue

public Boolean isSetValue(Node reactionNode)

isSetUnits

public Boolean isSetUnits(Node reactionNode)

getID

public String getID(Node reactionNode)

getName

public String getName(Node reactionNode)

getValue

public Double getValue(Node reactionNode)

getUnits

public String getUnits(Node reactionNode)