Package de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references

Class PathwayReferenceAutoCreationAlgorithm

java.lang.Object

org.graffiti.plugin.algorithm.AbstractAlgorithm

de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayReferenceAutoCreationAlgorithm

All Implemented Interfaces:

UndoableEdit, Algorithm

public class PathwayReferenceAutoCreationAlgorithm
extends AbstractAlgorithm
implements Algorithm

Constructor Summary

Constructors

Constructor	Description
PathwayReferenceAutoCreationAlgorithm()

Method Summary

Modifier and Type	Method	Description
static Node	addMapLinkNode(String fileName, Graph graph, Node initNode, ActionEvent ae, boolean searchExistingMapLinkNode, boolean searchAndLinkSimilarNodes, boolean searchAndLinkSameTarget)
void	check()	Checks whether all preconditions of the current graph are satisfied.
void	connectGraphToGraphs(Collection<Graph> graphs, String workSessionFilePath, boolean linkviz)
void	execute()	Executes the whole algorithm.
String	getCategory()	Returns the category an algorithm should assigned to.
String	getDescription()	The algorithm description.
String	getName()	Returns the name (ID) of the algorithm.
Parameter[]	getParameters()	Returns a list of Parameter that are set for this algorithm.
Set<Category>	getSetCategory()	Returns a set of categories to classify this algorithm .
boolean	isLayoutAlgorithm()	A LayoutAlgorithm should return true.
boolean	mayWorkOnMultipleGraphs()
void	setParameters(Parameter[] params)	Sets the parameters for this algorithm.
void	setPerformRecreationOfView(boolean performRecreationOfView)

Methods inherited from class org.graffiti.plugin.algorithm.AbstractAlgorithm

addEdit, attach, canRedo, canUndo, die, doesUndo, getAcceleratorKeyStroke, getActionEvent, getMenuCategory, getPresentationName, getRedoPresentationName, getUndoPresentationName, isAlwaysExecutable, isSignificant, markExecutionDone, markRedoDone, markUndoDone, redo, replaceEdit, reset, setActionEvent, showMenuIcon, undo

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.graffiti.plugin.algorithm.Algorithm

attach, getAcceleratorKeyStroke, getActionEvent, getMenuCategory, reset, setActionEvent, showMenuIcon

Constructor Details

PathwayReferenceAutoCreationAlgorithm

public PathwayReferenceAutoCreationAlgorithm()

Method Details

getName

public String getName()

Description copied from interface: Algorithm

Returns the name (ID) of the algorithm.

Specified by:

getName in interface Algorithm

Returns:

DOCUMENT ME!

getCategory

public String getCategory()

Description copied from interface: Algorithm

Returns the category an algorithm should assigned to. Return NULL if the algorithm should be sorted directly in the plugin menu.

Specified by:

getCategory in interface Algorithm

Overrides:

getCategory in class AbstractAlgorithm

Returns:

The category an algorithm should assigned to.

getSetCategory

public Set<Category> getSetCategory()

Description copied from interface: Algorithm

Returns a set of categories to classify this algorithm . e.g. return new HashSet(Arrays.asList( Category.GRAPH, Category.NODE )); is an algorithm, working on graphs and more specific on nodes

Specified by:

getSetCategory in interface Algorithm

Overrides:

getSetCategory in class AbstractAlgorithm

Returns:

Set of Category Enums that classify this algorithm.

isLayoutAlgorithm

public boolean isLayoutAlgorithm()

Description copied from interface: Algorithm

A LayoutAlgorithm should return true. All other types of algorithms should return false.

Specified by:

isLayoutAlgorithm in interface Algorithm

Overrides:

isLayoutAlgorithm in class AbstractAlgorithm

Returns:

mayWorkOnMultipleGraphs

public boolean mayWorkOnMultipleGraphs()

Specified by:

mayWorkOnMultipleGraphs in interface Algorithm

Overrides:

mayWorkOnMultipleGraphs in class AbstractAlgorithm

check

public void check()
           throws PreconditionException

Description copied from interface: Algorithm

Checks whether all preconditions of the current graph are satisfied.

Specified by:

check in interface Algorithm

Overrides:

check in class AbstractAlgorithm

Throws:

PreconditionException - if the preconditions of the current graph are not satisfied.

getDescription

public String getDescription()

Description copied from class: AbstractAlgorithm

The algorithm description.

Specified by:

getDescription in interface Algorithm

Overrides:

getDescription in class AbstractAlgorithm

Returns:

String, could be HTML-styled.

getParameters

public Parameter[] getParameters()

Description copied from interface: Algorithm

Returns a list of Parameter that are set for this algorithm.

Specified by:

getParameters in interface Algorithm

Overrides:

getParameters in class AbstractAlgorithm

Returns:

a collection of Parameter that are needed by the Algorithm.

setParameters

public void setParameters(Parameter[] params)

Description copied from interface: Algorithm

Sets the parameters for this algorithm. Must have the same types and order as the array returned by getParameter.

Specified by:

setParameters in interface Algorithm

Overrides:

setParameters in class AbstractAlgorithm

Parameters:

params - Parameter array

execute

public void execute()

Description copied from interface: Algorithm

Executes the whole algorithm.

Specified by:

execute in interface Algorithm

connectGraphToGraphs

public void connectGraphToGraphs(Collection<Graph> graphs,
String workSessionFilePath,
boolean linkviz)

addMapLinkNode

public static Node addMapLinkNode(String fileName,
Graph graph,
Node initNode,
ActionEvent ae,
boolean searchExistingMapLinkNode,
boolean searchAndLinkSimilarNodes,
boolean searchAndLinkSameTarget)

setPerformRecreationOfView

public void setPerformRecreationOfView(boolean performRecreationOfView)