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IDProjectCategoryView StatusDate SubmittedLast Update
0000040VANTED 2.6.4[VANTED] Applicationpublic2017-11-19 16:512019-02-01 08:45
Reporterdimitar.garkovAssigned Todimitar.garkov 
PriorityhighSeveritymajorReproducibilityalways
Status closedResolutionnot fixable 
PlatformPCOSUbuntuOS Version14.04
Product Version[VANTED] 2.6.4 
Target VersionFixed in Version 
Summary0000040: Difference between KEGG Image Graph and extracted KGML Graph
Description

There are edges that are missing from the KGML description file, which are represented, although differently, in the graph shown as image in KEGG. These edges had to be intentionally left out. since they are foreign to the organism, but still part of the general pathway.

Steps To Reproduce

Download any KEGG pathway.
Open Graph as Image in the website.
Compare.

Additional Information

There is a way to retrieve those using the provided KEGG reference pathways and then build onto the downloaded KGML.

Tagsfeature, kegg
Attach Tags
TraceabilityN/A

Activities

There are no notes attached to this issue.

Issue History

Date Modified Username Field Change
2017-11-19 16:51 dimitar.garkov New Issue
2017-11-19 16:51 dimitar.garkov Tag Attached: feature
2017-11-19 16:51 dimitar.garkov Tag Attached: kegg
2017-11-19 17:02 dimitar.garkov Status new => acknowledged
2017-11-25 16:53 guest Note Added: 0000430
2018-02-07 04:04 guest Note Added: 0000651
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2018-02-07 16:12 guest Note Added: 0000761
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2018-02-07 16:19 guest Note Added: 0000763
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2019-02-01 08:02 administrator Category Core => Application
2019-02-01 08:22 dimitar.garkov Assigned To => dimitar.garkov
2019-02-01 08:22 dimitar.garkov Status acknowledged => closed
2019-02-01 08:22 dimitar.garkov Resolution open => fixed
2019-02-01 08:45 administrator Resolution fixed => no change required
2019-02-01 08:45 administrator Resolution no change required => not fixable