Package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.kegg_reaction

Class CreateKeggReactionNetworkAlgorithm

java.lang.Object

org.graffiti.plugin.algorithm.AbstractAlgorithm

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.kegg_reaction.CreateKeggReactionNetworkAlgorithm

All Implemented Interfaces:

UndoableEdit, Algorithm

public class CreateKeggReactionNetworkAlgorithm
extends AbstractAlgorithm

Author:

Christian Klukas (c) 2006 IPK Gatersleben, Group Network Analysis

Constructor Summary

Constructors

Constructor	Description
CreateKeggReactionNetworkAlgorithm()

Method Summary

Modifier and Type	Method	Description
void	check()	Checks whether all preconditions of the current graph are satisfied.
void	execute()	Executes the whole algorithm.
String	getCategory()	Returns the category an algorithm should assigned to.
String	getName()	Returns the name (ID) of the algorithm.
static Graph	getReactionNetwork()
Set<Category>	getSetCategory()	Returns a set of categories to classify this algorithm .

Methods inherited from class org.graffiti.plugin.algorithm.AbstractAlgorithm

addEdit, attach, canRedo, canUndo, die, doesUndo, getAcceleratorKeyStroke, getActionEvent, getDescription, getMenuCategory, getParameters, getPresentationName, getRedoPresentationName, getUndoPresentationName, isAlwaysExecutable, isLayoutAlgorithm, isSignificant, markExecutionDone, markRedoDone, markUndoDone, mayWorkOnMultipleGraphs, redo, replaceEdit, reset, setActionEvent, setParameters, showMenuIcon, undo

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

CreateKeggReactionNetworkAlgorithm

public CreateKeggReactionNetworkAlgorithm()

Method Details

getName

public String getName()

Description copied from interface: Algorithm

Returns the name (ID) of the algorithm.

Returns:

DOCUMENT ME!

getCategory

public String getCategory()

Description copied from interface: Algorithm

Returns the category an algorithm should assigned to. Return NULL if the algorithm should be sorted directly in the plugin menu.

Specified by:

getCategory in interface Algorithm

Overrides:

getCategory in class AbstractAlgorithm

Returns:

The category an algorithm should assigned to.

getSetCategory

public Set<Category> getSetCategory()

Description copied from interface: Algorithm

Returns a set of categories to classify this algorithm . e.g. return new HashSet(Arrays.asList( Category.GRAPH, Category.NODE )); is an algorithm, working on graphs and more specific on nodes

Specified by:

getSetCategory in interface Algorithm

Overrides:

getSetCategory in class AbstractAlgorithm

Returns:

Set of Category Enums that classify this algorithm.

check

public void check()
           throws PreconditionException

Description copied from interface: Algorithm

Checks whether all preconditions of the current graph are satisfied.

Specified by:

check in interface Algorithm

Overrides:

check in class AbstractAlgorithm

Throws:

PreconditionException - if the preconditions of the current graph are not satisfied.

execute

public void execute()

Description copied from interface: Algorithm

Executes the whole algorithm.

getReactionNetwork

public static Graph getReactionNetwork()