Package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax

Class BioPAX_OWL_Reader

java.lang.Object

org.graffiti.plugin.io.AbstractInputSerializer

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.BioPAX_OWL_Reader

All Implemented Interfaces:

InputSerializer, Serializer

public class BioPAX_OWL_Reader
extends AbstractInputSerializer

Imports Level 2 and 3 OWL Files to Vanted Graph. Uses two packages, one for each level.

Author:

ricardo

Constructor Summary

Constructors

Constructor	Description
BioPAX_OWL_Reader()

Method Summary

Modifier and Type	Method	Description
String[]	getExtensions()	The file extensions the serializer can read or write.
String[]	getFileTypeDescriptions()	The file type descriptions of the files the serializer can read or write.
void	read(InputStream in, Graph g)	main read method
void	read(Reader reader, Graph newGraph)

Methods inherited from class org.graffiti.plugin.io.AbstractInputSerializer

read, read, read, validFor

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

BioPAX_OWL_Reader

public BioPAX_OWL_Reader()

Method Details

getExtensions

public String[] getExtensions()

Description copied from interface: Serializer

The file extensions the serializer can read or write.

Returns:

DOCUMENT ME!

getFileTypeDescriptions

public String[] getFileTypeDescriptions()

Description copied from interface: Serializer

The file type descriptions of the files the serializer can read or write.

Returns:

DOCUMENT ME!

read

public void read(InputStream in,
Graph g)
          throws IOException

main read method

Specified by:

read in interface InputSerializer

Specified by:

read in class AbstractInputSerializer

Parameters:

in - The input stream to read the graph from.

g - The graph to add the newly read graph to.

Throws:

IOException - If an IO error occurs.

read

public void read(Reader reader,
Graph newGraph)
          throws Exception

Throws:

Exception