Class PathWayHandler
java.lang.Object
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.HelperClass
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.PathWayHandler
public class PathWayHandler extends HelperClass
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Constructor Summary
Constructors Constructor Description PathWayHandler(org.biopax.paxtools.model.Model model, Graph graph)
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Method Summary
Modifier and Type Method Description ArrayList<MyPathWay>
getPathWays()
returns all PathWays found by getPathWaysfromModelvoid
getPathWaysfromModel()
use to write PathWays in an own data structurevoid
writePathWaysToGraph()
use while import to write PathWays as attributes on the graphMethods inherited from class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.HelperClass
returnAttributeByPath, returnAttributeByPath
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Constructor Details
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PathWayHandler
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Method Details
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getPathWaysfromModel
public void getPathWaysfromModel()use to write PathWays in an own data structure -
getPathWays
returns all PathWays found by getPathWaysfromModel -
writePathWaysToGraph
public void writePathWaysToGraph()use while import to write PathWays as attributes on the graph
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