Package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kegg_xml

Class KEGG2_XML_Reader

java.lang.Object

org.graffiti.plugin.io.AbstractInputSerializer

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kegg_xml.KEGG2_XML_Reader

All Implemented Interfaces:

InputSerializer, Serializer

public class KEGG2_XML_Reader
extends AbstractInputSerializer

Author:

Christian Klukas (c) 2004-2006 IPK-Gatersleben

Constructor Summary

Constructors

Constructor	Description
KEGG2_XML_Reader()

Method Summary

Modifier and Type	Method	Description
String[]	getExtensions()	The file extensions the serializer can read or write.
String[]	getFileTypeDescriptions()	The file type descriptions of the files the serializer can read or write.
void	read(InputStream in, Graph g)	Reads in a graph from the given input stream.
void	read(Reader reader, Graph g)
void	read(String filename, Graph g)	Reads in a graph from the given filename.
boolean	validFor(InputStream reader)

Methods inherited from class org.graffiti.plugin.io.AbstractInputSerializer

read, read

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

KEGG2_XML_Reader

public KEGG2_XML_Reader()

Method Details

read

public void read(String filename,
Graph g)
          throws IOException

Description copied from class: AbstractInputSerializer

Reads in a graph from the given filename.

Specified by:

read in interface InputSerializer

Overrides:

read in class AbstractInputSerializer

Parameters:

filename - The name of the file to read the graph from.

g - The graph to add the newly read graph to.

Throws:

IOException - If an IO error occurs.

read

public void read(InputStream in,
Graph g)
          throws IOException

Description copied from class: AbstractInputSerializer

Reads in a graph from the given input stream.

Specified by:

read in interface InputSerializer

Specified by:

read in class AbstractInputSerializer

Parameters:

in - The input stream to read the graph from.

g - The graph to add the newly read graph to.

Throws:

IOException - If an IO error occurs.

getExtensions

public String[] getExtensions()

Description copied from interface: Serializer

The file extensions the serializer can read or write.

Returns:

DOCUMENT ME!

getFileTypeDescriptions

public String[] getFileTypeDescriptions()

Description copied from interface: Serializer

The file type descriptions of the files the serializer can read or write.

Returns:

DOCUMENT ME!

read

public void read(Reader reader,
Graph g)
          throws Exception

Throws:

Exception

validFor

public boolean validFor(InputStream reader)

Specified by:

validFor in interface InputSerializer

Overrides:

validFor in class AbstractInputSerializer

Parameters:

reader - Warning: The Inputstream-Length may be limited in size, e.g. may only provide access to the first 5000 bytes.

Returns: