Package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kgml

Class KEGG_XML_Reader_g

java.lang.Object

org.graffiti.plugin.io.AbstractInputSerializer

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kgml.KEGG_XML_Reader_g

All Implemented Interfaces:

InputSerializer, Serializer

public class KEGG_XML_Reader_g
extends AbstractInputSerializer

Author:

Christian Klukas (edited version without VANTED class dependencies) (c) 2004-2006 IPK-Gatersleben

Constructor Summary

Constructors

Constructor	Description
KEGG_XML_Reader_g()

Method Summary

Modifier and Type	Method	Description
String[]	getExtensions()	The file extensions the serializer can read or write.
String[]	getFileTypeDescriptions()	The file type descriptions of the files the serializer can read or write.
void	read(InputStream in, Graph g)	Reads in a graph from the given input stream.
void	read(Reader in, Graph g)
void	read(String filename, Graph g)	Reads in a graph from the given filename.

Methods inherited from class org.graffiti.plugin.io.AbstractInputSerializer

read, read, validFor

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

KEGG_XML_Reader_g

public KEGG_XML_Reader_g()

Method Details

read

public void read(String filename,
Graph g)
          throws IOException

Description copied from class: AbstractInputSerializer

Reads in a graph from the given filename.

Specified by:

read in interface InputSerializer

Overrides:

read in class AbstractInputSerializer

Parameters:

filename - The name of the file to read the graph from.

g - The graph to add the newly read graph to.

Throws:

IOException - If an IO error occurs.

read

public void read(InputStream in,
Graph g)
          throws IOException

Description copied from class: AbstractInputSerializer

Reads in a graph from the given input stream.

Specified by:

read in interface InputSerializer

Specified by:

read in class AbstractInputSerializer

Parameters:

in - The input stream to read the graph from.

g - The graph to add the newly read graph to.

Throws:

IOException - If an IO error occurs.

getExtensions

public String[] getExtensions()

Description copied from interface: Serializer

The file extensions the serializer can read or write.

Returns:

DOCUMENT ME!

getFileTypeDescriptions

public String[] getFileTypeDescriptions()

Description copied from interface: Serializer

The file type descriptions of the files the serializer can read or write.

Returns:

DOCUMENT ME!

read

public void read(Reader in,
Graph g)
          throws Exception

Throws:

Exception