Package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml

Class SBMLCompartment

java.lang.Object

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartment

public class SBMLCompartment
extends Object

Constructor Summary

Constructors

Constructor	Description
SBMLCompartment(Graph g, String internHeadline)	Constructor.
SBMLCompartment(Graph g, String internHeadline, String presentedHeadline)	Constructor.

Method Summary

Modifier and Type	Method	Description
void	countCompartments()
org.sbml.jsbml.Compartment	getCompartment()
Boolean	getConstant()
String	getID()
String	getName()
Double	getSize()
Double	getSpatialDimensions()
String	getUnits()
Boolean	isSetConstant()
Boolean	isSetID()
Boolean	isSetName()
Boolean	isSetSize()
Boolean	isSetSpatialDimensions()
Boolean	isSetUnits()
void	setAnnotation(org.sbml.jsbml.Annotation annotation)
void	setConstant(Boolean constant)
void	setID(String id)
void	setMetaID(String metaID)
void	setName(String name)
void	setNonRDFAnnotation(org.sbml.jsbml.xml.XMLNode nonRDFAnnotation)
void	setNotes(String notes, org.sbml.jsbml.xml.XMLNode notesObj)
void	setOutside(String outside)
void	setSBOTerm(String sboTerm)
void	setSize(Double size)
void	setSpatialDimensions(Double spatialDimensions)
void	setUnits(String units)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

SBMLCompartment

public SBMLCompartment(Graph g,
String internHeadline,
String presentedHeadline)

Constructor. Initializes the graph. Use in SBML_Compartment_Reader.java

Parameters:

g - the graph where the information is read from

SBMLCompartment

public SBMLCompartment(Graph g,
String internHeadline)

Constructor. Initializes the graph. Use in SBML_Compartmetn_Writer.java

Parameters:

g - the graph where the information is read from

internHeadline - the intern headline of the current Compartment

Method Details

countCompartments

public void countCompartments()

getCompartment

public org.sbml.jsbml.Compartment getCompartment()

isSetID

public Boolean isSetID()

getID

public String getID()

setID

public void setID(String id)

setName

public void setName(String name)

isSetName

public Boolean isSetName()

getName

public String getName()

setSpatialDimensions

public void setSpatialDimensions(Double spatialDimensions)

isSetSpatialDimensions

public Boolean isSetSpatialDimensions()

getSpatialDimensions

public Double getSpatialDimensions()

setSize

public void setSize(Double size)

isSetSize

public Boolean isSetSize()

getSize

public Double getSize()

setUnits

public void setUnits(String units)

isSetUnits

public Boolean isSetUnits()

getUnits

public String getUnits()

setConstant

public void setConstant(Boolean constant)

isSetConstant

public Boolean isSetConstant()

getConstant

public Boolean getConstant()

setMetaID

public void setMetaID(String metaID)

setSBOTerm

public void setSBOTerm(String sboTerm)

setOutside

public void setOutside(String outside)

setNotes

public void setNotes(String notes,
org.sbml.jsbml.xml.XMLNode notesObj)

setAnnotation

public void setAnnotation(org.sbml.jsbml.Annotation annotation)

setNonRDFAnnotation

public void setNonRDFAnnotation(org.sbml.jsbml.xml.XMLNode nonRDFAnnotation)