Uses of Class
org.graffiti.selection.Selection

Packages that use Selection

Package	Description
de.ipk_gatersleben.ag_nw.graffiti
de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths
de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type
de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings
de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands
de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup
de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy
de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection
de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.printer
de.ipk_gatersleben.ag_nw.graffiti.services
org.graffiti.editor	Contains classes for the famous graffiti editor.
org.graffiti.editor.actions	Contains the editor's action classes.
org.graffiti.editor.dialog
org.graffiti.plugin.actions
org.graffiti.plugin.algorithm
org.graffiti.plugin.parameter
org.graffiti.plugins.guis.switchselections
org.graffiti.selection	Contains classes for the selection model.
org.vanted.plugins.layout.multilevelframework	A layout algorithm to Vanted that implements the multi-level graph layout framework.
org.vanted.plugins.layout.stressminimization	A layout algorithm to Vanted that implements stress minimization.

Uses of Selection in de.ipk_gatersleben.ag_nw.graffiti

Methods in de.ipk_gatersleben.ag_nw.graffiti that return Selection

Modifier and Type	Method	Description
static Selection	GraphHelper.removeNonValidElementsFromSelection(Selection s)

Methods in de.ipk_gatersleben.ag_nw.graffiti with parameters of type Selection

Modifier and Type	Method	Description
static Collection<Edge>	GraphHelper.getSelectedOrAllEdges(Selection selection, Graph graph)
static Collection<GraphElement>	GraphHelper.getSelectedOrAllGraphElements(Selection selection, Graph graph)
static List<Node>	GraphHelper.getSelectedOrAllNodes(Selection selection, Graph graph)	Returns a list of the currently selected nodes.
static Selection	GraphHelper.removeNonValidElementsFromSelection(Selection s)

Uses of Selection in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths with parameters of type Selection

Modifier and Type	Method	Description
void	AllPathsSelectionAlgorithm.setSelection(Selection selection)	Sets the selection on which the algorithm works.
void	WeightedShortestPathSelectionAlgorithm.setSelection(Selection selection)

Uses of Selection in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type with parameters of type Selection

Modifier and Type	Method	Description
static void	KeggReactionIdAttributeEditor.editReactions(GraphElement ge, String currentReactionId, Graph graph, Selection selection)

Uses of Selection in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings with parameters of type Selection

Modifier and Type	Method	Description
void	PreferencesDialog.initAlgorithmPreferencesPanel(JDialog thisDialog, Algorithm alg, Graph graph, Selection sele, HandlesAlgorithmData setAlgorithmDataObject, boolean executeMoveToTopAfterwards)
void	PreferencesDialog.initializeGUIforGivenContainer(Container cp, JDialog thisDialog, boolean vertical, boolean showCloseButton, boolean showAlgorithms, boolean showSettings, boolean showInteractiveAlgorithms, boolean showScripts, boolean showOnlyLayoutAlgorithms, Graph graph, Selection selection, HandlesAlgorithmData setAlgorithmDataObject, boolean executeMoveToTopAfterwards)
void	PreferencesDialog.updateSettingsPanel(JDialog thisDialog, Graph graph, Selection selection, HandlesAlgorithmData setAlgorithmDataObject, boolean executeMoveToTopAfterwards)

Uses of Selection in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate with parameters of type Selection

Modifier and Type	Method	Description
void	RotateAlgorithm.attach(Graph g, Selection selection)

Uses of Selection in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph with parameters of type Selection

Modifier and Type	Method	Description
static ArrayList<Node>	ApplyGraphLayout.applyLayoutFromGraphToGraph(Selection s, Graph g, Graph layoutedGraph, String commandName, boolean considerEdgeLayout)
void	ApplyGraphLayout.attach(Graph g, Selection selection)

Uses of Selection in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle with parameters of type Selection

Modifier and Type	Method	Description
void	CircleLayouterWithMinimumCrossingsAlgorithm.attach(Graph graph, Selection selection)

Uses of Selection in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder with parameters of type Selection

Modifier and Type	Method	Description
void	PatternSpringembedder.attach(Graph g, Selection s)
void	PatternSpringembedder3d.attach(Graph g, Selection s)
static void	MyTools.initNodeCache(ArrayList<NodeCacheEntry> nodeArray, HashMap<Node,NodeCacheEntry> nodeSearch, Graph graph, Selection selection, ArrayList<Graph> patternGraphs)	As the attribute access is very slow, this method initializes the NodeCacheEntry structures.
static void	MyTools.initNodeCache3d(ArrayList<NodeCacheEntry3d> nodeArray, HashMap<Node,NodeCacheEntry3d> nodeSearch, Graph graph, Selection selection)

Constructors in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder with parameters of type Selection

Constructor	Description
MyNonInteractiveSpringEmb(Graph gi, Selection s, ThreadSafeOptions tso)

Uses of Selection in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache with parameters of type Selection

Modifier and Type	Method	Description
void	PatternSpringembedder.attach(Graph g, Selection selection)

Uses of Selection in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands with parameters of type Selection

Modifier and Type	Method	Description
void	RemoveBendsAlgorithm.attach(Graph graph, Selection selection, boolean attachUndo)	See AbstractAlgorithm.attach(Graph, Selection).

Uses of Selection in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup with parameters of type Selection

Modifier and Type	Method	Description
void	NumberNodesAndEdgesAlgorithm.attach(Graph g, Selection s)
void	DeleteNodesAlgorithm.setSelection(Selection selection)	Sets the selection on which the algorithm works.

Uses of Selection in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy with parameters of type Selection

Modifier and Type	Method	Description
void	HierarchyAlgorithm.setSelection(Selection selection)	Sets the selection on which the algorithm works.
void	SelectLeafNodesAlgorithm.setSelection(Selection selection)	Sets the selection on which the algorithm works.

Uses of Selection in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection with parameters of type Selection

Modifier and Type	Method	Description
void	ExportDataTableAlgorithm.attach(Graph graph, Selection selection)
void	ExpandSelectionAlgorithm.setSelection(Selection selection)	Sets the selection on which the algorithm works.
void	FindReplaceDialog.setSelection(Selection selection)	Sets the selection on which the algorithm works.
void	InvertSelectionAlgorithm.setSelection(Selection selection)	Sets the selection on which the algorithm works.
void	RemoveSelectedNodesPreserveEdgesAlgorithm.setSelection(Selection selection)	Sets the selection on which the algorithm works.
void	SearchAndSelecAlgorithm.setSelection(Selection selection)	Sets the selection on which the algorithm works.

Uses of Selection in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.printer

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.printer with parameters of type Selection

Modifier and Type	Method	Description
void	PrintAlgorithm.attach(Graph g, Selection s)	Unused for this plugin.

Uses of Selection in de.ipk_gatersleben.ag_nw.graffiti.services

Methods in de.ipk_gatersleben.ag_nw.graffiti.services with parameters of type Selection

Modifier and Type	Method	Description
static void	AlgorithmServices.selectAndRunLayoutAlgorithm(Graph clusterReferenceGraph, Selection selection, String commandTitle, boolean executeMoveToTopAfterwards)	This method calls a user defined layout algorithm for the given graph.

Constructors in de.ipk_gatersleben.ag_nw.graffiti.services with parameters of type Selection

Constructor	Description
RunAlgorithmDialog(String title, Graph graph, Selection selection, boolean returnAlgorithmInsteadOfRun, boolean executeMoveToTopAfterwards)

Uses of Selection in org.graffiti.editor

Methods in org.graffiti.editor with parameters of type Selection

Modifier and Type	Method	Description
void	GravistoService.runAlgorithm(Algorithm algorithm, Graph graph, Selection selection, boolean enableMultipleSessionProcessing, ActionEvent event)
void	GravistoService.runAlgorithm(Algorithm algorithm, Graph graph, Selection selection, ActionEvent event)

Uses of Selection in org.graffiti.editor.actions

Methods in org.graffiti.editor.actions with parameters of type Selection

Modifier and Type	Method	Description
static void	CopyAction.doCopyGraph(Graph sourceGraph, Selection selection)
static void	CopyAction.doCopyGraphMethodImproved(Graph sourceGraph, Selection selection)
static Graph	CopyAction.doCopyGraphMethodImproved(Graph sourceGraph, Selection selection, boolean returnGraphInsteadPastingInClipboard)
static Graph	CopyAction.doCopyGraphMethodImproved(Graph sourceGraph, Selection selection, boolean returnGraphInsteadPastingInClipboard, OutputSerializer os)

Uses of Selection in org.graffiti.editor.dialog

Methods in org.graffiti.editor.dialog with parameters of type Selection

Modifier and Type	Method	Description
void	ParameterEditPanel.buildTable(Selection selection, FolderPanel myPanel)	Builds the table that is used for editing parameters

Constructors in org.graffiti.editor.dialog with parameters of type Selection

Constructor	Description
DefaultParameterDialog(EditComponentManager editComponentManager, Component parent, Parameter[] parameters, Selection selection, String algorithmName, Object description)	Constructor for DefaultParameterDialog.
DefaultParameterDialog(EditComponentManager editComponentManager, Component parent, Parameter[] parameters, Selection selection, String algorithmName, Object description, boolean okOnly, boolean noButton, boolean allowMultipleGraphTargets)
DefaultParameterDialog(EditComponentManager editComponentManager, Component parent, Parameter[] parameters, Selection selection, String algorithmName, Object descriptionOrComponent, JComponent descComponent, boolean allowMultipleGraphTargets)
DefaultParameterDialog(EditComponentManager editComponentManager, Component parent, Parameter[] parameters, Selection selection, String algorithmName, Object descriptionOrComponent, JComponent descComponent, boolean okOnly, boolean noButton, boolean allowMultipleGraphTargets, String okOnlyButtonText)
DefaultParameterDialog(EditComponentManager editComponentManager, Component parent, Parameter[] parameters, Selection selection, String algorithmNameUsedAsTitle, Object descriptionOrComponent, JComponent descComponent, boolean okOnly, boolean noButton, boolean allowMultipleGraphTargets, String okOnlyButtonText, boolean modal)
ParameterEditPanel(Parameter[] parameters, Map<?,?> editTypes, Selection selection, String title, boolean fillSurroundingStyle, String heading)	Instantiates a new edit panel.
ParameterEditPanel(Parameter[] parameters, Map<?,?> editTypes, Selection selection, String title, boolean fillSurroundingStyle, String heading, JComponent descComponent)

Uses of Selection in org.graffiti.plugin.actions

Methods in org.graffiti.plugin.actions that return Selection

Modifier and Type	Method	Description
Selection	SelectionAction.getSelection()

Uses of Selection in org.graffiti.plugin.algorithm

Methods in org.graffiti.plugin.algorithm that return Selection

Modifier and Type	Method	Description
Selection	ThreadSafeOptions.getSelection()

Methods in org.graffiti.plugin.algorithm with parameters of type Selection

Modifier and Type	Method	Description
void	AbstractAlgorithm.attach(Graph graph, Selection selection)
void	Algorithm.attach(Graph g, Selection selection)	Attaches the given graph to this algorithm.
ParameterDialog	AbstractEditorAlgorithm.getParameterDialog(Selection s)
ParameterDialog	EditorAlgorithm.getParameterDialog(Selection sel)	Returns a custom ParameterDialog if the algorithm wants to provide one.
void	ThreadSafeOptions.setSelection(Selection selection)	Set selection for graph.

Uses of Selection in org.graffiti.plugin.parameter

Methods in org.graffiti.plugin.parameter that return Selection

Modifier and Type	Method	Description
Selection	SelectionParameter.getSelection()	Returns the selection encapsulated in this parameter.

Methods in org.graffiti.plugin.parameter with parameters of type Selection

Modifier and Type	Method	Description
void	SelectionParameter.setSelection(Selection selection)	Sets the selection.

Constructors in org.graffiti.plugin.parameter with parameters of type Selection

Constructor	Description
SelectionParameter(String name, String description, Selection sel)	Constructs a new selection parameter.
SelectionParameter(Selection sel, String name, String description)	Constructs a new selection parameter.

Uses of Selection in org.graffiti.plugins.guis.switchselections

Constructors in org.graffiti.plugins.guis.switchselections with parameters of type Selection

Constructor	Description
SelectionChangeAction(Selection sel, EditorSession sess)	Creates a new SelectionChangeAction object.

Uses of Selection in org.graffiti.selection

Methods in org.graffiti.selection that return Selection

Modifier and Type	Method	Description
Selection	SelectionModel.getActiveSelection()	Returns the active selection.
Selection	SelectionEvent.getSelection()	Returns the selection contained in the event.

Methods in org.graffiti.selection with parameters of type Selection

Modifier and Type	Method	Description
void	SelectionModel.add(Selection selection)	Adds the given selection to the list of selections.
void	Selection.addSelection(Selection sel)	Adds all elements from the given selection to this selection.
void	SelectionModel.remove(Selection selection)	Removes the given selection for the list of selections.
void	SelectionModel.setActiveSelection(Selection sel)	Sets the active selection to the given value.

Constructors in org.graffiti.selection with parameters of type Selection

Constructor	Description
SelectionEvent(Selection selection)	Constructs a new SelectionEvent.

Uses of Selection in org.vanted.plugins.layout.multilevelframework

Methods in org.vanted.plugins.layout.multilevelframework with parameters of type Selection

Modifier and Type	Method	Description
void	ForceDirectedLayoutWrapper.attach(Graph g, Selection s)
void	MultilevelFrameworkLayout.attach(Graph g, Selection selection)
void	LayoutAlgorithmWrapper.execute(Graph graph, Selection selection)	Execute the layout algorithm with the given Graph and Selection.

Uses of Selection in org.vanted.plugins.layout.stressminimization

Methods in org.vanted.plugins.layout.stressminimization with parameters of type Selection

Modifier and Type	Method	Description
void	BackgroundExecutionAlgorithm.attach(Graph g, Selection selection)