Package de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg

Class KoEntry

java.lang.Object
de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KoEntry
All Implemented Interfaces:
Comparable<KoEntry>
public class KoEntry
extends Object
implements Comparable<KoEntry>
Author:
Christian Klukas (c) 2006 IPK-Gatersleben

  • Constructor Details

    • KoEntry

      public KoEntry()

  • Method Details

    • toString

      public String toString()
      Overrides:
      toString in class Object

    • equals

      public boolean equals​(Object obj)
      Overrides:
      equals in class Object

    • hashCode

      public int hashCode()
      Overrides:
      hashCode in class Object

    • isValid

      public boolean isValid()

    • getKoID

      public String getKoID()

    • getKoName

      public String getKoName()

    • getKoDefinition

      public String getKoDefinition()

    • setKoentryID

      public void setKoentryID​(String koentryID)

    • setKoname

      public void setKoname​(String koname)

    • setKodefinition

      public void setKodefinition​(String kodefinition)

    • getDbLinkId2Values

      public HashMap<String,​HashSet<String>> getDbLinkId2Values()

    • addDbLinkValue

      public void addDbLinkValue​(String dbKey, String linkvalue)

    • addGeneForSpecies

      public void addGeneForSpecies​(String speciesKey, String geneId)

    • addBriteEntry

      public void addBriteEntry​(String briteName, Set<BriteEntry> entry)

    • getKoDbLinks

      public Collection<String> getKoDbLinks​(String dbLinkId)

    • getKoDbLinks

      public Collection<String> getKoDbLinks()

    • getGeneIDs

      public HashSet<String> getGeneIDs​(String orgCode)

    • getOrganismCodes

      public Set<String> getOrganismCodes()

    • hasGeneMapping

      public boolean hasGeneMapping​(String orgCode, String gene)

    • compareTo

      public int compareTo​(KoEntry o)
      Specified by:
      compareTo in interface Comparable<KoEntry>

    • getOrganismCodesForGeneID

      public Set<String> getOrganismCodesForGeneID​(String altId)