Package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper

Interface ExperimentInterface

All Superinterfaces:

AttributeValuePairSupport, Cloneable, Collection<SubstanceInterface>, Iterable<SubstanceInterface>, List<SubstanceInterface>, MappingDataEntity

All Known Implementing Classes:

Experiment

public interface ExperimentInterface
extends List<SubstanceInterface>, Cloneable, MappingDataEntity

Field Summary

Fields

Modifier and Type	Field	Description
static String	UNSPECIFIED_ATTRIBUTE_STRING
static String	UNSPECIFIED_EXPERIMENTNAME
static String	UNSPECIFIED_SUBSTANCE

Fields inherited from interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MappingDataEntity

ANNO_DIV

Method Summary

Modifier and Type	Method	Description
void	add(int index, SubstanceInterface element)
boolean	add(SubstanceInterface e)
boolean	addAll(int index, Collection<? extends SubstanceInterface> c)
void	addAll(ExperimentInterface m)
boolean	addAll(Collection<? extends SubstanceInterface> c)
void	addAndMerge(ExperimentInterface toBeAdded)
void	clear()
ExperimentInterface	clone()
boolean	contains(Object o)
boolean	containsAll(Collection<?> arg0)
void	ensureCapacity(int minCapacity)
void	fillAttributeMap(Map<String,Object> attributeValueMap)
ExperimentInterface	filter(Collection<String> validNames, Collection<String> validTimes)
SubstanceInterface	get(int index)
String	getCoordinator()
ExperimentHeaderInterface	getHeader()
Collection<ExperimentHeaderInterface>	getHeaders()
Date	getImportDate()
double	getMeasurementValuesSum()
String	getName()
int	getNumberOfMeasurementValues()
String	getRemark()
String	getSequence()
Date	getStartDate()
int	indexOf(Object o)
boolean	isEmpty()
Iterator<SubstanceInterface>	iterator()
int	lastIndexOf(Object o)
ListIterator<SubstanceInterface>	listIterator()
ListIterator<SubstanceInterface>	listIterator(int index)
void	mergeBiologicalReplicates(BackgroundTaskStatusProviderSupportingExternalCall status)
SubstanceInterface	remove(int index)
boolean	remove(Object o)
boolean	removeAll(Collection<?> arg0)
boolean	retainAll(Collection<?> arg0)
SubstanceInterface	set(int index, SubstanceInterface element)
void	setHeader(ExperimentHeaderInterface header)
int	size()
Collection<ExperimentInterface>	split()
List<SubstanceInterface>	subList(int fromIndex, int toIndex)
Object[]	toArray()
<T> T[]	toArray(T[] a)
String	toString()
String	toStringWithErrorThrowing()
void	trimToSize()

Methods inherited from interface java.util.Collection

parallelStream, removeIf, stream, toArray

Methods inherited from interface java.lang.Iterable

forEach

Methods inherited from interface java.util.List

equals, hashCode, replaceAll, sort, spliterator

Methods inherited from interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MappingDataEntity

getStringOfChildren, getXMLAttributeString, setAttribute, setData, setDataOfChildElement

Field Details

UNSPECIFIED_ATTRIBUTE_STRING

static final String UNSPECIFIED_ATTRIBUTE_STRING

See Also:

Constant Field Values

UNSPECIFIED_EXPERIMENTNAME

static final String UNSPECIFIED_EXPERIMENTNAME

See Also:

Constant Field Values

UNSPECIFIED_SUBSTANCE

static final String UNSPECIFIED_SUBSTANCE

See Also:

Constant Field Values

Method Details

addAll

void addAll(ExperimentInterface m)

filter

ExperimentInterface filter(Collection<String> validNames,
Collection<String> validTimes)

getName

String getName()

getRemark

String getRemark()

getCoordinator

String getCoordinator()

getImportDate

Date getImportDate()

getStartDate

Date getStartDate()

clone

ExperimentInterface clone()

split

Collection<ExperimentInterface> split()

setHeader

void setHeader(ExperimentHeaderInterface header)

getHeader

ExperimentHeaderInterface getHeader()

getHeaders

Collection<ExperimentHeaderInterface> getHeaders()

isEmpty

boolean isEmpty()

Specified by:

isEmpty in interface Collection<SubstanceInterface>

Specified by:

isEmpty in interface List<SubstanceInterface>

add

void add(int index,
SubstanceInterface element)

Specified by:

add in interface List<SubstanceInterface>

add

boolean add(SubstanceInterface e)

Specified by:

add in interface Collection<SubstanceInterface>

Specified by:

add in interface List<SubstanceInterface>

addAll

boolean addAll(Collection<? extends SubstanceInterface> c)

Specified by:

addAll in interface Collection<SubstanceInterface>

Specified by:

addAll in interface List<SubstanceInterface>

addAll

boolean addAll(int index,
Collection<? extends SubstanceInterface> c)

Specified by:

addAll in interface List<SubstanceInterface>

contains

boolean contains(Object o)

Specified by:

contains in interface Collection<SubstanceInterface>

Specified by:

contains in interface List<SubstanceInterface>

containsAll

boolean containsAll(Collection<?> arg0)

Specified by:

containsAll in interface Collection<SubstanceInterface>

Specified by:

containsAll in interface List<SubstanceInterface>

ensureCapacity

void ensureCapacity(int minCapacity)

indexOf

int indexOf(Object o)

Specified by:

indexOf in interface List<SubstanceInterface>

lastIndexOf

int lastIndexOf(Object o)

Specified by:

lastIndexOf in interface List<SubstanceInterface>

listIterator

ListIterator<SubstanceInterface> listIterator()

Specified by:

listIterator in interface List<SubstanceInterface>

listIterator

ListIterator<SubstanceInterface> listIterator(int index)

Specified by:

listIterator in interface List<SubstanceInterface>

remove

SubstanceInterface remove(int index)

Specified by:

remove in interface List<SubstanceInterface>

remove

boolean remove(Object o)

Specified by:

remove in interface Collection<SubstanceInterface>

Specified by:

remove in interface List<SubstanceInterface>

removeAll

boolean removeAll(Collection<?> arg0)

Specified by:

removeAll in interface Collection<SubstanceInterface>

Specified by:

removeAll in interface List<SubstanceInterface>

retainAll

boolean retainAll(Collection<?> arg0)

Specified by:

retainAll in interface Collection<SubstanceInterface>

Specified by:

retainAll in interface List<SubstanceInterface>

set

SubstanceInterface set(int index,
SubstanceInterface element)

Specified by:

set in interface List<SubstanceInterface>

subList

List<SubstanceInterface> subList(int fromIndex,
int toIndex)

Specified by:

subList in interface List<SubstanceInterface>

toArray

Object[] toArray()

Specified by:

toArray in interface Collection<SubstanceInterface>

Specified by:

toArray in interface List<SubstanceInterface>

toArray

<T> T[] toArray(T[] a)

Specified by:

toArray in interface Collection<SubstanceInterface>

Specified by:

toArray in interface List<SubstanceInterface>

toString

String toString()

Overrides:

toString in class Object

toStringWithErrorThrowing

String toStringWithErrorThrowing()
                          throws IOException,
TransformerException,
org.jdom2.JDOMException

Throws:

IOException

TransformerException

org.jdom2.JDOMException

trimToSize

void trimToSize()

size

int size()

Specified by:

size in interface Collection<SubstanceInterface>

Specified by:

size in interface List<SubstanceInterface>

get

SubstanceInterface get(int index)

Specified by:

get in interface List<SubstanceInterface>

iterator

Iterator<SubstanceInterface> iterator()

Specified by:

iterator in interface Collection<SubstanceInterface>

Specified by:

iterator in interface Iterable<SubstanceInterface>

Specified by:

iterator in interface List<SubstanceInterface>

clear

void clear()

Specified by:

clear in interface Collection<SubstanceInterface>

Specified by:

clear in interface List<SubstanceInterface>

getSequence

String getSequence()

fillAttributeMap

void fillAttributeMap(Map<String,Object> attributeValueMap)

Specified by:

fillAttributeMap in interface AttributeValuePairSupport

getNumberOfMeasurementValues

int getNumberOfMeasurementValues()

getMeasurementValuesSum

double getMeasurementValuesSum()

addAndMerge

void addAndMerge(ExperimentInterface toBeAdded)

mergeBiologicalReplicates

void mergeBiologicalReplicates(BackgroundTaskStatusProviderSupportingExternalCall status)