PathWayHandler (Vanted 2.8.3 API)

java.lang.Object

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.HelperClass

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.PathWayHandler

public class PathWayHandler
extends HelperClass

Constructor Summary

Constructors

Constructor Description

PathWayHandler(org.biopax.paxtools.model.Model model, Graph graph)
constructor for import

Method Summary

Modifier and Type	Method	Description
`ArrayList<MyPathWay>`	`getPathWays()`	returns all PathWays found by getPathWaysfromModel
`void`	`getPathWaysfromModel()`	use to write PathWays in an own data structure
`void`	`readPathwaysFromGraphAndWriteToModel()`	use while export to write PathWays into the model
`void`	`writePathWaysToGraph()`	use while import to write PathWays as attributes on the graph

Methods inherited from class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.HelperClass

returnAttributeByPath, returnAttributeByPath

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- PathWayHandler
  
  public PathWayHandler(org.biopax.paxtools.model.Model model, Graph graph)
  
  constructor for import
  
  Parameters:
  
  model -
Method Details
- getPathWaysfromModel
  
  public void getPathWaysfromModel()
  
  use to write PathWays in an own data structure
- getPathWays
  
  public ArrayList<MyPathWay> getPathWays()
  
  returns all PathWays found by getPathWaysfromModel
- writePathWaysToGraph
  
  public void writePathWaysToGraph()
  
  use while import to write PathWays as attributes on the graph
- readPathwaysFromGraphAndWriteToModel
  
  public void readPathwaysFromGraphAndWriteToModel()
  
  use while export to write PathWays into the model