BioPAX_OWL_Writer (Vanted 2.8.3 API)

java.lang.Object

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.HelperClass

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.biopax.BioPAX_OWL_Writer

All Implemented Interfaces:: OutputSerializer, Serializer

public class BioPAX_OWL_Writer
extends HelperClass
implements OutputSerializer

Takes a graph with a biochemical pathway, filters all attributes that could possibly belong to a BioPax-File and creates and OWL-File out of it

Author:: ricardo

Constructor Summary

Constructors

Constructor Description

BioPAX_OWL_Writer()

Method Summary

Modifier and Type	Method	Description
`String[]`	`getExtensions()`	The file extensions the serializer can read or write.
`String[]`	`getFileTypeDescriptions()`	The file type descriptions of the files the serializer can read or write.
`boolean`	`validFor(Graph g)`
`void`	`write(OutputStream stream, Graph g)`	Writes the contents of the given graph to a stream.

Methods inherited from class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.HelperClass

returnAttributeByPath, returnAttributeByPath

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- BioPAX_OWL_Writer
  
  public BioPAX_OWL_Writer()
Method Details
- getExtensions
  
  public String[] getExtensions()
  
  Description copied from interface: Serializer
  
  The file extensions the serializer can read or write.
  
  Specified by:
  
  getExtensions in interface Serializer
  
  Returns:
  
  DOCUMENT ME!
- getFileTypeDescriptions
  
  public String[] getFileTypeDescriptions()
  
  Description copied from interface: Serializer
  
  The file type descriptions of the files the serializer can read or write.
  
  Specified by:
  
  getFileTypeDescriptions in interface Serializer
  
  Returns:
  
  DOCUMENT ME!
- validFor
  
  public boolean validFor(Graph g)
  
  Specified by:
  
  validFor in interface OutputSerializer
  
  Parameters:
  
  g - The graph to be serialized
  
  Returns:
- write
  
  public void write(OutputStream stream, Graph g) throws IOException
  
  Description copied from interface: OutputSerializer
  
  Writes the contents of the given graph to a stream.
  
  Specified by:
  
  write in interface OutputSerializer
  
  Parameters:
  
  stream - The output stream to save the graph to.
  
  g - The graph to save.
  
  Throws:
  
  IOException