Package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml

Class KineticLawHelper

java.lang.Object
org.graffiti.event.AttributeAdapter
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.KineticLawHelper
All Implemented Interfaces:
EventListener, AttributeListener, TransactionListener
public class KineticLawHelper
extends AttributeAdapter

  • Constructor Details

    • KineticLawHelper

      public KineticLawHelper​(Graph g, Map<String,​List<Node>> reactionClones)
      Constructor. Initializes the graph
      Parameters:
      g - the graph where the information is read from

  • Method Details

    • addLocalParemeter

      public SBMLLocalParameter addLocalParemeter​(Graph g, String presentedAttributeName, String internAttributeName)

    • addLocalParameter

      public SBMLLocalParameter addLocalParameter​(Graph g, int localParameterCount)

    • setMetaId

      public void setMetaId​(Node reactionNode, String metaID)

    • isSetMetaID

      public Boolean isSetMetaID​(Node reactionNode)

    • getMetaID

      public String getMetaID​(Node reactionNode)

    • deleteMetaID

      public void deleteMetaID​(Node reactionNode)

    • setSBOTerm

      public void setSBOTerm​(Node reactionNode, String sboTerm)

    • getSBOTerm

      public String getSBOTerm​(Node reactionNode)

    • deleteSBOTerm

      public void deleteSBOTerm​(Node reactionNode)

    • isSetSBOTerm

      public Boolean isSetSBOTerm​(Node reactionNode)

    • setAnnotation

      public void setAnnotation​(Node reactionNode, org.sbml.jsbml.Annotation annotation)

    • isSetAnnotation

      public Boolean isSetAnnotation​(Node reactionNode)

    • deleteAnnotation

      public void deleteAnnotation​(Node reactionNode)

    • getAnnotation

      public org.sbml.jsbml.Annotation getAnnotation​(Node reactionNode)

    • setNonRDFAnnotation

      public void setNonRDFAnnotation​(Node reactionNode, org.sbml.jsbml.xml.XMLNode xmlNode)

    • isSetNonRDFAnnotation

      public Boolean isSetNonRDFAnnotation​(Node reactionNode)

    • deleteNonRDFAnnotation

      public void deleteNonRDFAnnotation​(Node reactionNode)

    • getNonRDFAnnotation

      public org.sbml.jsbml.xml.XMLNode getNonRDFAnnotation​(Node reactionNode)

    • setFunction

      public void setFunction​(Node reactionNode, String function)

    • setNotes

      public void setNotes​(Node reactionNode, String notes, org.sbml.jsbml.xml.XMLNode notesObj)

    • isSetNotes

      public Boolean isSetNotes​(Node reactionNode)

    • getNotes

      public org.sbml.jsbml.xml.XMLNode getNotes​(Node reactionNode)

    • deleteNotes

      public void deleteNotes​(Node reactionNode)

    • isSetFunction

      public Boolean isSetFunction​(Node reactionNode)

    • getFunction

      public String getFunction​(Node reactionNode)

    • postAttributeChanged

      public void postAttributeChanged​(AttributeEvent e)
      Description copied from interface: AttributeListener
      Called after an attribute has been changed.
      Specified by:
      postAttributeChanged in interface AttributeListener
      Overrides:
      postAttributeChanged in class AttributeAdapter
      Parameters:
      e - the AttributeEvent detailing the changes.