Uses of Interface
de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface
-
Uses of ExperimentInterface in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping
Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping with parameters of type ExperimentInterface Modifier and Type Method Description void
DataMapping. setExperimentData(ExperimentInterface md)
-
Uses of ExperimentInterface in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute
Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute that return ExperimentInterface Modifier and Type Method Description ExperimentInterface
XMLAttribute. getMappedData()
Constructors in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute with parameters of type ExperimentInterface Constructor Description XMLAttribute(String id, ExperimentInterface mappingDataList)
-
Uses of ExperimentInterface in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms
Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms that return types with arguments of type ExperimentInterface Modifier and Type Method Description static Collection<ExperimentInterface>
ExtractMappingDataAlgorithm. getExperiments(Collection<GraphElement> workNodes, boolean onlyOne, BackgroundTaskStatusProviderSupportingExternalCall status)
-
Uses of ExperimentInterface in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper
Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper that implement ExperimentInterface Modifier and Type Class Description class
Experiment
Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper that return ExperimentInterface Modifier and Type Method Description ExperimentInterface
ExperimentInterface. clone()
ExperimentInterface
ExperimentInterface. filter(Collection<String> validNames, Collection<String> validTimes)
ExperimentInterface
GraphElementHelper. getDataMappings()
ExperimentInterface
NodeHelper. getDataMappings()
static ExperimentInterface
Experiment. getExperiment(List<org.jdom2.Document> documents)
ExperimentInterface
NodeHelper. getMappingDataDocument(String substanceName, String measurementUnit, String experimentStart, String experimentName, String coordinator, String optRemark, String optSequence)
static ExperimentInterface
ExperimentConstructor. processData(String measuredSubstance, String measurementUnit, ArrayList<MemSample> memSamples, ArrayList<MemPlant> memPlants, String experimentStart, String experimentName, String coordinator, String optRemark, String optSequence)
Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper that return types with arguments of type ExperimentInterface Modifier and Type Method Description Collection<ExperimentInterface>
Experiment. split()
Collection<ExperimentInterface>
ExperimentInterface. split()
Collection<ExperimentInterface>
Experiment. splitOldStyle()
Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper with parameters of type ExperimentInterface Modifier and Type Method Description void
Experiment. addAll(ExperimentInterface m)
void
ExperimentInterface. addAll(ExperimentInterface m)
void
Experiment. addAndMerge(ExperimentInterface toBeAdded)
static void
Experiment. addAndMerge(ExperimentInterface result, ExperimentInterface toBeAdded)
Deprecated.void
ExperimentInterface. addAndMerge(ExperimentInterface toBeAdded)
static void
Substance. addAndMerge(ExperimentInterface result, SubstanceInterface tobeMerged)
static String[]
Experiment. getConditionsAsString(ExperimentInterface experimentData)
static ArrayList<Document>
Experiment. getDocuments(ExperimentInterface mappingDataList)
<experimentdata> <experiment experimentid="-1"> <experimentname>Gluthation</experimentname> <remark>SXD plants</remark> <coordinator>Mohammad Hajirezaei</coordinator> <excelfileid/> <importusername/> <importdate>Tue Mar 10 11:39:36 CET 2009</importdate> <startdate>Sun Jan 18 00:00:00 CET 2004</startdate> <measurements>92</measurements> <imagefiles>0</imagefiles> <sizekb>0</sizekb> </experiment> <measurements> <substance id="column 6" name="Cys"> ...static ArrayList<Document>
Experiment. getDocuments(ExperimentInterface mappingDataList, BackgroundTaskStatusProviderSupportingExternalCall status, boolean mergeExperimentsReturnOnlyOne)
static double
Experiment. getMeasurementValuesSum(ExperimentInterface md)
Deprecated.static int
Experiment. getNumberOfMeasurementValues(ExperimentInterface md)
Deprecated.static String
Experiment. getString(ExperimentInterface mappingDataList)
static ArrayList<String>
Experiment. getStrings(ExperimentInterface mappingDataList, BackgroundTaskStatusProviderSupportingExternalCall status, boolean mergeExperimentsReturnOnlyOne)
static String[]
Experiment. getTimes(ExperimentInterface experimentData)
static boolean
Experiment. isBiologicalAndTechnicalReplicateDataAvailable(ExperimentInterface md)
static boolean
Experiment. isReplicateDataMissing(ExperimentInterface md)
Constructors in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper with parameters of type ExperimentInterface Constructor Description Experiment(ExperimentInterface data)
-
Uses of ExperimentInterface in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe
Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe that return ExperimentInterface Modifier and Type Method Description ExperimentInterface
ExperimentDataInfoPane. getDocumentData()
ExperimentInterface
ProjectEntity. getDocumentData()
ExperimentInterface
ExperimentDataFileReader. getXMLdata(File excelFile, TableData myData, BackgroundTaskStatusProviderSupportingExternalCall statusProvider)
abstract ExperimentInterface
ExperimentDataFileReader. getXMLDataFromExcelTable(File excelFile, TableData myData, BackgroundTaskStatusProviderSupportingExternalCall statusProvider)
ExperimentInterface
GeneExpressionFileReader. getXMLDataFromExcelTable(File excelFile, TableData myData, BackgroundTaskStatusProviderSupportingExternalCall statusProvider)
Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe with parameters of type ExperimentInterface Modifier and Type Method Description JButton
AbstractAnnotationProvider. getButton(ExperimentInterface md, ExperimentDataInfoPane resultPane)
JButton
AnnotationProvider. getButton(ExperimentInterface md, ExperimentDataInfoPane resultPane)
static TableData
ExperimentDataFileWriter. getTableData(ExperimentInterface md)
static int
AlternativeIdentifierTableData. processAdditionaldentifiers(boolean processAllExistingIDs, boolean processAllNewIDs, TableData myData, ExperimentInterface md, BackgroundTaskStatusProviderSupportingExternalCall optStatus, double optStartProgress, double optEndProgress, StringBuilder statusMessage, boolean skipFirstRow, HashSet<Integer> ignoreColumns)
static int
AlternativeIdentifierTableData. processAdditionaldentifiers(boolean processAllExistingIDs, TableData myData, ExperimentInterface md, BackgroundTaskStatusProviderSupportingExternalCall optStatus, double optStartProgress, double optEndProgress, StringBuilder statusMessage, boolean skipFirstRow)
int
TableData. processAdditionaldentifiers(boolean processAllIDs, boolean processAllNewIDs, ExperimentInterface substanceNodes, BackgroundTaskStatusProviderSupportingExternalCall optStatus, double optStartProgress, double optEndProgress, StringBuilder statusMessage, boolean skipFirstRow, HashSet<Integer> ignoreColumns)
void
ExperimentDataProcessingManager. processData(ExperimentInterface mdsOrDocuments, AbstractExperimentDataProcessor pp, ActionEvent e, JComponent optSupplementaryPanel, List<Runnable> postProcessors)
void
ExperimentDataProcessingManager. processIncomingData(ExperimentInterface mdsOrDocuments)
void
ExperimentDataProcessingManager. processIncomingData(ExperimentInterface mdsOrDocuments, Class<ExperimentDataProcessor> processor)
void
ExperimentDataProcessingManager. processIncomingData(ExperimentInterface mdsOrDocuments, JComponent optSupplementaryPanel, List<Class<?>> optIgnoredProcessors, HashMap<Class<?>,List<Runnable>> postprocessors)
void
ExperimentDataProcessingManager. processIncomingData(ExperimentInterface mdsOrDocuments, JComponent optSupplementaryPanel, List<Class<?>> optIgnoredProcessors, HashMap<Class<?>,List<Runnable>> postprocessors, Class<ExperimentDataProcessor> optUseOnlyThisSpecificProcessor)
void
ExperimentDataPresenter. processReceivedData(TableData td, String experimentName, ExperimentInterface md, JComponent gui)
void
TabDBE. processReceivedData(TableData td, String experimentName, ExperimentInterface doc, JComponent gui)
boolean
AnnotationProvider. requestUserData(ExperimentInterface expdata)
void
RunnableWithMappingData. setExperimenData(ExperimentInterface experiment)
void
RunnableWithXMLexperimentData. setExperimenData(ExperimentInterface doc)
abstract void
AbstractExperimentDataProcessor. setExperimentData(ExperimentInterface mappingData)
void
ExperimentDataProcessor. setExperimentData(ExperimentInterface doc)
Perform data mapping (or something else).void
PutIntoSidePanel. setExperimentData(ExperimentInterface md)
static void
ExperimentDataInfoPane. showXMLdata(ExperimentInterface md)
void
ExperimentDataInfoPane. updateGUIforUpdatedExperimentData(String experimentName, ExperimentInterface mdNew, JComponent gui)
static void
ExperimentDataFileWriter. writeExcel(File excelfile, ExperimentInterface md)
static void
ExperimentDataFileWriter. writeExcel(File excelfile, ExperimentInterface md, boolean transposed)
Export the givenExperimentInterface
to the givenFile
.Constructors in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe with parameters of type ExperimentInterface Constructor Description ExperimentDataInfoPane(TableData td, ExperimentInterface doc, JTabbedPane parentPane, List<ExperimentDataInfoPane> shownExpPanes, JComponent gui)
ProjectEntity(String expTitle, ExperimentInterface md)
ProjectEntity(String expTitle, ExperimentInterface md, JComponent gui)
-
Uses of ExperimentInterface in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model
Constructors in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model with parameters of type ExperimentInterface Constructor Description XMLdataTablePane(ExperimentInterface experiment, JTabbedPane parentPane)
-
Uses of ExperimentInterface in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes
Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes that return ExperimentInterface Modifier and Type Method Description static ExperimentInterface
Experiment2GraphHelper. getMappedDataListFromGraphElement(GraphElement graphElement)
Get a list of mapped xml data that has been assigned to a node (or other GraphElement).static ExperimentInterface
Experiment2GraphHelper. getMappedDataListFromGraphElement(GraphElement graphElement, String mapVarName)
Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes with parameters of type ExperimentInterface Modifier and Type Method Description MapResult
Experiment2GraphHelper. mapDataToGraphElements(boolean mapAlsoInCaseOfEmptyDataset, ExperimentInterface md, Collection<GraphElement> targetGraphElements, Graph addNewGraphElementsToThisGraph, boolean doUserMapping, String diagramStyle, int minimumLines, boolean considerEnzymeDb, boolean considerMappingToKEGGmapNodes, boolean selectResult)
MapResult
Experiment2GraphHelper. mapDataToGraphElements(boolean mapAlsoInCaseOfEmptyDataset, ExperimentInterface mappingData, Collection<GraphElement> targetGraphElements, Graph addNewGraphElementsToThisGraph, boolean doUserMapping, String diagramStyle, int minimumLines, int diagramsPerRow, boolean considerEnzymeDb, boolean considerMappingToKEGGmapNodes, boolean selectResult)
Maps the data from the XML document to the list of nodes -
Uses of ExperimentInterface in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart
Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart that return ExperimentInterface Modifier and Type Method Description ExperimentInterface
DataDragAndDropHandler. getProcessingResults()