Package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper

Class Condition

java.lang.Object

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

All Implemented Interfaces:

AttributeValuePairSupport, ConditionInterface, MappingDataEntity, Comparable<ConditionInterface>, Iterable<SampleInterface>, Collection<SampleInterface>, Set<SampleInterface>

public class Condition
extends Object
implements ConditionInterface

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	Condition.ConditionInfo

Field Summary

Fields inherited from interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MappingDataEntity

ANNO_DIV

Constructor Summary

Constructors

Constructor	Description
Condition(SubstanceInterface md)
Condition(SubstanceInterface s, Map<String,String> attributemap)

Method Summary

Modifier and Type	Method	Description
boolean	add(SampleInterface arg0)
boolean	addAll(Collection<? extends SampleInterface> arg0)
SampleInterface	addAndMerge(SampleInterface samplenew)
double	calcAlpha()
double	calcBeta()
void	clear()
ConditionInterface	clone(SubstanceInterface parent)
int	compareTo(ConditionInterface otherSeries)
boolean	contains(Object arg0)
boolean	containsAll(Collection<?> arg0)
boolean	equals(Object obj)
void	fillAttributeMap(Map<String,Object> attributeValueMap)
int	getConditionId()
String	getConditionName()
String	getConditionName(boolean oldStyleIgnoringGrowthcondition)
String	getCoordinator()
String	getDatabase()
String	getExpAndConditionName()
String	getExperimentCoordinator()
String	getExperimentDatabaseId()
ExperimentHeaderInterface	getExperimentHeader()
void	getExperimentHeader(StringBuilder r, int measurementcount)
Date	getExperimentImportdate()
String	getExperimentName()
String	getExperimentRemark()
Date	getExperimentStartDate()
String	getExperimentType()
String	getGenotype()
String	getGrowthconditions()
ArrayList<MyComparableDataPoint>	getMCDPs()
Collection<MyComparableDataPoint>	getMeanMCDPs()
ArrayList<Integer>	getMeanTimePoints()
ArrayList<String>	getMeanTimeUnits()
ArrayList<Double>	getMeanValues()
String	getName()
SubstanceInterface	getParentSubstance()
int	getRowId()
String	getSequence()
int	getSeriesId()
String	getSpecies()
void	getString(StringBuilder r)
void	getStringForDocument(StringBuilder r)
void	getStringOfChildren(StringBuilder r)
static double	getSum(ArrayList<Double> values)
void	getTimes(Set<Integer> times)
String	getTreatment()
String	getVariety()
void	getXMLAttributeString(StringBuilder r)
void	getXMLAttributeStringForDocument(StringBuilder r)
int	hashCode()
boolean	isEmpty()
Iterator<SampleInterface>	iterator()
boolean	remove(Object arg0)
boolean	removeAll(Collection<?> arg0)
boolean	retainAll(Collection<?> arg0)
void	setAttribute(org.jdom2.Attribute attr)
boolean	setData(org.jdom2.Element condition)
boolean	setData(org.jdom2.Element conditionElement, org.jdom2.Element experimentChildElement)
void	setDatabase(String database)
void	setDataOfChildElement(org.jdom2.Element childElement)
void	setExperimentCoordinator(String experimentCoordinator)
void	setExperimentDatabaseId(String databaseId)
void	setExperimentImportdate(Date experimentimportdate)
void	setExperimentInfo(ExperimentHeaderInterface header)
void	setExperimentName(String experimentName)
void	setExperimentRemark(String experimentRemark)
void	setExperimentStartDate(Date experimentStartDate)
void	setExperimentType(String experimenttype)
void	setField(Condition.ConditionInfo field, String value)
void	setGenotype(String genotype)
void	setGrowthconditions(String growthconditions)
void	setParent(SubstanceInterface md)
void	setRowId(int rowId)
void	setSequence(String sequence)
void	setSpecies(String species)
void	setTreatment(String treatment)
void	setVariety(String variety)
int	size()
Object[]	toArray()
<T> T[]	toArray(T[] arg0)
String	toString()

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.util.Collection

parallelStream, removeIf, stream, toArray

Methods inherited from interface java.lang.Iterable

forEach

Methods inherited from interface java.util.Set

spliterator

Constructor Details

Condition

public Condition(SubstanceInterface md)

Condition

public Condition(SubstanceInterface s,
Map<String,String> attributemap)

Method Details

getString

public void getString(StringBuilder r)

Specified by:

getString in interface ConditionInterface

getXMLAttributeString

public void getXMLAttributeString(StringBuilder r)

Specified by:

getXMLAttributeString in interface ConditionInterface

Specified by:

getXMLAttributeString in interface MappingDataEntity

getStringOfChildren

public void getStringOfChildren(StringBuilder r)

Specified by:

getStringOfChildren in interface ConditionInterface

Specified by:

getStringOfChildren in interface MappingDataEntity

getExpAndConditionName

public String getExpAndConditionName()

Specified by:

getExpAndConditionName in interface ConditionInterface

toString

public String toString()

Specified by:

toString in interface ConditionInterface

Overrides:

toString in class Object

getConditionName

public String getConditionName()

Specified by:

getConditionName in interface ConditionInterface

getConditionName

public String getConditionName(boolean oldStyleIgnoringGrowthcondition)

getTimes

public void getTimes(Set<Integer> times)

Specified by:

getTimes in interface ConditionInterface

getExperimentName

public String getExperimentName()

Specified by:

getExperimentName in interface ConditionInterface

getDatabase

public String getDatabase()

Specified by:

getDatabase in interface ConditionInterface

getCoordinator

public String getCoordinator()

Specified by:

getCoordinator in interface ConditionInterface

getExperimentStartDate

public Date getExperimentStartDate()

Specified by:

getExperimentStartDate in interface ConditionInterface

getConditionId

public int getConditionId()

Specified by:

getConditionId in interface ConditionInterface

getMeanMCDPs

public Collection<MyComparableDataPoint> getMeanMCDPs()

Specified by:

getMeanMCDPs in interface ConditionInterface

getMCDPs

public ArrayList<MyComparableDataPoint> getMCDPs()

Specified by:

getMCDPs in interface ConditionInterface

getMeanValues

public ArrayList<Double> getMeanValues()

Specified by:

getMeanValues in interface ConditionInterface

getMeanTimePoints

public ArrayList<Integer> getMeanTimePoints()

Specified by:

getMeanTimePoints in interface ConditionInterface

getMeanTimeUnits

public ArrayList<String> getMeanTimeUnits()

Specified by:

getMeanTimeUnits in interface ConditionInterface

calcAlpha

public double calcAlpha()

Specified by:

calcAlpha in interface ConditionInterface

calcBeta

public double calcBeta()

Specified by:

calcBeta in interface ConditionInterface

getSum

public static double getSum(ArrayList<Double> values)

getSpecies

public String getSpecies()

Specified by:

getSpecies in interface ConditionInterface

getGenotype

public String getGenotype()

Specified by:

getGenotype in interface ConditionInterface

getTreatment

public String getTreatment()

Specified by:

getTreatment in interface ConditionInterface

getSeriesId

public int getSeriesId()

Specified by:

getSeriesId in interface ConditionInterface

setData

public boolean setData(org.jdom2.Element condition)

Specified by:

setData in interface ConditionInterface

Specified by:

setData in interface MappingDataEntity

setData

public boolean setData(org.jdom2.Element conditionElement,
org.jdom2.Element experimentChildElement)

Specified by:

setData in interface ConditionInterface

getName

public String getName()

Specified by:

getName in interface ConditionInterface

setAttribute

public void setAttribute(org.jdom2.Attribute attr)

Specified by:

setAttribute in interface ConditionInterface

Specified by:

setAttribute in interface MappingDataEntity

setDataOfChildElement

public void setDataOfChildElement(org.jdom2.Element childElement)

Specified by:

setDataOfChildElement in interface ConditionInterface

Specified by:

setDataOfChildElement in interface MappingDataEntity

setExperimentName

public void setExperimentName(String experimentName)

Specified by:

setExperimentName in interface ConditionInterface

setDatabase

public void setDatabase(String database)

Specified by:

setDatabase in interface ConditionInterface

setExperimentCoordinator

public void setExperimentCoordinator(String experimentCoordinator)

Specified by:

setExperimentCoordinator in interface ConditionInterface

setExperimentDatabaseId

public void setExperimentDatabaseId(String databaseId)

Specified by:

setExperimentDatabaseId in interface ConditionInterface

getExperimentDatabaseId

public String getExperimentDatabaseId()

Specified by:

getExperimentDatabaseId in interface ConditionInterface

getExperimentCoordinator

public String getExperimentCoordinator()

Specified by:

getExperimentCoordinator in interface ConditionInterface

setExperimentStartDate

public void setExperimentStartDate(Date experimentStartDate)

Specified by:

setExperimentStartDate in interface ConditionInterface

setSpecies

public void setSpecies(String species)

Specified by:

setSpecies in interface ConditionInterface

setGenotype

public void setGenotype(String genotype)

Specified by:

setGenotype in interface ConditionInterface

setGrowthconditions

public void setGrowthconditions(String growthconditions)

Specified by:

setGrowthconditions in interface ConditionInterface

getGrowthconditions

public String getGrowthconditions()

Specified by:

getGrowthconditions in interface ConditionInterface

setTreatment

public void setTreatment(String treatment)

Specified by:

setTreatment in interface ConditionInterface

getExperimentType

public String getExperimentType()

Specified by:

getExperimentType in interface ConditionInterface

getSequence

public String getSequence()

Specified by:

getSequence in interface ConditionInterface

setVariety

public void setVariety(String variety)

Specified by:

setVariety in interface ConditionInterface

getVariety

public String getVariety()

Specified by:

getVariety in interface ConditionInterface

setExperimentType

public void setExperimentType(String experimenttype)

Specified by:

setExperimentType in interface ConditionInterface

setSequence

public void setSequence(String sequence)

Specified by:

setSequence in interface ConditionInterface

getExperimentHeader

public void getExperimentHeader(StringBuilder r,
int measurementcount)

Specified by:

getExperimentHeader in interface ConditionInterface

getParentSubstance

public SubstanceInterface getParentSubstance()

Specified by:

getParentSubstance in interface ConditionInterface

getXMLAttributeStringForDocument

public void getXMLAttributeStringForDocument(StringBuilder r)

Specified by:

getXMLAttributeStringForDocument in interface ConditionInterface

getStringForDocument

public void getStringForDocument(StringBuilder r)

Specified by:

getStringForDocument in interface ConditionInterface

compareTo

public int compareTo(ConditionInterface otherSeries)

Specified by:

compareTo in interface Comparable<ConditionInterface>

Specified by:

compareTo in interface ConditionInterface

setRowId

public void setRowId(int rowId)

Specified by:

setRowId in interface ConditionInterface

getRowId

public int getRowId()

Specified by:

getRowId in interface ConditionInterface

setExperimentImportdate

public void setExperimentImportdate(Date experimentimportdate)

Specified by:

setExperimentImportdate in interface ConditionInterface

getExperimentImportdate

public Date getExperimentImportdate()

Specified by:

getExperimentImportdate in interface ConditionInterface

setExperimentRemark

public void setExperimentRemark(String experimentRemark)

Specified by:

setExperimentRemark in interface ConditionInterface

getExperimentRemark

public String getExperimentRemark()

Specified by:

getExperimentRemark in interface ConditionInterface

addAndMerge

public SampleInterface addAndMerge(SampleInterface samplenew)

Specified by:

addAndMerge in interface ConditionInterface

setParent

public void setParent(SubstanceInterface md)

Specified by:

setParent in interface ConditionInterface

setExperimentInfo

public void setExperimentInfo(ExperimentHeaderInterface header)

Specified by:

setExperimentInfo in interface ConditionInterface

getExperimentHeader

public ExperimentHeaderInterface getExperimentHeader()

Specified by:

getExperimentHeader in interface ConditionInterface

add

public boolean add(SampleInterface arg0)

Specified by:

add in interface Collection<SampleInterface>

Specified by:

add in interface ConditionInterface

Specified by:

add in interface Set<SampleInterface>

addAll

public boolean addAll(Collection<? extends SampleInterface> arg0)

Specified by:

addAll in interface Collection<SampleInterface>

Specified by:

addAll in interface ConditionInterface

Specified by:

addAll in interface Set<SampleInterface>

clear

public void clear()

Specified by:

clear in interface Collection<SampleInterface>

Specified by:

clear in interface ConditionInterface

Specified by:

clear in interface Set<SampleInterface>

contains

public boolean contains(Object arg0)

Specified by:

contains in interface Collection<SampleInterface>

Specified by:

contains in interface ConditionInterface

Specified by:

contains in interface Set<SampleInterface>

containsAll

public boolean containsAll(Collection<?> arg0)

Specified by:

containsAll in interface Collection<SampleInterface>

Specified by:

containsAll in interface ConditionInterface

Specified by:

containsAll in interface Set<SampleInterface>

isEmpty

public boolean isEmpty()

Specified by:

isEmpty in interface Collection<SampleInterface>

Specified by:

isEmpty in interface ConditionInterface

Specified by:

isEmpty in interface Set<SampleInterface>

remove

public boolean remove(Object arg0)

Specified by:

remove in interface Collection<SampleInterface>

Specified by:

remove in interface ConditionInterface

Specified by:

remove in interface Set<SampleInterface>

removeAll

public boolean removeAll(Collection<?> arg0)

Specified by:

removeAll in interface Collection<SampleInterface>

Specified by:

removeAll in interface ConditionInterface

Specified by:

removeAll in interface Set<SampleInterface>

retainAll

public boolean retainAll(Collection<?> arg0)

Specified by:

retainAll in interface Collection<SampleInterface>

Specified by:

retainAll in interface ConditionInterface

Specified by:

retainAll in interface Set<SampleInterface>

size

public int size()

Specified by:

size in interface Collection<SampleInterface>

Specified by:

size in interface ConditionInterface

Specified by:

size in interface Set<SampleInterface>

toArray

public Object[] toArray()

Specified by:

toArray in interface Collection<SampleInterface>

Specified by:

toArray in interface ConditionInterface

Specified by:

toArray in interface Set<SampleInterface>

toArray

public <T> T[] toArray(T[] arg0)

Specified by:

toArray in interface Collection<SampleInterface>

Specified by:

toArray in interface ConditionInterface

Specified by:

toArray in interface Set<SampleInterface>

iterator

public Iterator<SampleInterface> iterator()

Specified by:

iterator in interface Collection<SampleInterface>

Specified by:

iterator in interface ConditionInterface

Specified by:

iterator in interface Iterable<SampleInterface>

Specified by:

iterator in interface Set<SampleInterface>

fillAttributeMap

public void fillAttributeMap(Map<String,Object> attributeValueMap)

Specified by:

fillAttributeMap in interface AttributeValuePairSupport

Specified by:

fillAttributeMap in interface ConditionInterface

setField

public void setField(Condition.ConditionInfo field,
String value)

equals

public boolean equals(Object obj)

Specified by:

equals in interface Collection<SampleInterface>

Specified by:

equals in interface ConditionInterface

Specified by:

equals in interface Set<SampleInterface>

Overrides:

equals in class Object

hashCode

public int hashCode()

Specified by:

hashCode in interface Collection<SampleInterface>

Specified by:

hashCode in interface ConditionInterface

Specified by:

hashCode in interface Set<SampleInterface>

Overrides:

hashCode in class Object

clone

public ConditionInterface clone(SubstanceInterface parent)

Specified by:

clone in interface ConditionInterface