Package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper

Interface SampleInterface

All Superinterfaces:

AttributeValuePairSupport, Collection<NumericMeasurementInterface>, Comparable<SampleInterface>, Iterable<NumericMeasurementInterface>, MappingDataEntity

All Known Implementing Classes:

Sample

public interface SampleInterface
extends MappingDataEntity, Comparable<SampleInterface>, Collection<NumericMeasurementInterface>

Field Summary

Fields inherited from interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MappingDataEntity

ANNO_DIV

Method Summary

Modifier and Type	Method	Description
boolean	add(NumericMeasurementInterface e)
boolean	addAll(Collection<? extends NumericMeasurementInterface> c)
double	calcMean()
void	clear()
SampleInterface	clone(ConditionInterface parent)
int	compareTo(SampleInterface sd)
boolean	contains(Object o)
boolean	containsAll(Collection<?> c)
boolean	equals(Object obj)
void	fillAttributeMap(Map<String,Object> attributeValueMap)
String	getAverageUnit()
Double[]	getDataList()
DataMappingId	getFullId()	Get a id, based on experiment name, plant name and genotype, time point and time unit This can be used to find similar data entries for example for other substances.
String	getMeasurementtool()
ConditionInterface	getParentCondition()
long	getRowId()
SampleAverageInterface	getSampleAverage()
String	getSampleTime()
void	getString(StringBuilder r)
void	getStringOfChildren(StringBuilder r)
int	getTime()
String	getTimeUnit()
TtestInfo	getTtestInfo()
void	getXMLAttributeString(StringBuilder r)
int	hashCode()
boolean	isEmpty()
Iterator<NumericMeasurementInterface>	iterator()
void	recalculateSampleAverage()
boolean	remove(Object o)	Don't forget to call updateSampleAverage after removing a measurement.
boolean	removeAll(Collection<?> c)
boolean	retainAll(Collection<?> c)
void	setAttribute(org.jdom2.Attribute attr)
boolean	setData(org.jdom2.Element sampleElement)
void	setDataOfChildElement(org.jdom2.Element childElement)
void	setMeasurementtool(String measurementtool)
void	setParent(ConditionInterface series)
void	setRowId(long rowId)
void	setSampleAverage(SampleAverageInterface average)
void	setSampleTtestInfo(TtestInfo info)
void	setTime(int time)
void	setTimeUnit(String timeUnit)
void	setTtestInfo(TtestInfo ttestInfo)
int	size()
Object[]	toArray()
<T> T[]	toArray(T[] a)

Methods inherited from interface java.util.Collection

parallelStream, removeIf, spliterator, stream, toArray

Methods inherited from interface java.lang.Iterable

forEach

Method Details

getString

void getString(StringBuilder r)

getXMLAttributeString

void getXMLAttributeString(StringBuilder r)

Specified by:

getXMLAttributeString in interface MappingDataEntity

getStringOfChildren

void getStringOfChildren(StringBuilder r)

Specified by:

getStringOfChildren in interface MappingDataEntity

getParentCondition

ConditionInterface getParentCondition()

setSampleTtestInfo

void setSampleTtestInfo(TtestInfo info)

getSampleTime

String getSampleTime()

getDataList

Double[] getDataList()

getSampleAverage

SampleAverageInterface getSampleAverage()

setSampleAverage

void setSampleAverage(SampleAverageInterface average)

getTimeUnit

String getTimeUnit()

getFullId

DataMappingId getFullId()

Get a id, based on experiment name, plant name and genotype, time point and time unit This can be used to find similar data entries for example for other substances. If this id and additionally the replicate ID matches, two values from two substances may be comparable.

Returns:

A id, which may be used to compare the data point with other data points from other substances.

compareTo

int compareTo(SampleInterface sd)

Specified by:

compareTo in interface Comparable<SampleInterface>

recalculateSampleAverage

void recalculateSampleAverage()

getTtestInfo

TtestInfo getTtestInfo()

setData

boolean setData(org.jdom2.Element sampleElement)

Specified by:

setData in interface MappingDataEntity

calcMean

double calcMean()

setAttribute

void setAttribute(org.jdom2.Attribute attr)

Specified by:

setAttribute in interface MappingDataEntity

setDataOfChildElement

void setDataOfChildElement(org.jdom2.Element childElement)

Specified by:

setDataOfChildElement in interface MappingDataEntity

setMeasurementtool

void setMeasurementtool(String measurementtool)

getMeasurementtool

String getMeasurementtool()

setTimeUnit

void setTimeUnit(String timeUnit)

setTime

void setTime(int time)

getTime

int getTime()

setRowId

void setRowId(long rowId)

getRowId

long getRowId()

setTtestInfo

void setTtestInfo(TtestInfo ttestInfo)

setParent

void setParent(ConditionInterface series)

getAverageUnit

String getAverageUnit()

add

boolean add(NumericMeasurementInterface e)

Specified by:

add in interface Collection<NumericMeasurementInterface>

addAll

boolean addAll(Collection<? extends NumericMeasurementInterface> c)

Specified by:

addAll in interface Collection<NumericMeasurementInterface>

clear

void clear()

Specified by:

clear in interface Collection<NumericMeasurementInterface>

contains

boolean contains(Object o)

Specified by:

contains in interface Collection<NumericMeasurementInterface>

containsAll

boolean containsAll(Collection<?> c)

Specified by:

containsAll in interface Collection<NumericMeasurementInterface>

isEmpty

boolean isEmpty()

Specified by:

isEmpty in interface Collection<NumericMeasurementInterface>

remove

boolean remove(Object o)

Don't forget to call updateSampleAverage after removing a measurement.

Specified by:

remove in interface Collection<NumericMeasurementInterface>

removeAll

boolean removeAll(Collection<?> c)

Specified by:

removeAll in interface Collection<NumericMeasurementInterface>

retainAll

boolean retainAll(Collection<?> c)

Specified by:

retainAll in interface Collection<NumericMeasurementInterface>

size

int size()

Specified by:

size in interface Collection<NumericMeasurementInterface>

toArray

Object[] toArray()

Specified by:

toArray in interface Collection<NumericMeasurementInterface>

toArray

<T> T[] toArray(T[] a)

Specified by:

toArray in interface Collection<NumericMeasurementInterface>

iterator

Iterator<NumericMeasurementInterface> iterator()

Specified by:

iterator in interface Collection<NumericMeasurementInterface>

Specified by:

iterator in interface Iterable<NumericMeasurementInterface>

fillAttributeMap

void fillAttributeMap(Map<String,Object> attributeValueMap)

Specified by:

fillAttributeMap in interface AttributeValuePairSupport

equals

boolean equals(Object obj)

Specified by:

equals in interface Collection<NumericMeasurementInterface>

Overrides:

equals in class Object

hashCode

int hashCode()

Specified by:

hashCode in interface Collection<NumericMeasurementInterface>

Overrides:

hashCode in class Object

clone

SampleInterface clone(ConditionInterface parent)