Package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper

Class Sample

java.lang.Object

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample

All Implemented Interfaces:

AttributeValuePairSupport, MappingDataEntity, SampleInterface, Comparable<SampleInterface>, Iterable<NumericMeasurementInterface>, Collection<NumericMeasurementInterface>

public class Sample
extends Object
implements SampleInterface

Field Summary

Fields

Modifier and Type	Field	Description
static String	UNSPECIFIED_TIME_STRING

Fields inherited from interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MappingDataEntity

ANNO_DIV

Constructor Summary

Constructors

Constructor	Description
Sample(ConditionInterface parent)

Method Summary

Modifier and Type	Method	Description
boolean	add(NumericMeasurementInterface e)
boolean	addAll(Collection<? extends NumericMeasurementInterface> c)
double	calcMean()
void	clear()
SampleInterface	clone(ConditionInterface parent)
int	compareTo(SampleInterface sd)
boolean	contains(Object o)
boolean	containsAll(Collection<?> c)
boolean	equals(Object obj)
void	fillAttributeMap(Map<String,Object> attributeValueMap)
String	getAverageUnit()
Double[]	getDataList()
DataMappingId	getFullId()	Get a id, based on experiment name, plant name and genotype, time point and time unit This can be used to find similar data entries for example for other substances.
String	getMeasurementtool()
ConditionInterface	getParentCondition()
long	getRowId()
SampleAverageInterface	getSampleAverage()
String	getSampleTime()
void	getString(StringBuilder r)
void	getStringOfChildren(StringBuilder r)
int	getTime()
String	getTimeUnit()
TtestInfo	getTtestInfo()
void	getXMLAttributeString(StringBuilder r)
int	hashCode()
boolean	isEmpty()
Iterator<NumericMeasurementInterface>	iterator()
void	recalculateSampleAverage()
boolean	remove(Object o)	Don't forget to call updateSampleAverage after removing a measurement.
boolean	removeAll(Collection<?> c)
boolean	retainAll(Collection<?> c)
void	setAttribute(org.jdom2.Attribute attr)
boolean	setData(org.jdom2.Element sampleElement)
void	setDataOfChildElement(org.jdom2.Element childElement)
void	setMeasurementtool(String measurementtool)
void	setParent(ConditionInterface series)
void	setRowId(long rowId)
void	setSampleAverage(SampleAverageInterface average)
void	setSampleTtestInfo(TtestInfo info)
void	setTime(int time)
void	setTimeUnit(String timeUnit)
void	setTtestInfo(TtestInfo ttestInfo)
int	size()
Object[]	toArray()
<T> T[]	toArray(T[] a)
String	toString()

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.util.Collection

parallelStream, removeIf, spliterator, stream, toArray

Methods inherited from interface java.lang.Iterable

forEach

Field Details

UNSPECIFIED_TIME_STRING

public static final String UNSPECIFIED_TIME_STRING

See Also:

Constant Field Values

Constructor Details

Sample

public Sample(ConditionInterface parent)

Method Details

toString

public String toString()

Overrides:

toString in class Object

getString

public void getString(StringBuilder r)

Specified by:

getString in interface SampleInterface

getXMLAttributeString

public void getXMLAttributeString(StringBuilder r)

Specified by:

getXMLAttributeString in interface MappingDataEntity

Specified by:

getXMLAttributeString in interface SampleInterface

getStringOfChildren

public void getStringOfChildren(StringBuilder r)

Specified by:

getStringOfChildren in interface MappingDataEntity

Specified by:

getStringOfChildren in interface SampleInterface

getParentCondition

public ConditionInterface getParentCondition()

Specified by:

getParentCondition in interface SampleInterface

setSampleTtestInfo

public void setSampleTtestInfo(TtestInfo info)

Specified by:

setSampleTtestInfo in interface SampleInterface

getSampleTime

public String getSampleTime()

Specified by:

getSampleTime in interface SampleInterface

getDataList

public Double[] getDataList()

Specified by:

getDataList in interface SampleInterface

getSampleAverage

public SampleAverageInterface getSampleAverage()

Specified by:

getSampleAverage in interface SampleInterface

setSampleAverage

public void setSampleAverage(SampleAverageInterface average)

Specified by:

setSampleAverage in interface SampleInterface

getTimeUnit

public String getTimeUnit()

Specified by:

getTimeUnit in interface SampleInterface

getFullId

public DataMappingId getFullId()

Get a id, based on experiment name, plant name and genotype, time point and time unit This can be used to find similar data entries for example for other substances. If this id and additionally the replicate ID matches, two values from two substances may be comparable.

Specified by:

getFullId in interface SampleInterface

Returns:

A id, which may be used to compare the data point with other data points from other substances.

recalculateSampleAverage

public void recalculateSampleAverage()

Specified by:

recalculateSampleAverage in interface SampleInterface

getTtestInfo

public TtestInfo getTtestInfo()

Specified by:

getTtestInfo in interface SampleInterface

setData

public boolean setData(org.jdom2.Element sampleElement)

Specified by:

setData in interface MappingDataEntity

Specified by:

setData in interface SampleInterface

calcMean

public double calcMean()

Specified by:

calcMean in interface SampleInterface

setAttribute

public void setAttribute(org.jdom2.Attribute attr)

Specified by:

setAttribute in interface MappingDataEntity

Specified by:

setAttribute in interface SampleInterface

setDataOfChildElement

public void setDataOfChildElement(org.jdom2.Element childElement)

Specified by:

setDataOfChildElement in interface MappingDataEntity

Specified by:

setDataOfChildElement in interface SampleInterface

setMeasurementtool

public void setMeasurementtool(String measurementtool)

Specified by:

setMeasurementtool in interface SampleInterface

getMeasurementtool

public String getMeasurementtool()

Specified by:

getMeasurementtool in interface SampleInterface

setTimeUnit

public void setTimeUnit(String timeUnit)

Specified by:

setTimeUnit in interface SampleInterface

setTime

public void setTime(int time)

Specified by:

setTime in interface SampleInterface

getTime

public int getTime()

Specified by:

getTime in interface SampleInterface

setRowId

public void setRowId(long rowId)

Specified by:

setRowId in interface SampleInterface

getRowId

public long getRowId()

Specified by:

getRowId in interface SampleInterface

setTtestInfo

public void setTtestInfo(TtestInfo ttestInfo)

Specified by:

setTtestInfo in interface SampleInterface

setParent

public void setParent(ConditionInterface series)

Specified by:

setParent in interface SampleInterface

getAverageUnit

public String getAverageUnit()

Specified by:

getAverageUnit in interface SampleInterface

add

public boolean add(NumericMeasurementInterface e)

Specified by:

add in interface Collection<NumericMeasurementInterface>

Specified by:

add in interface SampleInterface

addAll

public boolean addAll(Collection<? extends NumericMeasurementInterface> c)

Specified by:

addAll in interface Collection<NumericMeasurementInterface>

Specified by:

addAll in interface SampleInterface

clear

public void clear()

Specified by:

clear in interface Collection<NumericMeasurementInterface>

Specified by:

clear in interface SampleInterface

contains

public boolean contains(Object o)

Specified by:

contains in interface Collection<NumericMeasurementInterface>

Specified by:

contains in interface SampleInterface

containsAll

public boolean containsAll(Collection<?> c)

Specified by:

containsAll in interface Collection<NumericMeasurementInterface>

Specified by:

containsAll in interface SampleInterface

isEmpty

public boolean isEmpty()

Specified by:

isEmpty in interface Collection<NumericMeasurementInterface>

Specified by:

isEmpty in interface SampleInterface

remove

public boolean remove(Object o)

Don't forget to call updateSampleAverage after removing a measurement.

Specified by:

remove in interface Collection<NumericMeasurementInterface>

Specified by:

remove in interface SampleInterface

removeAll

public boolean removeAll(Collection<?> c)

Specified by:

removeAll in interface Collection<NumericMeasurementInterface>

Specified by:

removeAll in interface SampleInterface

retainAll

public boolean retainAll(Collection<?> c)

Specified by:

retainAll in interface Collection<NumericMeasurementInterface>

Specified by:

retainAll in interface SampleInterface

size

public int size()

Specified by:

size in interface Collection<NumericMeasurementInterface>

Specified by:

size in interface SampleInterface

toArray

public Object[] toArray()

Specified by:

toArray in interface Collection<NumericMeasurementInterface>

Specified by:

toArray in interface SampleInterface

toArray

public <T> T[] toArray(T[] a)

Specified by:

toArray in interface Collection<NumericMeasurementInterface>

Specified by:

toArray in interface SampleInterface

iterator

public Iterator<NumericMeasurementInterface> iterator()

Specified by:

iterator in interface Collection<NumericMeasurementInterface>

Specified by:

iterator in interface Iterable<NumericMeasurementInterface>

Specified by:

iterator in interface SampleInterface

fillAttributeMap

public void fillAttributeMap(Map<String,Object> attributeValueMap)

Specified by:

fillAttributeMap in interface AttributeValuePairSupport

Specified by:

fillAttributeMap in interface SampleInterface

compareTo

public int compareTo(SampleInterface sd)

Specified by:

compareTo in interface Comparable<SampleInterface>

Specified by:

compareTo in interface SampleInterface

equals

public boolean equals(Object obj)

Specified by:

equals in interface Collection<NumericMeasurementInterface>

Specified by:

equals in interface SampleInterface

Overrides:

equals in class Object

hashCode

public int hashCode()

Specified by:

hashCode in interface Collection<NumericMeasurementInterface>

Specified by:

hashCode in interface SampleInterface

Overrides:

hashCode in class Object

clone

public SampleInterface clone(ConditionInterface parent)

Specified by:

clone in interface SampleInterface