Package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg

Class KeggPathwayEntry

java.lang.Object

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggPathwayEntry

All Implemented Interfaces:

Comparable<Object>

public class KeggPathwayEntry
extends Object
implements Comparable<Object>

Author:

Christian Klukas To change the template for this generated type comment go to Window>Preferences>Java>Code Generation>Code and Comments

Constructor Summary

Constructors

Constructor	Description
KeggPathwayEntry(KeggPathwayEntry copyThisEntry, boolean colorEnzymesAndUseReferencePathway)
KeggPathwayEntry(InputStream inputStream)
KeggPathwayEntry(String name, boolean stripOrganismName, String mapName, String[] group)

Method Summary

Modifier and Type	Method	Description
int	compareTo(Object o)
String[]	getGroupName()
String	getMapName()
String	getMappingCountDescription(String pre)
InputStream	getOpenInputStream()
String	getOrganismLetters()
static String	getOrganismLettersFromMapId(String mapName)
String	getPathwayName()
URL	getPathwayURL()
URL	getPathwayURL(boolean useReferencePathwayURL)
String	getPathwayURLstring()
Vector2d	getTargetPosition()
boolean	isColorEnzymesAndUseReferencePathway()
boolean	isReferencePathway()
void	setColorEnzymesAndUseReferencePathway(boolean colorEnzymesAndUseReferencePathway)
void	setGroupName(String[] group)
void	setMapName(String mapName)
void	setMappingCount(String mappingCount)
void	setPathwayName(String pathwayName)
void	setTargetPosition(Vector2d targetPosition)
String	toString()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

KeggPathwayEntry

public KeggPathwayEntry(String name,
boolean stripOrganismName,
String mapName,
String[] group)

KeggPathwayEntry

public KeggPathwayEntry(InputStream inputStream)

KeggPathwayEntry

public KeggPathwayEntry(KeggPathwayEntry copyThisEntry,
boolean colorEnzymesAndUseReferencePathway)

Method Details

getGroupName

public String[] getGroupName()

setGroupName

public void setGroupName(String[] group)

getPathwayURLstring

public String getPathwayURLstring()

getPathwayURL

public URL getPathwayURL()

getPathwayURL

public URL getPathwayURL(boolean useReferencePathwayURL)

toString

public String toString()

Overrides:

toString in class Object

setMappingCount

public void setMappingCount(String mappingCount)

getOpenInputStream

public InputStream getOpenInputStream()
                               throws IOException

Throws:

IOException

getMappingCountDescription

public String getMappingCountDescription(String pre)

Parameters:

string -

Returns:

setPathwayName

public void setPathwayName(String pathwayName)

getPathwayName

public String getPathwayName()

setMapName

public void setMapName(String mapName)

getMapName

public String getMapName()

setColorEnzymesAndUseReferencePathway

public void setColorEnzymesAndUseReferencePathway(boolean colorEnzymesAndUseReferencePathway)

isColorEnzymesAndUseReferencePathway

public boolean isColorEnzymesAndUseReferencePathway()

isReferencePathway

public boolean isReferencePathway()

getOrganismLetters

public String getOrganismLetters()

getOrganismLettersFromMapId

public static String getOrganismLettersFromMapId(String mapName)

getTargetPosition

public Vector2d getTargetPosition()

setTargetPosition

public void setTargetPosition(Vector2d targetPosition)

compareTo

public int compareTo(Object o)

Specified by:

compareTo in interface Comparable<Object>