Package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility

Class UPathway

java.lang.Object

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.HelperClass

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UtilitySuperClassToGraph

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UPathway

public class UPathway
extends UtilitySuperClassToGraph

Constructor Summary

Constructors

Constructor	Description
UPathway()

Method Summary

Modifier and Type	Method	Description
static void	addAttributesToNode(GraphElement elem, org.biopax.paxtools.model.level3.Pathway i)	adds all information within the biopax class to the attribute set of the node
static void	readAttributesFromNode(GraphElement node, Graph g, org.biopax.paxtools.model.Model model)

Methods inherited from class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.HelperClass

returnAttributeByPath, returnAttributeByPath

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

UPathway

public UPathway()

Method Details

addAttributesToNode

public static void addAttributesToNode(GraphElement elem,
org.biopax.paxtools.model.level3.Pathway i)
                                throws IllegalArgumentException,
IllegalAccessException,
InvocationTargetException

adds all information within the biopax class to the attribute set of the node

Parameters:

elem -

i -

Throws:

IllegalArgumentException

IllegalAccessException

InvocationTargetException

readAttributesFromNode

public static void readAttributesFromNode(GraphElement node,
Graph g,
org.biopax.paxtools.model.Model model)
                                   throws IllegalArgumentException,
IllegalAccessException,
InvocationTargetException

Throws:

IllegalArgumentException

IllegalAccessException

InvocationTargetException