Uses of Class
org.graffiti.plugin.algorithm.AbstractAlgorithm

Packages that use AbstractAlgorithm

Package	Description
de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.circle_search
de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping
de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest
de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation
de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance	Provides the HammingDistancePlugin, a plugin for computing the hamming distances between graphs.
de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.inverse_graph
de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.lines_as_substances
de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder	Provides the NaivePatternFinderPlugin, a plugin for finding given patterns within a given graph.
de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview
de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths
de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som
de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.commands
de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image
de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe
de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms
de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.alt_id_statistics
de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go
de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram
de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.hierarchies
de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.kegg_reaction
de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.hierarchy
de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands
de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools
de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar
de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.launch_gui
de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe
de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color
de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.startlayout
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.connected_components
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.copy_pattern_layout
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_no_overlapp
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_reduce_space
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fd_edge_routing
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fish_eye
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.graph_to_origin_mover
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid	Provides the GridLayouterPlugin, a plugin for placing nodes on a grid.
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.no_overlapp_as_tim
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.radial_tree
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.random
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout	Provides the GridLayouterPlugin, a plugin for placing nodes on a grid.
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.springembedder_1
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.tree_simple
de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes
de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup
de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy
de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection
de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing
de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references
de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.ppt_exporter
de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.printer
de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids
de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.scripting
de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter
org.graffiti.plugin.algorithm
org.vanted.plugins.layout.adaptagrams.edgerouting
org.vanted.plugins.layout.stressminimization	A layout algorithm to Vanted that implements stress minimization.
vanted_feature

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.circle_search

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.circle_search

Modifier and Type	Class	Description
class	CircleSearchAndLayoutAlgorithm	Searches for circular sub-graphs and optionally applies a CircleLayouter.

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping

Modifier and Type	Class	Description
class	DataMapping

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest

Modifier and Type	Class	Description
class	ColorizeAlgorithm
class	DavidTestAlgorithm	Executes the David et.
class	GrubbsTestAlgorithm	Executes the Grubbs' statistical test to detect outliers.
class	ShowStatisticsTab

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation

Modifier and Type	Class	Description
class	BarabasiAlbertGraphGenerator	Needs implementation
class	ErdosRenyiGraphGenerator	Algorithm to generate an Erdos Renyi random network of n nodes, using p edge probability.
class	WattsStrogatzGraphGenerator	Algorithm for generation of a random small-world network.

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance

Modifier and Type	Class	Description
class	HammingDistanceAlgorithm	This algorithm computes the hamming distances between directed graphs.

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.inverse_graph

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.inverse_graph

Modifier and Type	Class	Description
class	InverseGraphPluginAlgorithm

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.lines_as_substances

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.lines_as_substances

Modifier and Type	Class	Description
class	LinesToSubstancesAlgorithm

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder

Modifier and Type	Class	Description
class	NaivePatternFinderAlgorithm	Finds pattern within a given target graph.

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview

Modifier and Type	Class	Description
class	ExchangeNodePositionsAlgorithm
class	RatioViewAlgorithm
class	SubstanceRatioCalculationAlgorithm

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths

Modifier and Type	Class	Description
class	AllPathsSelectionAlgorithm
class	ShortestPathSelectionAlgorithm
class	WeightedShortestPathSelectionAlgorithm

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som

Modifier and Type	Class	Description
class	MultiDataView
class	SOManalysis
class	SOMclusterAnalysis
class	SOMclusterAnalysisDoCluster
class	SOMprintDataset

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.commands

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.commands

Modifier and Type	Class	Description
class	TranspathPathwayLoader

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image

Modifier and Type	Class	Description
class	ImageAssignmentCommand	Algorithm to assign an image to a node.

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe

Modifier and Type	Class	Description
class	ApplyAlternativeIdentifiersTo
class	CombineMappingData
class	CreateFuncatGraphAlgorithm
class	MergeNodes	Merges nodes within the same network, while considering connecting edges and data mapping information.
class	ReplaceDiagramTitleFromAlternativeSubstanceNames
class	ShowOrHideImageAttributesAlgorithm
class	SplitNodeForSingleMappingData
class	UserMappingAlgorithm

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms

Modifier and Type	Class	Description
class	AddDiagramLegendAlgorithm
class	ColorScaleLegendAlgorithm
class	CreateDistanceMatrixAlgorithm
class	ExtractMappingDataAlgorithm
class	RecolorEdgesAlgorithm
class	RemoveMappingDataAlgorithm
class	SetNumericAttributeFromDataAlgorithm

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.alt_id_statistics

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.alt_id_statistics

Modifier and Type	Class	Description
class	AlternativeIDannotationStatistics

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go

Modifier and Type	Class	Description
class	CreateGOtreeAlgorithm
class	InterpreteGOtermsAlgorithm
class	InterpreteParentGOtermsAlgorithm

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram

Modifier and Type	Class	Description
class	ClusterHistogramFisherTest
class	CreateDirectChildrenClustersHistogramAlgorithm
class	CreateGOchildrenAverageDataDiagramAlgorithm
class	CreateGOchildrenClustersHistogramAlgorithm
class	CreateGOchildrenTtestHistogramAlgorithm
class	ProcessHierarchynodesDepOnLeafNodes
class	PruneTreeAlgorithm

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.hierarchies

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.hierarchies

Modifier and Type	Class	Description
class	CreateKEGGOrthologyGraphAlgorithm	This class replaces the CreateFuncatGraphAlgorithm, The first class created KEGG hierarchies based on direct given hierarchies (using alternative labels in the nodes), or

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.kegg_reaction

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.kegg_reaction

Modifier and Type	Class	Description
class	CreateKeggReactionNetworkAlgorithm

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.hierarchy

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.hierarchy

Modifier and Type	Class	Description
class	HierarchyAlgorithms	Deprecated.
class	HierarchyWizard

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands

Modifier and Type	Class	Description
class	SelectCompoundsAlgorithm
class	SelectEdgesAlgorithm
class	SelectEnzymesAlgorithm
class	SelectGenesAlgorithm
class	SelectMapNodesAlgorithm
class	SelectMapTitleNodesAlgorithm
class	SelectNodesWithExperimentalDataAlgorithm
class	SelectReactionsAlgorithm

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools

Modifier and Type	Class	Description
class	CloseAllWindows
class	EvaluateKGML
class	RecreateView

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar

Modifier and Type	Class	Description
class	ColorizeSuperGraphAlgorithm
class	CreateOrgSpecificSuperGraphsAlgorithm
class	MergeWindowsAlgorithm
class	SelectWindowsAlgorithm

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.launch_gui

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.launch_gui

Modifier and Type	Class	Description
class	LaunchGui

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe

Modifier and Type	Class	Description
class	AbstractExperimentDataProcessor	Management of action commands for data mapping.
class	PutIntoSidePanel

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color

Modifier and Type	Class	Description
class	SetBackgroundColorAlgorithm	DOCUMENT ME!
class	WindowSettings	DOCTODO: Include class header

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.startlayout

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.startlayout

Modifier and Type	Class	Description
class	StartLayoutAlgorithm

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph

Modifier and Type	Class	Description
class	ShowLayoutTab

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle

Modifier and Type	Class	Description
class	CircleLayouterAlgorithm	Places all nodes on a circle with a user specified radius.
class	CircleLayouterWithMinimumCrossingsAlgorithm	Places all nodes on a circle with a user specified radius.
class	CountCircularCrossingsAlgorithm
class	DotLayoutAlgorithm
class	NullLayoutAlgorithm

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.connected_components

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.connected_components

Modifier and Type	Class	Description
class	ConnectedComponentLayout

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.copy_pattern_layout

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.copy_pattern_layout

Modifier and Type	Class	Description
class	CopyPatternLayoutAlgorithm

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_no_overlapp

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_no_overlapp

Modifier and Type	Class	Description
class	NoOverlappLayoutAlgorithm	Epands the layout to remove any overlapping of nodes.

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_reduce_space

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_reduce_space

Modifier and Type	Class	Description
class	ExpandReduceLayouterAlgorithm	Transforms the layout by doing a calculation like x=x*1.4 and y=y*1.4 for the nodes and bends positions.

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fd_edge_routing

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fd_edge_routing

Modifier and Type	Class	Description
class	ForceDirectedEdgeLayout

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fish_eye

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fish_eye

Modifier and Type	Class	Description
class	FishEyeLayout	An implementation of a fish eye layout algorithm.

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.graph_to_origin_mover

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.graph_to_origin_mover

Modifier and Type	Class	Description
class	CenterLayouterAlgorithm	DOCTODO: Include class header
class	NoOverlappOfClustersAlgorithm

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid

Modifier and Type	Class	Description
class	GridLayouterAlgorithm	Gridlayouter algorithm: Performs a layout where every node is placed on a position of a grid.

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement

Modifier and Type	Class	Description
class	GridPlacementAlgorithm
class	IterateGridPlacementLayout

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.no_overlapp_as_tim

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.no_overlapp_as_tim

Modifier and Type	Class	Description
class	NoOverlappLayoutAlgorithmAS	Epands the layout to remove any overlapping of nodes.

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands

Modifier and Type	Class	Description
class	AddRandomClusterInformationAlgorithm
class	BendsLaunchGUI	Deprecated.
class	BringToFrontOrBackAlgorithm
class	BundleParallelEdges
class	ClusterGraphLayout
class	ClusterIndividualLayout
class	ClusterOverviewNetworkLaunchGui
class	CreateClusterGraphAlgorithm
class	CreateHierarchyTree	Deprecated.
class	DuplicateEdge
class	IntroduceBendsAlgorithm
class	IntroduceParallelEdgeBends
class	IntroduceSelfEdgeBends
class	PajekClusterColor
class	RemoveBendsAlgorithm
class	RemoveParallelEdges	The following algorithm deletes additional parallel edges, leaving only a single edge.
class	ResetEdgeSourceOrTarget
class	ResizeNodesDepDegreeAlgorithm
class	SelectClusterAlgorithm
class	SetClusterInfoAlgorithm
class	SetClusterInfoFromLabelAlgorithm
class	SetClusterInfoFromSubgraphAlgorithm
class	SetClusterLaunchGui
class	ShowClusterGraphAlgorithm
class	SortIntoCluster	Sorts graph elements into cluster.

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.radial_tree

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.radial_tree

Modifier and Type	Class	Description
class	RadialTreeLayout	An implementation of a radial tree layout algorithm.

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.random

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.random

Modifier and Type	Class	Description
class	RandomLayouterAlgorithm	This algorithm performs a random placement of the nodes on the visible area.

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout

Modifier and Type	Class	Description
class	ArrayLayout
class	GridLayoutAlgorithm	Resize+Gridlayout: Resizes all nodes and places them on a grid.
class	ResizeFromMappingCountLayoutAlgorithm

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree

Modifier and Type	Class	Description
class	MultiTreeLayout
class	RTTreeLayout	An implementation of a tree layout algorithm.

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.springembedder_1

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.springembedder_1

Modifier and Type	Class	Description
class	SpringEmbedderAlgorithm

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.tree_simple

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.tree_simple

Modifier and Type	Class	Description
class	GraphTreeLayout	An implementation of a tree layout algorithm.

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes

Modifier and Type	Class	Description
class	AddInterestingAttributes
class	CalculateAttribute
class	ComputeAttributesAlgorithm

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup

Modifier and Type	Class	Description
class	DeleteNodesAlgorithm	Labels all selected nodes with unique numbers.
class	NumberNodesAndEdgesAlgorithm	Labels all selected nodes with unique numbers.

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy

Modifier and Type	Class	Description
class	HideOrShowChildNodes
class	HierarchyAlgorithm
class	SelectLeafNodesAlgorithm

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection

Modifier and Type	Class	Description
class	ChangeEdgeStyle
class	ChangeElementStyle
class	ChangeNodeStyle
class	ClearSelection
class	CopyDataTableAlgorithm
class	ExpandSelectionAlgorithm	Labels all selected nodes with unique numbers.
class	ExportDataTableAlgorithm
class	FindReplaceDialog	Labels all selected nodes with unique numbers.
class	InvertSelectionAlgorithm	Labels all selected nodes with unique numbers.
class	RemoveSelectedNodesPreserveEdgesAlgorithm	Labels all selected nodes with unique numbers.
class	SearchAndSelecAlgorithm	Labels all selected nodes with unique numbers.
class	SetToolTipAlgorithm
class	SetURLAlgorithm

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing

Modifier and Type	Class	Description
class	ChangeLabelsAlgorithm	Deprecated.
class	EnrichHiddenLabelsAlgorithm
class	RemoveHiddenLabelsAlgorithm
class	RemoveParenthesisLabels
class	ReplaceLabelAlgorithm
class	RestoreLabelAlgorithm

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references

Modifier and Type	Class	Description
class	LinkSelection
class	PathwayReferenceAlgorithm
class	PathwayReferenceAutoCreationAlgorithm

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.ppt_exporter

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.ppt_exporter

Modifier and Type	Class	Description
class	PPTAlgorithm	Provides a PPT writer.

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.printer

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.printer

Modifier and Type	Class	Description
class	PrintAlgorithm	The print algorithm.

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids

Modifier and Type	Class	Description
class	AdditionalIdentifiersAlgorithm
class	ReplaceLabelFromAlternativeSubstanceNames

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.scripting

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.scripting

Modifier and Type	Class	Description
class	BeanShellDesktopAlgorithm	Provides a Bean Shell Desktop for the execution of Bean Shell Scripts.

Uses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter

Subclasses of AbstractAlgorithm in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter

Modifier and Type	Class	Description
class	GraphicExport
class	PDFAlgorithm	The print algorithm.
class	PDFSVGAlgorithm
class	PngJpegAlgorithm
class	SVGAlgorithm	The print algorithm.
class	WebsiteGeneration

Uses of AbstractAlgorithm in org.graffiti.plugin.algorithm

Subclasses of AbstractAlgorithm in org.graffiti.plugin.algorithm

Modifier and Type	Class	Description
class	AbstractAnimatedAlgorithm	Gives a standard implementation for the execute() method.
class	AbstractEditorAlgorithm
class	AbstractThreadSaveLayoutAlgorithm	Basis for Thread Safe (layout) Plugins and communication to the MainFrame

Uses of AbstractAlgorithm in org.vanted.plugins.layout.adaptagrams.edgerouting

Subclasses of AbstractAlgorithm in org.vanted.plugins.layout.adaptagrams.edgerouting

Modifier and Type	Class	Description
class	EdgeRoutingAlgorithm

Uses of AbstractAlgorithm in org.vanted.plugins.layout.stressminimization

Subclasses of AbstractAlgorithm in org.vanted.plugins.layout.stressminimization

Modifier and Type	Class	Description
class	BackgroundAlgorithm	Algorithm which runs in the background and able to notify other classes about state of the algorithm or the layout change of the graph.
class	StressMinimizationLayout	Layout algorithm performing a stress minimization layout process.

Uses of AbstractAlgorithm in vanted_feature

Subclasses of AbstractAlgorithm in vanted_feature

Modifier and Type	Class	Description
class	SelectAlgorithm	Deprecated.