Uses of Interface
org.graffiti.core.DeepCopy

Packages that use DeepCopy

Package	Description
de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors
de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings
de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors
de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image
de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_color
de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings
de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style
de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings
de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type
de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment
de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute
de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute
de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references
org.graffiti.attributes
org.graffiti.graph	Contains graph interfaces and classes.
org.graffiti.graphics
org.vanted.indexednodes	Provides graph data structures (and operations on them) that are more efficient for some purposes.
org.vanted.plugins.layout.multilevelframework	A layout algorithm to Vanted that implements the multi-level graph layout framework.

Uses of DeepCopy in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors that implement DeepCopy

Modifier and Type	Class	Description
class	ChartColorAttribute	All StringAttributes with the name id "chart_colors" will be converted into a ChartColorAttribute (see ChartAttributePlugin, where the mapping information from id to class type is initialized.

Uses of DeepCopy in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings that implement DeepCopy

Modifier and Type	Class	Description
class	ChartAttribute
class	ChartsColumnAttribute

Uses of DeepCopy in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors that implement DeepCopy

Modifier and Type	Class	Description
class	ClusterColorAttribute	All StringAttributes with the name id "chart_colors" will be converted into a ChartColorAttribute (see ChartAttributePlugin, where the mapping information from id to class type is initialized.

Uses of DeepCopy in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image that implement DeepCopy

Modifier and Type	Class	Description
class	CompoundAttribute
class	CompoundPositionAttribute

Uses of DeepCopy in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_color

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_color that implement DeepCopy

Modifier and Type	Class	Description
class	LabelColorAttribute

Uses of DeepCopy in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings that implement DeepCopy

Modifier and Type	Class	Description
class	LabelFontAttribute

Uses of DeepCopy in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style that implement DeepCopy

Modifier and Type	Class	Description
class	LabelStyleAttribute

Uses of DeepCopy in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings that implement DeepCopy

Modifier and Type	Class	Description
class	FontAttribute

Uses of DeepCopy in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type that implement DeepCopy

Modifier and Type	Class	Description
class	KeggGroupPartAttribute
class	KeggIdAttribute
class	KeggReactionIdAttribute
class	KeggReactionTypeAttribute
class	KeggRelationSrcTgtAttribute
class	KeggRelationSubTypeAttribute
class	KeggRelationTypeAttribute
class	KeggTypeAttribute

Uses of DeepCopy in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment that implement DeepCopy

Modifier and Type	Class	Description
class	LabelAlignmentAttribute

Uses of DeepCopy in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute that implement DeepCopy

Modifier and Type	Class	Description
class	URLAttribute

Uses of DeepCopy in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute that implement DeepCopy

Modifier and Type	Class	Description
class	XMLAttribute

Uses of DeepCopy in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references that implement DeepCopy

Modifier and Type	Class	Description
class	NodePathwayLinkVisualizationAttribute

Uses of DeepCopy in org.graffiti.attributes

Subinterfaces of DeepCopy in org.graffiti.attributes

Modifier and Type	Interface	Description
interface	Attribute	Interfaces an object, which contains an id and a value.
interface	CollectionAttribute	Contains a Collection of Attributes.
interface	SortedCollectionAttribute	Empty interface.

Classes in org.graffiti.attributes that implement DeepCopy

Modifier and Type	Class	Description
class	AbstractAttribute	Provides common functionality for classes implementing the Attribute interface.
class	AbstractCollectionAttribute	Provides common functionality for CollectionAttribute instances.
class	ArrowShapeAttribute
class	BooleanAttribute	Contains a boolean value.
class	ByteAttribute	Contains a byte
class	CompositeAttribute	Interfaces a composite attribute.
class	DoubleAttribute	Contains a double
class	EdgeShapeAttribute	"Tagging" class only.
class	FloatAttribute	Contains a float
class	HashMapAttribute	Maps a given id to an attribute.
class	IntegerAttribute	Contains an integer.
class	LinkedHashMapAttribute	DOCUMENT ME!
class	LongAttribute	Contains a long
class	NodeShapeAttribute	"Tagging" class only.
class	ObjectAttribute
class	ShortAttribute	Contains a short
class	StringAttribute	Contains a String.

Uses of DeepCopy in org.graffiti.graph

Subinterfaces of DeepCopy in org.graffiti.graph

Modifier and Type	Interface	Description
interface	Graph	A Graph consists of a set of nodes and a set of edges.

Classes in org.graffiti.graph that implement DeepCopy

Modifier and Type	Class	Description
class	AbstractGraph	Provides further functionality for graphs.
class	AdjListGraph	Implements the Graph -interface using an adjacency list representation of the graph.
class	OptAdjListGraph	Implements the Graph-interface using an adjacency list representation of the graph.

Uses of DeepCopy in org.graffiti.graphics

Classes in org.graffiti.graphics that implement DeepCopy

Modifier and Type	Class	Description
class	AWTImageAttribute	Contains the awt image graphic attribute.
class	ColorAttribute	Contains the color graphic attribute.
class	CoordinateAttribute	Contains the coordinate graphic attribute.
class	DimensionAttribute	Contains the graphic attribute dimension, that represents the minimal surrounding rectangle
class	DockingAttribute	Contains the graphic attribute docking for edges.
class	EdgeGraphicAttribute	Defines all graphic attributes of an edge
class	EdgeLabelAttribute	DOCUMENT ME!
class	EdgeLabelPositionAttribute	DOCUMENT ME!
class	GradientFillAttribute
class	GraphElementGraphicAttribute	Defines the common graphic attributes for nodes and edges
class	ImageAttribute	Contains the graphic attribute image.
class	LabelAttribute	Contains the graphic attribute label
class	LineModeAttribute	Attribute class for a dash-object, which encapsulates the information needed to specify stroke properties.
class	NodeGraphicAttribute	Defines all grahic attributes of a node
class	NodeLabelAttribute	DOCUMENT ME!
class	NodeLabelPositionAttribute	DOCUMENT ME!
class	PortAttribute	Contains information about the port of a node
class	PortsAttribute	Contains ingoing, outgoing and common ports
class	PositionAttribute	Contains properties of the attribute position for a label
class	ShapeDescriptionAttribute
class	SourceDockingAttribute
class	TargetDockingAttribute
class	ThicknessAttribute

Uses of DeepCopy in org.vanted.indexednodes

Classes in org.vanted.indexednodes that implement DeepCopy

Modifier and Type	Class	Description
class	IndexAttribute	Stores indices for nodes to allow fast index finding.

Uses of DeepCopy in org.vanted.plugins.layout.multilevelframework

Subinterfaces of DeepCopy in org.vanted.plugins.layout.multilevelframework

Modifier and Type	Interface	Description
interface	CoarsenedGraph	Adds a method to get the MergedNodes of a coarsening level to the Graph interface.