| de.ipk_gatersleben.ag_nw.graffiti |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.addons |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.circle_search |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.exact_fisher_test |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance |
Provides the HammingDistancePlugin, a plugin for computing the
hamming distances between graphs.
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.inverse_graph |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.lines_as_substances |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder |
Provides the NaivePatternFinderPlugin, a plugin for finding
given patterns within a given graph.
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.databases |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_organisms |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.commands |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_color |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_editing |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.pathway_kegg_operation |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.reaction_gui |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.relation_gui |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.alt_id_statistics |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.hierarchies |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.kegg_reaction |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.hierarchy |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.url_attribute_context_commands |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.enhanced_attribute_editors |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.helper |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_dbe |
Contains the Info Dialog for Database Editor and its helper.
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_example |
Contains the Info Dialog for IPK-Cluster Analysis. Example
Graffiti GUI component plug-in, which uses some deprecated artifacts.
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.launch_gui |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xlsx |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.genophen |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.special |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.startlayout |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.viewcomponents |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.zoomfit |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.biopax |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.metatool |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.pajek |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sif |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.xwg_wilma |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kegg_xml |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kgml |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.pajek |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.petri_ina_pnt |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.gui |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.ldap |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.connected_components |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.copy_pattern_layout |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_no_overlapp |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_reduce_space |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fd_edge_routing |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fish_eye |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.graph_to_origin_mover |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid |
Provides the GridLayouterPlugin, a plugin for placing nodes on
a grid.
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.no_overlapp_as_tim |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.radial_tree |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.random |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout |
Provides the GridLayouterPlugin, a plugin for placing nodes on
a grid.
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.springembedder_1 |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.tree_simple |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.link_visualization_legend |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.ppt_exporter |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.printer |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.scripting |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.threading |
|
| de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes |
|
| de.ipk_gatersleben.ag_nw.graffiti.services |
|
| de.ipk_gatersleben.ag_nw.graffiti.services.algorithms |
|
| de.ipk_gatersleben.ag_nw.graffiti.services.network |
|
| de.ipk_gatersleben.ag_nw.graffiti.services.task |
|
| de.ipk_gatersleben.ag_nw.graffiti.services.web |
|
| de.ipk_gatersleben.ag_pbi.datahandling |
|
| info.clearthought.layout |
|
| net.iharder.dnd |
|
| org |
|
| org.color |
|
| org.graffiti.attributes |
|
| org.graffiti.core |
|
| org.graffiti.editor |
Contains classes for the famous graffiti editor.
|
| org.graffiti.editor.actions |
Contains the editor's action classes.
|
| org.graffiti.editor.dialog |
|
| org.graffiti.editor.options |
Contains option panes for the editor's option dialog.
|
| org.graffiti.event |
Contains event classes and listener interfaces that are used to react to
events fired by the graph model.
|
| org.graffiti.graph |
Contains graph interfaces and classes.
|
| org.graffiti.graphics |
|
| org.graffiti.help |
|
| org.graffiti.managers |
|
| org.graffiti.managers.pluginmgr |
Contains classes for the plugin manager.
|
| org.graffiti.options |
Contains the option pane functionality.
|
| org.graffiti.plugin |
Contains an interface and an adapter class for a generic plugin.
|
| org.graffiti.plugin.actions |
|
| org.graffiti.plugin.algorithm |
|
| org.graffiti.plugin.attributecomponent |
|
| org.graffiti.plugin.editcomponent |
|
| org.graffiti.plugin.extension |
|
| org.graffiti.plugin.gui |
|
| org.graffiti.plugin.inspector |
|
| org.graffiti.plugin.io |
Contains interfaces and classes for reading and writing a graph object
in diverse file formats.
|
| org.graffiti.plugin.io.resources |
|
| org.graffiti.plugin.mode |
|
| org.graffiti.plugin.parameter |
|
| org.graffiti.plugin.tool |
|
| org.graffiti.plugin.view |
|
| org.graffiti.plugins.attributecomponents.simplelabel |
|
| org.graffiti.plugins.attributes.defaults |
|
| org.graffiti.plugins.editcomponents.defaults |
|
| org.graffiti.plugins.guis.switchselections |
|
| org.graffiti.plugins.inspectors.defaults |
|
| org.graffiti.plugins.ios.exporters.gml |
|
| org.graffiti.plugins.ios.exporters.gmlxml |
|
| org.graffiti.plugins.ios.exporters.graphml |
This package provides a plugin for writing Graphs to
files using the graphML format. |
| org.graffiti.plugins.ios.exporters.graphviz |
|
| org.graffiti.plugins.ios.importers |
|
| org.graffiti.plugins.ios.importers.gml |
|
| org.graffiti.plugins.ios.importers.graphml |
This package provides the interface to a plugin for reading
Graphs from files using the graphML
format. |
| org.graffiti.plugins.ios.importers.graphml.parser |
This package provides the parsing facilities for reading in files
in the graphML format. |
| org.graffiti.plugins.modes.defaultEditMode |
|
| org.graffiti.plugins.modes.defaults |
|
| org.graffiti.plugins.tools.enhancedzoomtool |
|
| org.graffiti.plugins.tools.zoomtool |
|
| org.graffiti.plugins.views.defaults |
|
| org.graffiti.plugins.views.matrix |
|
| org.graffiti.selection |
Contains classes for the selection model.
|
| org.graffiti.session |
Contains classes, which are needed for the session handling.
|
| org.graffiti.undo |
|
| org.graffiti.util |
Contains utility classes for frequently needed functionality.
|
| org.graffiti.util.logging |
Contains classes, which make use of JavaTM 2 platform's core logging
facilities.
|
| org.jfree.chart |
|
| org.jfree.chart.annotations |
A framework for addings annotations to charts.
|
| org.jfree.chart.axis |
Axis classes and interfaces.
|
| org.jfree.chart.demo |
|
| org.jfree.chart.demo.resources |
Resource bundles for the JFreeChart demonstration applications.
|
| org.jfree.chart.entity |
Classes representing components of (or entities in) a chart.
|
| org.jfree.chart.event |
Event classes and listener interfaces, used to provide a change
notification mechanism so that charts are automatically redrawn
whenever changes are made to any chart component.
|
| org.jfree.chart.imagemap |
Classes for image maps.
|
| org.jfree.chart.labels |
Generators and other classes used for the display of item labels and tooltips.
|
| org.jfree.chart.needle |
A range of objects that can be used to represent the needle on a
CompassPlot. |
| org.jfree.chart.plot |
Plot classes and related interfaces.
|
| org.jfree.chart.renderer |
|
| org.jfree.chart.resources |
Localised resources for the JFreeChart class library.
|
| org.jfree.chart.title |
Classes used to display chart titles and subtitles.
|
| org.jfree.chart.ui |
An optional package containing user interface components for editing chart properties (used in the JFreeChart demo application);
|
| org.jfree.chart.urls |
Classes for adding URLS to charts for HTML image map generation.
|
| org.jfree.data |
Data interfaces and classes.
|
| org.jfree.data.gantt |
Data interfaces and classes for Gantt charts.
|
| org.jfree.data.resources |
Resource bundles for items that require localisation.
|
| org.jfree.data.statistics |
Classes for representing statistical data.
|
| org.jfree.data.time |
Interfaces and classes for time-related data.
|
| org.jfree.data.xml |
Support for reading datasets from XML files.
|
| org.vanted |
Overarching classes, such as preferences and build information.
|
| org.vanted.animation |
|
| org.vanted.animation.animations |
|
| org.vanted.animation.data |
|
| org.vanted.animation.interpolators |
|
| org.vanted.animation.loopers |
|
| org.vanted.indexednodes |
Provides graph data structures (and operations on them) that are more efficient for some purposes.
|
| org.vanted.indexednodes.accumulators |
|
| org.vanted.osx |
Mac OS X support classes.
|
| org.vanted.plugins.layout.adaptagrams |
|
| org.vanted.plugins.layout.adaptagrams.edgerouting |
|
| org.vanted.plugins.layout.multilevelframework |
A layout algorithm to Vanted that implements the multi-level graph layout framework.
|
| org.vanted.plugins.layout.stressminimization |
A layout algorithm to Vanted that implements stress minimization.
|
| org.vanted.plugins.layout.stressminimization.parameters |
|
| org.vanted.scaling |
High DPI (4K and above) Swing Support: GUI, helpers, controllers (loader,
regulator, coordinator, etc.).
|
| org.vanted.scaling.resources |
High DPI (4K and above) Swing Support: scaling-relevant resources.
|
| org.vanted.scaling.scalers |
High DPI (4K and above) Swing Support: Look and Feel specific scalers.
|
| org.vanted.scaling.scalers.component |
High DPI (4K and above) Swing Support: GUI Components scalers.
|
| org.vanted.scaling.vanted |
High DPI (4K and above) Swing Support: Classes responsible for Vanted
components scaling and feature integration.
|
| org.vanted.updater |
Updates-providing classes and helpers.
|
| placement |
|
| qmwi.kseg.som |
|
| qmwi.kseg.som.diagram |
|
| scenario |
|
| unit_test_support |
|
| vanted_feature |
|