Hierarchy For All Packages

Package Hierarchies:

• de.ipk_gatersleben.ag_nw.graffiti,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.addons,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.circle_search,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.exact_fisher_test,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.inverse_graph,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.lines_as_substances,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.databases,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_organisms,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.commands,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_color,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_editing,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.pathway_kegg_operation,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.reaction_gui,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.relation_gui,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.alt_id_statistics,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.hierarchies,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.kegg_reaction,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.hierarchy,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.url_attribute_context_commands,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.enhanced_attribute_editors,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.helper,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_dbe,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_example,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.launch_gui,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xlsx,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.genophen,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.special,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.startlayout,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.viewcomponents,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.zoomfit,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.biopax,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.metatool,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.pajek,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sif,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.xwg_wilma,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kegg_xml,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kgml,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.pajek,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.petri_ina_pnt,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.gui,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.ldap,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.connected_components,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.copy_pattern_layout,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_no_overlapp,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_reduce_space,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fd_edge_routing,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fish_eye,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.graph_to_origin_mover,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.no_overlapp_as_tim,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.radial_tree,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.random,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.springembedder_1,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.tree_simple,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.link_visualization_legend,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.ppt_exporter,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.printer,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.scripting,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.threading,
• de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes,
• de.ipk_gatersleben.ag_nw.graffiti.services,
• de.ipk_gatersleben.ag_nw.graffiti.services.algorithms,
• de.ipk_gatersleben.ag_nw.graffiti.services.network,
• de.ipk_gatersleben.ag_nw.graffiti.services.task,
• de.ipk_gatersleben.ag_nw.graffiti.services.web,
• de.ipk_gatersleben.ag_pbi.datahandling,
• info.clearthought.layout,
• net.iharder.dnd,
• org,
• org.color,
• org.graffiti.attributes,
• org.graffiti.core,
• org.graffiti.editor,
• org.graffiti.editor.actions,
• org.graffiti.editor.dialog,
• org.graffiti.editor.options,
• org.graffiti.event,
• org.graffiti.graph,
• org.graffiti.graphics,
• org.graffiti.help,
• org.graffiti.managers,
• org.graffiti.managers.pluginmgr,
• org.graffiti.options,
• org.graffiti.plugin,
• org.graffiti.plugin.actions,
• org.graffiti.plugin.algorithm,
• org.graffiti.plugin.attributecomponent,
• org.graffiti.plugin.editcomponent,
• org.graffiti.plugin.extension,
• org.graffiti.plugin.gui,
• org.graffiti.plugin.inspector,
• org.graffiti.plugin.io,
• org.graffiti.plugin.io.resources,
• org.graffiti.plugin.mode,
• org.graffiti.plugin.parameter,
• org.graffiti.plugin.tool,
• org.graffiti.plugin.view,
• org.graffiti.plugins.attributecomponents.simplelabel,
• org.graffiti.plugins.attributes.defaults,
• org.graffiti.plugins.editcomponents.defaults,
• org.graffiti.plugins.guis.switchselections,
• org.graffiti.plugins.inspectors.defaults,
• org.graffiti.plugins.ios.exporters.gml,
• org.graffiti.plugins.ios.exporters.gmlxml,
• org.graffiti.plugins.ios.exporters.graphml,
• org.graffiti.plugins.ios.exporters.graphviz,
• org.graffiti.plugins.ios.importers,
• org.graffiti.plugins.ios.importers.gml,
• org.graffiti.plugins.ios.importers.graphml,
• org.graffiti.plugins.ios.importers.graphml.parser,
• org.graffiti.plugins.modes.defaultEditMode,
• org.graffiti.plugins.modes.defaults,
• org.graffiti.plugins.tools.enhancedzoomtool,
• org.graffiti.plugins.tools.zoomtool,
• org.graffiti.plugins.views.defaults,
• org.graffiti.plugins.views.matrix,
• org.graffiti.selection,
• org.graffiti.session,
• org.graffiti.undo,
• org.graffiti.util,
• org.graffiti.util.logging,
• org.jfree.chart,
• org.jfree.chart.annotations,
• org.jfree.chart.axis,
• org.jfree.chart.demo,
• org.jfree.chart.demo.resources,
• org.jfree.chart.entity,
• org.jfree.chart.event,
• org.jfree.chart.imagemap,
• org.jfree.chart.labels,
• org.jfree.chart.needle,
• org.jfree.chart.plot,
• org.jfree.chart.renderer,
• org.jfree.chart.resources,
• org.jfree.chart.title,
• org.jfree.chart.ui,
• org.jfree.chart.urls,
• org.jfree.data,
• org.jfree.data.gantt,
• org.jfree.data.resources,
• org.jfree.data.statistics,
• org.jfree.data.time,
• org.jfree.data.xml,
• org.vanted,
• org.vanted.animation,
• org.vanted.animation.animations,
• org.vanted.animation.data,
• org.vanted.animation.interpolators,
• org.vanted.animation.loopers,
• org.vanted.indexednodes,
• org.vanted.indexednodes.accumulators,
• org.vanted.osx,
• org.vanted.plugins.layout.adaptagrams,
• org.vanted.plugins.layout.adaptagrams.edgerouting,
• org.vanted.plugins.layout.multilevelframework,
• org.vanted.plugins.layout.stressminimization,
• org.vanted.plugins.layout.stressminimization.parameters,
• org.vanted.scaling,
• org.vanted.scaling.resources,
• org.vanted.scaling.scalers,
• org.vanted.scaling.scalers.component,
• org.vanted.scaling.vanted,
• org.vanted.updater,
• placement,
• qmwi.kseg.som,
• qmwi.kseg.som.diagram,
• scenario,
• unit_test_support,
• vanted_feature

Class Hierarchy

• java.lang.Object
  • javax.swing.AbstractAction (implements javax.swing.Action, java.lang.Cloneable, java.io.Serializable)
    • org.graffiti.plugin.actions.GraffitiAction
      • org.graffiti.editor.actions.CloneViewAction
      • org.graffiti.editor.actions.CloseViewAction
      • org.graffiti.editor.actions.EditRedoAction
      • org.graffiti.editor.actions.EditUndoAction
      • org.graffiti.editor.actions.ExitAction
      • org.graffiti.editor.actions.FileCloseAction
      • org.graffiti.editor.actions.FileNewAction
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.FileOpenAction
      • org.graffiti.editor.actions.FileOpenAction
      • org.graffiti.editor.actions.FileSaveAction
      • org.graffiti.editor.actions.FileSaveAllAction
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.FileSaveAsAction
      • org.graffiti.editor.actions.FileSaveAsAction
      • org.graffiti.editor.actions.PluginManagerEditAction
      • org.graffiti.editor.actions.RedrawViewAction
      • org.graffiti.editor.actions.RunAlgorithm
      • org.graffiti.plugin.actions.SelectionAction
        • org.graffiti.editor.actions.AddAttributeAction
        • org.graffiti.editor.actions.ChangeAttributeValueAction
        • org.graffiti.editor.actions.CopyAction
        • org.graffiti.editor.actions.CutAction
        • org.graffiti.editor.actions.DeleteAction
        • org.graffiti.editor.actions.DeleteAttributeAction
        • org.graffiti.editor.actions.PasteAction
        • org.graffiti.plugin.actions.PopupAction
        • org.graffiti.editor.actions.SelectAllAction
      • org.graffiti.plugins.guis.switchselections.SelectionChangeAction
      • org.graffiti.plugins.guis.switchselections.SelectionSaveAction
      • org.graffiti.editor.actions.ShowPreferencesAction
      • org.graffiti.editor.actions.ViewNewAction
    • org.vanted.osx.OpenFileAction
  • org.graffiti.plugin.algorithm.AbstractAlgorithm (implements org.graffiti.plugin.algorithm.Algorithm, javax.swing.undo.UndoableEdit)
    • org.graffiti.plugin.algorithm.AbstractAnimatedAlgorithm (implements org.graffiti.plugin.algorithm.AnimatedAlgorithm)
    • org.graffiti.plugin.algorithm.AbstractEditorAlgorithm (implements org.graffiti.plugin.algorithm.EditorAlgorithm)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.AbstractExperimentDataProcessor (implements de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataProcessor)
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping.DataMapping
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.PutIntoSidePanel
      • org.vanted.plugins.layout.stressminimization.BackgroundAlgorithm
        • org.vanted.plugins.layout.stressminimization.StressMinimizationLayout
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ChangeEdgeStyle
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ChangeElementStyle
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ChangeNodeStyle
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.CloseAllWindows
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.DuplicateEdge
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ExportDataTableAlgorithm
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.launch_gui.LaunchGui (implements org.graffiti.plugin.algorithm.ProvidesAccessToOtherAlgorithms, scenario.ScenarioServiceIgnoreAlgorithm)
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.ApplyAlternativeIdentifiersTo
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BendsLaunchGUI
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.ChangeLabelsAlgorithm
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ClusterOverviewNetworkLaunchGui
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.ComputeAttributesAlgorithm
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.CreateHierarchyTree
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.GraphicExport
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.hierarchy.HierarchyAlgorithms
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.LinkSelection (implements org.graffiti.plugin.algorithm.Algorithm)
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.ProcessHierarchynodesDepOnLeafNodes
        • vanted_feature.SelectAlgorithm
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SetClusterLaunchGui
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOManalysis (implements org.graffiti.plugin.algorithm.Algorithm)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.RecreateView
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.RemoveParallelEdges
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ResetEdgeSourceOrTarget
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchAndSelecAlgorithm (implements scenario.ScenarioServiceHandlesStoredParametersOption)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SelectClusterAlgorithm
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color.SetBackgroundColorAlgorithm (implements java.awt.event.ActionListener, de.ipk_gatersleben.ag_nw.graffiti.NeedsSwingThread, org.graffiti.plugin.algorithm.ProvidesGeneralContextMenu)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph.ShowLayoutTab
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.WebsiteGeneration (implements de.ipk_gatersleben.ag_nw.graffiti.NeedsSwingThread)
    • org.graffiti.plugin.algorithm.AbstractThreadSaveLayoutAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.AddDiagramLegendAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.AddInterestingAttributes
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.AdditionalIdentifiersAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.AddRandomClusterInformationAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.AllPathsSelectionAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.alt_id_statistics.AlternativeIDannotationStatistics
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.ArrayLayout
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.BarabasiAlbertGraphGenerator
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.scripting.BeanShellDesktopAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BringToFrontOrBackAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BundleParallelEdges
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.CalculateAttribute
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.graph_to_origin_mover.CenterLayouterAlgorithm (implements java.awt.event.ActionListener, org.graffiti.plugin.algorithm.ProvidesGeneralContextMenu)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.CircleLayouterAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.CircleLayouterWithMinimumCrossingsAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.circle_search.CircleSearchAndLayoutAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ClearSelection
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ClusterGraphLayout (implements org.graffiti.plugin.algorithm.AlgorithmWithComponentDescription)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.ClusterHistogramFisherTest (implements org.graffiti.plugin.algorithm.AlgorithmWithComponentDescription)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ClusterIndividualLayout
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.ColorizeAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.ColorizeSuperGraphAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.ColorScaleLegendAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.CombineMappingData
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.connected_components.ConnectedComponentLayout
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.CopyDataTableAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.copy_pattern_layout.CopyPatternLayoutAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.CountCircularCrossingsAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.CreateClusterGraphAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateDirectChildrenClustersHistogramAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.CreateDistanceMatrixAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.CreateFuncatGraphAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateGOchildrenAverageDataDiagramAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateGOchildrenClustersHistogramAlgorithm (implements org.graffiti.plugin.algorithm.AlgorithmWithComponentDescription)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateGOchildrenTtestHistogramAlgorithm (implements org.graffiti.plugin.algorithm.AlgorithmWithComponentDescription)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.CreateGOtreeAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.hierarchies.CreateKEGGOrthologyGraphAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.kegg_reaction.CreateKeggReactionNetworkAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.CreateOrgSpecificSuperGraphsAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.DavidTestAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup.DeleteNodesAlgorithm (implements java.awt.event.ActionListener, org.graffiti.plugin.algorithm.ProvidesEdgeContextMenu, org.graffiti.plugin.algorithm.ProvidesGeneralContextMenu)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.DotLayoutAlgorithm
    • org.vanted.plugins.layout.adaptagrams.edgerouting.EdgeRoutingAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.EnrichHiddenLabelsAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.ErdosRenyiGraphGenerator
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.EvaluateKGML
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.ExchangeNodePositionsAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_reduce_space.ExpandReduceLayouterAlgorithm (implements de.ipk_gatersleben.ag_nw.graffiti.NeedsSwingThread, org.graffiti.plugin.algorithm.ProvidesNodeContextMenu)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ExpandSelectionAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.ExtractMappingDataAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.FindReplaceDialog
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fish_eye.FishEyeLayout
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fd_edge_routing.ForceDirectedEdgeLayout
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.tree_simple.GraphTreeLayout
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.GridLayoutAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid.GridLayouterAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement.GridPlacementAlgorithm (implements java.awt.event.ActionListener, org.graffiti.plugin.algorithm.ProvidesNodeContextMenu)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.GrubbsTestAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.HammingDistanceAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.HideOrShowChildNodes (implements org.graffiti.plugin.algorithm.ProvidesNodeContextMenu)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.HierarchyAlgorithm (implements java.awt.event.ActionListener, org.graffiti.plugin.algorithm.ProvidesNodeContextMenu)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.hierarchy.HierarchyWizard
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.ImageAssignmentCommand
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.InterpreteGOtermsAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.InterpreteParentGOtermsAlgorithm (implements org.graffiti.plugin.algorithm.ProvidesNodeContextMenu)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.IntroduceBendsAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.IntroduceParallelEdgeBends
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.IntroduceSelfEdgeBends
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.inverse_graph.InverseGraphPluginAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.InvertSelectionAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement.IterateGridPlacementLayout (implements org.graffiti.plugin.algorithm.Algorithm)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.lines_as_substances.LinesToSubstancesAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.MergeNodes
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.MergeWindowsAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.MultiDataView
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.MultiTreeLayout
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.NaivePatternFinderAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_no_overlapp.NoOverlappLayoutAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.no_overlapp_as_tim.NoOverlappLayoutAlgorithmAS
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.graph_to_origin_mover.NoOverlappOfClustersAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.NullLayoutAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup.NumberNodesAndEdgesAlgorithm (implements org.graffiti.plugin.algorithm.ProvidesEdgeContextMenu, org.graffiti.plugin.algorithm.ProvidesNodeContextMenu)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.PajekClusterColor
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayReferenceAlgorithm (implements org.graffiti.plugin.algorithm.Algorithm)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayReferenceAutoCreationAlgorithm (implements org.graffiti.plugin.algorithm.Algorithm)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PDFAlgorithm (implements org.BackgroundTaskStatusProvider, de.ipk_gatersleben.ag_nw.graffiti.NeedsSwingThread)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PDFSVGAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithm (implements de.ipk_gatersleben.ag_nw.graffiti.NeedsSwingThread)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.ppt_exporter.PPTAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.printer.PrintAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.PruneTreeAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.radial_tree.RadialTreeLayout
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.random.RandomLayouterAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.RatioViewAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.RecolorEdgesAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.RemoveBendsAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.RemoveHiddenLabelsAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.RemoveMappingDataAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.RemoveParenthesisLabels
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.RemoveSelectedNodesPreserveEdgesAlgorithm (implements org.graffiti.plugin.algorithm.AlgorithmWithComponentDescription)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.ReplaceDiagramTitleFromAlternativeSubstanceNames
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.ReplaceLabelAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.ReplaceLabelFromAlternativeSubstanceNames
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.ResizeFromMappingCountLayoutAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ResizeNodesDepDegreeAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.RestoreLabelAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.RTTreeLayout
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectCompoundsAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectEdgesAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectEnzymesAlgorithm (implements org.graffiti.plugin.algorithm.Algorithm)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectGenesAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.SelectLeafNodesAlgorithm (implements java.awt.event.ActionListener, org.graffiti.plugin.algorithm.ProvidesNodeContextMenu)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectMapNodesAlgorithm (implements org.graffiti.plugin.algorithm.Algorithm)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectMapTitleNodesAlgorithm (implements org.graffiti.plugin.algorithm.Algorithm)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectNodesWithExperimentalDataAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectReactionsAlgorithm (implements org.graffiti.plugin.algorithm.Algorithm)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.SelectWindowsAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SetClusterInfoAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SetClusterInfoFromLabelAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SetClusterInfoFromSubgraphAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.SetNumericAttributeFromDataAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SetToolTipAlgorithm (implements org.graffiti.plugin.algorithm.Algorithm)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SetURLAlgorithm (implements org.graffiti.plugin.algorithm.Algorithm)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.ShortestPathSelectionAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ShowClusterGraphAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.ShowOrHideImageAttributesAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.ShowStatisticsTab (implements org.graffiti.plugin.algorithm.Algorithm)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMclusterAnalysis
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMclusterAnalysisDoCluster
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMprintDataset
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SortIntoCluster
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.SplitNodeForSingleMappingData
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.springembedder_1.SpringEmbedderAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.startlayout.StartLayoutAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.SubstanceRatioCalculationAlgorithm (implements org.graffiti.plugin.algorithm.AlgorithmWithComponentDescription)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SVGAlgorithm (implements de.ipk_gatersleben.ag_nw.graffiti.NeedsSwingThread)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.commands.TranspathPathwayLoader
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.UserMappingAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.WattsStrogatzGraphGenerator
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.WeightedShortestPathSelectionAlgorithm
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color.WindowSettings (implements java.awt.event.ActionListener, org.graffiti.plugin.algorithm.ProvidesGeneralContextMenu)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.AbstractAnnotationProvider (implements de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.AnnotationProvider)
  • org.graffiti.plugins.views.defaults.AbstractArrowShape (implements org.graffiti.plugin.view.ArrowShape)
    • org.graffiti.plugins.views.defaults.AbsoluteInhibitorArrowShape
    • org.graffiti.plugins.views.defaults.AbsoluteStimulationArrowShape (implements org.graffiti.plugins.views.defaults.SupportsHollowDrawing)
    • org.graffiti.plugins.views.defaults.AssignmentArrowShape (implements org.graffiti.plugins.views.defaults.SupportsHollowDrawing)
    • org.graffiti.plugins.views.defaults.CircleArrowShape (implements org.graffiti.plugins.views.defaults.SupportsHollowDrawing)
    • org.graffiti.plugins.views.defaults.CircleConnectArrowShape
    • org.graffiti.plugins.views.defaults.DiamondArrowShape (implements org.graffiti.plugins.views.defaults.SupportsHollowDrawing)
    • org.graffiti.plugins.views.defaults.InhibitorArrowShape
    • org.graffiti.plugins.views.defaults.RectangularNodeShape (implements org.graffiti.plugin.view.NodeShape)
      • org.graffiti.plugins.views.defaults.CircularNodeShape
        • org.graffiti.plugins.views.defaults.CircleNodeShape
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNCircleShape (implements org.graffiti.plugin.view.ProvidesAdditonalDrawingShapes)
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNDissociationShape
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SourceSinkShape (implements org.graffiti.plugin.view.ProvidesAdditonalDrawingShapes)
        • org.graffiti.plugins.views.defaults.EllipseNodeShape
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.DoubleEllipseShape (implements org.graffiti.plugin.view.ProvidesAdditonalDrawingShapes)
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.MultiEllipseShape (implements org.graffiti.plugin.view.ProvidesAdditonalDrawingShapes)
      • org.graffiti.plugins.views.defaults.PolygonalNodeShape
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.RelativePolyShape
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.ComplexShape
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.DiamondShape
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.LeftSkewedRectShape
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.MultiComplexShape (implements org.graffiti.plugin.view.ProvidesAdditonalDrawingShapes)
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.MultiNucleicAcidFeatureShape (implements org.graffiti.plugin.view.ProvidesAdditonalDrawingShapes)
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.NucleicAcidFeatureShape
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.ObservableShape
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.PaperShape
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.PaperShapeBottomLeft
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.PaperShapeBottomRight
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.PaperShapeLeftBottom
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.PaperShapeLeftTop
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.PaperShapeRightBottom
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.PaperShapeRightTop
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.PaperShapeTopLeft
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.PaperShapeTopRight
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.PertubationShape
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.ReceptorDownShape
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.ReceptorLeftShape
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.ReceptorRightShape
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.ReceptorUpShape
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.RightSkewedRectShape
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TagDownShape
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TagLeftShape
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TagRightShape
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TagUpShape
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TruncProteinShape
      • org.graffiti.plugins.views.defaults.RectangleNodeShape
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.MultiRectangleShape (implements org.graffiti.plugin.view.ProvidesAdditonalDrawingShapes)
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNMultiStadiumShape (implements org.graffiti.plugin.view.ProvidesAdditonalDrawingShapes)
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNProcessShape (implements org.graffiti.plugin.view.ProvidesAdditonalDrawingShapes)
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNStadiumShape
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TransitionShape (implements org.graffiti.plugin.view.ProvidesAdditonalDrawingShapes)
    • org.graffiti.plugins.views.defaults.StandardArrowShape (implements org.graffiti.plugins.views.defaults.SupportsHollowDrawing)
    • org.graffiti.plugins.views.defaults.StandardArrowShapeLeft (implements org.graffiti.plugins.views.defaults.SupportsHollowDrawing)
    • org.graffiti.plugins.views.defaults.StandardArrowShapeRight (implements org.graffiti.plugins.views.defaults.SupportsHollowDrawing)
    • org.graffiti.plugins.views.defaults.TriggerArrowShape (implements org.graffiti.plugins.views.defaults.SupportsHollowDrawing)
  • org.graffiti.attributes.AbstractAttributable (implements org.graffiti.attributes.Attributable)
    • org.graffiti.graph.AbstractGraph (implements org.graffiti.graph.Graph)
      • org.graffiti.graph.AdjListGraph (implements org.graffiti.graph.Graph)
        • org.graffiti.graph.OptAdjListGraph (implements org.graffiti.graph.Graph)
    • org.graffiti.graph.AbstractGraphElement (implements org.graffiti.graph.GraphElement)
      • org.graffiti.graph.AbstractEdge (implements org.graffiti.graph.Edge)
        • org.graffiti.graph.AdjListEdge (implements org.graffiti.graph.Edge, org.graffiti.graph.GraphElement)
      • org.graffiti.graph.AbstractNode (implements org.graffiti.graph.Node)
        • org.graffiti.graph.AdjListNode (implements org.graffiti.graph.GraphElement, org.graffiti.graph.Node)
          • org.vanted.plugins.layout.multilevelframework.MergedNode
  • org.graffiti.attributes.AbstractAttribute (implements org.graffiti.attributes.Attribute)
    • org.graffiti.attributes.AbstractCollectionAttribute (implements org.graffiti.attributes.CollectionAttribute)
      • org.graffiti.attributes.HashMapAttribute (implements org.graffiti.attributes.CollectionAttribute, java.lang.Comparable<T>)
        • org.graffiti.graphics.ColorAttribute (implements org.graffiti.attributes.ColorSetAndGetSupport, org.graffiti.graphics.GraphicAttributeConstants)
        • org.graffiti.graphics.CoordinateAttribute (implements org.graffiti.graphics.GraphicAttributeConstants)
        • org.graffiti.graphics.DimensionAttribute (implements org.graffiti.graphics.GraphicAttributeConstants)
        • org.graffiti.graphics.DockingAttribute (implements org.graffiti.graphics.GraphicAttributeConstants)
        • org.graffiti.graphics.GraphElementGraphicAttribute (implements org.graffiti.graphics.GraphicAttributeConstants)
          • org.graffiti.graphics.EdgeGraphicAttribute
          • org.graffiti.graphics.NodeGraphicAttribute
        • org.graffiti.graphics.ImageAttribute (implements org.graffiti.graphics.GraphicAttributeConstants)
        • org.graffiti.graphics.LabelAttribute (implements org.graffiti.graphics.GraphicAttributeConstants)
          • org.graffiti.graphics.EdgeLabelAttribute
          • org.graffiti.graphics.NodeLabelAttribute
        • org.graffiti.graphics.PortAttribute (implements org.graffiti.graphics.GraphicAttributeConstants)
        • org.graffiti.graphics.PortsAttribute (implements org.graffiti.graphics.GraphicAttributeConstants)
        • org.graffiti.graphics.PositionAttribute (implements org.graffiti.graphics.GraphicAttributeConstants)
          • org.graffiti.graphics.EdgeLabelPositionAttribute
          • org.graffiti.graphics.NodeLabelPositionAttribute
      • org.graffiti.attributes.LinkedHashMapAttribute (implements org.graffiti.attributes.SortedCollectionAttribute)
        • org.graffiti.graphics.ShapeDescriptionAttribute
    • org.graffiti.attributes.BooleanAttribute
    • org.graffiti.attributes.ByteAttribute
    • org.graffiti.attributes.CompositeAttribute
      • org.graffiti.graphics.AWTImageAttribute
      • org.graffiti.graphics.LineModeAttribute
    • org.graffiti.attributes.DoubleAttribute
      • org.graffiti.graphics.GradientFillAttribute
      • org.graffiti.graphics.ThicknessAttribute
    • org.graffiti.attributes.FloatAttribute
    • org.vanted.indexednodes.IndexAttribute
    • org.graffiti.attributes.IntegerAttribute
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartsColumnAttribute
    • org.graffiti.attributes.LongAttribute
    • org.graffiti.attributes.ShortAttribute
    • org.graffiti.attributes.StringAttribute
      • org.graffiti.attributes.ArrowShapeAttribute
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartAttribute
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttribute
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttribute
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundAttribute
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundPositionAttribute
      • org.graffiti.attributes.EdgeShapeAttribute
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttribute
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggGroupPartAttribute
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggIdAttribute
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionIdAttribute
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionTypeAttribute
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSrcTgtAttribute
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSubTypeAttribute
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationTypeAttribute
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggTypeAttribute
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment.LabelAlignmentAttribute
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_color.LabelColorAttribute (implements org.graffiti.attributes.ColorSetAndGetSupport)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings.LabelFontAttribute
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style.LabelStyleAttribute
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.NodePathwayLinkVisualizationAttribute
      • org.graffiti.attributes.NodeShapeAttribute
      • org.graffiti.attributes.ObjectAttribute
      • org.graffiti.graphics.SourceDockingAttribute
      • org.graffiti.graphics.TargetDockingAttribute
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttribute
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttribute
  • org.graffiti.event.AbstractAttributeListener (implements org.graffiti.event.AttributeListener)
  • javax.swing.border.AbstractBorder (implements javax.swing.border.Border, java.io.Serializable)
    • org.graffiti.plugin.tool.EdgeBorder
    • org.graffiti.plugin.tool.NodeBorder
  • org.jfree.chart.labels.AbstractCategoryItemLabelGenerator (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable)
    • org.jfree.chart.labels.StandardCategoryLabelGenerator (implements org.jfree.chart.labels.CategoryLabelGenerator, java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable)
      • org.jfree.chart.labels.IntervalCategoryLabelGenerator (implements org.jfree.chart.labels.CategoryLabelGenerator, java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable)
    • org.jfree.chart.labels.StandardCategoryToolTipGenerator (implements org.jfree.chart.labels.CategoryToolTipGenerator)
      • org.jfree.chart.labels.BoxAndWhiskerToolTipGenerator (implements org.jfree.chart.labels.CategoryToolTipGenerator, java.lang.Cloneable, java.io.Serializable)
      • org.jfree.chart.labels.IntervalCategoryToolTipGenerator (implements org.jfree.chart.labels.CategoryToolTipGenerator, java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.AbstractCellEditor (implements javax.swing.CellEditor)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.JTreeTable.TreeTableCellEditor (implements javax.swing.table.TableCellEditor)
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractList<E> (implements java.util.List<E>)
      • java.util.ArrayList<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
        • org.vanted.indexednodes.IndexedEdgeList
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ListOfDataRowsExcelExport
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.TextFile
        • placement.Variables
  • org.jfree.data.AbstractDataset (implements java.lang.Cloneable, org.jfree.data.Dataset, java.io.ObjectInputValidation, java.io.Serializable)
    • org.jfree.data.AbstractSeriesDataset (implements java.io.Serializable, org.jfree.data.SeriesChangeListener, org.jfree.data.SeriesDataset)
      • org.jfree.data.AbstractXYDataset (implements org.jfree.data.XYDataset)
        • org.jfree.data.AbstractIntervalXYDataset (implements org.jfree.data.IntervalXYDataset)
          • org.jfree.data.CategoryTableXYDataset (implements org.jfree.data.DomainInfo, org.jfree.data.IntervalXYDataset, org.jfree.data.TableXYDataset)
          • org.jfree.data.CombinedDataset (implements org.jfree.data.CombinationDataset, org.jfree.data.HighLowDataset, org.jfree.data.IntervalXYDataset, org.jfree.data.XYDataset)
          • org.jfree.data.DefaultTableXYDataset (implements org.jfree.data.DomainInfo, org.jfree.data.IntervalXYDataset, org.jfree.data.TableXYDataset)
          • org.jfree.data.time.DynamicTimeSeriesCollection (implements org.jfree.data.DomainInfo, org.jfree.data.IntervalXYDataset, org.jfree.data.RangeInfo)
          • org.jfree.data.statistics.HistogramDataset (implements java.lang.Cloneable, org.jfree.data.IntervalXYDataset, java.io.Serializable)
          • org.jfree.chart.demo.SimpleIntervalXYDataset (implements org.jfree.data.IntervalXYDataset)
          • org.jfree.chart.demo.SimpleIntervalXYDataset2 (implements org.jfree.data.IntervalXYDataset)
          • org.jfree.data.SubSeriesDataset (implements org.jfree.data.CombinationDataset, org.jfree.data.HighLowDataset, org.jfree.data.IntervalXYDataset, org.jfree.data.SignalsDataset)
          • org.jfree.data.time.TimePeriodValuesCollection (implements org.jfree.data.DomainInfo, org.jfree.data.IntervalXYDataset, java.io.Serializable)
          • org.jfree.data.time.TimeSeriesCollection (implements org.jfree.data.DomainInfo, org.jfree.data.IntervalXYDataset, java.io.Serializable)
          • org.jfree.data.time.TimeTableXYDataset (implements org.jfree.data.DomainInfo, org.jfree.data.IntervalXYDataset, org.jfree.data.TableXYDataset)
          • org.jfree.data.XYBarDataset (implements org.jfree.data.DatasetChangeListener, org.jfree.data.IntervalXYDataset)
          • org.jfree.data.XYSeriesCollection (implements org.jfree.data.DomainInfo, org.jfree.data.IntervalXYDataset, java.io.Serializable)
        • org.jfree.data.AbstractXYZDataset (implements org.jfree.data.XYZDataset)
          • org.jfree.data.DefaultContourDataset (implements org.jfree.data.ContourDataset)
            • org.jfree.data.NonGridContourDataset
          • org.jfree.data.MatrixSeriesCollection (implements java.io.Serializable, org.jfree.data.XYZDataset)
          • org.jfree.chart.demo.SampleXYZDataset (implements org.jfree.data.XYZDataset)
        • org.jfree.data.statistics.DefaultBoxAndWhiskerXYDataset (implements org.jfree.data.statistics.BoxAndWhiskerXYDataset, org.jfree.data.RangeInfo)
        • org.jfree.data.DefaultHighLowDataset (implements org.jfree.data.HighLowDataset)
        • org.jfree.data.DefaultWindDataset (implements org.jfree.data.WindDataset)
        • org.jfree.chart.demo.EmptyXYDataset (implements org.jfree.data.XYDataset)
        • org.jfree.data.JDBCXYDataset (implements org.jfree.data.RangeInfo, org.jfree.data.TableXYDataset, org.jfree.data.XYDataset)
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyXML_XYDataset
        • org.jfree.data.OHLCDataset (implements org.jfree.data.HighLowDataset)
        • org.jfree.chart.demo.SampleSignalDataset (implements org.jfree.data.SignalsDataset)
        • org.jfree.chart.demo.SampleXYDataset (implements org.jfree.data.XYDataset)
        • org.jfree.chart.demo.SampleXYDataset2 (implements org.jfree.data.DomainInfo, org.jfree.data.RangeInfo, org.jfree.data.XYDataset)
      • org.jfree.data.DefaultIntervalCategoryDataset (implements org.jfree.data.IntervalCategoryDataset)
      • org.jfree.chart.demo.SampleXYSymbolicDataset (implements org.jfree.data.XisSymbolic, org.jfree.data.XYDataset, org.jfree.data.YisSymbolic)
      • org.jfree.chart.demo.SampleYSymbolicDataset (implements org.jfree.data.XYDataset, org.jfree.data.YisSymbolic)
      • org.jfree.data.gantt.TaskSeriesCollection (implements org.jfree.data.gantt.GanttCategoryDataset)
    • org.jfree.data.CategoryToPieDataset (implements org.jfree.data.DatasetChangeListener, org.jfree.data.PieDataset)
    • org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset (implements org.jfree.data.statistics.BoxAndWhiskerCategoryDataset, org.jfree.data.RangeInfo)
    • org.jfree.data.DefaultCategoryDataset (implements org.jfree.data.CategoryDataset, java.io.Serializable)
      • org.jfree.data.DefaultKeyedValues2DDataset (implements org.jfree.data.KeyedValues2DDataset, java.io.Serializable)
      • org.jfree.data.JDBCCategoryDataset
    • org.jfree.data.DefaultKeyedValueDataset (implements org.jfree.data.KeyedValueDataset, java.io.Serializable)
    • org.jfree.data.DefaultMeterDataset (implements org.jfree.data.MeterDataset, java.io.Serializable)
    • org.jfree.data.DefaultPieDataset (implements java.lang.Cloneable, org.jfree.data.PieDataset, java.io.Serializable)
      • org.jfree.data.DefaultKeyedValuesDataset (implements org.jfree.data.KeyedValuesDataset)
      • org.jfree.data.JDBCPieDataset
    • org.jfree.data.statistics.DefaultStatisticalCategoryDataset (implements org.jfree.data.RangeInfo, org.jfree.data.statistics.StatisticalCategoryDataset)
      • org.BioStatisticalCategoryDataset (implements org.jfree.data.RangeInfo)
    • org.jfree.data.DefaultValueDataset (implements java.lang.Cloneable, java.io.Serializable, org.jfree.data.ValueDataset)
    • org.jfree.data.WaferMapDataset
  • org.graffiti.event.AbstractEdgeListener (implements org.graffiti.event.EdgeListener)
  • org.graffiti.event.AbstractGraphListener (implements org.graffiti.event.GraphListener)
  • org.graffiti.plugin.io.AbstractInputSerializer (implements org.graffiti.plugin.io.InputSerializer)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.BioPAX_OWL_Reader
    • org.graffiti.plugins.ios.exporters.graphviz.DOTreader
    • org.graffiti.plugins.ios.importers.gml.GMLReader
    • org.graffiti.plugins.ios.importers.graphml.GraphMLReader (implements org.graffiti.plugin.io.InputSerializer)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kegg_xml.KEGG_XML_Reader
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kgml.KEGG_XML_Reader_g
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kegg_xml.KEGG2_XML_Reader
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.metatool.MetaToolReader
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.pajek.PajekReader
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.petri_ina_pnt.PNTReader
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_XML_Reader
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list.SIFreader
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list.TextListReader
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLReader
  • org.graffiti.plugin.io.AbstractIOSerializer (implements org.graffiti.plugin.io.InputSerializer, org.graffiti.plugin.io.OutputSerializer)
  • java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
    • java.util.HashMap<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
      • org.graffiti.event.TransactionHashMap
  • org.graffiti.plugin.mode.AbstractMode (implements org.graffiti.plugin.mode.Mode)
    • org.graffiti.plugins.modes.defaultEditMode.DefaultEditMode
  • org.graffiti.event.AbstractNodeListener (implements org.graffiti.event.NodeListener)
  • org.graffiti.plugin.io.AbstractOutputSerializer (implements org.graffiti.plugin.io.OutputSerializer)
    • org.graffiti.plugins.ios.exporters.graphviz.DOTSerializer
    • org.graffiti.plugins.ios.exporters.graphml.GraphMLWriter
      • org.graffiti.plugins.ios.exporters.graphml.GraphMLgzWriter
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.pajek.PajekWriter
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.petri_ina_pnt.PNTSerializer
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.pajek.PovrayWriter
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_XML_Writer (implements org.graffiti.plugin.io.OutputSerializer, org.graffiti.plugin.io.SupportsWriterOutput)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sif.SIFWriter
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.xwg_wilma.XWGSerializer
  • org.jfree.chart.renderer.AbstractRenderer (implements java.lang.Cloneable, java.io.Serializable)
    • org.jfree.chart.renderer.AbstractCategoryItemRenderer (implements org.jfree.chart.renderer.CategoryItemRenderer, java.lang.Cloneable, java.io.Serializable)
      • org.jfree.chart.renderer.AreaRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable)
        • org.jfree.chart.renderer.StackedAreaRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable)
      • org.jfree.chart.renderer.BarRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable)
        • org.jfree.chart.renderer.BarRenderer3D (implements java.lang.Cloneable, org.jfree.chart.Effect3D, org.jfree.util.PublicCloneable, java.io.Serializable)
          • org.jfree.chart.renderer.StackedBarRenderer3D (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable)
        • org.jfree.chart.renderer.IntervalBarRenderer (implements org.jfree.chart.renderer.CategoryItemRenderer, java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable)
          • org.jfree.chart.renderer.GanttRenderer
        • org.jfree.chart.renderer.LayeredBarRenderer
        • org.jfree.chart.renderer.StackedBarRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable)
          • org.jfree.chart.demo.ExtendedStackedBarRenderer
          • org.jfree.chart.renderer.GroupedStackedBarRenderer
        • org.jfree.chart.renderer.StatisticalBarRenderer (implements org.jfree.chart.renderer.CategoryItemRenderer, java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable)
        • org.jfree.chart.renderer.WaterfallBarRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable)
      • org.jfree.chart.renderer.BoxAndWhiskerRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable)
      • org.jfree.chart.renderer.CategoryStepRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable)
      • org.jfree.chart.renderer.LevelRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable)
      • org.jfree.chart.renderer.LineAndShapeRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable)
        • org.jfree.chart.renderer.DefaultCategoryItemRenderer
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyLineAndShapeRenderer
      • org.jfree.chart.renderer.MinMaxCategoryRenderer
    • org.jfree.chart.renderer.AbstractXYItemRenderer (implements java.lang.Cloneable, java.io.Serializable, org.jfree.chart.renderer.XYItemRenderer)
      • org.jfree.chart.renderer.AreaXYRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable, org.jfree.chart.renderer.XYItemRenderer)
      • org.jfree.chart.renderer.CandlestickRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable, org.jfree.chart.renderer.XYItemRenderer)
      • org.jfree.chart.renderer.HighLowRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable, org.jfree.chart.renderer.XYItemRenderer)
      • org.jfree.chart.renderer.SignalRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable, org.jfree.chart.renderer.XYItemRenderer)
      • org.jfree.chart.renderer.StandardXYItemRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable, org.jfree.chart.renderer.XYItemRenderer)
        • org.jfree.chart.renderer.CyclicXYItemRenderer
        • org.jfree.chart.renderer.DefaultXYItemRenderer
      • org.jfree.chart.renderer.WindItemRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable, org.jfree.chart.renderer.XYItemRenderer)
      • org.jfree.chart.renderer.XYAreaRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable, org.jfree.chart.renderer.XYItemRenderer)
        • org.jfree.chart.renderer.StackedXYAreaRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable)
          • org.jfree.chart.renderer.StackedAreaXYRenderer
      • org.jfree.chart.renderer.XYAreaRenderer2 (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable, org.jfree.chart.renderer.XYItemRenderer)
        • org.jfree.chart.renderer.StackedXYAreaRenderer2 (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable)
      • org.jfree.chart.renderer.XYBarRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable, org.jfree.chart.renderer.XYItemRenderer)
        • org.jfree.chart.renderer.ClusteredXYBarRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable)
        • org.jfree.chart.renderer.StackedXYBarRenderer
      • org.jfree.chart.renderer.XYBoxAndWhiskerRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable, org.jfree.chart.renderer.XYItemRenderer)
      • org.jfree.chart.renderer.XYBubbleRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable, org.jfree.chart.renderer.XYItemRenderer)
      • org.jfree.chart.renderer.XYDifferenceRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable, org.jfree.chart.renderer.XYItemRenderer)
      • org.jfree.chart.renderer.XYDotRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable, org.jfree.chart.renderer.XYItemRenderer)
      • org.jfree.chart.renderer.XYLineAndShapeRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable, org.jfree.chart.renderer.XYItemRenderer)
      • org.jfree.chart.renderer.XYStepAreaRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable, org.jfree.chart.renderer.XYItemRenderer)
      • org.jfree.chart.renderer.XYStepRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable, org.jfree.chart.renderer.XYItemRenderer)
      • org.jfree.chart.renderer.YIntervalRenderer (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable, org.jfree.chart.renderer.XYItemRenderer)
    • org.jfree.chart.renderer.DefaultPolarItemRenderer (implements org.jfree.chart.renderer.PolarItemRenderer)
    • org.jfree.chart.renderer.WaferMapRenderer
  • org.graffiti.plugin.io.resources.AbstractResourceIOHandler (implements org.graffiti.plugin.io.resources.ResourceIOHandler)
    • org.graffiti.plugin.io.resources.FileSystemHandler
    • org.graffiti.plugin.io.resources.FTPhandler
    • org.graffiti.plugin.io.resources.HTTPhandler
    • org.graffiti.plugin.io.resources.HTTPShandler
  • org.graffiti.plugin.parameter.AbstractSingleParameter (implements org.graffiti.plugin.parameter.SingleParameter)
    • org.graffiti.plugin.parameter.AbstractLimitableParameter (implements org.graffiti.plugin.parameter.LimitableParameter)
      • org.graffiti.plugin.parameter.DoubleParameter (implements scenario.ProvidesScenarioSupportCommand)
      • org.graffiti.plugin.parameter.FloatParameter
      • org.graffiti.plugin.parameter.IntegerParameter (implements scenario.ProvidesScenarioSupportCommand)
        • org.vanted.plugins.layout.stressminimization.parameters.LandmarkParameter
    • org.graffiti.plugin.parameter.BooleanParameter (implements scenario.ProvidesScenarioSupportCommand)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorParameter
    • org.graffiti.plugin.parameter.ColorParameter
    • org.graffiti.plugin.parameter.EdgeParameter
    • org.graffiti.plugin.parameter.EnumParameter
    • org.graffiti.plugin.parameter.JComponentParameter
    • org.graffiti.plugin.parameter.NodeParameter
    • org.graffiti.plugin.parameter.ObjectListParameter
    • org.graffiti.plugin.parameter.ObjectParameter
    • org.graffiti.plugin.parameter.SelectionParameter
    • org.vanted.plugins.layout.stressminimization.parameters.SliderParameter
    • org.graffiti.plugin.parameter.StringParameter (implements scenario.ProvidesScenarioSupportCommand)
      • org.graffiti.plugin.parameter.MultiFileSelectionParameter
  • javax.swing.table.AbstractTableModel (implements java.io.Serializable, javax.swing.table.TableModel)
    • javax.swing.table.DefaultTableModel (implements java.io.Serializable)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.AddonTableModel
    • qmwi.kseg.som.diagram.DiagrammPaneData
    • org.graffiti.plugins.views.matrix.MatrixModel (implements org.graffiti.event.GraphListener)
    • qmwi.kseg.som.diagram.TableDataTest
    • org.jfree.data.TimeSeriesTableModel (implements org.jfree.data.SeriesChangeListener)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.TreeTableModelAdapter
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.XlsTableModel
    • org.jfree.data.XYDatasetTableModel (implements org.jfree.data.DatasetChangeListener, javax.swing.table.TableModel)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.AbstractTreeTableModel (implements de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.TreeTableModel)
  • javax.swing.undo.AbstractUndoableEdit (implements java.io.Serializable, javax.swing.undo.UndoableEdit)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.zoomfit.AlignNodesCommand
    • org.graffiti.undo.GraffitiAbstractUndoableEdit
      • org.graffiti.undo.ChangeAttributesEdit
      • org.graffiti.undo.GraphElementsEdit
        • org.graffiti.undo.AddEdgeEdit
        • org.graffiti.undo.AddNodeEdit
        • org.graffiti.undo.GraphElementsDeletionEdit
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.KeggNavigationToolbarCommand
  • org.jfree.chart.labels.AbstractXYItemLabelGenerator (implements java.lang.Cloneable, java.io.Serializable)
    • org.jfree.chart.labels.StandardXYLabelGenerator (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable, org.jfree.chart.labels.XYLabelGenerator)
    • org.jfree.chart.labels.StandardXYToolTipGenerator (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable, org.jfree.chart.labels.XYToolTipGenerator)
      • org.jfree.chart.labels.BoxAndWhiskerXYToolTipGenerator (implements java.lang.Cloneable, java.io.Serializable, org.jfree.chart.labels.XYToolTipGenerator)
      • org.jfree.chart.labels.StandardXYZToolTipGenerator (implements org.jfree.chart.labels.XYZToolTipGenerator)
  • org.vanted.plugins.layout.adaptagrams.AdaptagramsLibrary
  • org.vanted.plugins.layout.adaptagrams.edgerouting.AdaptagramsRouting
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.Addon
  • de.ipk_gatersleben.ag_nw.graffiti.services.AlgorithmServices (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.AllSuperGraphsCreator (implements org.BackgroundTaskStatusProvider, java.lang.Runnable)
  • org.vanted.animation.Animation<T>
    • org.vanted.animation.ContinuousAnimation<T>
      • org.vanted.animation.animations.ArrowSizeAnimation
      • org.vanted.animation.animations.ColorAnimation
        • org.vanted.animation.animations.FillColorAnimation
        • org.vanted.animation.animations.LabelColorAnimation
        • org.vanted.animation.animations.OutlineColorAnimation
      • org.vanted.animation.animations.FrameThicknessAnimation
      • org.vanted.animation.animations.OpacityAnimation
        • org.vanted.animation.animations.HideAnimation
      • org.vanted.animation.animations.Position2DAnimation
      • org.vanted.animation.animations.PositionXAnimation
      • org.vanted.animation.animations.PositionYAnimation
      • org.vanted.animation.animations.SizeAnimation
    • org.vanted.animation.animations.LabelTextAnimation
    • org.vanted.animation.animations.VisibilityAnimation
  • org.vanted.animation.Animator
  • org.vanted.animation.AnimatorAdapter<T> (implements org.vanted.animation.AnimatorListener<T>)
  • org.vanted.animation.AnimatorData
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.Annotation
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph.ApplyGraphLayout (implements org.graffiti.plugin.algorithm.Algorithm)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.AreaManager
  • org.jfree.chart.renderer.AreaRendererEndType (implements java.io.Serializable)
  • org.graffiti.plugins.editcomponents.defaults.ArrowShapeCellRenderer (implements javax.swing.ListCellRenderer<E>)
  • org.graffiti.event.AttributeAdapter (implements org.graffiti.event.AttributeListener)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.KineticLawHelper
  • org.graffiti.managers.AttributeComponentManager (implements org.graffiti.managers.pluginmgr.PluginManagerListener)
  • de.ipk_gatersleben.ag_nw.graffiti.AttributeConstants
  • org.graffiti.attributes.AttributeDescription
  • org.AttributeHelper (implements org.HelperClass)
  • org.graffiti.attributes.AttributeManager
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.AttributePathNameSearchType
  • org.graffiti.attributes.AttributeTypesManager (implements org.graffiti.managers.pluginmgr.PluginManagerListener)
  • qmwi.kseg.som.diagram.AttributsAll
  • qmwi.kseg.som.diagram.AttributsAttribut
  • qmwi.kseg.som.diagram.AttributsClass
  • qmwi.kseg.som.diagram.AttributsComputing
  • org.jfree.chart.axis.Axis (implements java.lang.Cloneable, java.io.Serializable)
    • org.jfree.chart.axis.CategoryAxis (implements java.lang.Cloneable, java.io.Serializable)
      • org.jfree.chart.axis.CategoryAxis3D (implements java.lang.Cloneable, java.io.Serializable)
      • org.jfree.chart.axis.ExtendedCategoryAxis
      • org.jfree.chart.axis.SubCategoryAxis (implements java.lang.Cloneable, java.io.Serializable)
    • org.jfree.chart.axis.ValueAxis (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable)
      • org.jfree.chart.axis.DateAxis (implements java.lang.Cloneable, java.io.Serializable)
      • org.jfree.chart.axis.NumberAxis (implements java.lang.Cloneable, java.io.Serializable)
        • org.jfree.chart.axis.CyclicNumberAxis
        • org.jfree.chart.axis.LogarithmicAxis
        • org.jfree.chart.axis.NumberAxis3D (implements java.io.Serializable)
        • org.jfree.chart.axis.SymbolicAxis (implements java.io.Serializable)
  • org.jfree.chart.axis.AxisCollection
  • org.jfree.chart.axis.AxisLocation (implements java.io.Serializable)
  • org.jfree.chart.axis.AxisSpace (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable)
  • org.jfree.chart.axis.AxisState
  • de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskHelper (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskStatusProviderSupportingExternalCallImpl (implements org.BackgroundTaskStatusProviderSupportingExternalCall)
    • de.ipk_gatersleben.ag_nw.graffiti.services.BackgroundTaskConsoleLogger
  • org.graffiti.plugins.ios.exporters.graphml.Base64
  • org.graffiti.plugins.ios.importers.graphml.parser.Base64
  • org.vanted.scaling.scalers.BasicScaler (implements org.vanted.scaling.scalers.Scaler)
    • org.vanted.scaling.scalers.component.ComponentScaler
      • org.vanted.scaling.scalers.component.AbstractButtonScaler (implements org.vanted.scaling.scalers.component.HTMLScaler)
      • org.vanted.scaling.scalers.component.JLabelScaler (implements org.vanted.scaling.scalers.component.HTMLScaler)
      • org.vanted.scaling.scalers.component.JOptionPaneScaler
      • org.vanted.scaling.scalers.component.JSplitPaneScaler
      • org.vanted.scaling.scalers.component.JTabbedPaneScaler (implements org.vanted.scaling.scalers.component.HTMLScaler)
      • org.vanted.scaling.scalers.component.JTextComponentScaler (implements org.vanted.scaling.scalers.component.HTMLScaler)
      • org.vanted.scaling.scalers.component.WindowScaler
    • org.vanted.scaling.scalers.NimbusScaler
    • org.vanted.scaling.scalers.WindowsScaler
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter
  • placement.Block
  • org.graffiti.plugins.inspectors.defaults.BooledAttribute
  • org.graffiti.util.BoolPair
  • org.jfree.data.statistics.BoxAndWhiskerCalculator
  • org.jfree.data.statistics.BoxAndWhiskerItem (implements java.io.Serializable)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.BriteEntry
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.BriteHierarchy
  • de.ipk_gatersleben.ag_nw.graffiti.services.network.BroadCastService (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.BSHinfo
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.BufferedImageResult
  • org.vanted.BuildInfo (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.CachedWebDownload
  • org.vanted.updater.CalcClassPathJarsMd5
  • org.jfree.chart.axis.CategoryAnchor (implements java.io.Serializable)
  • org.jfree.chart.axis.CategoryLabelPosition (implements java.io.Serializable)
  • org.jfree.chart.axis.CategoryLabelPositions (implements java.io.Serializable)
  • org.jfree.chart.axis.CategoryLabelWidthType (implements java.io.Serializable)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartComponentManager
  • org.jfree.chart.entity.ChartEntity (implements java.lang.Cloneable, java.io.Serializable)
    • org.jfree.chart.entity.CategoryItemEntity (implements java.lang.Cloneable, java.io.Serializable)
    • org.jfree.chart.entity.ContourEntity (implements java.lang.Cloneable, java.io.Serializable)
    • org.jfree.chart.entity.LegendItemEntity (implements java.lang.Cloneable, java.io.Serializable)
    • org.jfree.chart.entity.PieSectionEntity
    • org.jfree.chart.entity.TickLabelEntity (implements java.lang.Cloneable, java.io.Serializable)
    • org.jfree.chart.entity.XYItemEntity
  • org.jfree.chart.ChartFactory
  • org.jfree.chart.ChartMouseEvent
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ChartOptions
  • org.jfree.chart.ChartRenderingInfo (implements java.lang.Cloneable, java.io.Serializable)
  • org.jfree.chart.demo.ChartTiming1 (implements java.awt.event.ActionListener)
  • org.jfree.chart.demo.ChartTiming2 (implements java.awt.event.ActionListener)
  • org.jfree.chart.demo.ChartTiming3 (implements java.awt.event.ActionListener)
  • org.jfree.chart.demo.ChartTiming4 (implements java.awt.event.ActionListener)
  • org.jfree.chart.ChartUtilities
  • org.vanted.updater.CheckUpdateDate
  • org.jfree.chart.demo.CircleDrawer (implements org.jfree.ui.Drawable)
  • qmwi.kseg.som.diagram.ClassesAll
  • qmwi.kseg.som.diagram.ClassesClass
  • qmwi.kseg.som.diagram.ClassesNeuron
  • qmwi.kseg.som.diagram.ClassesObject
  • qmwi.kseg.som.diagram.ClassesObjectInputVector
  • org.graffiti.plugins.inspectors.defaults.ClassPathAttributeCollector
  • org.graffiti.managers.pluginmgr.ClassPathPluginDescriptionCollector (implements org.graffiti.managers.pluginmgr.PluginDescriptionCollector)
  • org.graffiti.editor.actions.ClipboardService (implements org.HelperClass)
  • org.jfree.chart.ClipPath (implements java.lang.Cloneable)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.ClusterAnalysisMain
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.ClusterBackgroundDraw
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.ClusterSplashScreen (implements org.graffiti.editor.SplashScreenInterface)
  • java.awt.Color (implements java.awt.Paint, java.io.Serializable)
    • org.jfree.chart.ChartColor
  • org.color.Color_CIE_Lab
  • org.jfree.chart.axis.ColorBar (implements java.lang.Cloneable, java.io.Serializable)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ColorHelper (implements org.HelperClass)
  • org.jfree.chart.ui.ColorPalette (implements java.lang.Cloneable, java.io.Serializable)
    • org.jfree.chart.ui.GreyPalette (implements java.io.Serializable)
    • org.jfree.chart.ui.RainbowPalette (implements java.io.Serializable)
  • org.Colors (implements org.HelperClass)
  • org.color.ColorUtil
  • org.color.ColorXYZ
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.CommandLineStart
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Component
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.AbstractButton (implements java.awt.ItemSelectable, javax.swing.SwingConstants)
          • javax.swing.JButton (implements javax.accessibility.Accessible)
            • org.graffiti.plugin.gui.GraffitiButton (implements org.graffiti.plugin.gui.GraffitiComponent)
            • org.JMButton
              • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.MappingButton
              • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.MyScenarioEditor
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.MyColorButton
          • javax.swing.JMenuItem (implements javax.accessibility.Accessible, javax.swing.MenuElement)
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.BSHscriptMenuEntry
            • org.graffiti.plugin.gui.GraffitiMenuItem (implements org.graffiti.plugin.gui.GraffitiComponent)
            • javax.swing.JMenu (implements javax.accessibility.Accessible, javax.swing.MenuElement)
              • org.graffiti.plugin.gui.GraffitiMenu (implements org.graffiti.plugin.gui.GraffitiComponent)
                • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_dbe.MenuItemInfoDialog (implements org.graffiti.plugin.gui.GraffitiContainer)
                • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_example.MenuItemInfoDialog (implements org.graffiti.plugin.gui.GraffitiContainer)
                • org.graffiti.plugins.guis.switchselections.SelectionMenu (implements org.graffiti.plugin.gui.GraffitiComponent, org.graffiti.selection.SelectionListener, org.graffiti.session.SessionListener)
            • org.graffiti.editor.RecentEntry
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.RubyScriptMenuEntry
          • javax.swing.JToggleButton (implements javax.accessibility.Accessible)
            • org.graffiti.plugin.gui.GraffitiToggleButton (implements org.graffiti.plugin.gui.GraffitiComponent)
              • org.graffiti.plugin.gui.ToolButton (implements java.awt.event.ActionListener, org.graffiti.plugin.gui.GraffitiToolComponent)
            • javax.swing.JCheckBox (implements javax.accessibility.Accessible)
              • org.vanted.scaling.resources.ImmutableCheckBox
              • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.relation_gui.SubComponentNameCheckBox
              • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.TristateCheckBox
        • org.graffiti.editor.dialog.AbstractValueEditContainer (implements org.graffiti.editor.dialog.ValueEditContainer)
          • org.graffiti.editor.dialog.AbstractGraffitiValueEditContainer
        • org.graffiti.plugin.view.AbstractView (implements org.graffiti.plugin.view.View)
          • org.graffiti.plugins.views.defaults.GraffitiView (implements org.graffiti.event.AttributeListener, org.graffiti.event.EdgeListener, org.graffiti.event.GraphListener, org.graffiti.plugin.view.GraphView, org.graffiti.event.NodeListener, org.graffiti.event.TransactionListener, org.graffiti.plugin.view.View2D)
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKGraffitiView (implements org.graffiti.options.OptionPane, de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.PaintStatusSupport, org.graffiti.options.PreferencesInterface, java.awt.print.Printable)
              • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.ButtonOverlayView
          • org.graffiti.plugins.views.matrix.MatrixView (implements java.awt.event.ActionListener, org.graffiti.attributes.AttributeConsumer)
        • org.graffiti.plugin.view.AttributeComponent (implements org.graffiti.plugin.view.GraffitiViewComponent)
          • org.graffiti.plugin.attributecomponent.AbstractAttributeComponent (implements org.graffiti.plugin.view.GraffitiViewComponent)
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartAttributeComponent (implements org.graffiti.graphics.GraphicAttributeConstants, org.graffiti.options.PreferencesInterface)
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundImageAttributeComponent (implements org.graffiti.graphics.GraphicAttributeConstants)
            • org.graffiti.plugins.attributecomponents.simplelabel.LabelComponent (implements org.graffiti.graphics.GraphicAttributeConstants, org.graffiti.options.PreferencesInterface)
              • org.graffiti.plugins.attributecomponents.simplelabel.SimpleLabelComponent (implements org.graffiti.graphics.GraphicAttributeConstants)
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayLinkVisualizationComponent (implements java.awt.event.MouseMotionListener)
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.reaction_gui.CompoundListEditor
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataInfoPane (implements org.graffiti.session.SessionListener)
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView (implements org.graffiti.plugin.view.GraphView, java.awt.print.Printable)
        • org.FolderPanel
        • org.graffiti.plugin.view.GraphElementComponent (implements org.graffiti.plugin.view.GraffitiViewComponent, org.graffiti.plugin.view.GraphElementComponentInterface, org.graffiti.graphics.GraphicAttributeConstants)
          • org.graffiti.plugins.views.defaults.AbstractGraphElementComponent (implements org.graffiti.plugin.view.GraffitiViewComponent, org.graffiti.graphics.GraphicAttributeConstants)
            • org.graffiti.plugins.views.defaults.EdgeComponent (implements org.graffiti.plugin.view.EdgeComponentInterface)
            • org.graffiti.plugins.views.defaults.NodeComponent (implements org.graffiti.plugin.view.NodeComponentInterface)
              • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKnodeComponent
        • org.graffiti.plugin.inspector.InspectorTab (implements java.awt.event.ComponentListener)
          • org.graffiti.plugins.inspectors.defaults.AbstractTab (implements org.graffiti.event.AttributeListener, org.graffiti.selection.SelectionListener, org.graffiti.session.SessionListener)
            • org.graffiti.plugins.inspectors.defaults.EdgeTab
            • org.graffiti.plugins.inspectors.defaults.GraphTab
            • org.graffiti.plugins.inspectors.defaults.NodeTab
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkTab
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.TabExampleFiles
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.TabMetaCrop (implements org.graffiti.options.PreferencesInterface)
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.RimasTab (implements org.graffiti.options.PreferencesInterface)
          • org.graffiti.plugin.inspector.SubtabHostTab (implements org.graffiti.plugin.inspector.ContainsTabbedPane, org.graffiti.selection.SelectionListener, org.graffiti.session.SessionListener, org.graffiti.plugin.view.ViewListener)
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network.TabAglet (implements java.lang.Runnable)
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.TabBiomodels
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TabDBE (implements de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataPresenter)
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.TabKegg (implements java.awt.event.ActionListener, org.BackgroundTaskStatusProvider)
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network.TabNetworkAlgorithms
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPatternLayout
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPluginControl (implements org.graffiti.selection.SelectionListener, org.graffiti.session.SessionListener)
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics (implements java.awt.event.ActionListener, org.graffiti.plugin.inspector.ContainsTabbedPane)
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabVisualisationControl
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.WorkflowHelper (implements org.graffiti.plugin.inspector.ContainsTabbedPane, org.HelperClass, scenario.ScenarioGui)
        • javax.swing.JComboBox<E> (implements javax.accessibility.Accessible, java.awt.event.ActionListener, java.awt.ItemSelectable, javax.swing.event.ListDataListener)
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.reaction_gui.ReactionTypeSelection
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.relation_gui.RelationTypeEditor
        • javax.swing.JInternalFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
          • org.graffiti.editor.GraffitiInternalFrame
          • org.graffiti.util.MaximizeFrame
        • javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • de.ipk_gatersleben.ag_nw.graffiti.services.algorithms.AlgorithmListCellRenderer (implements javax.swing.ListCellRenderer<E>)
          • javax.swing.table.DefaultTableCellRenderer (implements java.io.Serializable, javax.swing.table.TableCellRenderer)
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.ClickableHTMLtableCellRenderer (implements javax.swing.table.TableCellRenderer)
          • org.graffiti.plugins.views.defaults.DockingAttributeEditor.EdgeDockingRenderer (implements javax.swing.ListCellRenderer<E>)
          • org.graffiti.plugins.views.defaults.GradientFillAttributeEditor.NodeGradientRenderer (implements javax.swing.ListCellRenderer<E>)
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.gui.GraphElementSelectionLabel
          • de.ipk_gatersleben.ag_nw.graffiti.JLabelHTMLlink
          • org.JLabelJavaHelpLink
          • org.graffiti.editor.MyJLabel
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.MySpecialValueCellRenderer (implements javax.swing.table.TableCellRenderer)
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment.PositionButton
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.ReactionLabel
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.RelationLabel
          • org.graffiti.plugins.attributecomponents.simplelabel.ViewLabel
        • javax.swing.JList<E> (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • net.iharder.dnd.DnDList (implements java.awt.dnd.DragGestureListener, java.awt.dnd.DragSourceListener, java.awt.dnd.DropTargetListener)
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.MutableList<T>
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.reaction_gui.MyReactionList
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.relation_gui.MyRelationList
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • org.graffiti.plugin.gui.AbstractGraffitiComponent (implements org.graffiti.plugin.gui.GraffitiComponent)
            • org.graffiti.plugin.gui.AbstractGraffitiContainer (implements org.graffiti.plugin.gui.GraffitiContainer)
              • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation.NavigationComponentView (implements java.awt.event.AdjustmentListener, org.graffiti.event.GraphListener, org.graffiti.session.SessionListener)
              • org.graffiti.plugin.gui.PluginPanel
            • org.graffiti.plugins.tools.enhancedzoomtool.ZoomChangeComponent (implements java.awt.event.ActionListener, org.graffiti.session.SessionListener, org.graffiti.plugin.view.ViewListener)
            • org.graffiti.plugins.tools.zoomtool.ZoomChangeComponent (implements java.awt.event.ActionListener, org.graffiti.session.SessionListener, org.graffiti.plugin.view.ViewListener)
          • org.graffiti.options.AbstractOptionPane (implements org.graffiti.options.OptionPane)
            • org.graffiti.options.AddonsOptionsPane
            • org.graffiti.editor.options.LoadSaveOptionsPane
            • org.graffiti.options.OverviewOptionPane
            • org.graffiti.options.ParameterOptionPane
            • org.graffiti.editor.options.ShortcutsOptionPane
            • org.graffiti.editor.options.ToolBarOptionPane
          • de.ipk_gatersleben.ag_nw.graffiti.services.algorithms.AlgorithmPanelFactory (implements org.graffiti.selection.SelectionListener, javax.swing.event.TreeSelectionListener)
          • org.jfree.chart.ui.AxisPropertyEditPanel (implements java.awt.event.ActionListener)
            • org.jfree.chart.ui.ColorBarPropertyEditPanel
          • de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskPanelEntry (implements de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskGUIprovider)
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsPanel (implements java.awt.event.ActionListener, de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter.BiomodelsLoaderCallback, java.awt.event.KeyListener)
          • org.jfree.chart.ChartPanel (implements java.awt.event.ActionListener, org.jfree.chart.event.ChartChangeListener, org.jfree.chart.ChartPanelConstants, org.jfree.chart.event.ChartProgressListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.print.Printable, java.io.Serializable)
            • org.jfree.chart.PolarChartPanel
          • org.jfree.chart.ui.ChartPropertyEditPanel (implements java.awt.event.ActionListener)
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.CheckTreeCellRenderer (implements javax.swing.tree.TreeCellRenderer)
          • org.graffiti.plugins.inspectors.defaults.ClickableInspectorLabel
          • org.jfree.chart.demo.CompassDemo
          • placement.DebugPanel
          • org.jfree.chart.demo.DescriptionPanel
          • org.graffiti.plugin.inspector.EditPanel
            • org.graffiti.plugins.inspectors.defaults.DefaultEditPanel
          • org.jfree.chart.plot.JThermometer (implements java.io.Serializable)
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyLegendComponent
          • org.graffiti.editor.MyScrollLabel
          • org.jfree.chart.ui.PaletteChooserPanel
          • org.graffiti.editor.dialog.ParameterEditPanel
          • org.jfree.chart.ui.PlotPropertyEditPanel (implements java.awt.event.ActionListener)
          • placement.RectangleDrawerPanel (implements javax.swing.event.MouseInputListener, java.util.Observer, java.awt.print.Printable)
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.relation_gui.SrcTargetEditor
          • org.graffiti.editor.StatusBar (implements org.graffiti.event.GraphListener, org.graffiti.selection.SelectionListener, org.graffiti.session.SessionListener)
          • org.vanted.plugins.layout.stressminimization.StressMinParamModel.MethodAlphaGroup
          • org.vanted.plugins.layout.stressminimization.StressMinParamModel.MethodEdgeScaleGroup
          • org.vanted.plugins.layout.stressminimization.StressMinParamModel.MethodRadioGroup
          • org.vanted.plugins.layout.stressminimization.StressMinParamModel.PreprocessingGroup
          • org.vanted.plugins.layout.stressminimization.StressMinParamModel.TerminationCheckboxGroup
          • org.vanted.plugins.layout.stressminimization.StressMinParamModel.TerminationStressChangeGroup
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.relation_gui.SubComponentTypesEditor
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.relation_gui.SubtypeCompoundEditor
          • org.jfree.chart.demo.ThermometerDemo
          • org.jfree.chart.ui.TitlePropertyEditPanel (implements java.awt.event.ActionListener)
        • javax.swing.JSlider (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • org.vanted.scaling.resources.ImmutableSlider
            • org.vanted.scaling.ScalingSlider (implements javax.swing.event.ChangeListener, java.awt.event.FocusListener, java.io.Serializable)
        • javax.swing.JSplitPane (implements javax.accessibility.Accessible)
          • org.graffiti.editor.JMyProgressSplitPane
        • javax.swing.JTabbedPane (implements javax.accessibility.Accessible, java.io.Serializable, javax.swing.SwingConstants)
          • org.graffiti.editor.FrameTabbedPane (implements org.graffiti.plugin.view.ViewListener)
          • org.graffiti.plugins.inspectors.defaults.InspectorContainer (implements org.graffiti.plugin.gui.GraffitiContainer)
        • javax.swing.JTable (implements javax.accessibility.Accessible, javax.swing.event.CellEditorListener, javax.swing.event.ListSelectionListener, javax.swing.event.RowSorterListener, javax.swing.Scrollable, javax.swing.event.TableColumnModelListener, javax.swing.event.TableModelListener)
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.JTreeTable
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.MyDataJTable
        • javax.swing.text.JTextComponent (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • javax.swing.JTextField (implements javax.swing.SwingConstants)
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.reaction_gui.ReactionIdEditor
        • javax.swing.JToolBar (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.zoomfit.AlignNodesComponent (implements java.awt.event.ActionListener, org.graffiti.plugin.gui.GraffitiComponent, org.graffiti.session.SessionListener, org.graffiti.undo.Undoable, org.graffiti.plugin.view.ViewListener)
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.ClusterHelperToolbarComponent (implements java.awt.event.ActionListener, org.graffiti.plugin.gui.GraffitiComponent, org.graffiti.session.SessionListener, org.graffiti.undo.Undoable)
          • org.graffiti.plugin.gui.GraffitiToolbar (implements org.graffiti.plugin.gui.GraffitiContainer)
            • org.graffiti.plugin.gui.ModeToolbar
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SelectNodesComponent (implements org.graffiti.plugin.gui.GraffitiComponent, org.graffiti.session.SessionListener, org.graffiti.plugin.view.ViewListener)
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.zoomfit.ZoomFitChangeComponent (implements java.awt.event.ActionListener, org.graffiti.plugin.gui.GraffitiComponent, org.graffiti.selection.SelectionListener, org.graffiti.session.SessionListener, org.graffiti.plugin.view.ViewListener, org.graffiti.plugin.view.ZoomListener)
        • javax.swing.JTree (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.JTreeTable.TreeTableCellRenderer (implements javax.swing.table.TableCellRenderer)
        • org.MarkComponent
        • org.vanted.plugins.layout.multilevelframework.MLFParamModel.LayoutAlgGroup
        • org.vanted.plugins.layout.multilevelframework.MLFParamModel.MergerGroup
        • org.vanted.plugins.layout.multilevelframework.MLFParamModel.PlacerGroup
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyColorGrid
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings.OptionSetter
        • org.jfree.chart.ui.PaletteSample (implements javax.swing.ListCellRenderer<E>)
        • org.graffiti.editor.Rule
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOptionEditorGUI
        • org.graffiti.plugins.modes.defaults.SelectionRectangle
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.Star
        • org.graffiti.editor.WarningButton
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.XmlDataChartComponent
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.XMLdataTablePane
      • java.awt.Panel (implements javax.accessibility.Accessible)
        • java.applet.Applet
          • javax.swing.JApplet (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer)
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.GravistoMain
            • org.jfree.chart.demo.JFreeChartAppletDemo
        • org.graffiti.editor.ShowImage
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Dialog
          • javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • org.graffiti.editor.dialog.AbstractParameterDialog (implements org.graffiti.editor.dialog.ParameterDialog)
              • org.graffiti.editor.dialog.DefaultParameterDialog (implements java.awt.event.ActionListener, java.awt.event.WindowListener)
            • de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskWindow (implements java.awt.event.ActionListener, de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskGUIprovider)
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.FontChooser (implements java.awt.event.ActionListener)
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.gui.KGMLerrorWindow
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.ManageAddonDialog
            • org.graffiti.options.OptionsDialog (implements java.awt.event.ActionListener, javax.swing.event.TreeSelectionListener)
            • org.graffiti.managers.pluginmgr.PluginManagerDialog (implements java.awt.event.ActionListener, javax.swing.event.ListSelectionListener, javax.swing.event.TableModelListener)
            • org.graffiti.managers.pluginmgr.PluginSelector (implements java.awt.event.ActionListener, javax.swing.event.ListSelectionListener, java.awt.event.MouseListener, java.awt.event.WindowListener)
            • org.graffiti.options.PreferencePanel
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings.PreferencesDialog (implements org.graffiti.managers.pluginmgr.PluginManagerListener)
            • de.ipk_gatersleben.ag_nw.graffiti.services.RunAlgorithmDialog (implements de.ipk_gatersleben.ag_nw.graffiti.services.HandlesAlgorithmData)
            • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchDialog
            • org.vanted.updater.UpdateMessageDialog
            • org.graffiti.editor.ViewTypeChooser (implements java.awt.event.ActionListener, javax.swing.event.ListSelectionListener, java.awt.event.MouseListener, java.awt.event.WindowListener)
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.MessageBox (implements java.awt.event.ActionListener, java.awt.event.WindowListener)
        • java.awt.Frame (implements java.awt.MenuContainer)
          • javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • org.jfree.ui.ApplicationFrame (implements java.awt.event.WindowListener)
              • org.jfree.chart.demo.AreaChartDemo
              • org.jfree.chart.demo.BarChart3DDemo1
              • org.jfree.chart.demo.BarChart3DDemo2
              • org.jfree.chart.demo.BarChart3DDemo3
              • org.jfree.chart.demo.BarChartDemo
              • org.jfree.chart.demo.BarChartDemo2
              • org.jfree.chart.demo.BarChartDemo3
              • org.jfree.chart.demo.BarChartDemo4
              • org.jfree.chart.demo.BarChartDemo5
              • org.jfree.chart.demo.BarChartDemo6
              • org.jfree.chart.demo.BarChartDemo7
              • org.jfree.chart.demo.BarChartDemo8
              • org.jfree.chart.demo.BoxAndWhiskerDemo
              • org.jfree.chart.demo.BubblePlotDemo
              • org.jfree.chart.demo.BubblyBubblesDemo
              • org.jfree.chart.demo.BubblyBubblesDemo2
              • org.jfree.chart.demo.CandlestickDemo
              • org.jfree.chart.demo.CategoryStepChartDemo
              • org.jfree.chart.demo.ChartPanelSerializationTest
              • org.jfree.chart.demo.CombinedCategoryPlotDemo1
              • org.jfree.chart.demo.CombinedCategoryPlotDemo2
              • org.jfree.chart.demo.CombinedXYPlotDemo1
              • org.jfree.chart.demo.CombinedXYPlotDemo2
              • org.jfree.chart.demo.CombinedXYPlotDemo3
              • org.jfree.chart.demo.CombinedXYPlotDemo4
              • org.jfree.chart.demo.CombinedXYPlotDemo5
              • org.jfree.chart.demo.CompassDemo2
              • org.jfree.chart.demo.CompassFormatDemo
              • org.jfree.chart.demo.ContourPlotDemo
              • org.jfree.chart.demo.ContourPlotDemo2
              • org.jfree.chart.demo.CrosshairDemo1
              • org.jfree.chart.demo.CyclicXYPlotDemo (implements java.awt.event.ActionListener)
              • org.jfree.chart.demo.DifferenceChartDemo
              • org.jfree.chart.demo.DifferenceChartDemo2
              • org.jfree.chart.demo.DualAxisDemo
              • org.jfree.chart.demo.DualAxisDemo2
              • org.jfree.chart.demo.DualAxisDemo3
              • org.jfree.chart.demo.DualAxisDemo4
              • org.jfree.chart.demo.DualAxisDemo5
              • org.jfree.chart.demo.DynamicDataDemo (implements java.awt.event.ActionListener)
              • org.jfree.chart.demo.DynamicDataDemo2 (implements java.awt.event.ActionListener)
              • org.jfree.chart.demo.DynamicDataDemo3 (implements java.awt.event.ActionListener)
              • org.jfree.chart.demo.EventFrequencyDemo
              • org.jfree.chart.demo.FastScatterPlotDemo
              • org.jfree.chart.demo.GanttDemo1
              • org.jfree.chart.demo.GanttDemo2
              • org.jfree.chart.demo.HighLowChartDemo
              • org.jfree.chart.demo.HighLowChartDemo2
              • org.jfree.chart.demo.HistogramDemo
              • org.jfree.chart.demo.HistogramDemo2
              • org.jfree.chart.demo.InternalFrameDemo
              • org.jfree.chart.demo.ItemLabelDemo1
              • org.jfree.chart.demo.ItemLabelDemo2
              • org.jfree.chart.demo.LayeredBarChartDemo1
              • org.jfree.chart.demo.LayeredBarChartDemo2
              • org.jfree.chart.demo.LegendManiaDemo
              • org.jfree.chart.demo.LineChartDemo1
              • org.jfree.chart.demo.LineChartDemo2
              • org.jfree.chart.demo.LineChartDemo3
              • org.jfree.chart.demo.LineChartDemo4
              • org.jfree.chart.demo.LineChartDemo5
              • org.jfree.chart.demo.LineChartDemo6
              • org.jfree.chart.demo.MarkerDemo1
              • org.jfree.chart.demo.MinMaxCategoryPlotDemo
              • org.jfree.chart.demo.MouseZoomDemo
              • org.jfree.chart.demo.MovingAverageDemo
              • org.jfree.chart.demo.MultipleAxisDemo1
              • org.jfree.chart.demo.MultipleAxisDemo2
              • org.jfree.chart.demo.MultipleAxisDemo3
              • org.jfree.chart.demo.MultipleDatasetDemo1 (implements java.awt.event.ActionListener)
              • org.jfree.chart.demo.MultiplePieChartDemo1
              • org.jfree.chart.demo.MultiplePieChartDemo2
              • org.jfree.chart.demo.MultiplePieChartDemo3
              • org.jfree.chart.demo.MultiplePieChartDemo4
              • org.jfree.chart.demo.MultiShapesXYDemo
              • org.jfree.chart.demo.NormalDistributionDemo
              • org.jfree.chart.demo.OverlaidBarChartDemo
              • org.jfree.chart.demo.OverlaidBarChartDemo2
              • org.jfree.chart.demo.OverlaidXYPlotDemo
              • org.jfree.chart.demo.OverlaidXYPlotDemo2
              • org.jfree.chart.demo.ParetoChartDemo
              • org.jfree.chart.demo.PieChart3DDemo1
              • org.jfree.chart.demo.PieChart3DDemo2
              • org.jfree.chart.demo.PieChart3DDemo3
              • org.jfree.chart.demo.PieChart3DDemo4
              • org.jfree.chart.demo.PieChartDemo1
              • org.jfree.chart.demo.PieChartDemo2
              • org.jfree.chart.demo.PieChartDemo3
              • org.jfree.chart.demo.PieChartDemo4
              • org.jfree.chart.demo.PieChartDemo5
              • org.jfree.chart.demo.PieChartDemo6
              • org.jfree.chart.demo.PieChartDemo7
              • org.jfree.chart.demo.PlotOrientationDemo
              • org.jfree.chart.demo.PlotOrientationDemo2
              • org.jfree.chart.demo.PolarChartDemo
              • org.jfree.chart.demo.PopulationChartDemo
              • org.jfree.chart.demo.PriceVolumeDemo
              • org.jfree.chart.demo.ScatterPlotDemo
              • org.jfree.chart.demo.ScatterPlotDemo2
              • org.jfree.chart.demo.ScatterPlotDemo3 (implements org.jfree.chart.ChartMouseListener)
              • org.jfree.chart.demo.ScatterPlotDemo4
              • org.jfree.chart.demo.SecondaryDatasetDemo2 (implements java.awt.event.ActionListener)
              • org.jfree.chart.demo.SegmentedHighLowChartDemo
              • org.jfree.chart.demo.SerializationTest1 (implements java.awt.event.ActionListener)
              • org.jfree.chart.demo.SmallNumberDemo
              • org.jfree.chart.demo.StackedAreaChartDemo
              • org.jfree.chart.demo.StackedBarChart3DDemo
              • org.jfree.chart.demo.StackedBarChartDemo1
              • org.jfree.chart.demo.StackedBarChartDemo2
              • org.jfree.chart.demo.StackedBarChartDemo3
              • org.jfree.chart.demo.StackedBarChartDemo4
              • org.jfree.chart.demo.StackedXYAreaChartDemo
              • org.jfree.chart.demo.StackedXYAreaChartDemo2
              • org.jfree.chart.demo.StatisticalBarChartDemo
              • org.jfree.chart.demo.SurveyResultsDemo
              • org.jfree.chart.demo.SurveyResultsDemo2
              • org.jfree.chart.demo.SurveyResultsDemo3
              • org.jfree.chart.demo.SymbolicChartDemo1
              • org.jfree.chart.demo.ThermometerDemo2
              • org.jfree.chart.demo.TimePeriodValuesDemo
              • org.jfree.chart.demo.TimePeriodValuesDemo2
              • org.jfree.chart.demo.TimePeriodValuesDemo3
              • org.jfree.chart.demo.TimeSeriesDemo
              • org.jfree.chart.demo.TimeSeriesDemo10
              • org.jfree.chart.demo.TimeSeriesDemo11
              • org.jfree.chart.demo.TimeSeriesDemo12
              • org.jfree.chart.demo.TimeSeriesDemo13
              • org.jfree.chart.demo.TimeSeriesDemo2
              • org.jfree.chart.demo.TimeSeriesDemo3
              • org.jfree.chart.demo.TimeSeriesDemo4
              • org.jfree.chart.demo.TimeSeriesDemo5
              • org.jfree.chart.demo.TimeSeriesDemo6
              • org.jfree.chart.demo.TimeSeriesDemo7
              • org.jfree.chart.demo.TimeSeriesDemo8
              • org.jfree.chart.demo.TimeSeriesDemo9
              • org.jfree.chart.demo.WaferMapChartDemo
              • org.jfree.chart.demo.WaterfallChartDemo
              • org.jfree.chart.demo.WaterfallChartDemo2
              • org.jfree.chart.demo.WaterTemperatureDemo
              • org.jfree.chart.demo.WindChartDemo
              • org.jfree.chart.demo.XMLBarChartDemo
              • org.jfree.chart.demo.XMLPieChartDemo
              • org.jfree.chart.demo.XYAreaChartDemo
              • org.jfree.chart.demo.XYAreaChartDemo2
              • org.jfree.chart.demo.XYAreaChartTest
              • org.jfree.chart.demo.XYBarChartDemo
              • org.jfree.chart.demo.XYBarChartDemo2
              • org.jfree.chart.demo.XYBarChartDemo3
              • org.jfree.chart.demo.XYBarChartDemo4
              • org.jfree.chart.demo.XYBoxAndWhiskerDemo
              • org.jfree.chart.demo.XYLineAndShapeRendererDemo
              • org.jfree.chart.demo.XYLogAxesDemo
              • org.jfree.chart.demo.XYSeriesDemo
              • org.jfree.chart.demo.XYSeriesDemo2
              • org.jfree.chart.demo.XYSeriesDemo3
              • org.jfree.chart.demo.XYStepAreaChartDemo (implements java.awt.event.ActionListener)
              • org.jfree.chart.demo.XYTickLabelDemo (implements java.awt.event.ActionListener)
              • org.jfree.chart.demo.YIntervalChartDemo
            • org.jfree.chart.ChartFrame
            • placement.DebugFrame
            • org.graffiti.editor.GraffitiFrame
            • org.jfree.chart.demo.JFreeChartDemo (implements java.awt.event.ActionListener, java.awt.event.WindowListener)
            • org.graffiti.editor.MainFrame (implements java.awt.dnd.DropTargetListener, org.graffiti.managers.IOManager.IOManagerListener, org.graffiti.managers.pluginmgr.PluginManagerListener, org.graffiti.selection.SelectionListener, org.graffiti.session.SessionListener, org.graffiti.session.SessionManager, javax.swing.event.UndoableEditListener, org.graffiti.managers.ViewManager.ViewManagerListener)
            • org.jfree.chart.demo.PanScrollZoomDemo (implements java.awt.event.ActionListener, javax.swing.event.ChangeListener, org.jfree.chart.event.ChartChangeListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
            • placement.RectangleDrawerFrame
            • org.graffiti.editor.SplashScreen (implements org.graffiti.editor.SplashScreenInterface)
  • org.vanted.scaling.ComponentRegulator
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.CompositeIcon (implements javax.swing.Icon, javax.swing.SwingConstants)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition (implements de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.ConstantsName
  • placement.Constraint (implements java.lang.Comparable<T>)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.ContextMenuHelper (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.ContextMenuManager (implements de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.IContextMenuManager)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.DefaultContextMenuManager
  • org.jfree.chart.plot.ContourPlotUtilities
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.exact_fisher_test.ContTable
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.CorrelationResult
  • org.jfree.chart.plot.CrosshairState
  • qmwi.kseg.som.CSV_SOM_dataEntry (implements qmwi.kseg.som.SOMdataEntry)
  • qmwi.kseg.som.CSVreader
  • org.jfree.chart.urls.CustomPieURLGenerator (implements java.lang.Cloneable, org.jfree.chart.urls.PieURLGenerator, org.jfree.util.PublicCloneable, java.io.Serializable)
  • org.jfree.chart.labels.CustomXYToolTipGenerator (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable, org.jfree.chart.labels.XYToolTipGenerator)
  • org.jfree.chart.urls.CustomXYURLGenerator (implements java.io.Serializable, org.jfree.chart.urls.XYURLGenerator)
  • org.graffiti.graphics.Dash
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.genophen.DataBase2GUI
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_dbe.DatabaseFileStatusService (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DataColumnHeader
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingId (implements java.lang.Comparable<T>)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingTypeManager (implements de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingTypeManagerInterface)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DataRowExcelExport (implements java.lang.Comparable<T>, java.util.Comparator<T>)
  • qmwi.kseg.som.DataSet
  • org.jfree.data.DatasetGroup (implements java.lang.Cloneable, java.io.Serializable)
  • org.jfree.data.xml.DatasetReader
  • org.jfree.chart.plot.DatasetRenderingOrder (implements java.io.Serializable)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetTable
  • org.jfree.data.DatasetUtilities
  • org.jfree.data.DataUtilities
  • org.jfree.chart.axis.DateTickMarkPosition (implements java.io.Serializable)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.DBEattribute
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.helper.DBEgravistoHelper (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.DBEsplashScreen (implements org.graffiti.editor.SplashScreenInterface)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_editing.DBGETresult
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.DebugSelectionCheck (implements java.awt.event.ActionListener)
  • org.graffiti.managers.DefaultAlgorithmManager (implements org.graffiti.managers.AlgorithmManager)
  • org.graffiti.plugin.algorithm.DefaultAlgorithmResult (implements org.graffiti.plugin.algorithm.AlgorithmResult)
  • org.jfree.chart.plot.DefaultDrawingSupplier (implements java.lang.Cloneable, org.jfree.chart.plot.DrawingSupplier, org.jfree.util.PublicCloneable, java.io.Serializable)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyDefaultShapeDrawingSupplier (implements org.jfree.chart.plot.DrawingSupplier)
  • org.xml.sax.helpers.DefaultHandler (implements org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler)
    • org.jfree.data.xml.CategorySeriesHandler (implements org.jfree.data.xml.DatasetTags)
    • org.jfree.data.xml.ItemHandler (implements org.jfree.data.xml.DatasetTags)
    • org.jfree.data.xml.KeyHandler (implements org.jfree.data.xml.DatasetTags)
    • org.jfree.data.xml.RootHandler (implements org.jfree.data.xml.DatasetTags)
      • org.jfree.data.xml.CategoryDatasetHandler (implements org.jfree.data.xml.DatasetTags)
      • org.jfree.data.xml.PieDatasetHandler (implements org.jfree.data.xml.DatasetTags)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xlsx.SheetHandler
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathXMLparser
    • org.jfree.data.xml.ValueHandler (implements org.jfree.data.xml.DatasetTags)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLDelegatorHandler
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLHandler
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLContentHandler
  • org.graffiti.managers.DefaultIOManager (implements org.graffiti.managers.IOManager)
  • org.jfree.data.DefaultKeyedValue (implements java.lang.Cloneable, org.jfree.data.KeyedValue, java.io.Serializable)
  • org.jfree.data.DefaultKeyedValues (implements java.lang.Cloneable, org.jfree.data.KeyedValues, java.io.Serializable)
  • org.jfree.data.DefaultKeyedValues2D (implements java.lang.Cloneable, org.jfree.data.KeyedValues2D, java.io.Serializable)
  • org.graffiti.managers.DefaultModeManager (implements org.graffiti.managers.ModeManager)
  • javax.swing.tree.DefaultMutableTreeNode (implements java.lang.Cloneable, javax.swing.tree.MutableTreeNode, java.io.Serializable)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings.MyPluginTreeNode
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkTreeNode
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.DefaultPageable (implements java.awt.print.Pageable)
  • org.graffiti.managers.pluginmgr.DefaultPluginEntry (implements org.graffiti.managers.pluginmgr.PluginEntry)
  • org.graffiti.managers.pluginmgr.DefaultPluginManager (implements org.graffiti.managers.pluginmgr.PluginManager)
  • org.jfree.chart.DefaultShapeFactory (implements org.jfree.chart.ShapeFactory)
  • org.graffiti.managers.DefaultToolManager (implements org.graffiti.managers.ToolManager)
  • javax.swing.tree.DefaultTreeSelectionModel (implements java.lang.Cloneable, java.io.Serializable, javax.swing.tree.TreeSelectionModel)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.CheckTreeSelectionModel
  • org.graffiti.managers.DefaultURLattributeActionManager (implements org.graffiti.managers.URLattributeActionManager)
  • org.graffiti.managers.DefaultViewManager (implements org.graffiti.managers.ViewManager)
  • org.jfree.chart.demo.DemoDatasetFactory
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe.DesEncrypter
  • qmwi.kseg.som.diagram.DiagrammData
  • org.jfree.chart.plot.DialShape (implements java.io.Serializable)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.DirkDemo
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.DistanceInfo
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DistanceMatrix
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.DOMEcho
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.DoubleAndSourceList
  • org.vanted.scaling.DPIHelper
  • org.jfree.chart.DrawableLegendItem
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.DrawingGroup
  • org.jfree.chart.imagemap.DynamicDriveToolTipTagFragmentGenerator (implements org.jfree.chart.imagemap.ToolTipTagFragmentGenerator)
  • org.graffiti.event.EdgeAdapter (implements org.graffiti.event.EdgeListener)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.viewcomponents.EdgeComponentHelper (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.EdgeHelper (implements org.HelperClass)
  • org.graffiti.managers.EditComponentManager (implements org.graffiti.managers.pluginmgr.PluginManagerListener)
  • javax.swing.text.EditorKit (implements java.lang.Cloneable, java.io.Serializable)
    • javax.swing.text.DefaultEditorKit
      • javax.swing.text.StyledEditorKit
        • javax.swing.text.html.HTMLEditorKit (implements javax.accessibility.Accessible)
          • de.ipk_gatersleben.ag_nw.graffiti.services.PatchedHTMLEditorKit
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Entry
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzClassEntry
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeEntry
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeService (implements org.BackgroundTaskStatusProvider, de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.FileDownloadStatusInformationProvider, org.HelperClass, org.graffiti.editor.MemoryHog)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.special.EnzymeStatisticInformation
  • org.ErrorMsg (implements org.HelperClass)
  • java.util.EventObject (implements java.io.Serializable)
    • org.graffiti.event.AbstractEvent
      • org.graffiti.event.AttributeEvent
      • org.graffiti.event.EdgeEvent
      • org.graffiti.event.GraphEvent
      • org.graffiti.event.NodeEvent
      • org.graffiti.selection.SelectionEvent
      • org.graffiti.event.TransactionEvent
    • org.jfree.chart.event.ChartChangeEvent
      • org.jfree.chart.event.AxisChangeEvent
      • org.jfree.chart.event.LegendChangeEvent
      • org.jfree.chart.event.PlotChangeEvent
      • org.jfree.chart.event.RendererChangeEvent
      • org.jfree.chart.event.TitleChangeEvent
    • org.jfree.chart.event.ChartProgressEvent
    • org.jfree.data.DatasetChangeEvent
    • net.iharder.dnd.FileDropEvent
    • org.jfree.data.SeriesChangeEvent (implements java.io.Serializable)
  • java.awt.EventQueue
    • org.graffiti.editor.GlobalHotkeyManager
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment (implements de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.Experiment2GraphHelper (implements org.BackgroundTaskStatusProviderSupportingExternalCall, org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentConstructor
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentData
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotationManager
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataFileReader (implements org.BackgroundTaskStatusProvider)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DBEinputFileReader
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.GeneExpressionFileReader
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataFileWriter
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataProcessingManager
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader (implements de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentLoader
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.FileDownloadCache
  • net.iharder.dnd.FileDrop
  • net.iharder.dnd.FileDropBean (implements java.io.Serializable)
  • javax.swing.filechooser.FileFilter
    • org.graffiti.core.GenericFileFilter
      • org.graffiti.managers.GravistoFileFilter
    • org.graffiti.managers.pluginmgr.PluginFileFilter
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.FileHandlerUserDecision
  • org.graffiti.editor.actions.FileHandlingManager
  • de.ipk_gatersleben.ag_nw.graffiti.FileHelper (implements org.HelperClass)
  • org.graffiti.plugin.io.resources.FileSystemIOConfig (implements org.graffiti.plugin.io.resources.ResourceIOConfigObject)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.FinalBoolean
  • org.jfree.chart.demo.First
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.exact_fisher_test.FisherProbability
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.FloatAndDesc
  • java.awt.FlowLayout (implements java.awt.LayoutManager, java.io.Serializable)
    • org.graffiti.util.ToolBarLayout
  • java.awt.Font (implements java.io.Serializable)
    • javax.swing.plaf.FontUIResource (implements javax.swing.plaf.UIResource)
      • org.vanted.scaling.resources.ScaledFontUIResource
  • java.text.Format (implements java.lang.Cloneable, java.io.Serializable)
    • java.text.NumberFormat
      • org.jfree.chart.axis.CompassFormat
  • java.util.logging.Formatter
    • org.graffiti.util.logging.SimpleFormatter
  • org.graffiti.editor.GaussFilter
  • org.graffiti.util.GeneralEditorUtils
  • org.graffiti.util.GeneralUtils (implements org.HelperClass)
  • org.graffiti.core.GenericBundle
    • org.graffiti.core.ImageBundle
    • org.graffiti.core.StringBundle
  • org.graffiti.plugin.GenericPluginAdapter (implements org.graffiti.plugin.GenericPlugin)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph.ApplyGraphLayoutPlugin
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.connected_components.ConnectedComponentPlugin
    • de.ipk_gatersleben.ag_nw.graffiti.DBE_PluginAdapter
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.DBEplugin (implements org.graffiti.plugin.EditorPlugin)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color.SetBackgroundColorPlugin
    • org.graffiti.plugins.ios.exporters.graphviz.DOTSerializerPlugin
    • org.vanted.plugins.layout.adaptagrams.edgerouting.EdgeRoutingPlugin
    • org.graffiti.plugin.EditorPluginAdapter (implements org.graffiti.plugin.EditorPlugin)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsDBAccessPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.DBE_EditorPluginAdapter
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKDefaultView
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.PatternTabsForClusterAnalysis
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.PatternTabsForInspector
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_dbe.PluginInfoMenu
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_example.PluginInfoMenu
      • org.graffiti.plugins.modes.defaultEditMode.DefaultEditModePlugin
      • org.graffiti.plugins.views.defaults.DefaultView
      • org.graffiti.plugins.editcomponents.defaults.GraffitiValueEditComponents
      • org.graffiti.plugins.inspectors.defaults.Inspector (implements org.graffiti.plugin.inspector.InspectorPlugin, org.graffiti.plugin.editcomponent.NeedEditComponents, org.graffiti.selection.SelectionListener, org.graffiti.session.SessionListener, org.graffiti.plugin.view.ViewListener)
      • de.ipk_gatersleben.ag_nw.graffiti.IPK_EditorPluginAdapter
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.AddonAdapter
          • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_XML_ReaderWriterPlugin
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.AddonManagerPlugin (implements de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.DragAndDropHandler)
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastViewPlugin
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.InvertSelectionPlugin
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.IPK_StandardTools (implements org.graffiti.session.SessionListener, org.graffiti.plugin.view.ViewListener)
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.enhanced_attribute_editors.IPKeditComponents (implements org.graffiti.managers.pluginmgr.PluginManagerListener)
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.KeggToolbarPlugin
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.ReferencesPlugin
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.zoomfit.ZoomFitPlugin
      • org.graffiti.plugins.views.matrix.MatrixViewPlugin
      • org.graffiti.plugins.attributecomponents.simplelabel.StandardAttributeComponents
      • org.graffiti.plugins.modes.defaults.StandardTools
      • org.vanted.plugins.layout.stressminimization.StressMinimizationPlugin
      • org.graffiti.plugins.guis.switchselections.SwitchSelectionsPlugin (implements org.graffiti.selection.SelectionListener)
      • org.graffiti.plugins.tools.enhancedzoomtool.ZoomPlugin
      • org.graffiti.plugins.tools.zoomtool.ZoomPlugin
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fish_eye.FishEyeLayoutPlugin
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fd_edge_routing.ForceDirectedEdgeLayoutPlugin
    • org.graffiti.plugins.ios.importers.gml.GMLReaderPlugin
    • org.graffiti.plugins.ios.exporters.gml.GMLSerializerPlugin
    • org.graffiti.plugins.ios.exporters.gmlxml.GMLXMLSerializerPlugin
    • org.graffiti.plugins.attributes.defaults.GraffitiAttributesPlugin
    • org.graffiti.plugins.ios.importers.graphml.GraphMLReaderPlugin
    • org.graffiti.plugins.ios.exporters.graphml.GraphMLWriterPlugin
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.tree_simple.GraphTreeLayoutPlugin
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.HammingDistancePlugin
    • de.ipk_gatersleben.ag_nw.graffiti.IPK_PluginAdapter
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.AlternativeIdentifiersPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.AttributeAndDataMappingEvaluation
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.scripting.BeanShellDesktopPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.BioPAX_OWL_ReaderPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.biopax.BioPAX_OWL_WriterPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.graph_to_origin_mover.CenterLayouterPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartAttributePlugin (implements org.graffiti.plugin.EditorPlugin)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartAttributePlugin (implements org.graffiti.plugin.EditorPlugin)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.CircleLayouterPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttributePlugin (implements org.graffiti.plugin.EditorPlugin)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundImageAttributePlugin (implements org.graffiti.plugin.EditorPlugin)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.DavidTestPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup.DeleteNodesPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_reduce_space.ExpandReduceLayouterPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttributePlugin (implements org.graffiti.plugin.EditorPlugin)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.GraphGenerationPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid.GridLayouterPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement.GridPlacementPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.inverse_graph.InverseGraphPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kegg_xml.KEGG_XML_ReaderPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggAttributePlugin (implements org.graffiti.plugin.EditorPlugin)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment.LabelAlignmentAttributePlugin (implements org.graffiti.plugin.EditorPlugin)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_color.LabelColorAttributePlugin (implements org.graffiti.plugin.EditorPlugin)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings.LabelFontAttributePlugin (implements org.graffiti.plugin.EditorPlugin)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style.LabelStyleAttributePlugin (implements org.graffiti.plugin.EditorPlugin)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.lines_as_substances.LinesSubstancesPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.link_visualization_legend.LinkVisualizationLegendPlugin (implements org.graffiti.plugin.algorithm.ProvidesGeneralContextMenu, org.graffiti.session.SessionListener)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.metatool.MetatoolIOPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.pajek.PajekReaderPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.copy_pattern_layout.PluginCopyPatternLayout
      • vanted_feature.PluginFeatureClusterCommands
      • vanted_feature.PluginFeatureDataMapping
      • vanted_feature.PluginFeatureExtendedFileFormatSupport
      • vanted_feature.PluginFeatureHierarchyCommands
      • vanted_feature.PluginFeatureMacroRecording
      • vanted_feature.PluginFeatureMetaCropAccess
      • vanted_feature.PluginFeatureNetworkAnalysisCommands
      • vanted_feature.PluginFeatureStatistics
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PluginPatternSpringembedder
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache.PluginPatternSpringembedderNoCache
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.RatioViewPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.ReplaceLabelPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.ResizeAndGridLayoutPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_XML_ReaderPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_XML_WriterPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMplugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.startlayout.StartLayoutPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SVGPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list.TextListReaderPlugin
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.url_attribute_context_commands.URLattributeContextMenuCommandPlugin (implements org.graffiti.plugin.algorithm.ProvidesDirectMouseClickContextMenu)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttributePlugin (implements org.graffiti.plugin.EditorPlugin)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttributePlugin (implements org.graffiti.plugin.EditorPlugin)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kgml.KEGG_XML_ReaderPlugin
    • org.vanted.plugins.layout.multilevelframework.MultilevelFrameworkPlugin
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.NaivePatternFinderPlugin
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_no_overlapp.NoOverlappLayouterPlugin
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.no_overlapp_as_tim.NoOverlappLayouterPlugin
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.petri_ina_pnt.PNTSerializerPlugin
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.printer.PrintPlugin
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.radial_tree.RadialTreeLayoutPlugin
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.random.RandomLayouterPlugin
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate.RotatePlugin
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.RTTreeLayoutPlugin
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.springembedder_1.SpringEmbedderPlugin
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLReaderPlugin
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.xwg_wilma.XWGSerializerPlugin
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayErrorInformation
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayWarningInformation
  • org.graffiti.plugins.ios.exporters.gml.GMLWriter (implements org.graffiti.plugin.io.OutputSerializer, org.graffiti.plugin.io.SupportsWriterOutput)
    • org.graffiti.plugins.ios.exporters.gml.GMLgzWriter
  • org.graffiti.plugins.ios.exporters.gmlxml.GMLXMLWriter (implements org.graffiti.plugin.io.OutputSerializer)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.GOinformation
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.GoProcessing
  • org.graffiti.editor.GraffitiButtonGroup
  • org.graffiti.editor.GraffitiEditor
  • placement.Graph
  • org.graffiti.event.GraphAdapter (implements org.graffiti.event.GraphListener)
  • org.graffiti.session.GraphConstraintChecker (implements org.graffiti.event.AttributeListener, org.graffiti.event.EdgeListener, org.graffiti.event.GraphListener, org.graffiti.event.NodeListener, org.graffiti.event.TransactionListener)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.GraphElementHelper (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.GraphHelper (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.GraphHelperBio (implements org.HelperClass)
  • org.graffiti.util.GraphicHelper (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Graphics
  • org.graffiti.plugins.ios.importers.graphml.parser.GraphMLEntityResolver (implements org.xml.sax.EntityResolver)
  • org.graffiti.plugins.ios.importers.graphml.parser.GraphMLParser
  • placement.GraphParser
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.GravistoMainHelper (implements org.HelperClass)
  • org.graffiti.options.GravistoPreferences
  • org.graffiti.editor.GravistoService (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement.Grid
  • de.ipk_gatersleben.ag_nw.graffiti.services.GUIhelper
  • org.GuiRow
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.HammingCalculator (implements org.BackgroundTaskStatusProvider, java.lang.Runnable)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.HeatMapOptions
  • org.graffiti.help.HelpContext
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.HelperClass
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.biopax.BioPAX_OWL_Writer (implements org.graffiti.plugin.io.OutputSerializer)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.BPinteraction
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.BPbiochemicalReaction
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.BPcatalysis
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.BPcomplexAssembly
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.BPcontrol
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.BPconversion
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.BPmodulation
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.BPphysicalInteraction
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.BPtransport
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.BPtransportWithBiochemicalReaction
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPInteraction
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPBiochemicalReaction
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPCatalysis
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPComplexAssembly
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPControl
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPConversion
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPDegradation
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPGeneticInteraction
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPModulation
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPMolecularInteraction
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPTemplateReaction
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPTemplateReactionRegulation
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPTransport
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPTransportWithBiochemicalReaction
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.PathWayHandler
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.PathWayHandler
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.PathWayLoaderLvL2
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.PathWayLoaderLvL3
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.StoichiometryWriter
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility.StoichiometryWriter
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UtilityClassSelectorFromGraph
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UtilitySuperClassFromGraph
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UtilitySuperClassToGraph
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UBioChemicalReaction
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UCatalysis
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UComplex
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UComplexAssembly
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UControl
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UConversion
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UDegradation
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UDna
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UDnaRegion
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UGene
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UGeneticInteraction
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UModulation
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UMolecularInteraction
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UPathway
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UPhysicalEntity
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UProtein
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.URna
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.URnaRegion
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.USmallMolecule
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UTemplateReaction
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UTemplateReactionRegulation
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UTransport
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UTransportWithBiochemicalReaction
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility.UtilitySuperClassToGraph
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility.UbioChemicalReaction
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility.Ucatalysis
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility.Ucomplex
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility.UcomplexAssembly
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility.Ucontrol
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility.Uconversion
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility.Udna
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility.Umodulation
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility.Upathway
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility.UphysicalEntity
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility.UphysicalInteraction
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility.Uprotein
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility.Urna
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility.UsmallMolecule
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility.Utransport
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility.UtransportWithBiochemicalReaction
  • org.vanted.scaling.vanted.HighDPISupport (implements org.graffiti.options.PreferencesInterface)
  • org.jfree.chart.renderer.HighLow
  • org.jfree.chart.labels.HighLowItemLabelGenerator (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable, org.jfree.chart.labels.XYLabelGenerator, org.jfree.chart.labels.XYToolTipGenerator)
  • org.jfree.data.statistics.HistogramBin (implements java.lang.Cloneable, java.io.Serializable)
  • org.jfree.data.statistics.HistogramType (implements java.io.Serializable)
  • org.HomeFolder (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.genophen.HTMLErrorMsg
  • org.vanted.scaling.scalers.component.HTMLScaleSupport
  • org.vanted.updater.HttpHttpsURL
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.Id
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.IdRef
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.IdAndGraphNode
  • org.jfree.chart.demo.ImageMapDemo1
  • org.jfree.chart.demo.ImageMapDemo2
  • org.jfree.chart.demo.ImageMapDemo3
  • org.jfree.chart.demo.ImageMapDemo4
  • org.jfree.chart.demo.ImageMapDemo5
  • org.jfree.chart.demo.ImageMapDemo6
  • org.jfree.chart.demo.ImageMapDemo7
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.IndexAndString
  • org.vanted.indexednodes.IndexedComponent
  • org.vanted.indexednodes.IndexedGraphOperations
  • org.vanted.indexednodes.IndexedNodeSet (implements java.lang.Iterable<T>)
  • java.io.InputStream (implements java.io.Closeable)
    • java.io.ByteArrayInputStream
      • org.graffiti.plugin.io.resources.MyByteArrayInputStream
    • java.io.FilterInputStream
      • org.graffiti.plugins.ios.exporters.graphml.Base64.InputStream
      • org.graffiti.plugins.ios.importers.graphml.parser.Base64.InputStream
  • org.graffiti.util.InstanceLoader
  • javax.swing.event.InternalFrameAdapter (implements javax.swing.event.InternalFrameListener)
    • org.graffiti.util.MaximizeManager (implements java.awt.event.ActionListener, java.awt.event.ComponentListener, java.awt.event.ContainerListener)
  • org.vanted.animation.interpolators.Interpolator
    • org.vanted.animation.interpolators.BezierInterpolator
    • org.vanted.animation.interpolators.CosineInterpolator
    • org.vanted.animation.interpolators.CubicInterpolator
    • org.vanted.animation.interpolators.LinearInterpolator
    • org.vanted.animation.interpolators.SigmoidInterpolator
    • org.vanted.animation.interpolators.SineInterpolator
    • org.vanted.animation.interpolators.SmoothCubicInterpolator
  • org.jfree.chart.demo.IntervalBarChartDemo1
  • org.graffiti.plugin.io.resources.IOurl
  • org.jfree.chart.labels.ItemLabelAnchor (implements java.io.Serializable)
  • org.jfree.chart.labels.ItemLabelPosition (implements java.io.Serializable)
  • org.Java_1_5_compatibility
  • org.Java_1_5_compatibility_impl
  • org.graffiti.plugin.editcomponent.JComponentParameterEditor (implements org.graffiti.plugin.editcomponent.ValueEditComponent)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.JDOM2DOM
  • org.jfree.chart.JFreeChart (implements java.lang.Cloneable, org.jfree.ui.Drawable, org.jfree.chart.event.LegendChangeListener, org.jfree.chart.event.PlotChangeListener, java.io.Serializable, org.jfree.chart.event.TitleChangeListener)
  • org.jfree.chart.demo.JFreeChartDemoBase
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kegg_xml.KEGG2_XML_Writer (implements org.graffiti.plugin.io.OutputSerializer)
  • org.vanted.KeggAccess
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggAPIService
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggAPIServiceHelper (implements de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.FileDownloadStatusInformationProvider, org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggBriteService
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionConverter
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionDatapoint
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionDataset
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionReader
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggHelper (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.KeggId
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggPathwayEntry (implements java.lang.Comparable<T>)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggService (implements org.BackgroundTaskStatusProvider, org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.KeggSoapAndPathwayService (implements org.BackgroundTaskStatusProvider, org.HelperClass, java.lang.Runnable)
  • org.jfree.data.KeyedObject (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable)
  • org.jfree.data.KeyedObjects (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable)
  • org.jfree.data.KeyedObjects2D (implements java.lang.Cloneable, java.io.Serializable)
  • org.jfree.data.KeyedValueComparator (implements java.util.Comparator<T>)
  • org.jfree.data.KeyedValueComparatorType
  • org.jfree.data.KeyToGroupMap (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.kgmlColor
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.KgmlEdMain
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KGMLhelper
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.kgmlNumber
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KoEntry (implements java.lang.Comparable<T>)
  • org.vanted.plugins.layout.multilevelframework.LayoutAlgorithmWrapper
  • org.jfree.chart.Legend (implements java.lang.Cloneable, java.io.Serializable)
    • org.jfree.chart.StandardLegend (implements java.io.Serializable)
      • org.jfree.chart.MeterLegend
  • org.jfree.chart.LegendItem (implements java.io.Serializable)
  • org.jfree.chart.LegendItemCollection
  • org.jfree.chart.LegendRenderingOrder (implements java.io.Serializable)
  • org.graffiti.plugins.views.defaults.LineEdgeShape (implements org.graffiti.plugin.view.EdgeShape)
    • org.graffiti.plugins.views.defaults.PolyLineEdgeShape
      • org.graffiti.plugins.views.defaults.QuadCurveEdgeShape
        • org.graffiti.plugins.views.defaults.SmoothLineEdgeShape
    • org.graffiti.plugins.views.defaults.StraightLineEdgeShape
  • org.jfree.data.LineFunction2D (implements org.jfree.data.Function2D)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.LineModeCellRenderer (implements javax.swing.ListCellRenderer<E>)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.LineModeSetting
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.ListBiomodelsCellRenderer (implements javax.swing.ListCellRenderer<E>)
  • org.graffiti.event.ListenerManager
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.LoadGraphFileAttributeAction (implements org.graffiti.plugin.actions.URLattributeAction)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.LoadURLattributeAction (implements org.graffiti.plugin.actions.URLattributeAction)
  • org.vanted.LookAndFeelNameAndClass
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.LookAndFeelWrapper
  • org.vanted.animation.loopers.Looper
    • org.vanted.animation.loopers.ForwardLooper
    • org.vanted.animation.loopers.StandardLooper
    • org.vanted.animation.loopers.SwingLooper
  • java_cup.runtime.lr_parser
    • org.graffiti.plugins.ios.importers.gml.parser
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.LVL2ModelConverter
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.LVL3ModelConverter
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.MAGEprocessor
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.Main
  • qmwi.kseg.som.Map
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.MapNumber
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.MapOrg
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.MapResult
  • org.jfree.chart.plot.Marker (implements java.lang.Cloneable, java.io.Serializable)
    • org.jfree.chart.plot.IntervalMarker (implements java.lang.Cloneable, java.io.Serializable)
    • org.jfree.chart.plot.ValueMarker
  • org.jfree.chart.axis.MarkerAxisBand (implements java.io.Serializable)
  • org.graffiti.util.MaximizeLayout (implements java.awt.LayoutManager)
  • placement.MaxPairingHeap<T> (implements placement.MaxPriorityQueue<T>)
  • org.jfree.data.MeanAndStandardDeviation
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.BioMeanAndStandardDeviation
    • org.BioMeanAndStandardDeviation
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MemPlant
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MemSample
  • org.graffiti.util.MenuAdapter (implements javax.swing.event.MenuListener)
    • org.graffiti.util.DesktopMenuManager (implements org.graffiti.session.SessionListener)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.MergeSort
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.Messages
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.metatool.MetatoolWriter (implements org.graffiti.plugin.io.OutputSerializer)
  • org.jfree.chart.demo.MeterChartDemo
  • org.jfree.chart.demo.MeterChartDemo2
  • org.jfree.chart.needle.MeterNeedle (implements java.io.Serializable)
    • org.jfree.chart.needle.ArrowNeedle (implements java.io.Serializable)
      • org.jfree.chart.needle.WindNeedle (implements java.io.Serializable)
    • org.jfree.chart.needle.LineNeedle (implements java.io.Serializable)
    • org.jfree.chart.needle.LongNeedle (implements java.io.Serializable)
    • org.jfree.chart.needle.PinNeedle (implements java.io.Serializable)
    • org.jfree.chart.needle.PlumNeedle (implements java.io.Serializable)
    • org.jfree.chart.needle.PointerNeedle
    • org.jfree.chart.needle.ShipNeedle (implements java.io.Serializable)
  • placement.MinPairingHeap<T>
  • org.vanted.plugins.layout.multilevelframework.MLFParamModel
  • java.awt.event.MouseAdapter (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.CheckTreeManager (implements javax.swing.event.TreeSelectionListener)
    • javax.swing.event.MouseInputAdapter (implements javax.swing.event.MouseInputListener)
      • org.graffiti.plugin.tool.AbstractTool (implements org.graffiti.selection.SelectionListener, org.graffiti.session.SessionListener, org.graffiti.plugin.tool.Tool)
        • org.graffiti.plugin.tool.AbstractUndoableTool (implements org.graffiti.undo.Undoable)
          • org.graffiti.plugins.modes.defaults.MegaTools
            • org.graffiti.plugins.modes.defaults.AdvancedLabelTool
              • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.IPK_AdvancedLabelTool
            • org.graffiti.plugins.modes.defaults.LabelTool
            • org.graffiti.plugins.modes.defaults.MegaCreateTool
              • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.IPK_MegaCreateTool (implements java.awt.event.MouseWheelListener)
            • org.graffiti.plugins.modes.defaults.MegaMoveTool (implements org.graffiti.options.PreferencesInterface)
              • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.IPK_MegaMoveTool (implements java.awt.event.MouseWheelListener)
      • de.ipk_gatersleben.ag_nw.graffiti.services.PatchedHTMLEditorKit.LinkController (implements java.io.Serializable)
  • org.jfree.data.MovingAverage
  • org.vanted.plugins.layout.multilevelframework.MultilevelGraph
  • org.graffiti.util.MultipleIterator (implements java.util.Iterator<E>)
  • org.graffiti.plugins.ios.importers.gml.MyBoolean
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.MyChartCellRenderer (implements javax.swing.ListCellRenderer<E>)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.MyClusterGraphBasedReLayoutService (implements org.BackgroundTaskStatusProviderSupportingExternalCall, org.HelperClass, java.lang.Runnable)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint (implements java.lang.Comparable<T>)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.MyComparableNode (implements java.lang.Comparable<T>)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyCorrlationFinder (implements org.BackgroundTaskStatusProvider, java.lang.Runnable)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.MyDiagramPlacementSettingCellRenderer (implements javax.swing.ListCellRenderer<E>)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyDouble
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.MyDynamicObjectListModel (implements javax.swing.ListModel<E>)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.MyEntry (implements java.util.Map.Entry<K,V>)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.MyGraphicsTools
  • de.ipk_gatersleben.ag_nw.graffiti.MyInputHelper (implements org.HelperClass)
  • org.graffiti.managers.MyInputStreamCreator
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.MyNonInteractiveSpringEmb (implements org.BackgroundTaskStatusProvider, java.lang.Runnable)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.myOp
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.MyPathWay
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.MyPathWay
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyScatterBlock
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache.MyTools
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.MyTools
  • org.NamedColorSet
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.NavigationTree
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.NewsHelper (implements org.HelperClass)
  • org.graffiti.event.NodeAdapter (implements org.graffiti.event.NodeListener)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.NodeCacheEntry
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.NodeCacheEntry3d
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.NodeCombination (implements java.lang.Comparable<T>)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper (implements org.HelperClass, org.graffiti.graph.Node)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kgml.NodePair
  • org.graffiti.plugin.algorithm.NodePosition
  • org.graffiti.plugins.editcomponents.defaults.NodeShapeCellRenderer (implements javax.swing.ListCellRenderer<E>)
  • de.ipk_gatersleben.ag_nw.graffiti.NodeTools
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.IAPnodeTools
  • org.jfree.data.NormalDistributionFunction2D (implements org.jfree.data.Function2D)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView (implements org.graffiti.plugin.view.View)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurement (implements de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurementInterface)
  • org.ObjectAttributeService (implements org.HelperClass)
  • org.ObjectRef (implements org.HelperClass)
  • org.jfree.util.ObjectTable (implements java.io.Serializable)
    • org.jfree.chart.renderer.CategoryURLGeneratorTable (implements java.io.Serializable)
  • java.util.Observable
    • placement.ActiveSetPlacement (implements placement.Placement)
    • placement.QPRectanglePlacement (implements java.util.Observer, placement.RectanglePlacement)
  • org.jfree.data.OHLCDataItem (implements java.lang.Comparable<T>)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.OpenExcelFileDialogService (implements org.HelperClass)
  • org.OpenFileDialogService (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.OpenMageFileDialogService (implements org.HelperClass)
  • org.graffiti.options.OptionGroup
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.OrganismEntry
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_organisms.OrganismInfo
  • org.vanted.osx.OSXSupport
  • org.jfree.chart.renderer.Outlier (implements java.lang.Comparable<T>)
  • org.jfree.chart.renderer.OutlierList
  • org.jfree.chart.renderer.OutlierListCollection
  • java.io.OutputStream (implements java.io.Closeable, java.io.Flushable)
    • qmwi.kseg.som.diagram.Aus
    • java.io.ByteArrayOutputStream
      • org.graffiti.plugin.io.resources.MyByteArrayOutputStream
    • java.io.FilterOutputStream
      • org.graffiti.plugins.ios.exporters.graphml.Base64.OutputStream
      • org.graffiti.plugins.ios.importers.graphml.parser.Base64.OutputStream
      • java.io.PrintStream (implements java.lang.Appendable, java.io.Closeable)
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.TeeStream
    • de.ipk_gatersleben.ag_nw.graffiti.services.MyOutputStream
  • org.jfree.chart.imagemap.OverLIBToolTipTagFragmentGenerator (implements org.jfree.chart.imagemap.ToolTipTagFragmentGenerator)
  • org.graffiti.util.Pair<T,V>
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xlsx.Parser
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.PasswordDialog
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.pathway_kegg_operation.PathwayKeggLoading
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkItem (implements java.lang.Comparable<T>)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.PatternAttributeUtils
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.helper.PatternGraffitiHelper (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.PatternVistorLayouter
  • org.jfree.chart.demo.Performance
  • org.jfree.chart.demo.Performance2
  • placement.PerformanceTest
  • placement.PFS (implements placement.RectanglePlacement)
  • org.jfree.chart.plot.PieLabelDistributor
  • org.jfree.chart.plot.PieLabelRecord (implements java.lang.Comparable<T>)
  • org.jfree.chart.plot.Plot (implements org.jfree.chart.event.AxisChangeListener, java.lang.Cloneable, org.jfree.data.DatasetChangeListener, java.io.Serializable)
    • org.jfree.chart.plot.CategoryPlot (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, org.jfree.chart.event.RendererChangeListener, java.io.Serializable, org.jfree.chart.plot.ValueAxisPlot)
      • org.jfree.chart.plot.CombinedDomainCategoryPlot (implements java.lang.Cloneable, org.jfree.chart.event.PlotChangeListener, org.jfree.util.PublicCloneable, java.io.Serializable)
      • org.jfree.chart.plot.CombinedRangeCategoryPlot (implements java.lang.Cloneable, org.jfree.chart.event.PlotChangeListener, org.jfree.util.PublicCloneable, java.io.Serializable)
    • org.jfree.chart.plot.CompassPlot (implements java.lang.Cloneable, java.io.Serializable)
    • org.jfree.chart.plot.ContourPlot (implements java.lang.Cloneable, org.jfree.chart.plot.ContourValuePlot, java.beans.PropertyChangeListener, java.io.Serializable, org.jfree.chart.plot.ValueAxisPlot)
    • org.jfree.chart.plot.FastScatterPlot (implements java.lang.Cloneable, java.io.Serializable, org.jfree.chart.plot.ValueAxisPlot)
    • org.jfree.chart.plot.MeterPlot (implements java.lang.Cloneable, java.io.Serializable)
    • org.jfree.chart.plot.MultiplePiePlot (implements java.lang.Cloneable, java.io.Serializable)
    • org.jfree.chart.plot.PiePlot (implements java.lang.Cloneable, java.io.Serializable)
      • org.jfree.chart.plot.PiePlot3D (implements java.io.Serializable)
    • org.jfree.chart.plot.PolarPlot (implements java.lang.Cloneable, org.jfree.chart.event.RendererChangeListener, java.io.Serializable, org.jfree.chart.plot.ValueAxisPlot)
    • org.jfree.chart.plot.ThermometerPlot (implements java.lang.Cloneable, java.io.Serializable, org.jfree.chart.plot.ValueAxisPlot)
    • org.jfree.chart.plot.WaferMapPlot (implements java.lang.Cloneable, org.jfree.chart.event.RendererChangeListener, java.io.Serializable)
    • org.jfree.chart.plot.XYPlot (implements java.lang.Cloneable, org.jfree.chart.event.RendererChangeListener, java.io.Serializable, org.jfree.chart.plot.ValueAxisPlot)
      • org.jfree.chart.plot.CombinedDomainXYPlot (implements java.lang.Cloneable, org.jfree.chart.event.PlotChangeListener, org.jfree.util.PublicCloneable, java.io.Serializable)
      • org.jfree.chart.plot.CombinedRangeXYPlot (implements java.lang.Cloneable, org.jfree.chart.event.PlotChangeListener, org.jfree.util.PublicCloneable, java.io.Serializable)
  • org.jfree.chart.plot.PlotOrientation (implements java.io.Serializable)
  • org.jfree.chart.plot.PlotRenderingInfo (implements java.lang.Cloneable, java.io.Serializable)
  • org.jfree.chart.plot.PlotState
  • org.graffiti.managers.pluginmgr.PluginDependency (implements org.graffiti.managers.pluginmgr.Dependency)
  • org.graffiti.managers.pluginmgr.PluginDescription
  • org.graffiti.util.PluginHelper (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_dbe.PluginInfoHelper (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings.PluginStatusInfo
  • org.graffiti.managers.pluginmgr.PluginXMLParser
  • org.graffiti.managers.pluginmgr.PluginXMLParserErrorHandler (implements org.xml.sax.ErrorHandler)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams
  • placement.PNode<S>
  • java.awt.geom.Point2D (implements java.lang.Cloneable)
    • java.awt.geom.Point2D.Double (implements java.io.Serializable)
      • org.graffiti.plugins.views.defaults.Point2Dfix
  • org.graffiti.plugins.attributecomponents.simplelabel.PointPair
  • java.security.Policy
    • org.graffiti.util.AllPermissionPolicy
  • org.graffiti.graphics.Port
  • org.graffiti.plugins.ios.importers.PortableUrlService
  • org.PositionGridGenerator
  • org.jfree.data.PowerFunction2D (implements org.jfree.data.Function2D)
  • org.graffiti.managers.PreferenceManager (implements org.graffiti.managers.pluginmgr.PluginManagerListener)
  • org.vanted.updater.PreferencesUpdater
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.PrettyObject (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.PrintEnvironment
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.PrintTool
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe.ProgressManager
  • de.ipk_gatersleben.ag_nw.graffiti.services.task.ProgressStatusService (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ProjectEntity
  • java.net.ProxySelector
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.LoggingProxy
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.QuadNumber
  • org.graffiti.util.Queue
  • org.vanted.plugins.layout.multilevelframework.RandomMerger (implements org.vanted.plugins.layout.multilevelframework.Merger)
  • org.vanted.plugins.layout.multilevelframework.RandomPlacer (implements org.vanted.plugins.layout.multilevelframework.Placer)
  • org.jfree.data.Range (implements java.io.Serializable)
    • org.jfree.data.DateRange (implements java.io.Serializable)
  • org.jfree.chart.renderer.RangeType
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Reaction
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.ReactionAndInfo
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionEntry
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.ReactionIDSpeciesIDWrapper
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionService (implements org.BackgroundTaskStatusProvider, de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.FileDownloadStatusInformationProvider, org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ReColorBars
  • org.graffiti.util.RedundantMultipleIterator (implements java.util.Iterator<E>)
  • java.lang.ref.Reference<T>
    • java.lang.ref.SoftReference<T>
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.MySoftReference<T>
  • org.jfree.data.Regression
  • org.jfree.data.time.RegularTimePeriod (implements java.lang.Comparable<T>, org.jfree.date.MonthConstants, org.jfree.data.time.TimePeriod)
    • org.jfree.data.time.Day (implements java.io.Serializable)
    • org.jfree.data.time.FixedMillisecond (implements java.io.Serializable)
    • org.jfree.data.time.Hour (implements java.io.Serializable)
    • org.jfree.data.time.Millisecond (implements java.io.Serializable)
    • org.jfree.data.time.Minute (implements java.io.Serializable)
    • org.jfree.data.time.Month (implements java.io.Serializable)
    • org.jfree.data.time.Quarter (implements java.io.Serializable)
    • org.jfree.data.time.Second (implements java.io.Serializable)
    • org.jfree.data.time.Week (implements java.io.Serializable)
    • org.jfree.data.time.Year (implements java.io.Serializable)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation
  • org.ReleaseInfo (implements org.HelperClass)
  • org.jfree.chart.renderer.RendererState
    • org.jfree.chart.renderer.CategoryItemRendererState
    • org.jfree.chart.plot.PiePlotState
    • org.jfree.chart.renderer.XYItemRendererState
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ReplicateDouble
  • java.util.ResourceBundle
    • java.util.ListResourceBundle
      • org.jfree.data.resources.DataPackageResources
      • org.jfree.data.resources.DataPackageResources_de
      • org.jfree.data.resources.DataPackageResources_es
      • org.jfree.data.resources.DataPackageResources_fr
      • org.jfree.data.resources.DataPackageResources_pl
      • org.jfree.data.resources.DataPackageResources_ru
      • org.jfree.chart.demo.resources.DemoResources
      • org.jfree.chart.demo.resources.DemoResources_de
      • org.jfree.chart.demo.resources.DemoResources_es
      • org.jfree.chart.demo.resources.DemoResources_fr
      • org.jfree.chart.demo.resources.DemoResources_pl
      • org.jfree.chart.resources.JFreeChartResources
  • org.graffiti.plugin.io.resources.ResourceIOManager
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.RestApiBiomodels
  • de.ipk_gatersleben.ag_nw.graffiti.services.web.RestService
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.ResultPair
  • org.graffiti.plugins.views.defaults.RoundGradientContext (implements java.awt.PaintContext)
  • org.adaptagrams.Router
    • org.vanted.plugins.layout.adaptagrams.edgerouting.RouterWithProgress
  • org.graffiti.managers.pluginmgr.RSSfeedDefinition
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.RSSFeedManager (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample (implements de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverage (implements de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverageInterface)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.SampleEntry
  • org.jfree.chart.demo.SampleXYDatasetThread (implements java.lang.Runnable)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_Compartment_Reader
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_FunctionDefinition_Reader
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_InitialAssignment_Reader
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Logger
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_Parameter_Reader
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_Reaction_Reader
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_Rule_Reader
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_SBase_Reader
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_Constraint_Reader
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_Event_Reader
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_Model_Reader
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_SBML_Reader
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_SBase_Writer
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_Compartment_Writer
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_Constraint_Writer
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_Event_Writer
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_FunctionDefinition_Writer
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_InitialAssignment_Writer
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_Model_Writer
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_Parameter_Writer
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_Reaction_Writer
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_Rule_Writer
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_SBML_Writer
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_Species_Writer
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_UnitDefinition_Writer
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_Species_Reader
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_UnitDefinition_Reader
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLAlgebraicRule
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLAssignmentRule
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartment
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartmentHelper
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLConstraint
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLConstraintHelper
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventAssignmentHelper
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLFunctionDefinition
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLFunctionDefinitionHelper
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLInitialAssignment
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLInitialAssignmentHelper
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLNodesNiceIdHelper
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLParameter
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLParameterHelper
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLRateRule
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.metatool.SBMLReaction
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLRuleHelper
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLUnit
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLUnitDefinition
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLUnitDefinitionHelper
  • org.vanted.scaling.resources.ScaledIcon (implements javax.swing.Icon)
  • org.vanted.scaling.ScalerLoader
  • org.vanted.scaling.ScalingCoordinator
  • org.vanted.updater.ScanForAddonUpdates
  • org.vanted.updater.ScanForUpdate (implements org.graffiti.options.PreferencesInterface)
  • placement.ScanListPriorityQueue<T> (implements placement.MaxPriorityQueue<T>)
  • scenario.Scenario
  • scenario.ScenarioService (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.services.algorithms.SearchAlgorithms
  • de.ipk_gatersleben.ag_nw.graffiti.services.algorithms.SearchAlgorithms.OperatorOnCategories
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchAttributeHelper (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption
  • org.jfree.chart.demo.Second
  • org.jfree.chart.axis.SegmentedTimeline (implements java.lang.Cloneable, java.io.Serializable, org.jfree.chart.axis.Timeline)
  • org.jfree.chart.axis.SegmentedTimeline.Segment (implements java.lang.Cloneable, java.lang.Comparable<T>, java.io.Serializable)
  • org.graffiti.selection.Selection
  • org.graffiti.selection.SelectionAdapter (implements org.graffiti.selection.SelectionListener)
  • org.graffiti.selection.SelectionModel
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.SelectResultsVisitor
  • org.jfree.data.Series (implements java.lang.Cloneable, java.io.Serializable)
    • org.jfree.data.MatrixSeries (implements java.io.Serializable)
      • org.jfree.data.NormalizedMatrixSeries
    • org.jfree.data.gantt.TaskSeries
    • org.jfree.data.time.TimePeriodValues (implements java.io.Serializable)
    • org.jfree.data.time.TimeSeries (implements java.lang.Cloneable, java.io.Serializable)
    • org.jfree.data.XYSeries (implements java.lang.Cloneable, java.io.Serializable)
  • org.jfree.chart.SeriesShapeFactory (implements org.jfree.chart.ShapeFactory)
  • org.graffiti.session.Session (implements org.graffiti.session.ConstraintCheckerListener)
    • org.graffiti.session.EditorSession (implements java.awt.event.ActionListener)
  • org.graffiti.session.SessionAdapter (implements org.graffiti.session.SessionListener)
    • org.vanted.scaling.vanted.GraphScaler (implements javax.swing.event.ChangeListener)
  • org.graffiti.session.SessionAdapterExt (implements org.graffiti.session.SessionListenerExt)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.SessionLinkInfo (implements java.lang.Comparable<T>)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.SetAbleBoolean
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings.SetJavaMemoryMacOS
  • org.SettingsHelperDefaultIsTrue (implements org.HelperClass)
    • org.SettingsHelperDefaultIsFalse
  • java.beans.SimpleBeanInfo (implements java.beans.BeanInfo)
    • net.iharder.dnd.FileDropBeanBeanInfo
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.SimpleModel
  • org.jfree.data.time.SimpleTimePeriod (implements java.io.Serializable, org.jfree.data.time.TimePeriod)
  • info.clearthought.layout.SingleFiledLayout (implements java.awt.LayoutManager, java.io.Serializable)
  • org.vanted.plugins.layout.stressminimization.parameters.SliderOptions
  • placement.SlowPriorityQueue<T> (implements placement.MaxPriorityQueue<T>)
  • org.vanted.plugins.layout.multilevelframework.SolarMerger (implements org.vanted.plugins.layout.multilevelframework.Merger)
  • org.vanted.plugins.layout.multilevelframework.SolarPlacer (implements org.vanted.plugins.layout.multilevelframework.Placer)
  • qmwi.kseg.som.SOM_ColorReduce
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMguiHelper (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMservice (implements org.BackgroundTaskStatusProvider, org.BackgroundTaskStatusProviderSupportingExternalCall, java.lang.Runnable)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings.SortJTree
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.SpecialTableValue
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.SplitResult
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe.SqlMeasurementData
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe.SqlSampleAverageData
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe.SqlSampleIdTimeUnitInfo
  • org.jfree.chart.urls.StandardCategoryURLGenerator (implements org.jfree.chart.urls.CategoryURLGenerator, java.lang.Cloneable, java.io.Serializable)
  • org.jfree.chart.labels.StandardContourToolTipGenerator (implements org.jfree.chart.labels.ContourToolTipGenerator, java.io.Serializable)
  • org.jfree.chart.entity.StandardEntityCollection (implements java.lang.Cloneable, org.jfree.chart.entity.EntityCollection, java.io.Serializable)
  • org.jfree.chart.StandardLegendItemLayout (implements org.jfree.chart.LegendItemLayout)
  • org.jfree.chart.labels.StandardPieItemLabelGenerator (implements java.lang.Cloneable, org.jfree.chart.labels.PieSectionLabelGenerator, org.jfree.chart.labels.PieToolTipGenerator, java.io.Serializable)
  • org.jfree.chart.urls.StandardPieURLGenerator (implements org.jfree.chart.urls.PieURLGenerator, java.io.Serializable)
  • org.jfree.chart.axis.StandardTickUnitSource (implements org.jfree.chart.axis.TickUnitSource)
  • org.jfree.chart.imagemap.StandardToolTipTagFragmentGenerator (implements org.jfree.chart.imagemap.ToolTipTagFragmentGenerator)
  • org.jfree.chart.imagemap.StandardURLTagFragmentGenerator (implements org.jfree.chart.imagemap.URLTagFragmentGenerator)
  • org.jfree.chart.urls.StandardXYURLGenerator (implements java.io.Serializable, org.jfree.chart.urls.XYURLGenerator)
    • org.jfree.chart.urls.StandardXYZURLGenerator (implements org.jfree.chart.urls.XYZURLGenerator)
  • org.vanted.plugins.layout.multilevelframework.StartBenchmarks
  • org.vanted.plugins.layout.multilevelframework.StartVantedWithAddon
  • org.vanted.plugins.layout.stressminimization.StartVantedWithStressMinAddon
  • org.vanted.indexednodes.accumulators.StatefulAccumulator<T,O> (implements java.util.function.Consumer<T>)
    • org.vanted.indexednodes.accumulators.DistanceAccumulator
    • org.vanted.indexednodes.accumulators.EdgeCountAccumulator
    • org.vanted.indexednodes.accumulators.IndexedEdgeListAccumulator
    • org.vanted.indexednodes.accumulators.IndexedNodeSetAccumulator
    • org.vanted.indexednodes.accumulators.NodeCountAccumulator
  • org.jfree.data.statistics.Statistics
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.StatisticTable
  • org.vanted.plugins.layout.stressminimization.StressMinimizationImplementation
  • org.vanted.plugins.layout.stressminimization.StressMinParamModel
  • org.vanted.plugins.layout.stressminimization.StressMinParamModel.RadiosOFEnum<E>
  • org.StringManipulationTools (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe.StringScanner (implements org.HelperClass)
  • org.graffiti.util.StringSplitter
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance (implements java.lang.Cloneable, de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.SubstanceColumnInformation
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Subtype
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.SubtypeValue
  • org.graffiti.plugins.ios.importers.gml.sym
  • org.jfree.chart.labels.SymbolicXYItemLabelGenerator (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable, org.jfree.chart.labels.XYLabelGenerator, org.jfree.chart.labels.XYToolTipGenerator)
  • org.jfree.chart.demo.SymbolicXYPlotDemo
  • org.jfree.chart.demo.SymbolicYPlotDemo
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.threading.SystemAnalysis (implements org.HelperClass)
  • org.SystemInfo (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.AlternativeIdentifierTableData
  • info.clearthought.layout.TableLayout (implements java.awt.LayoutManager2, java.io.Serializable, info.clearthought.layout.TableLayoutConstants)
  • info.clearthought.layout.TableLayoutConstraints (implements info.clearthought.layout.TableLayoutConstants)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.TargetYandNewNodeResult
  • org.jfree.data.gantt.Task
  • de.ipk_gatersleben.ag_pbi.datahandling.Template
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TemplateFile
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TemplateFileManager
  • de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoader (implements de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.ExperimentDataDragAndDropHandler)
  • de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoaderInstance (implements de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoaderInterface)
  • de.ipk_gatersleben.ag_pbi.datahandling.TemplateManager
  • qmwi.kseg.som.diagram.Test
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.TestImageExport
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.Testttt
  • org.jfree.chart.annotations.TextAnnotation (implements java.io.Serializable)
    • org.jfree.chart.annotations.CategoryTextAnnotation (implements org.jfree.chart.annotations.CategoryAnnotation, java.lang.Cloneable, java.io.Serializable)
    • org.jfree.chart.annotations.XYTextAnnotation (implements java.lang.Cloneable, java.io.Serializable, org.jfree.chart.annotations.XYAnnotation)
      • org.jfree.chart.annotations.XYPointerAnnotation (implements java.lang.Cloneable, java.io.Serializable, org.jfree.chart.annotations.XYAnnotation)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.TextFileColumnInformation
  • java.lang.Thread (implements java.lang.Runnable)
    • org.graffiti.util.DelayThread
  • org.graffiti.plugin.algorithm.ThreadSafeAlgorithm (implements org.graffiti.plugin.algorithm.Algorithm)
    • org.vanted.plugins.layout.stressminimization.BackgroundExecutionAlgorithm (implements java.beans.PropertyChangeListener, org.graffiti.session.SessionListener)
    • org.vanted.plugins.layout.multilevelframework.ForceDirectedLayoutWrapper
    • org.vanted.plugins.layout.multilevelframework.MultilevelFrameworkLayout
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache.PatternSpringembedder
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder3d
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate.RotateAlgorithm (implements java.awt.event.ActionListener, org.graffiti.plugin.algorithm.ProvidesGeneralContextMenu)
  • org.graffiti.plugin.algorithm.ThreadSafeOptions (implements org.HelperClass)
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • org.graffiti.editor.AttributeComponentNotFoundException
      • org.graffiti.editor.EditComponentNotFoundException
      • org.graffiti.util.InstanceCreationException
      • java.io.IOException
        • org.graffiti.plugins.ios.importers.graphml.GraphMLException
        • org.graffiti.plugin.io.ParserException
      • org.graffiti.event.ListenerNotFoundException
      • org.jfree.chart.renderer.NotOutlierException
      • org.graffiti.plugin.algorithm.ParameterOutOfBoundsException
      • org.graffiti.managers.pluginmgr.PluginManagerException
        • org.graffiti.managers.pluginmgr.PluginAlreadyLoadedException
      • org.graffiti.plugin.algorithm.PreconditionException
      • java.lang.RuntimeException
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.AddonInstantiationRuntimeException
        • org.graffiti.attributes.AttributeExistsException
        • org.graffiti.attributes.AttributeNotFoundException
        • org.graffiti.attributes.FieldAlreadySetException
        • org.graffiti.graph.GraphElementNotFoundException
        • java.lang.IllegalArgumentException
          • org.jfree.data.time.TimePeriodFormatException
        • org.graffiti.attributes.IllegalIdException
        • org.vanted.indexednodes.IndexedNodeSet.NodeNotContainedException
        • org.vanted.indexednodes.IndexedNodeSet.NotIndexedException
        • org.graffiti.event.ListenerRegistrationException
        • org.graffiti.attributes.NoCollectionAttributeException
        • org.graffiti.plugin.algorithm.NoNextStepException
        • org.jfree.data.SeriesException (implements java.io.Serializable)
      • org.graffiti.plugin.view.ShapeNotFoundException
      • org.graffiti.attributes.UnificationException
      • org.graffiti.session.UnsatisfiedConstraintException
  • org.jfree.chart.axis.Tick (implements java.lang.Cloneable, java.io.Serializable)
    • org.jfree.chart.axis.CategoryTick
    • org.jfree.chart.axis.ValueTick
      • org.jfree.chart.axis.DateTick
      • org.jfree.chart.axis.NumberTick
  • org.jfree.chart.axis.TickUnit (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.jfree.chart.axis.DateTickUnit (implements java.io.Serializable)
    • org.jfree.chart.axis.NumberTickUnit (implements java.io.Serializable)
      • org.jfree.chart.axis.SymbolicTickUnit (implements java.io.Serializable)
  • org.jfree.chart.axis.TickUnits (implements java.lang.Cloneable, java.io.Serializable, org.jfree.chart.axis.TickUnitSource)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.Tie
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TimeAndPlantName
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.TimeAndTimeUnit
  • org.jfree.data.time.TimePeriodAnchor (implements java.io.Serializable)
  • org.jfree.data.time.TimePeriodValue (implements java.lang.Cloneable, java.io.Serializable)
  • org.vanted.animation.data.TimePoint<T>
    • org.vanted.animation.data.BooleanTimePoint
    • org.vanted.animation.data.InterpolatableTimePoint<T>
      • org.vanted.animation.data.ColorTimePoint
      • org.vanted.animation.data.DoubleTimePoint
      • org.vanted.animation.data.Point2DTimePoint
      • org.vanted.animation.data.VectorTimePoint<T>
    • org.vanted.animation.data.StringTimePoint
  • java.util.TimerTask (implements java.lang.Runnable)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network.BroadCastTask
  • org.jfree.data.time.TimeSeriesDataItem (implements java.lang.Cloneable, java.lang.Comparable<T>, java.io.Serializable)
  • org.jfree.chart.urls.TimeSeriesURLGenerator (implements java.io.Serializable, org.jfree.chart.urls.XYURLGenerator)
  • org.jfree.chart.title.Title (implements java.lang.Cloneable, java.io.Serializable)
    • org.jfree.chart.title.ImageTitle
    • org.jfree.chart.title.LegendTitle
    • org.jfree.chart.title.TextTitle (implements java.lang.Cloneable, java.io.Serializable)
      • org.jfree.chart.title.DateTitle
  • org.vanted.scaling.Toolbox
  • qmwi.kseg.som.Tools
  • org.graffiti.plugin.ToolTipHelper (implements org.HelperClass)
  • org.graffiti.event.TransactionAdapter (implements org.graffiti.event.TransactionListener)
  • net.iharder.dnd.TransferableObject (implements java.awt.datatransfer.Transferable)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathEntity (implements de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathEntityType)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathGene
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathMolecule
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathPathway
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReaction
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReference
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathService (implements org.BackgroundTaskStatusProvider, de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.FileDownloadStatusInformationProvider, org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.TreeAttributSearcher
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.TreeContainer
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.TristateCheckBox.State
  • org.graffiti.plugins.ios.importers.TypedAttributeService (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.UDPreceiveStructure
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.UllmannSubraphIsomAdjMatrixState
  • org.UNCFileLocationCheck
  • org.graffiti.managers.pluginmgr.UnresolvableDependenyException
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.Url
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.UtilityClassSelectorToGraph
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility.UtilityClassSelectorToGraph
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ValueAndGraphElement
  • org.graffiti.plugin.editcomponent.ValueEditComponentAdapter (implements org.graffiti.plugin.editcomponent.ValueEditComponent)
    • org.graffiti.plugin.editcomponent.AbstractValueEditComponent
      • org.graffiti.plugin.editcomponent.AbstractDialogableEditComponent
      • org.graffiti.plugins.editcomponents.defaults.BooleanEditComponent
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartAttributeEditor
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttributeEditor
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartsColumnAttributeEditor
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttributeEditor
      • org.graffiti.plugins.editcomponents.defaults.ColorChooserEditComponent
      • org.graffiti.plugin.editcomponent.ComboBoxEditComponent
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.enhanced_attribute_editors.ArrowShapeEditComponent
        • org.graffiti.plugins.editcomponents.defaults.EdgeArrowShapeEditComponent
        • org.graffiti.plugins.editcomponents.defaults.EdgeShapeEditComponent
        • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.NodePathwayLinkVisualizationAttributeEditor
        • org.graffiti.plugins.editcomponents.defaults.NodeShapeEditComponent
        • org.graffiti.plugins.editcomponents.defaults.ObjectListComponent
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundImageAttributeEditor
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundImagePositionAttributeEditor
      • org.graffiti.plugins.views.defaults.DockingAttributeEditor
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.enhanced_attribute_editors.EnhDoubleEditComponent (implements java.awt.event.ActionListener)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttributeEditor
      • org.graffiti.plugins.views.defaults.GradientFillAttributeEditor
      • org.graffiti.plugin.editcomponent.GraphComponentEditComponent
        • org.graffiti.plugin.editcomponent.SingleGraphElementEditComponent
          • org.graffiti.plugin.editcomponent.EdgeEditComponent
          • org.graffiti.plugin.editcomponent.NodeEditComponent
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggGroupPartAttributeEditor (implements java.awt.event.ActionListener)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionIdAttributeEditor (implements java.awt.event.ActionListener)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionTypeAttributeEditor (implements java.awt.event.ActionListener)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSubTypeAttributeEditor
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationTypeAttributeEditor (implements java.awt.event.ActionListener)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggTypeAttributeEditor (implements java.awt.event.ActionListener)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment.LabelAlignmentAttributeEditor
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings.LabelFontAttributeEditor
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style.LabelStyleAttributeEditor
      • org.vanted.plugins.layout.stressminimization.parameters.LandmarkSliderComponent (implements javax.swing.event.ChangeListener, org.graffiti.session.SessionListener)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.LineModeAttributeEditor
      • org.graffiti.plugins.editcomponents.defaults.LineModeEditComponent
      • org.graffiti.plugins.editcomponents.defaults.MultiFileSelectionEditComponent
      • org.graffiti.plugin.editcomponent.NumberEditComponent
        • org.graffiti.plugins.editcomponents.defaults.ByteEditComponent
        • org.graffiti.plugins.editcomponents.defaults.DoubleEditComponent
        • org.graffiti.plugins.editcomponents.defaults.FloatEditComponent
        • org.graffiti.plugins.editcomponents.defaults.IntegerEditComponent
        • org.graffiti.plugins.editcomponents.defaults.LongEditComponent
        • org.graffiti.plugins.editcomponents.defaults.ShortEditComponent
      • org.vanted.plugins.layout.stressminimization.parameters.SliderComponent
      • org.graffiti.plugin.editcomponent.SpinnerEditComponent
      • org.graffiti.plugin.editcomponent.StandardValueEditComponent
      • org.graffiti.plugins.editcomponents.defaults.StringEditComponent
        • org.graffiti.plugins.editcomponents.defaults.TextAreaEditComponent
      • org.graffiti.plugins.views.defaults.ThicknessAttributeEditor
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttributeEditor
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttributeEditor
  • org.vanted.VantedPreferences (implements org.graffiti.options.PreferencesInterface)
  • placement.Variable
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kgml.Vector2d
  • org.Vector2d
  • org.Vector2df
  • org.Vector3d
  • org.graffiti.managers.pluginmgr.Version (implements java.lang.Comparable<T>)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.VTextIcon (implements javax.swing.Icon, java.beans.PropertyChangeListener)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.WebDirectoryFileListAccess
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.WeightedDistanceInfo
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.WorkSettings
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.WorkTask
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLConstants
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLDTDResolver (implements org.xml.sax.EntityResolver)
  • org.xml.sax.helpers.XMLFilterImpl (implements org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler, org.xml.sax.XMLFilter)
    • org.graffiti.plugins.ios.importers.graphml.parser.GraphMLFilter
  • org.graffiti.plugin.XMLHelper (implements org.HelperClass)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper (implements org.HelperClass)
  • org.jfree.data.XYDataItem (implements java.lang.Cloneable, java.lang.Comparable<T>, java.io.Serializable)
    • org.jfree.data.XYDataPair
  • org.jfree.chart.annotations.XYDrawableAnnotation (implements java.lang.Cloneable, java.io.Serializable, org.jfree.chart.annotations.XYAnnotation)
  • org.jfree.chart.annotations.XYImageAnnotation (implements java.lang.Cloneable, java.io.Serializable, org.jfree.chart.annotations.XYAnnotation)
  • org.jfree.chart.annotations.XYLineAnnotation (implements java.lang.Cloneable, java.io.Serializable, org.jfree.chart.annotations.XYAnnotation)
  • org.jfree.chart.annotations.XYShapeAnnotation (implements java.io.Serializable, org.jfree.chart.annotations.XYAnnotation)
  • org.jfree.chart.demo.XYStepChartDemo

Interface Hierarchy

• org.graffiti.plugin.algorithm.Algorithm
  • org.graffiti.plugin.algorithm.AnimatedAlgorithm
  • org.graffiti.plugin.algorithm.CalculatingAlgorithm
  • org.graffiti.plugin.algorithm.EditorAlgorithm
• org.graffiti.plugin.algorithm.AlgorithmResult
• org.graffiti.plugin.algorithm.AlgorithmWithComponentDescription
• org.vanted.animation.AnimatorListener<T>
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.AnnotationProvider
• org.graffiti.attributes.Attributable
  • org.graffiti.graph.Graph (also extends org.graffiti.core.DeepCopy)
    • org.vanted.plugins.layout.multilevelframework.CoarsenedGraph
  • org.graffiti.graph.GraphElement (also extends java.lang.Comparable<T>)
    • org.graffiti.graph.Edge
    • org.graffiti.graph.Node
• org.graffiti.attributes.AttributeConsumer
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.AttributeValuePairSupport
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MappingDataEntity
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface (also extends java.lang.Comparable<T>, java.util.Set<E>)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface (also extends java.lang.Cloneable, java.util.List<E>)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Measurement
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurementInterface (also extends de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MappingDataEntity)
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverageInterface
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurementInterface (also extends de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Measurement)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface (also extends java.util.Collection<E>, java.lang.Comparable<T>)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface (also extends java.util.Collection<E>, java.lang.Comparable<T>, org.HelperClass)
• java.awt.dnd.Autoscroll
  • org.graffiti.plugin.view.View (also extends org.graffiti.event.AttributeListener, org.graffiti.event.EdgeListener, org.graffiti.event.GraphListener, org.graffiti.event.NodeListener, org.graffiti.plugin.view.Zoomable, org.graffiti.plugin.view.ZoomListener)
    • org.graffiti.plugin.view.GraphView
    • org.graffiti.plugin.view.View2D
    • org.graffiti.plugin.view.View3D
• de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskGUIprovider
• org.BackgroundTaskStatusProvider
  • de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskStatusProvider
  • org.BackgroundTaskStatusProviderSupportingExternalCall
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter.BiomodelsLoaderCallback
• org.jfree.chart.annotations.CategoryAnnotation
• org.jfree.chart.renderer.CategoryItemRenderer
• org.jfree.chart.labels.CategoryLabelGenerator
• org.jfree.chart.labels.CategoryToolTipGenerator
• org.jfree.chart.urls.CategoryURLGenerator
• de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartComponent
• org.jfree.chart.ChartMouseListener
• org.jfree.chart.ChartPanelConstants
• java.lang.Cloneable
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface (also extends java.lang.Comparable<T>)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface (also extends java.util.List<E>, de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MappingDataEntity)
• org.graffiti.attributes.ColorSetAndGetSupport
• org.jfree.data.CombinationDataset
• java.lang.Comparable<T>
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface (also extends de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MappingDataEntity, java.util.Set<E>)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface (also extends java.lang.Cloneable)
  • org.graffiti.graph.GraphElement (also extends org.graffiti.attributes.Attributable)
    • org.graffiti.graph.Edge
    • org.graffiti.graph.Node
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface (also extends java.util.Collection<E>, de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MappingDataEntity)
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface (also extends java.util.Collection<E>, org.HelperClass, de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MappingDataEntity)
• org.graffiti.session.ConstraintCheckerListener
• org.graffiti.plugin.inspector.ContainsTabbedPane
• org.jfree.chart.labels.ContourToolTipGenerator
• org.jfree.chart.plot.ContourValuePlot
• org.graffiti.plugin.view.CustomFullscreenView
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingTypeManagerInterface
• org.jfree.data.Dataset
  • org.jfree.data.CategoryDataset (also extends org.jfree.data.KeyedValues2D)
    • org.jfree.data.statistics.BoxAndWhiskerCategoryDataset
    • org.jfree.data.IntervalCategoryDataset
      • org.jfree.data.gantt.GanttCategoryDataset
    • org.jfree.data.KeyedValues2DDataset
    • org.jfree.data.statistics.StatisticalCategoryDataset
  • org.jfree.data.KeyedValueDataset (also extends org.jfree.data.KeyedValue)
  • org.jfree.data.PieDataset (also extends org.jfree.data.KeyedValues)
    • org.jfree.data.KeyedValuesDataset
  • org.jfree.data.SeriesDataset
    • org.jfree.data.XYDataset
      • org.jfree.data.statistics.BoxAndWhiskerXYDataset
      • org.jfree.data.HighLowDataset
      • org.jfree.data.IntervalXYDataset
      • org.jfree.data.SignalsDataset
      • org.jfree.data.TableXYDataset
      • org.jfree.data.WindDataset
      • org.jfree.data.XYZDataset
        • org.jfree.data.ContourDataset
        • org.jfree.data.IntervalXYZDataset
  • org.jfree.data.ValueDataset (also extends org.jfree.data.Value)
    • org.jfree.data.MeterDataset
• org.jfree.data.xml.DatasetTags
• org.graffiti.core.DeepCopy
  • org.graffiti.attributes.Attribute (also extends org.graffiti.plugin.Displayable)
    • org.graffiti.attributes.CollectionAttribute (also extends org.graffiti.core.DeepCopy)
      • org.graffiti.attributes.SortedCollectionAttribute
  • org.graffiti.attributes.CollectionAttribute (also extends org.graffiti.attributes.Attribute)
    • org.graffiti.attributes.SortedCollectionAttribute
  • org.graffiti.graph.Graph (also extends org.graffiti.attributes.Attributable)
    • org.vanted.plugins.layout.multilevelframework.CoarsenedGraph
• org.graffiti.util.DelayThread.DelayedCallback
• org.graffiti.plugins.modes.defaults.DeleteAction
• org.graffiti.managers.pluginmgr.Dependency
• org.vanted.plugins.layout.multilevelframework.Describable
  • org.vanted.plugins.layout.multilevelframework.Merger (also extends org.vanted.plugins.layout.multilevelframework.Parameterizable)
  • org.vanted.plugins.layout.multilevelframework.Placer (also extends org.vanted.plugins.layout.multilevelframework.Parameterizable)
• org.graffiti.plugin.Displayable
  • org.graffiti.attributes.Attribute (also extends org.graffiti.core.DeepCopy)
    • org.graffiti.attributes.CollectionAttribute (also extends org.graffiti.core.DeepCopy)
      • org.graffiti.attributes.SortedCollectionAttribute
  • org.graffiti.plugin.parameter.Parameter
    • org.graffiti.plugin.parameter.ParameterList
    • org.graffiti.plugin.parameter.SingleParameter
      • org.graffiti.plugin.parameter.LimitableParameter
• org.jfree.data.DomainInfo
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.DragAndDropHandler
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.DataDragAndDropHandler
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.ExperimentDataDragAndDropHandler
• org.jfree.chart.plot.DrawingSupplier
• org.jfree.chart.Effect3D
• org.jfree.chart.entity.EntityCollection
• java.util.EventListener
  • org.jfree.chart.event.AxisChangeListener
  • org.jfree.chart.event.ChartChangeListener
  • org.jfree.chart.event.ChartProgressListener
  • org.jfree.data.DatasetChangeListener
  • net.iharder.dnd.FileDropListener
  • org.jfree.chart.event.LegendChangeListener
  • java.awt.event.MouseListener
    • javax.swing.event.MouseInputListener (also extends java.awt.event.MouseMotionListener)
      • org.graffiti.plugin.tool.Tool
  • java.awt.event.MouseMotionListener
    • javax.swing.event.MouseInputListener (also extends java.awt.event.MouseListener)
      • org.graffiti.plugin.tool.Tool
  • org.jfree.chart.event.PlotChangeListener
  • org.jfree.chart.event.RendererChangeListener
  • org.jfree.data.SeriesChangeListener
  • org.jfree.chart.event.TitleChangeListener
  • org.graffiti.event.TransactionListener
    • org.graffiti.event.AttributeListener
      • org.graffiti.plugin.editcomponent.ValueEditComponent (also extends org.graffiti.event.EdgeListener, org.graffiti.event.GraphListener, org.graffiti.event.NodeListener, org.graffiti.event.TransactionListener)
      • org.graffiti.plugin.view.View (also extends java.awt.dnd.Autoscroll, org.graffiti.event.EdgeListener, org.graffiti.event.GraphListener, org.graffiti.event.NodeListener, org.graffiti.plugin.view.Zoomable, org.graffiti.plugin.view.ZoomListener)
        • org.graffiti.plugin.view.GraphView
        • org.graffiti.plugin.view.View2D
        • org.graffiti.plugin.view.View3D
    • org.graffiti.event.EdgeListener
      • org.graffiti.plugin.editcomponent.ValueEditComponent (also extends org.graffiti.event.AttributeListener, org.graffiti.event.GraphListener, org.graffiti.event.NodeListener, org.graffiti.event.TransactionListener)
      • org.graffiti.plugin.view.View (also extends org.graffiti.event.AttributeListener, java.awt.dnd.Autoscroll, org.graffiti.event.GraphListener, org.graffiti.event.NodeListener, org.graffiti.plugin.view.Zoomable, org.graffiti.plugin.view.ZoomListener)
        • org.graffiti.plugin.view.GraphView
        • org.graffiti.plugin.view.View2D
        • org.graffiti.plugin.view.View3D
    • org.graffiti.event.GraphListener
      • org.graffiti.plugin.editcomponent.ValueEditComponent (also extends org.graffiti.event.AttributeListener, org.graffiti.event.EdgeListener, org.graffiti.event.NodeListener, org.graffiti.event.TransactionListener)
      • org.graffiti.plugin.view.View (also extends org.graffiti.event.AttributeListener, java.awt.dnd.Autoscroll, org.graffiti.event.EdgeListener, org.graffiti.event.NodeListener, org.graffiti.plugin.view.Zoomable, org.graffiti.plugin.view.ZoomListener)
        • org.graffiti.plugin.view.GraphView
        • org.graffiti.plugin.view.View2D
        • org.graffiti.plugin.view.View3D
    • org.graffiti.event.NodeListener
      • org.graffiti.plugin.editcomponent.ValueEditComponent (also extends org.graffiti.event.AttributeListener, org.graffiti.event.EdgeListener, org.graffiti.event.GraphListener, org.graffiti.event.TransactionListener)
      • org.graffiti.plugin.view.View (also extends org.graffiti.event.AttributeListener, java.awt.dnd.Autoscroll, org.graffiti.event.EdgeListener, org.graffiti.event.GraphListener, org.graffiti.plugin.view.Zoomable, org.graffiti.plugin.view.ZoomListener)
        • org.graffiti.plugin.view.GraphView
        • org.graffiti.plugin.view.View2D
        • org.graffiti.plugin.view.View3D
    • org.graffiti.plugin.editcomponent.ValueEditComponent (also extends org.graffiti.event.AttributeListener, org.graffiti.event.EdgeListener, org.graffiti.event.GraphListener, org.graffiti.event.NodeListener)
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataPresenter
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataReceiver
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataProcessor
• org.graffiti.plugin.extension.Extension
• de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.FileDownloadStatusInformationProvider
• net.iharder.dnd.FileDrop.Listener
• org.graffiti.editor.actions.FileHandlingListeners
• org.jfree.data.Function2D
• org.graffiti.plugin.GenericPlugin
  • org.graffiti.plugin.EditorPlugin
    • org.graffiti.plugin.inspector.InspectorPlugin
• org.graffiti.plugin.gui.GraffitiComponent
  • org.graffiti.plugin.gui.GraffitiContainer
    • org.graffiti.plugin.gui.GraffitiToolComponent
• org.graffiti.plugin.view.GraffitiViewComponent
• org.graffiti.plugin.mode.GraphConstraint
• org.graffiti.plugin.view.GraphElementComponentInterface
  • org.graffiti.plugin.view.EdgeComponentInterface
  • org.graffiti.plugin.view.NodeComponentInterface
• org.graffiti.graphics.GraphicAttributeConstants
• de.ipk_gatersleben.ag_nw.graffiti.services.HandlesAlgorithmData
• org.HelperClass
  • scenario.ScenarioServiceHandlesStoredParametersOption
  • scenario.ScenarioServiceIgnoreAlgorithm
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface (also extends java.util.Collection<E>, java.lang.Comparable<T>, de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MappingDataEntity)
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.IContextMenuManager
• de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.ImageFileResultProcessor
• org.graffiti.managers.IOManager.IOManagerListener
• java.lang.Iterable<T>
  • java.util.Collection<E>
    • java.util.List<E>
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface (also extends java.lang.Cloneable, de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MappingDataEntity)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface (also extends java.lang.Comparable<T>, de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MappingDataEntity)
    • java.util.Set<E>
      • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface (also extends java.lang.Comparable<T>, de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MappingDataEntity)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface (also extends java.lang.Comparable<T>, org.HelperClass, de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MappingDataEntity)
• org.jfree.chart.LegendItemLayout
• de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.LinkProcessor
• placement.MaxPriorityQueue<T>
• org.graffiti.editor.MemoryHog
• org.graffiti.plugin.view.MessageListener
• org.graffiti.plugin.mode.Mode
• org.MultipleFileLoader
• org.graffiti.plugin.editcomponent.NeedEditComponents
• de.ipk_gatersleben.ag_nw.graffiti.NeedsSwingThread
• org.graffiti.graph.NodeHierarchy
• org.graffiti.options.OptionPane
• de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.PaintStatusSupport
• org.graffiti.editor.dialog.ParameterDialog
• org.vanted.plugins.layout.multilevelframework.Parameterizable
  • org.vanted.plugins.layout.multilevelframework.Merger (also extends org.vanted.plugins.layout.multilevelframework.Describable)
  • org.vanted.plugins.layout.multilevelframework.Placer (also extends org.vanted.plugins.layout.multilevelframework.Describable)
• org.jfree.chart.labels.PieSectionLabelGenerator
• org.jfree.chart.labels.PieToolTipGenerator
• org.jfree.chart.urls.PieURLGenerator
• placement.Placement
• org.graffiti.managers.pluginmgr.PluginDescriptionCollector
• org.graffiti.managers.pluginmgr.PluginEntry
• org.graffiti.managers.pluginmgr.PluginManager
• org.graffiti.managers.pluginmgr.PluginManagerListener
  • org.graffiti.managers.AlgorithmManager
  • org.graffiti.managers.IOManager
  • org.graffiti.managers.ModeManager
  • org.graffiti.managers.ToolManager
  • org.graffiti.managers.URLattributeActionManager
  • org.graffiti.managers.ViewManager (also extends org.graffiti.plugin.view.ViewListener)
• org.jfree.chart.renderer.PolarItemRenderer
• org.graffiti.options.PreferencesInterface
• org.graffiti.util.ProgressViewer
  • org.graffiti.editor.SplashScreenInterface
• org.graffiti.plugin.algorithm.ProvidesAccessToOtherAlgorithms
• org.graffiti.plugin.view.ProvidesAdditonalDrawingShapes
• org.graffiti.plugin.algorithm.ProvidesDirectMouseClickContextMenu
• org.graffiti.plugin.algorithm.ProvidesEdgeContextMenu
• de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.ProvidesExplanation
• org.graffiti.plugin.algorithm.ProvidesGeneralContextMenu
• org.graffiti.plugin.algorithm.ProvidesNodeContextMenu
• de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.ProvidesRSSfeed
• scenario.ProvidesScenarioSupportCommand
• scenario.ProvidesScenarioSupportCommands
• org.ProvidesStringInitMethod
• org.jfree.data.RangeInfo
• org.graffiti.plugin.tool.ReceiveHighlightInfo
• placement.RectanglePlacement
• org.graffiti.plugin.io.resources.ResourceIOConfigObject
• org.graffiti.plugin.io.resources.ResourceIOHandler
• java.lang.Runnable
  • org.graffiti.editor.ConfigureViewAction
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.RunnableForFile
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.RunnableWithMappingData
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.RunnableWithXMLexperimentData
• org.vanted.scaling.scalers.Scaler
  • org.vanted.scaling.scalers.component.HTMLScaler
• scenario.ScenarioGui
• org.SearchFilter
• org.graffiti.selection.SelectionListener
• org.graffiti.plugin.io.Serializer
  • org.graffiti.plugin.io.GraphPostProcessor
  • org.graffiti.plugin.io.InputSerializer
  • org.graffiti.plugin.io.OutputSerializer
• org.graffiti.session.SessionListener
  • org.graffiti.session.SessionListenerExt
• org.graffiti.session.SessionManager
• java.awt.Shape
  • org.graffiti.plugin.view.ArrowShape
  • org.graffiti.plugin.view.GraffitiShape
    • org.graffiti.plugin.view.AttributeShape
    • org.graffiti.plugin.view.GraphElementShape
      • org.graffiti.plugin.view.EdgeShape
      • org.graffiti.plugin.view.NodeShape
• org.jfree.chart.ShapeFactory
• qmwi.kseg.som.SOMdataEntry
• org.graffiti.plugins.views.defaults.SupportsHollowDrawing
• org.graffiti.plugin.io.SupportsWriterOutput
• org.graffiti.plugin.view.SuppressSaveActionsView
• info.clearthought.layout.TableLayoutConstants
• de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoaderInterface
• org.jfree.chart.axis.TickUnitSource
• org.jfree.chart.axis.Timeline
• org.jfree.data.time.TimePeriod
• org.jfree.chart.imagemap.ToolTipTagFragmentGenerator
• net.iharder.dnd.TransferableObject.Fetcher
• de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathEntityType
• javax.swing.tree.TreeModel
  • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.TreeTableModel
• org.graffiti.undo.Undoable
• org.graffiti.plugin.actions.URLattributeAction
• org.jfree.chart.imagemap.URLTagFragmentGenerator
• org.jfree.data.Value
  • org.jfree.data.KeyedValue
    • org.jfree.data.KeyedValueDataset (also extends org.jfree.data.Dataset)
  • org.jfree.data.ValueDataset (also extends org.jfree.data.Dataset)
    • org.jfree.data.MeterDataset
• org.jfree.chart.plot.ValueAxisPlot
• org.graffiti.editor.dialog.ValueEditContainer
• org.jfree.data.Values
  • org.jfree.data.KeyedValues
    • org.jfree.data.PieDataset (also extends org.jfree.data.Dataset)
      • org.jfree.data.KeyedValuesDataset
• org.jfree.data.Values2D
  • org.jfree.data.KeyedValues2D
    • org.jfree.data.CategoryDataset (also extends org.jfree.data.Dataset)
      • org.jfree.data.statistics.BoxAndWhiskerCategoryDataset
      • org.jfree.data.IntervalCategoryDataset
        • org.jfree.data.gantt.GanttCategoryDataset
      • org.jfree.data.KeyedValues2DDataset
      • org.jfree.data.statistics.StatisticalCategoryDataset
• org.graffiti.plugin.view.ViewListener
  • org.graffiti.managers.ViewManager (also extends org.graffiti.managers.pluginmgr.PluginManagerListener)
• org.graffiti.managers.ViewManager.ViewManagerListener
• org.jfree.data.XisSymbolic
• org.jfree.chart.annotations.XYAnnotation
• org.jfree.chart.renderer.XYItemRenderer
• org.jfree.chart.labels.XYLabelGenerator
• org.jfree.chart.labels.XYToolTipGenerator
  • org.jfree.chart.labels.XYZToolTipGenerator
• org.jfree.chart.urls.XYURLGenerator
  • org.jfree.chart.urls.XYZURLGenerator
• org.jfree.data.YisSymbolic
• org.graffiti.plugin.view.Zoomable
  • org.graffiti.plugin.view.View (also extends org.graffiti.event.AttributeListener, java.awt.dnd.Autoscroll, org.graffiti.event.EdgeListener, org.graffiti.event.GraphListener, org.graffiti.event.NodeListener, org.graffiti.plugin.view.ZoomListener)
    • org.graffiti.plugin.view.GraphView
    • org.graffiti.plugin.view.View2D
    • org.graffiti.plugin.view.View3D
• org.graffiti.plugin.view.ZoomListener
  • org.graffiti.plugin.view.View (also extends org.graffiti.event.AttributeListener, java.awt.dnd.Autoscroll, org.graffiti.event.EdgeListener, org.graffiti.event.GraphListener, org.graffiti.event.NodeListener, org.graffiti.plugin.view.Zoomable)
    • org.graffiti.plugin.view.GraphView
    • org.graffiti.plugin.view.View2D
    • org.graffiti.plugin.view.View3D

Annotation Type Hierarchy

• unit_test_support.TestValueRequired (implements java.lang.annotation.Annotation)

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
    • org.graffiti.event.AbstractEvent.EVENTTYPE
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.AddOnInstallResult
    • org.AlignmentSetting
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.zoomfit.AlignNodesCommand.Command
    • org.ApplicationStatus
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.AttributeCalculation
    • org.vanted.plugins.layout.stressminimization.BackgroundStatus
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter.QueryAdvanced
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter.QueryType
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BundleParallelEdges.Shapes
    • org.graffiti.plugin.algorithm.Category
    • org.vanted.animation.data.ColorMode
    • org.CondenseButtonLayout
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition.ConditionInfo
    • org.graffiti.plugin.view.CoordinateSystem
    • org.graffiti.plugins.views.defaults.Corner
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping.DataMapping.ShowMappingResults
    • org.graffiti.plugins.views.defaults.DockingAttributeEditor.DockingModes
    • org.graffiti.plugins.views.defaults.DrawMode
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.EntryType
    • org.FeatureSet
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.FeedDownloadType
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.FisherOperationMode
    • org.FolderPanel.Iconsize
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayError
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayWarning
    • org.graffiti.plugins.views.defaults.GradientFillAttributeEditor.NodeGradientModes
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.GraffitiCharts (implements de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartComponent)
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.GroupLinkProcessingMode
    • org.graffiti.editor.HashType
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.HideOrShowChildNodes.HideOrShowOperation
    • org.vanted.scaling.scalers.component.HTMLScaleSupport.Tags
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggDatabases
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.KeggNavigationToolbarCommand.Command
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.kgmlGraphicsType
    • org.LabelFrameSetting
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.LegendType
    • org.graffiti.plugins.views.defaults.Line
    • org.graffiti.editor.LoadSetting
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.LogicConnection
    • org.vanted.animation.LoopDuration
    • org.graffiti.editor.MainFrame.HideOrDeactivateMenu
    • org.graffiti.editor.MessageType
    • org.vanted.plugins.layout.multilevelframework.MlfHelper
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.ModeOfAttributeOperation
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.NodeOrEdge
    • de.ipk_gatersleben.ag_nw.graffiti.NodeSortCommand
    • org.vanted.animation.NumberOfLoops
    • org.graffiti.event.PathComparisonResult
    • org.graffiti.plugins.attributecomponents.simplelabel.Quadrant
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.ReactionType
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.RelationType (implements de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.ProvidesExplanation)
    • org.Release
    • de.ipk_gatersleben.ag_nw.graffiti.services.algorithms.SearchAlgorithms.LogicalOp
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchLogic
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOperation
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchType
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.SetLabelModeOfOperation
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SizeSetting
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SizeSettingDPIunit
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SizeSettingZoom
    • org.vanted.plugins.layout.stressminimization.StressMinParamModel.InitialLayoutOption
    • org.vanted.plugins.layout.stressminimization.StressMinParamModel.MethodOption
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.SubtypeName
    • org.graffiti.plugins.views.defaults.ThicknessAttributeEditor.ArrowHeadModes
    • de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.TtestInfo
    • org.UpdateInfoResult