Uses of Class
org.PositionGridGenerator

Packages that use PositionGridGenerator

Package	Description
de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml

Uses of PositionGridGenerator in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go with parameters of type PositionGridGenerator

Modifier and Type	Method	Description
static Node	InterpreteGOtermsAlgorithm.processGoHierarchy(PositionGridGenerator pgg, HashMap<String,Node> goTerm2goNode, GoProcessing gp, String goTerm, Graph g)
static Node	InterpreteParentGOtermsAlgorithm.processGoHierarchy(PositionGridGenerator pgg, HashMap<String,Node> goTerm2goNode, GoProcessing gp, String goTerm, Graph g)

Uses of PositionGridGenerator in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml with parameters of type PositionGridGenerator

Modifier and Type	Method	Description
void	SBML_Reaction_Reader.addReactions(Graph g, org.sbml.jsbml.ListOf<org.sbml.jsbml.Reaction> reactionList, String modelID, PositionGridGenerator pgg, SBMLReactionHelper reactionhelper)	Method reads in function definitions and is called from class SBML_XML_Reader.java.
void	SBML_Species_Reader.addSpecies(Graph g, org.sbml.jsbml.ListOf<org.sbml.jsbml.Species> speciesList, PositionGridGenerator pgg, SBMLSpeciesHelper specieshelper)	reads in species and is called from class SBML_XML_Reader.java.

Uses of PositionGridGenerator in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml

Fields in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml declared as PositionGridGenerator

Modifier and Type	Field	Description
static PositionGridGenerator	SBMLHelper._pgg

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml with parameters of type PositionGridGenerator

Modifier and Type	Method	Description
void	SBMLReactionHelper.setLabel(Node reactionNode, String name, String id, PositionGridGenerator pgg)
void	SBMLSpeciesHelper.setLabel(Node speciesNode, String name, String id, PositionGridGenerator pgg)	Sets the label of a node.
static void	SBMLHelper.setReactionLabel(Node reactionNode, String name, String id, PositionGridGenerator pgg)	Sets the attribute name of a node