Index

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _
All Classes|All Packages

D

DARK_BLUE - Static variable in class org.jfree.chart.ChartColor

A dark blue color.

DARK_CYAN - Static variable in class org.jfree.chart.ChartColor

A dark cyan color.

DARK_GREEN - Static variable in class org.jfree.chart.ChartColor

A dark green color.

DARK_MAGENTA - Static variable in class org.jfree.chart.ChartColor

A dark magenta color.

DARK_RED - Static variable in class org.jfree.chart.ChartColor

A dark red color.

DARK_YELLOW - Static variable in class org.jfree.chart.ChartColor

A dark yellow color.

Dash - Class in org.graffiti.graphics

Class that encapsulates the information needed to specify stroke properties.

Dash() - Constructor for class org.graffiti.graphics.Dash

Constructs a new Dash.

Dash(float[], float) - Constructor for class org.graffiti.graphics.Dash

Constructs a new Dash.

data - Variable in class de.ipk_gatersleben.ag_nw.graffiti.UDPreceiveStructure

DATA - org.graffiti.plugin.algorithm.Category

DATA_CARD_ACCESS - org.FeatureSet

DATA_FLAVOR - Static variable in class net.iharder.dnd.TransferableObject

The default DataFlavor for TransferableObject has the representation class net.iharder.dnd.TransferableObject.class and the MIME type application/x-net.iharder.dnd.TransferableObject.

DataBase2GUI - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.genophen

DataBase2GUI() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.genophen.DataBase2GUI

DatabaseFileStatusService - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_dbe

DatabaseFileStatusService() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_dbe.DatabaseFileStatusService

DataColumnHeader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe

Represensts a Data Column Header in the Gene Expression Excel table.

DataColumnHeader(String, int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DataColumnHeader

00emb_1 ==> time "0", location/plant "emb", replicate number "1"

DataDragAndDropHandler - Interface in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart

DataMapping - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping

DataMapping() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping.DataMapping

DataMapping(boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping.DataMapping

DATAMAPPING - org.FeatureSet

DataMapping.ShowMappingResults - Enum in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping

DataMappingId - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper

DataMappingId(int, String, String, String, String, String, String, String, Integer) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingId

DataMappingTypeManager - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper

DataMappingTypeManager() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingTypeManager

DataMappingTypeManagerInterface - Interface in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper

DataPackageResources - Class in org.jfree.data.resources

A resource bundle that stores all the items that might need localisation.

DataPackageResources() - Constructor for class org.jfree.data.resources.DataPackageResources

DataPackageResources_de - Class in org.jfree.data.resources

A resource bundle that stores all the items that might need localisation.

DataPackageResources_de() - Constructor for class org.jfree.data.resources.DataPackageResources_de

DataPackageResources_es - Class in org.jfree.data.resources

A resource bundle that stores all the items that might need localisation.

DataPackageResources_es() - Constructor for class org.jfree.data.resources.DataPackageResources_es

DataPackageResources_fr - Class in org.jfree.data.resources

A resource bundle that stores all the items that might need localisation.

DataPackageResources_fr() - Constructor for class org.jfree.data.resources.DataPackageResources_fr

DataPackageResources_pl - Class in org.jfree.data.resources

A resource bundle that stores all the items that might need localisation.

DataPackageResources_pl() - Constructor for class org.jfree.data.resources.DataPackageResources_pl

DataPackageResources_ru - Class in org.jfree.data.resources

A resource bundle that stores all the items that might need localisation.

DataPackageResources_ru() - Constructor for class org.jfree.data.resources.DataPackageResources_ru

DataRowExcelExport - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe

Holds an ordered List of ConditionInterface, SampleInterface and NumericMeasurementInterface.

DataRowExcelExport() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DataRowExcelExport

dataset - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ChartOptions

Dataset - Interface in org.jfree.data

The base interface for data sets.

DataSet - Class in qmwi.kseg.som

DataSet() - Constructor for class qmwi.kseg.som.DataSet

datasetChanged(DatasetChangeEvent) - Method in class org.jfree.chart.plot.CategoryPlot

Receives notification of a change to the plot's dataset.

datasetChanged(DatasetChangeEvent) - Method in class org.jfree.chart.plot.ContourPlot

Receives notification of a change to the plot's dataset.

datasetChanged(DatasetChangeEvent) - Method in class org.jfree.chart.plot.Plot

Receives notification of a change to the plot's dataset.

datasetChanged(DatasetChangeEvent) - Method in class org.jfree.chart.plot.PolarPlot

Receives notification of a change to the plot's m_Dataset.

datasetChanged(DatasetChangeEvent) - Method in class org.jfree.chart.plot.ThermometerPlot

Checks to see if a new value means the axis range needs adjusting.

datasetChanged(DatasetChangeEvent) - Method in class org.jfree.chart.plot.XYPlot

Receives notification of a change to the plot's dataset.

datasetChanged(DatasetChangeEvent) - Method in class org.jfree.data.CategoryToPieDataset

Passes the DatasetChangeEvent through.

datasetChanged(DatasetChangeEvent) - Method in interface org.jfree.data.DatasetChangeListener

Receives notification of an dataset change event.

datasetChanged(DatasetChangeEvent) - Method in class org.jfree.data.XYBarDataset

Receives notification of an dataset change event.

datasetChanged(DatasetChangeEvent) - Method in class org.jfree.data.XYDatasetTableModel

Notify listeners that the underlying dataset has changed.

DatasetChangeEvent - Class in org.jfree.data

A change event that encapsulates information about a change to a dataset.

DatasetChangeEvent(Object, Dataset) - Constructor for class org.jfree.data.DatasetChangeEvent

Constructs a new event.

DatasetChangeListener - Interface in org.jfree.data

The interface that must be supported by classes that wish to receive notification of changes to a dataset.

DatasetGroup - Class in org.jfree.data

A class that is used to group datasets.

DatasetGroup() - Constructor for class org.jfree.data.DatasetGroup

Constructs a new DatasetGroup.

DatasetReader - Class in org.jfree.data.xml

A utility class for reading datasets from XML.

DatasetReader() - Constructor for class org.jfree.data.xml.DatasetReader

DatasetRenderingOrder - Class in org.jfree.chart.plot

Defines the tokens that indicate the rendering order for datasets in a CategoryPlot or an XYPlot.

DataSetRow - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms

DataSetRow(String, String, String, String, String, String, String, int, String, String, int, Double, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow

DataSetTable - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms

DataSetTable() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetTable

DatasetTags - Interface in org.jfree.data.xml

Constants for the tags that identify the elements in the XML files.

DatasetUtilities - Class in org.jfree.data

A collection of useful static methods relating to datasets.

DataUtilities - Class in org.jfree.data

Utility methods for use with some of the data classes (but not the datasets, see DatasetUtilities).

DataUtilities() - Constructor for class org.jfree.data.DataUtilities

DateAxis - Class in org.jfree.chart.axis

The base class for axes that display dates.

DateAxis() - Constructor for class org.jfree.chart.axis.DateAxis

Default constructor.

DateAxis(String) - Constructor for class org.jfree.chart.axis.DateAxis

Creates a date axis.

DateAxis(String, Timeline) - Constructor for class org.jfree.chart.axis.DateAxis

Creates a date axis.

DateRange - Class in org.jfree.data

A range specified in terms of two java.util.Date objects.

DateRange() - Constructor for class org.jfree.data.DateRange

Default constructor.

DateRange(double, double) - Constructor for class org.jfree.data.DateRange

Constructs a new range using two values that will be interpreted as "milliseconds since midnight GMT, 1-Jan-1970".

DateRange(Date, Date) - Constructor for class org.jfree.data.DateRange

Constructs a new range.

DateRange(Range) - Constructor for class org.jfree.data.DateRange

Constructs a new range that is based on another Range.

DateTick - Class in org.jfree.chart.axis

A tick used by the DateAxis class.

DateTick(Date, String, TextAnchor, TextAnchor, double) - Constructor for class org.jfree.chart.axis.DateTick

Creates a new date tick.

DateTickMarkPosition - Class in org.jfree.chart.axis

Used to indicate the required position of tick marks on a date axis relative to the underlying time period.

DateTickUnit - Class in org.jfree.chart.axis

A tick unit for use by subclasses of DateAxis.

DateTickUnit(int, int) - Constructor for class org.jfree.chart.axis.DateTickUnit

Creates a new date tick unit.

DateTickUnit(int, int, int, int, DateFormat) - Constructor for class org.jfree.chart.axis.DateTickUnit

Creates a new unit.

DateTickUnit(int, int, DateFormat) - Constructor for class org.jfree.chart.axis.DateTickUnit

Creates a new date tick unit.

DateTitle - Class in org.jfree.chart.title

A chart title that displays the date.

DateTitle() - Constructor for class org.jfree.chart.title.DateTitle

Creates a new chart title that displays the current date in the default (LONG) format for the locale, positioned to the bottom right of the chart.

DateTitle(int) - Constructor for class org.jfree.chart.title.DateTitle

Creates a new chart title that displays the current date with the specified style (for the default locale).

DateTitle(int, Locale, Font, Paint) - Constructor for class org.jfree.chart.title.DateTitle

Creates a new chart title that displays the current date.

DateTitle(int, Locale, Font, Paint, RectangleEdge, HorizontalAlignment, VerticalAlignment, Spacer) - Constructor for class org.jfree.chart.title.DateTitle

Creates a new chart title that displays the current date.

dateToJava2D(Date, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.DateAxis

Translates a date to Java2D coordinates, based on the range displayed by this axis for the specified data area.

dateToString(Date) - Method in class org.jfree.chart.axis.DateTickUnit

Formats a date using the tick unit's formatter.

DavidTestAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest

Executes the David et.

DavidTestAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.DavidTestAlgorithm

DavidTestPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest

DavidTestPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.DavidTestPlugin

Day - Class in org.jfree.data.time

Represents a single day in the range 1-Jan-1900 to 31-Dec-9999.

Day() - Constructor for class org.jfree.data.time.Day

Constructs a Day, based on the system date/time.

Day(int, int, int) - Constructor for class org.jfree.data.time.Day

Constructs a new one day time period.

Day(Date) - Constructor for class org.jfree.data.time.Day

Constructs a new Day, based on a particular date/time and the default time zone.

Day(Date, TimeZone) - Constructor for class org.jfree.data.time.Day

Constructs a Day, based on a particular date/time and time zone.

Day(SerialDate) - Constructor for class org.jfree.data.time.Day

Constructs a new one day time period.

DAY - Static variable in class org.jfree.chart.axis.DateTickUnit

A constant for days.

DAY_SEGMENT_SIZE - Static variable in class org.jfree.chart.axis.SegmentedTimeline

Defines a day segment size in ms.

DBE_ACCESS - org.FeatureSet

DBE_EditorPluginAdapter - Class in de.ipk_gatersleben.ag_nw.graffiti

DBE_EditorPluginAdapter() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.DBE_EditorPluginAdapter

DBE_global_login_valid() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.PasswordDialog

DBE_GRAVISTO_NAME - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.helper.DBEgravistoHelper

DBE_GRAVISTO_NAME_SHORT - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.helper.DBEgravistoHelper

DBE_GRAVISTO_VERSION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.helper.DBEgravistoHelper

DBE_GRAVISTO_VERSION_CODE - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.helper.DBEgravistoHelper

DBE_GRAVISTO_VERSION_CODE_SUBVERSION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.helper.DBEgravistoHelper

DBE_INFORMATIONSYSTEM_NAME - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.helper.DBEgravistoHelper

DBE_MIN_COMPATIBILITY_VERSION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.helper.DBEgravistoHelper

DBE_PluginAdapter - Class in de.ipk_gatersleben.ag_nw.graffiti

DBE_PluginAdapter() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.DBE_PluginAdapter

DBEattribute - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe

DBEattribute() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.DBEattribute

dbeAttributeFolder - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.DBEattribute

DBEgravistoHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.helper

DBEgravistoHelper() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.helper.DBEgravistoHelper

DBEinputFileReader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe

DBEinputFileReader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DBEinputFileReader

DBEplugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe

DBEplugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.DBEplugin

DBEsplashScreen - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart

DBEsplashScreen(String, String, Runnable) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.DBEsplashScreen

DBGETresult - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_editing

DBGETresult(String, String, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_editing.DBGETresult

de.ipk_gatersleben.ag_nw.graffiti - package de.ipk_gatersleben.ag_nw.graffiti

de.ipk_gatersleben.ag_nw.graffiti.plugins.addons - package de.ipk_gatersleben.ag_nw.graffiti.plugins.addons

de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms - package de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms

de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.circle_search - package de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.circle_search

de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping - package de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping

de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest - package de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest

de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.exact_fisher_test - package de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.exact_fisher_test

de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation - package de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation

de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance - package de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance

Provides the HammingDistancePlugin, a plugin for computing the hamming distances between graphs.

de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.inverse_graph - package de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.inverse_graph

de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.lines_as_substances - package de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.lines_as_substances

de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder - package de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder

Provides the NaivePatternFinderPlugin, a plugin for finding given patterns within a given graph.

de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview - package de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview

de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths - package de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths

de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som - package de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som

de.ipk_gatersleben.ag_nw.graffiti.plugins.databases - package de.ipk_gatersleben.ag_nw.graffiti.plugins.databases

de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg - package de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg

de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_organisms - package de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_organisms

de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction - package de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction

de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes - package de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes

de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath - package de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath

de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.commands - package de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.commands

de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors - package de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors

de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings - package de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings

de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors - package de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors

de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image - package de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image

de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_color - package de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_color

de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings - package de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings

de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style - package de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style

de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings - package de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings

de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_editing - package de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_editing

de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type - package de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type

de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.pathway_kegg_operation - package de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.pathway_kegg_operation

de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.reaction_gui - package de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.reaction_gui

de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.relation_gui - package de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.relation_gui

de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment - package de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment

de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute - package de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute

de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute - package de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.alt_id_statistics - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.alt_id_statistics

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.hierarchies - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.hierarchies

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.kegg_reaction - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.kegg_reaction

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.hierarchy - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.hierarchy

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.url_attribute_context_commands - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.url_attribute_context_commands

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.enhanced_attribute_editors - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.enhanced_attribute_editors

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.helper - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.helper

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_dbe - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_dbe

Contains the Info Dialog for Database Editor and its helper.

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_example - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_example

Contains the Info Dialog for IPK-Cluster Analysis. Example Graffiti GUI component plug-in, which uses some deprecated artifacts.

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.launch_gui - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.launch_gui

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xlsx - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xlsx

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.genophen - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.genophen

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.special - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.special

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.startlayout - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.startlayout

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.viewcomponents - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.viewcomponents

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart

de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.zoomfit - package de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.zoomfit

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.biopax - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.biopax

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.metatool - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.metatool

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.pajek - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.pajek

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sif - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sif

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.xwg_wilma - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.xwg_wilma

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kegg_xml - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kegg_xml

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kgml - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kgml

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.pajek - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.pajek

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.petri_ina_pnt - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.petri_ina_pnt

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.gui - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.gui

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.ldap - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.ldap

de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml - package de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml

de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph - package de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph

de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle - package de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle

de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.connected_components - package de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.connected_components

de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.copy_pattern_layout - package de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.copy_pattern_layout

de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_no_overlapp - package de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_no_overlapp

de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_reduce_space - package de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_reduce_space

de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fd_edge_routing - package de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fd_edge_routing

de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fish_eye - package de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fish_eye

de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.graph_to_origin_mover - package de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.graph_to_origin_mover

de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid - package de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid

Provides the GridLayouterPlugin, a plugin for placing nodes on a grid.

de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement - package de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement

de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.no_overlapp_as_tim - package de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.no_overlapp_as_tim

de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder - package de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder

de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache - package de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache

de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands - package de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands

de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.radial_tree - package de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.radial_tree

de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.random - package de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.random

de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout - package de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout

Provides the GridLayouterPlugin, a plugin for placing nodes on a grid.

de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree - package de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree

de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.springembedder_1 - package de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.springembedder_1

de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.tree_simple - package de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.tree_simple

de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes - package de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes

de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup - package de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup

de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy - package de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy

de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection - package de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection

de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing - package de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing

de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.link_visualization_legend - package de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.link_visualization_legend

de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references - package de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references

de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.ppt_exporter - package de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.ppt_exporter

de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print - package de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print

de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.printer - package de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.printer

de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids - package de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids

de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.scripting - package de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.scripting

de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter - package de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter

de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.threading - package de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.threading

de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes - package de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes

de.ipk_gatersleben.ag_nw.graffiti.services - package de.ipk_gatersleben.ag_nw.graffiti.services

de.ipk_gatersleben.ag_nw.graffiti.services.algorithms - package de.ipk_gatersleben.ag_nw.graffiti.services.algorithms

de.ipk_gatersleben.ag_nw.graffiti.services.network - package de.ipk_gatersleben.ag_nw.graffiti.services.network

de.ipk_gatersleben.ag_nw.graffiti.services.task - package de.ipk_gatersleben.ag_nw.graffiti.services.task

de.ipk_gatersleben.ag_nw.graffiti.services.web - package de.ipk_gatersleben.ag_nw.graffiti.services.web

de.ipk_gatersleben.ag_pbi.datahandling - package de.ipk_gatersleben.ag_pbi.datahandling

deactivate() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.IPK_MegaCreateTool

deactivate() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.IPK_MegaMoveTool

deactivate() - Method in class org.graffiti.plugin.tool.AbstractTool

Classes that overwrite this method should call super.deactive first.

deactivate() - Method in interface org.graffiti.plugin.tool.Tool

Resets the state of the tool.

deactivate() - Method in class org.graffiti.plugins.modes.defaults.MegaCreateTool

This method additionaly unregisters the key used for deleting graph elements.

deactivate() - Method in class org.graffiti.plugins.modes.defaults.MegaMoveTool

This method additionaly unregisters the key used for deleting graph elements.

deactivateAddon(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.AddonManagerPlugin

deactivateAll() - Method in class org.graffiti.plugin.tool.AbstractTool

deactivateAll() - Method in interface org.graffiti.plugin.tool.Tool

DEBUG - org.Release

DEBUG - Static variable in class org.jfree.chart.demo.CompassDemo

Whether to output messages to the console

DebugFrame - Class in placement

DebugPanel - Class in placement

DebugPanel(Blocks, Constraints) - Constructor for class placement.DebugPanel

DebugSelectionCheck - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder

DebugSelectionCheck() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.DebugSelectionCheck

dec() - Method in class org.jfree.chart.axis.SegmentedTimeline.Segment

Decrements the internal attributes of this segment by one segment.

dec(long) - Method in class org.jfree.chart.axis.SegmentedTimeline.Segment

Decrements the internal attributes of this segment by a number of segments.

DECLINE - Static variable in class org.UNCFileLocationCheck

decode(byte[], int, int) - Static method in class org.graffiti.plugins.ios.exporters.graphml.Base64

Very low-level access to decoding ASCII characters in the form of a byte array.

decode(byte[], int, int) - Static method in class org.graffiti.plugins.ios.importers.graphml.parser.Base64

Very low-level access to decoding ASCII characters in the form of a byte array.

decode(String) - Static method in class org.graffiti.plugins.ios.exporters.graphml.Base64

Decodes data from Base64 notation, automatically detecting gzip-compressed data and decompressing it.

decode(String) - Static method in class org.graffiti.plugins.ios.importers.graphml.parser.Base64

Decodes data from Base64 notation, automatically detecting gzip-compressed data and decompressing it.

DECODE - Static variable in class org.graffiti.plugins.ios.exporters.graphml.Base64

Specify decoding.

DECODE - Static variable in class org.graffiti.plugins.ios.importers.graphml.parser.Base64

Specify decoding.

decodeBadCharacters(Object) - Static method in class org.graffiti.plugins.ios.exporters.gml.GMLWriter

decodeToObject(String) - Static method in class org.graffiti.plugins.ios.exporters.graphml.Base64

Attempts to decode Base64 data and deserialize a Java Object within.

decodeToObject(String) - Static method in class org.graffiti.plugins.ios.importers.graphml.parser.Base64

Attempts to decode Base64 data and deserialize a Java Object within.

DECOMPOSITION - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReaction

decreaseKey(PNode<T>, T) - Method in class placement.MinPairingHeap

Change the value of the item stored in the pairing heap.

decrypt(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe.DesEncrypter

DeepCopy - Interface in org.graffiti.core

Guarantees a deep copy.

DEFAULT_ADVANCE_LINE_PAINT - Static variable in class org.jfree.chart.axis.CyclicNumberAxis

The default axis line paint.

DEFAULT_ADVANCE_LINE_STROKE - Static variable in class org.jfree.chart.axis.CyclicNumberAxis

The default axis line stroke.

DEFAULT_ANCHOR_DATE - Static variable in class org.jfree.chart.axis.DateAxis

The default anchor date.

DEFAULT_ARROW_LENGTH - Static variable in class org.jfree.chart.annotations.XYPointerAnnotation

The default arrow length (in Java2D units).

DEFAULT_ARROW_WIDTH - Static variable in class org.jfree.chart.annotations.XYPointerAnnotation

The default arrow width (in Java2D units).

DEFAULT_AUTO_RANGE - Static variable in class org.jfree.chart.axis.ValueAxis

The default auto-range value.

DEFAULT_AUTO_RANGE_INCLUDES_ZERO - Static variable in class org.jfree.chart.axis.NumberAxis

The default value for the autoRangeIncludesZero flag.

DEFAULT_AUTO_RANGE_MINIMUM_SIZE - Static variable in class org.jfree.chart.axis.ValueAxis

The default minimum auto range.

DEFAULT_AUTO_RANGE_MINIMUM_SIZE_IN_MILLISECONDS - Static variable in class org.jfree.chart.axis.DateAxis

The default minimum auto range size.

DEFAULT_AUTO_RANGE_STICKY_ZERO - Static variable in class org.jfree.chart.axis.NumberAxis

The default value for the autoRangeStickyZero flag.

DEFAULT_AUTO_TICK_UNIT_SELECTION - Static variable in class org.jfree.chart.axis.ValueAxis

The default auto-tick-unit-selection value.

DEFAULT_AXIS_LABEL_FONT - Static variable in class org.jfree.chart.axis.Axis

The default axis label font.

DEFAULT_AXIS_LABEL_INSETS - Static variable in class org.jfree.chart.axis.Axis

The default axis label insets.

DEFAULT_AXIS_LABEL_PAINT - Static variable in class org.jfree.chart.axis.Axis

The default axis label paint.

DEFAULT_AXIS_LINE_PAINT - Static variable in class org.jfree.chart.axis.Axis

The default axis line paint.

DEFAULT_AXIS_LINE_STROKE - Static variable in class org.jfree.chart.axis.Axis

The default axis line stroke.

DEFAULT_AXIS_MARGIN - Static variable in class org.jfree.chart.axis.CategoryAxis

The default margin for the axis (used for both lower and upper margins).

DEFAULT_AXIS_VISIBLE - Static variable in class org.jfree.chart.axis.Axis

The default axis visibility.

DEFAULT_BACKGROUND_ALPHA - Static variable in class org.jfree.chart.plot.Plot

The default background alpha transparency.

DEFAULT_BACKGROUND_IMAGE - Static variable in class org.jfree.chart.JFreeChart

The default background image.

DEFAULT_BACKGROUND_IMAGE_ALIGNMENT - Static variable in class org.jfree.chart.JFreeChart

The default background image alignment.

DEFAULT_BACKGROUND_IMAGE_ALPHA - Static variable in class org.jfree.chart.JFreeChart

The default background image alpha.

DEFAULT_BACKGROUND_PAINT - Static variable in class org.jfree.chart.JFreeChart

The default background color.

DEFAULT_BACKGROUND_PAINT - Static variable in class org.jfree.chart.plot.MeterPlot

The default background color.

DEFAULT_BACKGROUND_PAINT - Static variable in class org.jfree.chart.plot.Plot

The default background color.

DEFAULT_BACKGROUND_PAINT - Static variable in class org.jfree.chart.StandardLegend

The default background paint.

DEFAULT_BASE_RADIUS - Static variable in class org.jfree.chart.annotations.XYPointerAnnotation

The default base radius (in Java2D units).

DEFAULT_BORDER_SIZE - Static variable in class org.jfree.chart.plot.MeterPlot

The default border size.

DEFAULT_BUFFER_USED - Static variable in interface org.jfree.chart.ChartPanelConstants

Default setting for buffer usage.

DEFAULT_CAP_B - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants

DEFAULT_CAP_R - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants

The cap used by default.

DEFAULT_CATEGORY_MARGIN - Static variable in class org.jfree.chart.axis.CategoryAxis

The default margin between categories (a percentage of the overall axis length).

DEFAULT_CIRCLE_SIZE - Static variable in class org.jfree.chart.plot.MeterPlot

The default circle size.

DEFAULT_COLORBAR_THICKNESS - Static variable in class org.jfree.chart.axis.ColorBar

The default color bar thickness.

DEFAULT_COLORBAR_THICKNESS_PERCENT - Static variable in class org.jfree.chart.axis.ColorBar

The default color bar thickness percentage.

DEFAULT_CROSSHAIR_PAINT - Static variable in class org.jfree.chart.plot.WaferMapPlot

The default crosshair paint.

DEFAULT_CROSSHAIR_PAINT - Static variable in class org.jfree.chart.plot.XYPlot

The default crosshair paint.

DEFAULT_CROSSHAIR_STROKE - Static variable in class org.jfree.chart.plot.WaferMapPlot

The default crosshair stroke.

DEFAULT_CROSSHAIR_STROKE - Static variable in class org.jfree.chart.plot.XYPlot

The default crosshair stroke.

DEFAULT_CROSSHAIR_VISIBLE - Static variable in class org.jfree.chart.plot.WaferMapPlot

The default crosshair visibility.

DEFAULT_CROSSHAIR_VISIBLE - Static variable in class org.jfree.chart.plot.XYPlot

The default crosshair visibility.

DEFAULT_DATE_RANGE - Static variable in class org.jfree.chart.axis.DateAxis

The default axis range.

DEFAULT_DATE_TICK_UNIT - Static variable in class org.jfree.chart.axis.DateAxis

The default date tick unit.

DEFAULT_DOMAIN_GRIDLINES_VISIBLE - Static variable in class org.jfree.chart.plot.CategoryPlot

The default visibility of the grid lines plotted against the domain axis.

DEFAULT_FONT - Static variable in class org.jfree.chart.annotations.TextAnnotation

The default font.

DEFAULT_FONT - Static variable in class org.jfree.chart.title.TextTitle

The default font.

DEFAULT_FOREGROUND_ALPHA - Static variable in class org.jfree.chart.plot.Plot

The default foreground alpha transparency.

DEFAULT_GAP - Static variable in class info.clearthought.layout.SingleFiledLayout

Default gap -- derived classes may override

DEFAULT_GRIDLINE_PAINT - Static variable in class org.jfree.chart.plot.CategoryPlot

The default grid line paint.

DEFAULT_GRIDLINE_PAINT - Static variable in class org.jfree.chart.plot.FastScatterPlot

The default grid line paint.

DEFAULT_GRIDLINE_PAINT - Static variable in class org.jfree.chart.plot.PolarPlot

The default grid line paint.

DEFAULT_GRIDLINE_PAINT - Static variable in class org.jfree.chart.plot.WaferMapPlot

The default grid line paint.

DEFAULT_GRIDLINE_PAINT - Static variable in class org.jfree.chart.plot.XYPlot

The default grid line paint.

DEFAULT_GRIDLINE_STROKE - Static variable in class org.jfree.chart.plot.CategoryPlot

The default grid line stroke.

DEFAULT_GRIDLINE_STROKE - Static variable in class org.jfree.chart.plot.FastScatterPlot

The default grid line stroke.

DEFAULT_GRIDLINE_STROKE - Static variable in class org.jfree.chart.plot.PolarPlot

The default grid line stroke.

DEFAULT_GRIDLINE_STROKE - Static variable in class org.jfree.chart.plot.WaferMapPlot

The default grid line stroke.

DEFAULT_GRIDLINE_STROKE - Static variable in class org.jfree.chart.plot.XYPlot

The default grid line stroke.

DEFAULT_HEIGHT - Static variable in interface org.jfree.chart.ChartPanelConstants

The default panel height.

DEFAULT_HORIZONTAL_ALIGNMENT - Static variable in class org.jfree.chart.title.Title

The default horizontal alignment.

DEFAULT_INNER_GAP - Static variable in class org.jfree.chart.StandardLegend

The default inner gap.

DEFAULT_INSETS - Static variable in class org.jfree.chart.plot.Plot

The default insets.

DEFAULT_INTERIOR_GAP - Static variable in class org.jfree.chart.plot.PiePlot

The default interior gap.

DEFAULT_INVERTED - Static variable in class org.jfree.chart.axis.ValueAxis

The default inverted flag setting.

DEFAULT_ITEM_FONT - Static variable in class org.jfree.chart.StandardLegend

The default item font.

DEFAULT_ITEM_LABEL_FORMAT - Static variable in class org.jfree.chart.labels.StandardXYLabelGenerator

The default item label format.

DEFAULT_ITEM_MARGIN - Static variable in class org.jfree.chart.renderer.BarRenderer

The default item margin percentage.

DEFAULT_ITEM_MARGIN - Static variable in class org.jfree.chart.renderer.LevelRenderer

The default item margin percentage.

DEFAULT_JOIN - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants

The join used by default.

DEFAULT_LABEL_BACKGROUND_PAINT - Static variable in class org.jfree.chart.plot.PiePlot

The default section label background paint.

DEFAULT_LABEL_FONT - Static variable in class org.jfree.chart.plot.CompassPlot

The default label font.

DEFAULT_LABEL_FONT - Static variable in class org.jfree.chart.plot.MeterPlot

The default label font.

DEFAULT_LABEL_FONT - Static variable in class org.jfree.chart.plot.PiePlot

The default section label font.

DEFAULT_LABEL_FORMAT_STRING - Static variable in class org.jfree.chart.labels.IntervalCategoryLabelGenerator

The default format string.

DEFAULT_LABEL_FORMAT_STRING - Static variable in class org.jfree.chart.labels.StandardCategoryLabelGenerator

The default format string.

DEFAULT_LABEL_OFFSET - Static variable in class org.jfree.chart.annotations.XYPointerAnnotation

The default label offset (in Java2D units).

DEFAULT_LABEL_OUTLINE_PAINT - Static variable in class org.jfree.chart.plot.PiePlot

The default section label outline paint.

DEFAULT_LABEL_OUTLINE_STROKE - Static variable in class org.jfree.chart.plot.PiePlot

The default section label outline stroke.

DEFAULT_LABEL_PAINT - Static variable in class org.jfree.chart.plot.PiePlot

The default section label paint.

DEFAULT_LABEL_SHADOW_PAINT - Static variable in class org.jfree.chart.plot.PiePlot

The default section label shadow paint.

DEFAULT_LOWER_BOUND - Static variable in class org.jfree.chart.axis.ValueAxis

The default lower bound for the axis.

DEFAULT_LOWER_MARGIN - Static variable in class org.jfree.chart.axis.ValueAxis

The default value for the lower margin (0.05 = 5%).

DEFAULT_MAXIMUM_DRAW_HEIGHT - Static variable in interface org.jfree.chart.ChartPanelConstants

The default limit below which chart scaling kicks in.

DEFAULT_MAXIMUM_DRAW_WIDTH - Static variable in interface org.jfree.chart.ChartPanelConstants

The default limit below which chart scaling kicks in.

DEFAULT_METER_ANGLE - Static variable in class org.jfree.chart.plot.MeterPlot

The default meter angle.

DEFAULT_MINIMUM_ARC_ANGLE_TO_DRAW - Static variable in class org.jfree.chart.plot.PiePlot

The default minimum arc angle to draw.

DEFAULT_MINIMUM_DRAW_HEIGHT - Static variable in interface org.jfree.chart.ChartPanelConstants

The default limit below which chart scaling kicks in.

DEFAULT_MINIMUM_DRAW_WIDTH - Static variable in interface org.jfree.chart.ChartPanelConstants

The default limit below which chart scaling kicks in.

DEFAULT_MITER - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants

The miter limit used by default.

DEFAULT_OUTER_GAP - Static variable in class org.jfree.chart.StandardLegend

The default outer gap.

DEFAULT_OUTERGAP - Static variable in class org.jfree.chart.axis.ColorBar

The default outer gap.

DEFAULT_OUTLINE_PAINT - Static variable in class org.jfree.chart.plot.Plot

The default outline color.

DEFAULT_OUTLINE_PAINT - Static variable in class org.jfree.chart.renderer.AbstractRenderer

The default outline paint.

DEFAULT_OUTLINE_PAINT - Static variable in class org.jfree.chart.StandardLegend

The default outline paint.

DEFAULT_OUTLINE_PAINT_SEQUENCE - Static variable in class org.jfree.chart.plot.DefaultDrawingSupplier

The default outline paint sequence.

DEFAULT_OUTLINE_STROKE - Static variable in class org.jfree.chart.plot.Plot

The default outline stroke.

DEFAULT_OUTLINE_STROKE - Static variable in class org.jfree.chart.renderer.AbstractRenderer

The default outline stroke.

DEFAULT_OUTLINE_STROKE - Static variable in class org.jfree.chart.StandardLegend

The default outline stroke.

DEFAULT_OUTLINE_STROKE_SEQUENCE - Static variable in class org.jfree.chart.plot.DefaultDrawingSupplier

The default outline stroke sequence.

DEFAULT_PAINT - Static variable in class org.jfree.chart.annotations.TextAnnotation

The default paint.

DEFAULT_PAINT - Static variable in class org.jfree.chart.renderer.AbstractRenderer

The default paint.

DEFAULT_PAINT_SEQUENCE - Static variable in class org.jfree.chart.plot.DefaultDrawingSupplier

The default fill paint sequence.

DEFAULT_POSITION - Static variable in class org.jfree.chart.title.Title

The default title position.

DEFAULT_RANGE - Static variable in class org.jfree.chart.axis.ValueAxis

The default axis range.

DEFAULT_RANGE_GRIDLINES_VISIBLE - Static variable in class org.jfree.chart.plot.CategoryPlot

The default visibility of the grid lines plotted against the range axis.

DEFAULT_ROTATION_ANCHOR - Static variable in class org.jfree.chart.annotations.TextAnnotation

The default rotation anchor.

DEFAULT_ROTATION_ANGLE - Static variable in class org.jfree.chart.annotations.TextAnnotation

The default rotation angle.

DEFAULT_SCALE_FACTOR - Static variable in class org.jfree.data.NormalizedMatrixSeries

The default scale factor.

DEFAULT_SECTION_LABEL_FORMAT - Static variable in class org.jfree.chart.labels.StandardPieItemLabelGenerator

The default section label format.

DEFAULT_SHAPE - Static variable in class org.jfree.chart.renderer.AbstractRenderer

The default shape.

DEFAULT_SHAPE_SEQUENCE - Static variable in class org.jfree.chart.plot.DefaultDrawingSupplier

The default shape sequence.

DEFAULT_SPACER - Static variable in class org.jfree.chart.title.Title

Default title spacer.

DEFAULT_START_ANGLE - Static variable in class org.jfree.chart.plot.PiePlot

The default starting angle for the pie chart.

DEFAULT_STROKE - Static variable in class org.jfree.chart.renderer.AbstractRenderer

The default stroke.

DEFAULT_STROKE_SEQUENCE - Static variable in class org.jfree.chart.plot.DefaultDrawingSupplier

The default stroke sequence.

DEFAULT_SYMBOLIC_GRID_LINE_PAINT - Static variable in class org.jfree.chart.axis.SymbolicAxis

The default symbolic grid line paint.

DEFAULT_TEXT_ANCHOR - Static variable in class org.jfree.chart.annotations.TextAnnotation

The default text anchor.

DEFAULT_TEXT_PAINT - Static variable in class org.jfree.chart.title.TextTitle

The default text color.

DEFAULT_TICK_LABEL_FONT - Static variable in class org.jfree.chart.axis.Axis

The default tick label font.

DEFAULT_TICK_LABEL_INSETS - Static variable in class org.jfree.chart.axis.Axis

The default tick label insets.

DEFAULT_TICK_LABEL_PAINT - Static variable in class org.jfree.chart.axis.Axis

The default tick label paint.

DEFAULT_TICK_LABELS_VISIBLE - Static variable in class org.jfree.chart.axis.Axis

The default tick labels visibility.

DEFAULT_TICK_MARK_INSIDE_LENGTH - Static variable in class org.jfree.chart.axis.Axis

The default tick mark inside length.

DEFAULT_TICK_MARK_OUTSIDE_LENGTH - Static variable in class org.jfree.chart.axis.Axis

The default tick mark outside length.

DEFAULT_TICK_MARK_PAINT - Static variable in class org.jfree.chart.axis.Axis

The default tick paint.

DEFAULT_TICK_MARK_STROKE - Static variable in class org.jfree.chart.axis.Axis

The default tick stroke.

DEFAULT_TICK_MARKS_VISIBLE - Static variable in class org.jfree.chart.axis.Axis

The default tick marks visible.

DEFAULT_TICK_UNIT - Static variable in class org.jfree.chart.axis.NumberAxis

The default tick unit.

DEFAULT_TIME_ZONE - Static variable in class org.jfree.chart.axis.SegmentedTimeline

This is the default time zone where the application is running.

DEFAULT_TIME_ZONE - Static variable in class org.jfree.data.time.RegularTimePeriod

The default time zone.

DEFAULT_TIP_RADIUS - Static variable in class org.jfree.chart.annotations.XYPointerAnnotation

The default tip radius (in Java2D units).

DEFAULT_TITLE_FONT - Static variable in class org.jfree.chart.JFreeChart

The default font for titles.

DEFAULT_TITLE_FONT - Static variable in class org.jfree.chart.StandardLegend

The default title font.

DEFAULT_TOOL_TIP_FORMAT - Static variable in class org.jfree.chart.labels.BoxAndWhiskerToolTipGenerator

The default tooltip format string.

DEFAULT_TOOL_TIP_FORMAT - Static variable in class org.jfree.chart.labels.BoxAndWhiskerXYToolTipGenerator

The default tooltip format string.

DEFAULT_TOOL_TIP_FORMAT - Static variable in class org.jfree.chart.labels.StandardXYToolTipGenerator

The default tooltip format.

DEFAULT_TOOL_TIP_FORMAT - Static variable in class org.jfree.chart.labels.StandardXYZToolTipGenerator

The default tooltip format.

DEFAULT_TOOL_TIP_FORMAT_STRING - Static variable in class org.jfree.chart.labels.IntervalCategoryToolTipGenerator

The default format string.

DEFAULT_TOOL_TIP_FORMAT_STRING - Static variable in class org.jfree.chart.labels.StandardCategoryToolTipGenerator

The default format string.

DEFAULT_TOOLTIP_FORMAT - Static variable in class org.jfree.chart.labels.StandardPieItemLabelGenerator

The default tooltip format.

DEFAULT_UPPER_BOUND - Static variable in class org.jfree.chart.axis.ValueAxis

The default upper bound for the axis.

DEFAULT_UPPER_MARGIN - Static variable in class org.jfree.chart.axis.ValueAxis

The default value for the upper margin (0.05 = 5%).

DEFAULT_VALUE_LABEL_FONT - Static variable in class org.jfree.chart.plot.CategoryPlot

The default value label font.

DEFAULT_VALUE_LABEL_FONT - Static variable in class org.jfree.chart.renderer.AbstractRenderer

The default value label font.

DEFAULT_VALUE_LABEL_PAINT - Static variable in class org.jfree.chart.renderer.AbstractRenderer

The default value label paint.

DEFAULT_VERTICAL_ALIGNMENT - Static variable in class org.jfree.chart.title.Title

The default vertical alignment.

DEFAULT_VERTICAL_TICK_LABELS - Static variable in class org.jfree.chart.axis.NumberAxis

The default setting for the vertical tick labels flag.

DEFAULT_WALL_PAINT - Static variable in class org.jfree.chart.renderer.BarRenderer3D

The default wall paint.

DEFAULT_WIDTH - Static variable in class org.graffiti.plugins.inspectors.defaults.Inspector

The default width of the inspector components.

DEFAULT_WIDTH - Static variable in interface org.jfree.chart.ChartPanelConstants

The default panel width.

DEFAULT_X_OFFSET - Static variable in class org.jfree.chart.renderer.BarRenderer3D

The default x-offset for the 3D effect.

DEFAULT_Y_OFFSET - Static variable in class org.jfree.chart.renderer.BarRenderer3D

The default y-offset for the 3D effect.

DEFAULT_ZOOM_TRIGGER_DISTANCE - Static variable in interface org.jfree.chart.ChartPanelConstants

The minimum size required to perform a zoom on a rectangle

DefaultAlgorithmManager - Class in org.graffiti.managers

Manages the map of available algorithms: key = algorithm class names, value = algorithm

DefaultAlgorithmManager() - Constructor for class org.graffiti.managers.DefaultAlgorithmManager

Constructs a new algorithm manager.

DefaultAlgorithmResult - Class in org.graffiti.plugin.algorithm

DOCUMENT ME!

DefaultAlgorithmResult() - Constructor for class org.graffiti.plugin.algorithm.DefaultAlgorithmResult

Constructor for DefaultAlgorithmResult.

DefaultAlgorithmResult(Map<String, Object>) - Constructor for class org.graffiti.plugin.algorithm.DefaultAlgorithmResult

Constructor for DefaultAlgorithmResult.

DefaultBoxAndWhiskerCategoryDataset - Class in org.jfree.data.statistics

A convenience class that provides a default implementation of the BoxAndWhiskerCategoryDataset interface.

DefaultBoxAndWhiskerCategoryDataset() - Constructor for class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Creates a new dataset.

DefaultBoxAndWhiskerXYDataset - Class in org.jfree.data.statistics

A simple implementation of the BoxAndWhiskerXYDataset.

DefaultBoxAndWhiskerXYDataset(String) - Constructor for class org.jfree.data.statistics.DefaultBoxAndWhiskerXYDataset

Constructs a new box and whisker dataset.

DefaultCategoryDataset - Class in org.jfree.data

A default implementation of the CategoryDataset interface.

DefaultCategoryDataset() - Constructor for class org.jfree.data.DefaultCategoryDataset

Creates a new (empty) dataset.

DefaultCategoryItemRenderer - Class in org.jfree.chart.renderer

A default renderer for the CategoryPlot class.

DefaultCategoryItemRenderer() - Constructor for class org.jfree.chart.renderer.DefaultCategoryItemRenderer

DefaultContextMenuManager - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools

This is the default context menu manager, that is used by the enhanced editing tools for displaying a context menu.

DefaultContextMenuManager() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.DefaultContextMenuManager

DefaultContourDataset - Class in org.jfree.data

A convenience class that provides a default implementation of the ContourDataset interface.

DefaultContourDataset() - Constructor for class org.jfree.data.DefaultContourDataset

Creates a new dataset, initially empty.

DefaultContourDataset(String, Object[], Object[], Object[]) - Constructor for class org.jfree.data.DefaultContourDataset

Constructs a new dataset with the given data.

DefaultDrawingSupplier - Class in org.jfree.chart.plot

A default implementation of the DrawingSupplier interface.

DefaultDrawingSupplier() - Constructor for class org.jfree.chart.plot.DefaultDrawingSupplier

Creates a new supplier, with default sequences for fill paint, outline paint, stroke and shapes.

DefaultDrawingSupplier(Paint[], Paint[], Stroke[], Stroke[], Shape[]) - Constructor for class org.jfree.chart.plot.DefaultDrawingSupplier

Creates a new supplier.

defaultDrawItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyLineAndShapeRenderer

DefaultEditMode - Class in org.graffiti.plugins.modes.defaultEditMode

DefaultEditMode() - Constructor for class org.graffiti.plugins.modes.defaultEditMode.DefaultEditMode

DefaultEditModePlugin - Class in org.graffiti.plugins.modes.defaultEditMode

DefaultEditModePlugin() - Constructor for class org.graffiti.plugins.modes.defaultEditMode.DefaultEditModePlugin

DefaultEditPanel - Class in org.graffiti.plugins.inspectors.defaults

Represents the edit panel in the inspector.

DefaultEditPanel(String) - Constructor for class org.graffiti.plugins.inspectors.defaults.DefaultEditPanel

Instantiates a new edit panel.

DefaultHighLowDataset - Class in org.jfree.data

A simple implementation of the HighLowDataset.

DefaultHighLowDataset(String, Date[], double[], double[], double[], double[], double[]) - Constructor for class org.jfree.data.DefaultHighLowDataset

Constructs a new high/low/open/close dataset.

DefaultIntervalCategoryDataset - Class in org.jfree.data

A convenience class that provides a default implementation of the IntervalCategoryDataset interface.

DefaultIntervalCategoryDataset(double[][], double[][]) - Constructor for class org.jfree.data.DefaultIntervalCategoryDataset

Creates a new dataset.

DefaultIntervalCategoryDataset(Comparable[], Comparable[], Number[][], Number[][]) - Constructor for class org.jfree.data.DefaultIntervalCategoryDataset

Constructs a DefaultIntervalCategoryDataset, populates it with data from the arrays, and uses the supplied names for the series and the supplied objects for the categories.

DefaultIntervalCategoryDataset(Number[][], Number[][]) - Constructor for class org.jfree.data.DefaultIntervalCategoryDataset

Constructs a dataset and populates it with data from the array.

DefaultIntervalCategoryDataset(String[], Number[][], Number[][]) - Constructor for class org.jfree.data.DefaultIntervalCategoryDataset

Constructs a DefaultIntervalCategoryDataset, populates it with data from the arrays, and uses the supplied names for the series.

DefaultIOManager - Class in org.graffiti.managers

Handles the editor's IO serializers.

DefaultIOManager() - Constructor for class org.graffiti.managers.DefaultIOManager

Constructs a new io manager.

DefaultKeyedValue - Class in org.jfree.data

A (key, value) pair.

DefaultKeyedValue(Comparable, Number) - Constructor for class org.jfree.data.DefaultKeyedValue

Creates a new (key, value) pair.

DefaultKeyedValueDataset - Class in org.jfree.data

A default implementation of the KeyedValueDataset interface.

DefaultKeyedValueDataset() - Constructor for class org.jfree.data.DefaultKeyedValueDataset

Constructs a new dataset, initially empty.

DefaultKeyedValueDataset(Comparable, Number) - Constructor for class org.jfree.data.DefaultKeyedValueDataset

Creates a new dataset with the specified initial value.

DefaultKeyedValueDataset(KeyedValue) - Constructor for class org.jfree.data.DefaultKeyedValueDataset

Creates a new dataset that uses the data from a KeyedValue instance.

DefaultKeyedValues - Class in org.jfree.data

A collection of (key, value) pairs.

DefaultKeyedValues() - Constructor for class org.jfree.data.DefaultKeyedValues

Creates a new collection (initially empty).

DefaultKeyedValues2D - Class in org.jfree.data

A data structure that stores zero, one or many values, where each value is associated with two keys (a 'row' key and a 'column' key).

DefaultKeyedValues2D() - Constructor for class org.jfree.data.DefaultKeyedValues2D

Creates a new instance (initially empty).

DefaultKeyedValues2D(boolean) - Constructor for class org.jfree.data.DefaultKeyedValues2D

Creates a new instance (initially empty).

DefaultKeyedValues2DDataset - Class in org.jfree.data

A default implementation of the KeyedValues2DDataset interface.

DefaultKeyedValues2DDataset() - Constructor for class org.jfree.data.DefaultKeyedValues2DDataset

DefaultKeyedValuesDataset - Class in org.jfree.data

A default implementation of the KeyedValuesDataset interface.

DefaultKeyedValuesDataset() - Constructor for class org.jfree.data.DefaultKeyedValuesDataset

DefaultMeterDataset - Class in org.jfree.data

Deprecated.

Use ValueDataset instead, this interface mixes data and presentation items.

DefaultMeterDataset() - Constructor for class org.jfree.data.DefaultMeterDataset

Deprecated.

Default constructor.

DefaultMeterDataset(Number, Number, Number, String) - Constructor for class org.jfree.data.DefaultMeterDataset

Deprecated.

Creates a new dataset.

DefaultMeterDataset(Number, Number, Number, String, Number, Number, Number, Number, Number, Number, int) - Constructor for class org.jfree.data.DefaultMeterDataset

Deprecated.

Creates a new dataset.

DefaultModeManager - Class in org.graffiti.managers

Handles the editor's modes.

DefaultModeManager() - Constructor for class org.graffiti.managers.DefaultModeManager

Constructs a new mode manager.

DefaultPageable - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print

Default pageable implementation

DefaultPageable(Printable, PageFormat, int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.DefaultPageable

DefaultParameterDialog - Class in org.graffiti.editor.dialog

The default implementation of a parameter dialog.

DefaultParameterDialog(EditComponentManager, Component, Parameter[], Selection, String, Object) - Constructor for class org.graffiti.editor.dialog.DefaultParameterDialog

Constructor for DefaultParameterDialog.

DefaultParameterDialog(EditComponentManager, Component, Parameter[], Selection, String, Object, boolean, boolean, boolean) - Constructor for class org.graffiti.editor.dialog.DefaultParameterDialog

DefaultParameterDialog(EditComponentManager, Component, Parameter[], Selection, String, Object, JComponent, boolean) - Constructor for class org.graffiti.editor.dialog.DefaultParameterDialog

DefaultParameterDialog(EditComponentManager, Component, Parameter[], Selection, String, Object, JComponent, boolean, boolean, boolean, String) - Constructor for class org.graffiti.editor.dialog.DefaultParameterDialog

DefaultParameterDialog(EditComponentManager, Component, Parameter[], Selection, String, Object, JComponent, boolean, boolean, boolean, String, boolean) - Constructor for class org.graffiti.editor.dialog.DefaultParameterDialog

DefaultPieDataset - Class in org.jfree.data

A default implementation of the PieDataset interface.

DefaultPieDataset() - Constructor for class org.jfree.data.DefaultPieDataset

Constructs a new dataset, initially empty.

DefaultPieDataset(KeyedValues) - Constructor for class org.jfree.data.DefaultPieDataset

Creates a new dataset that uses the data from a KeyedValues instance.

DefaultPluginEntry - Class in org.graffiti.managers.pluginmgr

Represents a plugin entry in the plugin manager.

DefaultPluginEntry(String, PluginDescription) - Constructor for class org.graffiti.managers.pluginmgr.DefaultPluginEntry

Constructs a new plugin entry.

DefaultPluginEntry(PluginDescription, GenericPlugin, Boolean, URL) - Constructor for class org.graffiti.managers.pluginmgr.DefaultPluginEntry

Constructs a new plugin entry.

DefaultPluginManager - Class in org.graffiti.managers.pluginmgr

Manages the list of plugins.

DefaultPluginManager(Preferences) - Constructor for class org.graffiti.managers.pluginmgr.DefaultPluginManager

Constructs a new PluginManger instance.

DefaultPolarItemRenderer - Class in org.jfree.chart.renderer

A renderer that can be used with the PolarPlot class.

DefaultPolarItemRenderer() - Constructor for class org.jfree.chart.renderer.DefaultPolarItemRenderer

Creates a new instance of DefaultPolarItemRenderer

DefaultShapeFactory - Class in org.jfree.chart

Deprecated.

No longer used. Shapes are supplied by the DrawingSupplier if necessary.

DefaultShapeFactory() - Constructor for class org.jfree.chart.DefaultShapeFactory

Deprecated.

DefaultStatisticalCategoryDataset - Class in org.jfree.data.statistics

A convenience class that provides a default implementation of the StatisticalCategoryDataset interface.

DefaultStatisticalCategoryDataset() - Constructor for class org.jfree.data.statistics.DefaultStatisticalCategoryDataset

Creates a new dataset.

DefaultTableXYDataset - Class in org.jfree.data

An XYDataset where every series shares the same x-values (required for generating stacked area charts).

DefaultTableXYDataset() - Constructor for class org.jfree.data.DefaultTableXYDataset

Creates a new empty dataset.

DefaultTableXYDataset(boolean) - Constructor for class org.jfree.data.DefaultTableXYDataset

Creates a new empty dataset.

DefaultTableXYDataset(XYSeries) - Constructor for class org.jfree.data.DefaultTableXYDataset

Deprecated.

Use regular constructor then add series.

DefaultToolManager - Class in org.graffiti.managers

Manages the list of tools.

DefaultToolManager(ModeManager) - Constructor for class org.graffiti.managers.DefaultToolManager

Constructs a new tool manager.

DefaultURLattributeActionManager - Class in org.graffiti.managers

DefaultURLattributeActionManager() - Constructor for class org.graffiti.managers.DefaultURLattributeActionManager

DefaultValueDataset - Class in org.jfree.data

A default implementation of the ValueDataset interface.

DefaultValueDataset() - Constructor for class org.jfree.data.DefaultValueDataset

Constructs a new dataset, initially empty.

DefaultValueDataset(double) - Constructor for class org.jfree.data.DefaultValueDataset

Creates a new dataset.

DefaultValueDataset(Number) - Constructor for class org.jfree.data.DefaultValueDataset

Creates a new dataset.

DefaultView - Class in org.graffiti.plugins.views.defaults

PlugIn for default view of graffiti graph editor

DefaultView() - Constructor for class org.graffiti.plugins.views.defaults.DefaultView

Constructor for DefaultView.

DefaultViewManager - Class in org.graffiti.managers

Manages a list of view types.

DefaultViewManager() - Constructor for class org.graffiti.managers.DefaultViewManager

Constructs a new view manager.

DefaultWindDataset - Class in org.jfree.data

A default implementation of the WindDataset interface.

DefaultWindDataset() - Constructor for class org.jfree.data.DefaultWindDataset

Constructs a new, empty, dataset.

DefaultWindDataset(Object[][][]) - Constructor for class org.jfree.data.DefaultWindDataset

Constructs a dataset based on the specified data.

DefaultWindDataset(String[], Object[][][]) - Constructor for class org.jfree.data.DefaultWindDataset

Constructs a dataset based on the specified data.

DefaultWindDataset(List, Object[][][]) - Constructor for class org.jfree.data.DefaultWindDataset

Constructs a dataset based on the specified data.

DefaultXYItemRenderer - Class in org.jfree.chart.renderer

A default renderer for the XYPlot class.

DefaultXYItemRenderer() - Constructor for class org.jfree.chart.renderer.DefaultXYItemRenderer

defineConnRef(Router, View, Edge, int) - Static method in class org.vanted.plugins.layout.adaptagrams.edgerouting.AdaptagramsRouting

Defines a ConnRef for an edge.

defineConnRef(Router, View, Edge, int, int, int) - Static method in class org.vanted.plugins.layout.adaptagrams.edgerouting.AdaptagramsRouting

Defines a ConnRef for an edge.

defineConnRef(Router, View, Edge, int, int, int, AvoidCheckpoints) - Static method in class org.vanted.plugins.layout.adaptagrams.edgerouting.AdaptagramsRouting

Defines a ConnRef for an edge.

defineConnRef(Router, View, Edge, int, AvoidCheckpoints) - Static method in class org.vanted.plugins.layout.adaptagrams.edgerouting.AdaptagramsRouting

Defines a ConnRef for an edge.

defineShapeRef(Router, View, Node) - Static method in class org.vanted.plugins.layout.adaptagrams.edgerouting.AdaptagramsRouting

Defines a ShapeRef for a node.

DELAY_ANNOTATION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants

DELAY_FUNCTION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants

DELAY_META_ID - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants

DELAY_NON_RDF_ANNOTATION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants

DELAY_NOTES - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants

DELAY_SBOTERM - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants

DelayThread - Class in org.graffiti.util

This delay thread will help prevent too many calls in short time by catching the calls and only giving the last stored event after a short period of time to the actual event handler using a callback mechanism If it has delivered the event it will trigger "wait" and halt the thread A new event will then wake up the thread.

DelayThread(DelayThread.DelayedCallback) - Constructor for class org.graffiti.util.DelayThread

DelayThread.DelayedCallback - Interface in org.graffiti.util

This callback interface is used by the DelayThread Implementing classes can set the method to be called

delete() - Method in class placement.Constraint

remove all traces of c

delete(int, int) - Method in class org.jfree.data.time.TimePeriodValues

Deletes data from start until end index (end inclusive).

delete(int, int) - Method in class org.jfree.data.time.TimeSeries

Deletes data from start until end index (end inclusive).

delete(int, int) - Method in class org.jfree.data.XYSeries

Deletes a range of items from the series and sends a SeriesChangeEvent to all registered listeners.

delete(List<GraphElement>) - Method in interface org.graffiti.plugins.modes.defaults.DeleteAction

delete(RegularTimePeriod) - Method in class org.jfree.data.time.TimeSeries

Deletes the data item for the given time period and sends a SeriesChangeEvent to all registered listeners.

DeleteAction - Class in org.graffiti.editor.actions

Represents a graph element delete action.

DeleteAction - Interface in org.graffiti.plugins.modes.defaults

DeleteAction(MainFrame) - Constructor for class org.graffiti.editor.actions.DeleteAction

Constructs a new copy action.

deleteAlgebraicRule(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteAlgebraicRuleFunction(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteAll(Collection<? extends GraphElement>) - Method in class org.graffiti.graph.AdjListGraph

deleteAll(Collection<? extends GraphElement>) - Method in interface org.graffiti.graph.Graph

deleteAnnotation(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.KineticLawHelper

deleteAnnotation(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter

deleteAnnotation(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

deleteAnnotation(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper

deleteAnnotationModifier(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

deleteAnnotationProduct(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

deleteAnnotationReactant(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

deleteAssignmentRule(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteAssignmentRuleFunction(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteAssignmentRuleVariable(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteAttribute(Attributable, String, String) - Static method in class org.AttributeHelper

Removes a single attribute or a number of attributes from the Attributable.

DeleteAttributeAction - Class in org.graffiti.editor.actions

DOCUMENT ME!

DeleteAttributeAction(MainFrame) - Constructor for class org.graffiti.editor.actions.DeleteAttributeAction

Constructs a new delete attribute action.

deleteColumn(int) - Method in class info.clearthought.layout.TableLayout

Deletes a column in this layout.

deleteCompartment(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteCompartmentConstant(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteCompartmentID(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteCompartmentName(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteCompartmentSize(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteCompartmentSpatialDimensions(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteCompartmentUnits(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteConstant(Edge) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteConstraint(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteConstraintMessage(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

DELETED - org.graffiti.event.AbstractEvent.EVENTTYPE

deleteDelayFunction(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteDirRecursively(File) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.FileHelper

Recursively deletes a directory

deleteEdge(Edge) - Method in class org.graffiti.graph.AbstractGraph

Deletes the given edge from the current graph.

deleteEdge(Edge) - Method in interface org.graffiti.graph.Graph

Deletes Edge e from the current Graph.

deleteEvent(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteEventAssignment(Graph, String, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteEventID(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteEventName(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteEventUseValuesFromTriggerTime(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteFunctionDefinition(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteFunctionDefinitionFunction(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteFunctionDefinitionID(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteFunctionDefinitionName(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteInitialAssignment(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteInitialAssignmentFunction(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteInitialAssignmentSymbol(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteKineticLawFunction(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteLicenseFile(String) - Static method in class org.vanted.KeggAccess

Deletes any existing file, indicating the state of the KEGG license agreement.

deleteLocalParameter(Node, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteLocalParameterID(Node, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteLocalParameterName(Node, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteLocalParameterUnits(Node, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteLocalParameterValue(Node, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteMax() - Method in class placement.MaxPairingHeap

Remove the biggest item from the priority queue.

deleteMax() - Method in interface placement.MaxPriorityQueue

deleteMax() - Method in class placement.ScanListPriorityQueue

deleteMax() - Method in class placement.SlowPriorityQueue

deleteMetaID(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.KineticLawHelper

deleteMetaID(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter

deleteMetaID(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

deleteMetaID(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper

deleteMetaIDModifier(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

deleteMetaIDProduct(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

deleteMetaIDReactant(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

deleteMin() - Method in class placement.MinPairingHeap

Remove the smallest item from the priority queue.

deleteModifier(Edge) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteNode(Node) - Method in class org.graffiti.graph.AbstractGraph

Deletes the given node.

deleteNode(Node) - Method in interface org.graffiti.graph.Graph

Deletes the Node n.

DeleteNodesAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup

Labels all selected nodes with unique numbers.

DeleteNodesAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup.DeleteNodesAlgorithm

Constructs a new instance.

DeleteNodesPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup

Provides a spring embedder algorithm a la KK.

DeleteNodesPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup.DeleteNodesPlugin

deleteNonRDFAnnotation(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.KineticLawHelper

deleteNonRDFAnnotation(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter

deleteNonRDFAnnotation(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

deleteNonRDFAnnotation(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper

deleteNonRDFAnnotationModifier(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

deleteNonRDFAnnotationProduct(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

deleteNonRDFAnnotationReactant(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

deleteNotes(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.KineticLawHelper

deleteNotes(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter

deleteNotes(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

deleteNotes(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper

deleteNotesModifier(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

deleteNotesProduct(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

deleteNotesReactant(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

deleteParameter(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteParameterConstant(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteParameterID(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteParameterName(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteParameterUnits(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteParameterValue(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deletePriority(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deletePriorityFunction(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteProduct(Edge) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteRateRule(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteRateRuleFunction(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteRateRuleVariable(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteReactant(Edge) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteReactionCompartment(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteReactionFast(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteReactionID(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteReactionName(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteReactionReversible(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteReactionSpecies(Edge) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteReactionSpeciesID(Edge) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteReactionSpeciesName(Edge) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteRow(int) - Method in class info.clearthought.layout.TableLayout

Deletes a row in this layout.

deleteSBOTerm(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.KineticLawHelper

deleteSBOTerm(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter

deleteSBOTerm(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

deleteSBOTerm(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper

deleteSBOTermModifier(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

deleteSBOTermProduct(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

deleteSBOTermReactant(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

deleteSpecies(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteSpeciesBoundaryCondition(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteSpeciesCompartment(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteSpeciesConstant(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteSpeciesConversionFactor(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteSpeciesHasOnlySubstanceUnits(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteSpeciesID(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteSpeciesInitialAmount(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteSpeciesInitialConcentration(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteSpeciesName(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteSpeciesSubstanceUnits(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteStoichiometry(Edge) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteTriggeInitialValue(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteTrigger(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteTriggerFunction(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteTriggerPersistent(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteUnitDefinitionID(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deleteUnitDefinitionName(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

deltaE2000(Color, Color) - Static method in class org.color.ColorUtil

deltaE2000simu(int, int) - Static method in class org.color.ColorUtil

demethylation - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.SubtypeName

DemoDatasetFactory - Class in org.jfree.chart.demo

A utility class for generating sample datasets for the demos.

DemoDatasetFactory() - Constructor for class org.jfree.chart.demo.DemoDatasetFactory

DemoResources - Class in org.jfree.chart.demo.resources

A resource bundle that stores all the user interface items that might need localisation.

DemoResources() - Constructor for class org.jfree.chart.demo.resources.DemoResources

DemoResources_de - Class in org.jfree.chart.demo.resources

Localised resources for Germany.

DemoResources_de() - Constructor for class org.jfree.chart.demo.resources.DemoResources_de

DemoResources_es - Class in org.jfree.chart.demo.resources

A resource bundle that stores all the user interface items that might need localisation.

DemoResources_es() - Constructor for class org.jfree.chart.demo.resources.DemoResources_es

DemoResources_fr - Class in org.jfree.chart.demo.resources

Localised resources for France.

DemoResources_fr() - Constructor for class org.jfree.chart.demo.resources.DemoResources_fr

DemoResources_pl - Class in org.jfree.chart.demo.resources

A resource bundle that stores all the user interface items that might need localisation.

DemoResources_pl() - Constructor for class org.jfree.chart.demo.resources.DemoResources_pl

Dependency - Interface in org.graffiti.managers.pluginmgr

Interface for dependency of a plugin.

dephosphorylation - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.SubtypeName

desc - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttribute

Describable - Interface in org.vanted.plugins.layout.multilevelframework

Implementing classes have a name and description.

DESCRIPTION - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter.QueryType

DESCRIPTION - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReaction

DESCRIPTION - Static variable in class org.vanted.scaling.vanted.HighDPISupport

DescriptionPanel - Class in org.jfree.chart.demo

A panel containing a chart description.

DescriptionPanel(JTextArea) - Constructor for class org.jfree.chart.demo.DescriptionPanel

Creates a new panel.

DesEncrypter - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe

DesEncrypter(String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe.DesEncrypter

DesktopMenuManager - Class in org.graffiti.util

Manages menu entries for the internal frames contained in a desktop pane.

DesktopMenuManager(JDesktopPane, JMenu) - Constructor for class org.graffiti.util.DesktopMenuManager

Create a MenuManager object and associate it with a desktop and a menu.

detachOrAttachActiveFrame(boolean) - Static method in class org.graffiti.editor.GraffitiFrame

DiagrammData - Class in qmwi.kseg.som.diagram

Insert the type's description here.

DiagrammData() - Constructor for class qmwi.kseg.som.diagram.DiagrammData

DiagrammData constructor comment.

DiagrammData(int, int, double, String) - Constructor for class qmwi.kseg.som.diagram.DiagrammData

DiagrammData constructor comment.

DiagrammPaneData - Class in qmwi.kseg.som.diagram

Insert the type's description here.

DiagrammPaneData() - Constructor for class qmwi.kseg.som.diagram.DiagrammPaneData

LeftWindowTableData constructor comment.

DiagrammPaneData(ClassesAll, AttributsAll) - Constructor for class qmwi.kseg.som.diagram.DiagrammPaneData

Insert the method's description here.

dialogSizeUpdate() - Method in class org.FolderPanel

DialShape - Class in org.jfree.chart.plot

Used to indicate the background shape for a MeterPlot.

DIALTYPE_CHORD - Static variable in class org.jfree.chart.plot.MeterPlot

Constant for meter type 'chord'.

DIALTYPE_CIRCLE - Static variable in class org.jfree.chart.plot.MeterPlot

Constant for meter type 'circle'.

DIALTYPE_PIE - Static variable in class org.jfree.chart.plot.MeterPlot

Constant for meter type 'pie'.

diamondArrow - Static variable in class org.graffiti.plugins.editcomponents.defaults.EdgeArrowShapeEditComponent

DiamondArrowShape - Class in org.graffiti.plugins.views.defaults

DiamondArrowShape() - Constructor for class org.graffiti.plugins.views.defaults.DiamondArrowShape

DiamondArrowShape(float) - Constructor for class org.graffiti.plugins.views.defaults.DiamondArrowShape

DiamondShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes

DiamondShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.DiamondShape

die() - Method in class org.graffiti.plugin.algorithm.AbstractAlgorithm

DifferenceChartDemo - Class in org.jfree.chart.demo

A simple demonstration of the XYDifferenceRenderer.

DifferenceChartDemo(String) - Constructor for class org.jfree.chart.demo.DifferenceChartDemo

Creates a new demo.

DifferenceChartDemo2 - Class in org.jfree.chart.demo

A simple demonstration of the XYDifferenceRenderer.

DifferenceChartDemo2(String) - Constructor for class org.jfree.chart.demo.DifferenceChartDemo2

Creates a new demo.

DIM_PATH - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants

Path to dimension attribute

DIMENSION - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants

DimensionAttribute - Class in org.graffiti.graphics

Contains the graphic attribute dimension, that represents the minimal surrounding rectangle

DimensionAttribute(String) - Constructor for class org.graffiti.graphics.DimensionAttribute

Constructor for Dimension.

DimensionAttribute(String, double, double) - Constructor for class org.graffiti.graphics.DimensionAttribute

Constructor for Dimension.

DimensionAttribute(String, Dimension) - Constructor for class org.graffiti.graphics.DimensionAttribute

Constructor for Dimension.

DimensionAttribute(String, DoubleAttribute, DoubleAttribute) - Constructor for class org.graffiti.graphics.DimensionAttribute

Constructor for Dimension.

DIMH_PATH - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants

Path to height attribute

DIMW_PATH - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants

Path to width attribute

DIRECTED - Static variable in interface org.graffiti.graph.Edge

Indicates that an Edge is directed.

DIRECTED - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

DIRECTED_ATTRIBUTE_LITERAL - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLConstants

directed attribute

DIRECTIONS - Static variable in class org.jfree.chart.axis.CompassFormat

The directions.

DirkDemo - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent

DirkDemo() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.DirkDemo

DISABLE_INACTIVE_MENUITEMS - org.graffiti.editor.MainFrame.HideOrDeactivateMenu

All deactivated menuitems will still be shown (standard behaviour).

disableFeature(FeatureSet) - Static method in class org.ReleaseInfo

disableTitleView() - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskPanelEntry

disableUndo() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate.RotateAlgorithm

DISCONTINUOUS - Static variable in class org.jfree.chart.renderer.StandardXYItemRenderer

Constant for the type of rendering (discontinuous lines).

DISCONTINUOUS_LINES - Static variable in class org.jfree.chart.renderer.StandardXYItemRenderer

Constant for the type of rendering (discontinuous lines).

DISEASE - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter.QueryType

Displayable - Interface in org.graffiti.plugin

DOCUMENT ME!

displayAsMarked(List<GraphElementComponent>) - Method in class org.graffiti.plugin.tool.AbstractTool

Display a list of graph element components

displayAsMarked(EdgeComponentInterface) - Method in class org.graffiti.plugin.tool.AbstractTool

Show an edge component as marked.

displayAsMarked(GraphElementComponent) - Method in class org.graffiti.plugin.tool.AbstractTool

Show a graph element component as marked.

displayAsMarked(NodeComponentInterface) - Method in class org.graffiti.plugin.tool.AbstractTool

Show a node component as marked.

displayGraph(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

displays a graph in the mainframe

displayLifesaver() - Method in class org.vanted.scaling.DPIHelper

Displays a reset dialog that prompts the user to reset the scaling or not, when the previous setting has gone out of reasonable scaling bounds and proper viewing has become impossible.

dispose() - Method in class org.graffiti.plugins.views.defaults.RoundGradientContext

dispose() - Method in class org.graffiti.util.DesktopMenuManager

Dispose this manager.

dispose() - Method in class org.graffiti.util.MaximizeManager

Remove the buttons from the menu bar, remove all listeners and therefore make this object eligible for garbage collection.

dissociation - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.SubtypeName

distance(double, double) - Method in class org.Vector2d

distance(Vector2d) - Method in class org.Vector2d

DistanceAccumulator - Class in org.vanted.indexednodes.accumulators

DistanceAccumulator(int) - Constructor for class org.vanted.indexednodes.accumulators.DistanceAccumulator

DistanceInfo - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths

DistanceInfo(double, Node, Node) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.DistanceInfo

DistanceMatrix - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms

DistanceMatrix() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DistanceMatrix

distributeLabels(double, double) - Method in class org.jfree.chart.plot.PieLabelDistributor

Distributes the labels.

DnDList - Class in net.iharder.dnd

An extension of JList that supports drag and drop to rearrange its contents and to move objects in and out of the list.

DnDList() - Constructor for class net.iharder.dnd.DnDList

Constructs a default DnDList using a DefaultListModel.

DnDList(Object[]) - Constructor for class net.iharder.dnd.DnDList

Constructs a DnDList by filling in a DefaultListModel with the passed array of objects.

DnDList(Vector) - Constructor for class net.iharder.dnd.DnDList

Constructs a DnDList by filling in a DefaultListModel with the passed Vector of objects.

DnDList(DefaultListModel) - Constructor for class net.iharder.dnd.DnDList

Constructs a DnDList using the passed list model that must be extended from DefaultListModel.

do_action(int, lr_parser, Stack, int) - Method in class org.graffiti.plugins.ios.importers.gml.parser

Invoke a user supplied parse action.

doBeforeExit() - Method in interface org.graffiti.plugin.GenericPlugin

The routines to perform before the editor will exit.

doBeforeExit() - Method in class org.graffiti.plugin.GenericPluginAdapter

The routines to perform before the editor will exit.

doCircularEdgeCrossingsMinimization(Object, ArrayList<Node>, Runnable) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.services.AlgorithmServices

DOCKING - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants

DOCKING_PATH - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants

Path to docking attribute

DockingAttribute - Class in org.graffiti.graphics

Contains the graphic attribute docking for edges.

DockingAttribute(String) - Constructor for class org.graffiti.graphics.DockingAttribute

Constructor for Docking.

DockingAttribute(String, String, String) - Constructor for class org.graffiti.graphics.DockingAttribute

Constructor for Docking.

DockingAttributeEditor - Class in org.graffiti.plugins.views.defaults

DockingAttributeEditor(Displayable) - Constructor for class org.graffiti.plugins.views.defaults.DockingAttributeEditor

DockingAttributeEditor.DockingModes - Enum in org.graffiti.plugins.views.defaults

DockingAttributeEditor.EdgeDockingRenderer - Class in org.graffiti.plugins.views.defaults

doCopyGraph(Graph, Selection) - Static method in class org.graffiti.editor.actions.CopyAction

doCopyGraphMethodImproved(Graph, Selection) - Static method in class org.graffiti.editor.actions.CopyAction

doCopyGraphMethodImproved(Graph, Selection, boolean) - Static method in class org.graffiti.editor.actions.CopyAction

doCopyGraphMethodImproved(Graph, Selection, boolean, OutputSerializer) - Static method in class org.graffiti.editor.actions.CopyAction

doCopyPatternLayout - Variable in class org.graffiti.plugin.algorithm.ThreadSafeOptions

Init parameter.

DOCTYPE_NAME - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLConstants

doDavidSchnellTest(List<Node>, Graph, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics

Returns all nodes which contain samples which are not normaly distributed.

doEnableKEGGaskUser() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.Main

Deprecated.

doEnableKEGGaskUser() - Static method in class org.vanted.KeggAccess

Show the message dialog for enabling KEGG access by accepting the license.

doesMatch(Attributable, Collection<GraphElement>, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption

doesUndo() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.ExchangeNodePositionsAlgorithm

doesUndo() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.RemoveMappingDataAlgorithm

doesUndo() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.RemoveBendsAlgorithm

doesUndo() - Method in class org.graffiti.plugin.algorithm.AbstractAlgorithm

Must return true to allow Undo/Redo edits.

doFinishMoveToTop - Variable in class org.graffiti.plugin.algorithm.ThreadSafeOptions

Parameter which is evaluated by the springEmbedder layouter at the end of the run.

doFinishRemoveOverlapp - Variable in class org.graffiti.plugin.algorithm.ThreadSafeOptions

doFreeMemory() - Method in interface org.graffiti.editor.MemoryHog

doGrubbsTest(List<Node>, Graph, double, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.GrubbsTestAlgorithm

doInitialScaling(Container) - Static method in class org.vanted.scaling.ScalerLoader

Scale any loading banner to reflect the DPI factor.

doLayout() - Method in class org.graffiti.editor.GraffitiInternalFrame

domainAxis - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ChartOptions

DomainInfo - Interface in org.jfree.data

An interface (optional) that can be implemented by a dataset to assist in determining the minimum and maximum values.

DOMEcho - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control

This is a program to echo a DOM tree using DOM Level 2 interfaces.

doMultiplyByNodeDegree - Variable in class org.graffiti.plugin.algorithm.ThreadSafeOptions

DONT_BREAK_LINES - Static variable in class org.graffiti.plugins.ios.exporters.graphml.Base64

Don't break lines when encoding (violates strict Base64 specification)

DONT_BREAK_LINES - Static variable in class org.graffiti.plugins.ios.importers.graphml.parser.Base64

Don't break lines when encoding (violates strict Base64 specification)

DONT_CARE - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.TristateCheckBox

DONT_SHOW_RESULTDIALOG - de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping.DataMapping.ShowMappingResults

dontSort - de.ipk_gatersleben.ag_nw.graffiti.NodeSortCommand

doOperation(Collection<Node>, double, double, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_reduce_space.ExpandReduceLayouterAlgorithm

doQuit() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_dbe.MenuItemInfoDialog

Needed for Mac compatibility (used by reflection code)

doRandomInit - Variable in class org.graffiti.plugin.algorithm.ThreadSafeOptions

Init parameter.

doRemoveAllBends - Variable in class org.graffiti.plugin.algorithm.ThreadSafeOptions

doSaveAs() - Method in class org.jfree.chart.ChartPanel

Opens a file chooser and gives the user an opportunity to save the chart in PNG format.

doScaling(boolean, Container...) - Static method in class org.vanted.scaling.ScalerLoader

It does exactly what its name suggests - it ventures preferences and scales according to the value.

doScan(boolean) - Method in class org.vanted.updater.ScanForAddonUpdates

doSearch(SearchOption[]) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchDialog

doSearch(SearchOption[], boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchDialog

doSetTarget(Node) - Method in class org.graffiti.graph.AdjListEdge

Sets the target of the current Edge to target.

doSyncExternalScaling(Container) - Static method in class org.vanted.scaling.ScalerLoader

This waits for the application's main frame to have been initialized, in order to scale its user-set components.

doSyncInitialScaling(Container) - Static method in class org.vanted.scaling.ScalerLoader

This waits for the application's main frame to have been initialized, in order to scale its components on initial basis.

DotLayoutAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle

DotLayoutAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.DotLayoutAlgorithm

Creates a new CircleLayouterAlgorithm object.

DOTreader - Class in org.graffiti.plugins.ios.exporters.graphviz

DOTreader() - Constructor for class org.graffiti.plugins.ios.exporters.graphviz.DOTreader

DOTSerializer - Class in org.graffiti.plugins.ios.exporters.graphviz

A very very simple writer for a graph in the dot format for Graphviz.

DOTSerializer() - Constructor for class org.graffiti.plugins.ios.exporters.graphviz.DOTSerializer

DOTSerializerPlugin - Class in org.graffiti.plugins.ios.exporters.graphviz

The plugin for reading and writing files from the Graphviz tools.

DOTSerializerPlugin() - Constructor for class org.graffiti.plugins.ios.exporters.graphviz.DOTSerializerPlugin

Creates a new DOTSerializerPlugin object.

DoubleAndSourceList - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics

DoubleAndSourceList(Double, int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.DoubleAndSourceList

DoubleAttribute - Class in org.graffiti.attributes

Contains a double

DoubleAttribute(String) - Constructor for class org.graffiti.attributes.DoubleAttribute

Constructs a new instance of a DoubleAttribute.

DoubleAttribute(String, double) - Constructor for class org.graffiti.attributes.DoubleAttribute

Constructs a new instance of a DoubleAttribute with the given value.

DoubleAttribute(String, Double) - Constructor for class org.graffiti.attributes.DoubleAttribute

Constructs a new instance of a DoubleAttribute with the given value.

DoubleEditComponent - Class in org.graffiti.plugins.editcomponents.defaults

Represents a gui component, which handles double values.

DoubleEditComponent(Displayable) - Constructor for class org.graffiti.plugins.editcomponents.defaults.DoubleEditComponent

Creates a new DoubleEditComponent object.

DoubleEllipseShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes

DoubleEllipseShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.DoubleEllipseShape

DoubleEllipseShape(boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.DoubleEllipseShape

DoubleParameter - Class in org.graffiti.plugin.parameter

Parameter that can contain Double/double values.

DoubleParameter(Double, Double, Double, Double, String, String) - Constructor for class org.graffiti.plugin.parameter.DoubleParameter

Constructs a new Double parameter.

DoubleParameter(Double, Double, Double, String, String) - Constructor for class org.graffiti.plugin.parameter.DoubleParameter

Constructs a new Double parameter.

DoubleParameter(Double, Double, String, String) - Constructor for class org.graffiti.plugin.parameter.DoubleParameter

Constructs a new Double parameter.

DoubleParameter(Double, String, String) - Constructor for class org.graffiti.plugin.parameter.DoubleParameter

Constructs a new Double parameter.

DoubleParameter(String, String) - Constructor for class org.graffiti.plugin.parameter.DoubleParameter

Constructs a new double parameter.

DoubleTimePoint - Class in org.vanted.animation.data

DoubleTimePoint(double, Double) - Constructor for class org.vanted.animation.data.DoubleTimePoint

doubleValue - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.SpecialTableValue

doubleValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ReplicateDouble

doubleValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyDouble

doValidateSBMLOnLoad(boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_XML_Reader

DOWN_45 - Static variable in class org.jfree.chart.axis.CategoryLabelPositions

DOWN_45 category label positions.

DOWN_90 - Static variable in class org.jfree.chart.axis.CategoryLabelPositions

DOWN_90 category label positions.

DOWNLOAD - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.FeedDownloadType

downloadFile(URL, String, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.FileHelper

Downloads a file from the web to a local folder.

DPI - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SizeSetting

DPIHelper - Class in org.vanted.scaling

An utility helper that takes care of processing the DPI from a provided value (Slider value) and is responsible for managing the scaling preferences among some other useful functions in hand.

DPIHelper() - Constructor for class org.vanted.scaling.DPIHelper

DragAndDropHandler - Interface in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart

Use DataDragAndDropHandler or ExperimentDataDragAndDropHandler in case this handler processes input files for the creation of Substance datasets.

dragDropEnd(DragSourceDropEvent) - Method in class net.iharder.dnd.DnDList

dragEnter(DragSourceDragEvent) - Method in class net.iharder.dnd.DnDList

dragEnter(DropTargetDragEvent) - Method in class net.iharder.dnd.DnDList

dragEnter(DropTargetDragEvent) - Method in class org.graffiti.editor.MainFrame

dragExit(DragSourceEvent) - Method in class net.iharder.dnd.DnDList

dragExit(DropTargetEvent) - Method in class net.iharder.dnd.DnDList

dragExit(DropTargetEvent) - Method in class org.graffiti.editor.MainFrame

dragGestureRecognized(DragGestureEvent) - Method in class net.iharder.dnd.DnDList

dragOver(DragSourceDragEvent) - Method in class net.iharder.dnd.DnDList

dragOver(DropTargetDragEvent) - Method in class net.iharder.dnd.DnDList

dragOver(DropTargetDragEvent) - Method in class org.graffiti.editor.MainFrame

draw - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.DrawingGroup

draw(Graphics2D, double, double) - Method in class org.jfree.chart.DrawableLegendItem

Draw the item.

draw(Graphics2D, double, Rectangle2D, Rectangle2D, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.ColorBar

Draws the plot on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, double, Rectangle2D, Rectangle2D, RectangleEdge, PlotRenderingInfo) - Method in class org.jfree.chart.axis.Axis

Draws the axis on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, double, Rectangle2D, Rectangle2D, RectangleEdge, PlotRenderingInfo) - Method in class org.jfree.chart.axis.CategoryAxis

Draws the axis on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, double, Rectangle2D, Rectangle2D, RectangleEdge, PlotRenderingInfo) - Method in class org.jfree.chart.axis.CategoryAxis3D

Draws the axis on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, double, Rectangle2D, Rectangle2D, RectangleEdge, PlotRenderingInfo) - Method in class org.jfree.chart.axis.CyclicNumberAxis

Draws the axis.

draw(Graphics2D, double, Rectangle2D, Rectangle2D, RectangleEdge, PlotRenderingInfo) - Method in class org.jfree.chart.axis.DateAxis

Draws the axis on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, double, Rectangle2D, Rectangle2D, RectangleEdge, PlotRenderingInfo) - Method in class org.jfree.chart.axis.NumberAxis

Draws the axis on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, double, Rectangle2D, Rectangle2D, RectangleEdge, PlotRenderingInfo) - Method in class org.jfree.chart.axis.NumberAxis3D

Draws the axis on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, double, Rectangle2D, Rectangle2D, RectangleEdge, PlotRenderingInfo) - Method in class org.jfree.chart.axis.SubCategoryAxis

Draws the axis on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, double, Rectangle2D, Rectangle2D, RectangleEdge, PlotRenderingInfo) - Method in class org.jfree.chart.axis.SymbolicAxis

Draws the axis on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, Rectangle2D) - Method in class org.jfree.chart.demo.CircleDrawer

Draws the circle.

draw(Graphics2D, Rectangle2D) - Method in class org.jfree.chart.JFreeChart

Draws the chart on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, Rectangle2D) - Method in class org.jfree.chart.MeterLegend

Draws the legend.

draw(Graphics2D, Rectangle2D) - Method in class org.jfree.chart.needle.MeterNeedle

Draws the needle.

draw(Graphics2D, Rectangle2D) - Method in class org.jfree.chart.title.ImageTitle

Draws the title on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, Rectangle2D) - Method in class org.jfree.chart.title.LegendTitle

Draws the title on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, Rectangle2D) - Method in class org.jfree.chart.title.TextTitle

Draws the title on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, Rectangle2D) - Method in class org.jfree.chart.title.Title

Draws the title on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, Rectangle2D, double) - Method in class org.jfree.chart.needle.MeterNeedle

Draws the needle.

draw(Graphics2D, Rectangle2D, Point2D, double) - Method in class org.jfree.chart.needle.MeterNeedle

Draws the needle.

draw(Graphics2D, Rectangle2D, Point2D, ChartRenderingInfo) - Method in class org.jfree.chart.JFreeChart

Draws the chart on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, Rectangle2D, Point2D, PlotState, PlotRenderingInfo) - Method in class org.jfree.chart.plot.CombinedDomainXYPlot

Draws the plot within the specified area on a graphics device.

draw(Graphics2D, Rectangle2D, Point2D, PlotState, PlotRenderingInfo) - Method in class org.jfree.chart.plot.CombinedRangeXYPlot

Draws the plot within the specified area on a graphics device.

draw(Graphics2D, Rectangle2D, Point2D, PlotState, PlotRenderingInfo) - Method in class org.jfree.chart.plot.Plot

Implement later to make use of anchor.

draw(Graphics2D, Rectangle2D, Point2D, PlotState, PlotRenderingInfo) - Method in class org.jfree.chart.plot.XYPlot

Draws the plot within the specified area on a graphics device.

draw(Graphics2D, Rectangle2D, Rectangle2D, double, double) - Method in class org.jfree.chart.axis.MarkerAxisBand

Draws the band.

draw(Graphics2D, Rectangle2D, ValueAxis, ValueAxis) - Method in class org.jfree.chart.ClipPath

Draws the clip path.

draw(Graphics2D, Rectangle2D, ChartRenderingInfo) - Method in class org.jfree.chart.JFreeChart

Draws the chart on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, Rectangle2D, ChartRenderingInfo) - Method in class org.jfree.chart.Legend

Draws the legend on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, Rectangle2D, ChartRenderingInfo) - Method in class org.jfree.chart.StandardLegend

Draws the legend on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, Rectangle2D, PlotState, PlotRenderingInfo) - Method in class org.jfree.chart.plot.CategoryPlot

Draws the plot on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, Rectangle2D, PlotState, PlotRenderingInfo) - Method in class org.jfree.chart.plot.CombinedDomainCategoryPlot

Draws the plot on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, Rectangle2D, PlotState, PlotRenderingInfo) - Method in class org.jfree.chart.plot.CombinedDomainXYPlot

Draws the plot on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, Rectangle2D, PlotState, PlotRenderingInfo) - Method in class org.jfree.chart.plot.CombinedRangeCategoryPlot

Draws the plot on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, Rectangle2D, PlotState, PlotRenderingInfo) - Method in class org.jfree.chart.plot.CombinedRangeXYPlot

Draws the plot on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, Rectangle2D, PlotState, PlotRenderingInfo) - Method in class org.jfree.chart.plot.CompassPlot

Draws the plot on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, Rectangle2D, PlotState, PlotRenderingInfo) - Method in class org.jfree.chart.plot.ContourPlot

Draws the plot on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, Rectangle2D, PlotState, PlotRenderingInfo) - Method in class org.jfree.chart.plot.FastScatterPlot

Draws the fast scatter plot on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, Rectangle2D, PlotState, PlotRenderingInfo) - Method in class org.jfree.chart.plot.MeterPlot

Draws the plot on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, Rectangle2D, PlotState, PlotRenderingInfo) - Method in class org.jfree.chart.plot.MultiplePiePlot

Draws the plot on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, Rectangle2D, PlotState, PlotRenderingInfo) - Method in class org.jfree.chart.plot.PiePlot

Draws the plot on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, Rectangle2D, PlotState, PlotRenderingInfo) - Method in class org.jfree.chart.plot.PiePlot3D

Draws the plot on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, Rectangle2D, PlotState, PlotRenderingInfo) - Method in class org.jfree.chart.plot.Plot

Draws the plot on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, Rectangle2D, PlotState, PlotRenderingInfo) - Method in class org.jfree.chart.plot.PolarPlot

Draws the plot on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, Rectangle2D, PlotState, PlotRenderingInfo) - Method in class org.jfree.chart.plot.ThermometerPlot

Draws the plot on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, Rectangle2D, PlotState, PlotRenderingInfo) - Method in class org.jfree.chart.plot.WaferMapPlot

Draws the wafermap view.

draw(Graphics2D, Rectangle2D, PlotState, PlotRenderingInfo) - Method in class org.jfree.chart.plot.XYPlot

Draws the plot on a Java 2D graphics device (such as the screen or a printer).

draw(Graphics2D, CategoryPlot, Rectangle2D, CategoryAxis, ValueAxis) - Method in interface org.jfree.chart.annotations.CategoryAnnotation

Draws the annotation.

draw(Graphics2D, CategoryPlot, Rectangle2D, CategoryAxis, ValueAxis) - Method in class org.jfree.chart.annotations.CategoryTextAnnotation

Draws the annotation.

draw(Graphics2D, XYPlot, Rectangle2D, ValueAxis, ValueAxis) - Method in interface org.jfree.chart.annotations.XYAnnotation

Draws the annotation.

draw(Graphics2D, XYPlot, Rectangle2D, ValueAxis, ValueAxis) - Method in class org.jfree.chart.annotations.XYDrawableAnnotation

Draws the annotation.

draw(Graphics2D, XYPlot, Rectangle2D, ValueAxis, ValueAxis) - Method in class org.jfree.chart.annotations.XYImageAnnotation

Draws the annotation.

draw(Graphics2D, XYPlot, Rectangle2D, ValueAxis, ValueAxis) - Method in class org.jfree.chart.annotations.XYLineAnnotation

Draws the annotation.

draw(Graphics2D, XYPlot, Rectangle2D, ValueAxis, ValueAxis) - Method in class org.jfree.chart.annotations.XYPointerAnnotation

Draws the annotation.

draw(Graphics2D, XYPlot, Rectangle2D, ValueAxis, ValueAxis) - Method in class org.jfree.chart.annotations.XYShapeAnnotation

Draws the annotation.

draw(Graphics2D, XYPlot, Rectangle2D, ValueAxis, ValueAxis) - Method in class org.jfree.chart.annotations.XYTextAnnotation

Draws the annotation.

DrawableLegendItem - Class in org.jfree.chart

Represents a single item within a legend.

DrawableLegendItem(LegendItem) - Constructor for class org.jfree.chart.DrawableLegendItem

Create a legend item.

drawAngularGridLines(Graphics2D, PolarPlot, List, Rectangle2D) - Method in class org.jfree.chart.renderer.DefaultPolarItemRenderer

Draw the angular gridlines - the spokes.

drawAngularGridLines(Graphics2D, PolarPlot, List, Rectangle2D) - Method in interface org.jfree.chart.renderer.PolarItemRenderer

Draw the angular gridlines - the spokes.

drawAnnotations(Graphics2D, Rectangle2D, PlotRenderingInfo) - Method in class org.jfree.chart.plot.XYPlot

Draws the annotations for the plot.

drawBackground(Graphics2D, Rectangle2D) - Method in class org.jfree.chart.plot.Plot

Draws the plot background (the background color and/or image).

drawBackground(Graphics2D, Rectangle2D) - Method in class org.jfree.chart.plot.XYPlot

Draws the background for the plot.

drawBackground(Graphics2D, CategoryPlot, Rectangle2D) - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer

Draws a background for the data area.

drawBackground(Graphics2D, CategoryPlot, Rectangle2D) - Method in class org.jfree.chart.renderer.BarRenderer3D

Draws the background for the plot.

drawBackground(Graphics2D, CategoryPlot, Rectangle2D) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Draws a background for the data area.

drawBarChartVarianceLine(Graphics, int, int, int, double, Double, int, int, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.MyGraphicsTools

drawColorBar(Graphics2D, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.ColorBar

Draws the plot on a Java 2D graphics device (such as the screen or a printer).

drawConstraints() - Method in class placement.RectangleDrawerPanel

drawCornerTextItems(Graphics2D, Rectangle2D) - Method in class org.jfree.chart.plot.PolarPlot

Draws the corner text items.

drawDomainGridline(Graphics2D, CategoryPlot, Rectangle2D, double) - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer

Draws a grid line against the domain axis.

drawDomainGridline(Graphics2D, CategoryPlot, Rectangle2D, double) - Method in class org.jfree.chart.renderer.BarRenderer3D

Draws a grid line against the domain axis.

drawDomainGridline(Graphics2D, CategoryPlot, Rectangle2D, double) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Draws a grid line against the domain axis.

drawDomainGridLine(Graphics2D, XYPlot, ValueAxis, Rectangle2D, double) - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer

Draws a grid line against the range axis.

drawDomainGridLine(Graphics2D, XYPlot, ValueAxis, Rectangle2D, double) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Draws a grid line against the domain axis.

drawDomainMarker(Graphics2D, ContourPlot, ValueAxis, Marker, Rectangle2D) - Method in class org.jfree.chart.plot.ContourPlot

Draws a vertical line on the chart to represent a 'range marker'.

drawDomainMarker(Graphics2D, XYPlot, ValueAxis, Marker, Rectangle2D) - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer

Draws a vertical line on the chart to represent a 'range marker'.

drawDomainMarker(Graphics2D, XYPlot, ValueAxis, Marker, Rectangle2D) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Draws a vertical line on the chart to represent a 'range marker'.

drawDomainTickBands(Graphics2D, Rectangle2D, List<ValueTick>) - Method in class org.jfree.chart.plot.XYPlot

Draws the domain tick bands, if any.

drawFrame(Graphics, Color, Color, int, int, int, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.MyGraphicsTools

drawGrid(Container, Graphics) - Method in class info.clearthought.layout.TableLayout

Draws a grid on the given container.

drawHorizontalItem(Graphics2D, Rectangle2D, PlotRenderingInfo, XYPlot, ValueAxis, ValueAxis, XYDataset, int, int, CrosshairState, int) - Method in class org.jfree.chart.renderer.XYBoxAndWhiskerRenderer

Draws the visual representation of a single data item.

drawHorizontalItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.jfree.chart.renderer.BoxAndWhiskerRenderer

Draws the visual representation of a single data item when the plot has a horizontal orientation.

DRAWING_FINISHED - Static variable in class org.jfree.chart.event.ChartProgressEvent

Indicates drawing has finished.

DRAWING_STARTED - Static variable in class org.jfree.chart.event.ChartProgressEvent

Indicates drawing has started.

DrawingGroup - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references

DrawingSupplier - Interface in org.jfree.chart.plot

A supplier of Paint and Stroke objects.

drawItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyLineAndShapeRenderer

drawItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.jfree.chart.demo.ExtendedStackedBarRenderer

Draws a stacked bar for a specific item.

drawItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.jfree.chart.renderer.AreaRenderer

Draw a single data item.

drawItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.jfree.chart.renderer.BarRenderer

Draws the bar for a single (series, category) data item.

drawItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.jfree.chart.renderer.BarRenderer3D

Draws a 3D bar to represent one data item.

drawItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.jfree.chart.renderer.BoxAndWhiskerRenderer

Draw a single data item.

drawItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Draws a single data item.

drawItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.jfree.chart.renderer.CategoryStepRenderer

Draw a single data item.

drawItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.jfree.chart.renderer.GanttRenderer

Draws the bar for a single (series, category) data item.

drawItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.jfree.chart.renderer.GroupedStackedBarRenderer

Draws a stacked bar for a specific item.

drawItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.jfree.chart.renderer.IntervalBarRenderer

Draws the bar for a single (series, category) data item.

drawItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.jfree.chart.renderer.LayeredBarRenderer

Draws the bar for one item in the dataset.

drawItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.jfree.chart.renderer.LevelRenderer

Draws the bar for a single (series, category) data item.

drawItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.jfree.chart.renderer.LineAndShapeRenderer

Draw a single data item.

drawItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.jfree.chart.renderer.MinMaxCategoryRenderer

Draw a single data item.

drawItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.jfree.chart.renderer.StackedAreaRenderer

Draw a single data item.

drawItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.jfree.chart.renderer.StackedBarRenderer

Draws a stacked bar for a specific item.

drawItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.jfree.chart.renderer.StackedBarRenderer3D

Draws a stacked bar (with 3D-effect) for a specific item.

drawItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.jfree.chart.renderer.StatisticalBarRenderer

Draws the bar with its standard deviation line range for a single (series, category) data item.

drawItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.jfree.chart.renderer.WaterfallBarRenderer

Draws the bar for a single (series, category) data item.

drawItem(Graphics2D, XYItemRendererState, Rectangle2D, PlotRenderingInfo, XYPlot, ValueAxis, ValueAxis, XYDataset, int, int, CrosshairState, int) - Method in class org.jfree.chart.renderer.AreaXYRenderer

Deprecated.

Draws the visual representation of a single data item.

drawItem(Graphics2D, XYItemRendererState, Rectangle2D, PlotRenderingInfo, XYPlot, ValueAxis, ValueAxis, XYDataset, int, int, CrosshairState, int) - Method in class org.jfree.chart.renderer.CandlestickRenderer

Draws the visual representation of a single data item.

drawItem(Graphics2D, XYItemRendererState, Rectangle2D, PlotRenderingInfo, XYPlot, ValueAxis, ValueAxis, XYDataset, int, int, CrosshairState, int) - Method in class org.jfree.chart.renderer.ClusteredXYBarRenderer

Draws the visual representation of a single data item.

drawItem(Graphics2D, XYItemRendererState, Rectangle2D, PlotRenderingInfo, XYPlot, ValueAxis, ValueAxis, XYDataset, int, int, CrosshairState, int) - Method in class org.jfree.chart.renderer.CyclicXYItemRenderer

Draws the visual representation of a single data item.

drawItem(Graphics2D, XYItemRendererState, Rectangle2D, PlotRenderingInfo, XYPlot, ValueAxis, ValueAxis, XYDataset, int, int, CrosshairState, int) - Method in class org.jfree.chart.renderer.HighLowRenderer

Draws the visual representation of a single data item.

drawItem(Graphics2D, XYItemRendererState, Rectangle2D, PlotRenderingInfo, XYPlot, ValueAxis, ValueAxis, XYDataset, int, int, CrosshairState, int) - Method in class org.jfree.chart.renderer.SignalRenderer

Draws the visual representation of a single data item.

drawItem(Graphics2D, XYItemRendererState, Rectangle2D, PlotRenderingInfo, XYPlot, ValueAxis, ValueAxis, XYDataset, int, int, CrosshairState, int) - Method in class org.jfree.chart.renderer.StackedXYAreaRenderer

Draws the visual representation of a single data item.

drawItem(Graphics2D, XYItemRendererState, Rectangle2D, PlotRenderingInfo, XYPlot, ValueAxis, ValueAxis, XYDataset, int, int, CrosshairState, int) - Method in class org.jfree.chart.renderer.StackedXYAreaRenderer2

Draws the visual representation of a single data item.

drawItem(Graphics2D, XYItemRendererState, Rectangle2D, PlotRenderingInfo, XYPlot, ValueAxis, ValueAxis, XYDataset, int, int, CrosshairState, int) - Method in class org.jfree.chart.renderer.StackedXYBarRenderer

Draws the visual representation of a single data item.

drawItem(Graphics2D, XYItemRendererState, Rectangle2D, PlotRenderingInfo, XYPlot, ValueAxis, ValueAxis, XYDataset, int, int, CrosshairState, int) - Method in class org.jfree.chart.renderer.StandardXYItemRenderer

Draws the visual representation of a single data item.

drawItem(Graphics2D, XYItemRendererState, Rectangle2D, PlotRenderingInfo, XYPlot, ValueAxis, ValueAxis, XYDataset, int, int, CrosshairState, int) - Method in class org.jfree.chart.renderer.WindItemRenderer

Draws the visual representation of a single data item.

drawItem(Graphics2D, XYItemRendererState, Rectangle2D, PlotRenderingInfo, XYPlot, ValueAxis, ValueAxis, XYDataset, int, int, CrosshairState, int) - Method in class org.jfree.chart.renderer.XYAreaRenderer

Draws the visual representation of a single data item.

drawItem(Graphics2D, XYItemRendererState, Rectangle2D, PlotRenderingInfo, XYPlot, ValueAxis, ValueAxis, XYDataset, int, int, CrosshairState, int) - Method in class org.jfree.chart.renderer.XYAreaRenderer2

Draws the visual representation of a single data item.

drawItem(Graphics2D, XYItemRendererState, Rectangle2D, PlotRenderingInfo, XYPlot, ValueAxis, ValueAxis, XYDataset, int, int, CrosshairState, int) - Method in class org.jfree.chart.renderer.XYBarRenderer

Draws the visual representation of a single data item.

drawItem(Graphics2D, XYItemRendererState, Rectangle2D, PlotRenderingInfo, XYPlot, ValueAxis, ValueAxis, XYDataset, int, int, CrosshairState, int) - Method in class org.jfree.chart.renderer.XYBoxAndWhiskerRenderer

Draws the visual representation of a single data item.

drawItem(Graphics2D, XYItemRendererState, Rectangle2D, PlotRenderingInfo, XYPlot, ValueAxis, ValueAxis, XYDataset, int, int, CrosshairState, int) - Method in class org.jfree.chart.renderer.XYBubbleRenderer

Draws the visual representation of a single data item.

drawItem(Graphics2D, XYItemRendererState, Rectangle2D, PlotRenderingInfo, XYPlot, ValueAxis, ValueAxis, XYDataset, int, int, CrosshairState, int) - Method in class org.jfree.chart.renderer.XYDifferenceRenderer

Draws the visual representation of a single data item.

drawItem(Graphics2D, XYItemRendererState, Rectangle2D, PlotRenderingInfo, XYPlot, ValueAxis, ValueAxis, XYDataset, int, int, CrosshairState, int) - Method in class org.jfree.chart.renderer.XYDotRenderer

Draws the visual representation of a single data item.

drawItem(Graphics2D, XYItemRendererState, Rectangle2D, PlotRenderingInfo, XYPlot, ValueAxis, ValueAxis, XYDataset, int, int, CrosshairState, int) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Called for each item to be plotted.

drawItem(Graphics2D, XYItemRendererState, Rectangle2D, PlotRenderingInfo, XYPlot, ValueAxis, ValueAxis, XYDataset, int, int, CrosshairState, int) - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer

Draws the visual representation of a single data item.

drawItem(Graphics2D, XYItemRendererState, Rectangle2D, PlotRenderingInfo, XYPlot, ValueAxis, ValueAxis, XYDataset, int, int, CrosshairState, int) - Method in class org.jfree.chart.renderer.XYStepAreaRenderer

Draws the visual representation of a single data item.

drawItem(Graphics2D, XYItemRendererState, Rectangle2D, PlotRenderingInfo, XYPlot, ValueAxis, ValueAxis, XYDataset, int, int, CrosshairState, int) - Method in class org.jfree.chart.renderer.XYStepRenderer

Draws the visual representation of a single data item.

drawItem(Graphics2D, XYItemRendererState, Rectangle2D, PlotRenderingInfo, XYPlot, ValueAxis, ValueAxis, XYDataset, int, int, CrosshairState, int) - Method in class org.jfree.chart.renderer.YIntervalRenderer

Draws the visual representation of a single data item.

DrawMode - Enum in org.graffiti.plugins.views.defaults

drawModeBarChart - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.DBEattribute

drawModeImage - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.DBEattribute

drawModeNorm - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.DBEattribute

drawModeVarName - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.DBEattribute

drawOnlyTopOfErrorBar() - Method in class org.jfree.data.statistics.DefaultStatisticalCategoryDataset

drawOnlyTopOfErrorBar() - Method in interface org.jfree.data.statistics.StatisticalCategoryDataset

drawOutline(Graphics2D, Rectangle2D) - Method in class org.jfree.chart.plot.Plot

Draws the plot outline.

drawOutline(Graphics2D, CategoryPlot, Rectangle2D) - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer

Draws an outline for the data area.

drawOutline(Graphics2D, CategoryPlot, Rectangle2D) - Method in class org.jfree.chart.renderer.BarRenderer3D

Draws the outline for the plot.

drawOutline(Graphics2D, CategoryPlot, Rectangle2D) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Draws an outline for the data area.

drawRadialGridLines(Graphics2D, PolarPlot, ValueAxis, List, Rectangle2D) - Method in class org.jfree.chart.renderer.DefaultPolarItemRenderer

Draw the radial gridlines - the rings.

drawRadialGridLines(Graphics2D, PolarPlot, ValueAxis, List, Rectangle2D) - Method in interface org.jfree.chart.renderer.PolarItemRenderer

Draw the radial gridlines - the rings.

drawRangeGridline(Graphics2D, CategoryPlot, ValueAxis, Rectangle2D, double) - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer

Draws a grid line against the range axis.

drawRangeGridline(Graphics2D, CategoryPlot, ValueAxis, Rectangle2D, double) - Method in class org.jfree.chart.renderer.BarRenderer3D

Draws a grid line against the range axis.

drawRangeGridline(Graphics2D, CategoryPlot, ValueAxis, Rectangle2D, double) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Draws a grid line against the range axis.

drawRangeGridLine(Graphics2D, XYPlot, ValueAxis, Rectangle2D, double) - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer

Draws a grid line against the range axis.

drawRangeGridLine(Graphics2D, XYPlot, ValueAxis, Rectangle2D, double) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Draws a grid line against the range axis.

drawRangeMarker(Graphics2D, CategoryPlot, ValueAxis, Marker, Rectangle2D) - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer

Draws a marker for the range axis.

drawRangeMarker(Graphics2D, CategoryPlot, ValueAxis, Marker, Rectangle2D) - Method in class org.jfree.chart.renderer.BarRenderer3D

Draws a range marker.

drawRangeMarker(Graphics2D, CategoryPlot, ValueAxis, Marker, Rectangle2D) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Draws a line (or some other marker) to indicate a particular value on the range axis.

drawRangeMarker(Graphics2D, ContourPlot, ValueAxis, Marker, Rectangle2D) - Method in class org.jfree.chart.plot.ContourPlot

Draws a horizontal line across the chart to represent a 'range marker'.

drawRangeMarker(Graphics2D, XYPlot, ValueAxis, Marker, Rectangle2D) - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer

Draws a horizontal line across the chart to represent a 'range marker'.

drawRangeMarker(Graphics2D, XYPlot, ValueAxis, Marker, Rectangle2D) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Draws a horizontal line across the chart to represent a 'range marker'.

drawRangeTickBands(Graphics2D, Rectangle2D, List<ValueTick>) - Method in class org.jfree.chart.plot.XYPlot

Draws the range tick bands, if any.

drawSeries(Graphics2D, Rectangle2D, PlotRenderingInfo, PolarPlot, XYDataset, int) - Method in class org.jfree.chart.renderer.DefaultPolarItemRenderer

Plots the data for a given series.

drawSeries(Graphics2D, Rectangle2D, PlotRenderingInfo, PolarPlot, XYDataset, int) - Method in interface org.jfree.chart.renderer.PolarItemRenderer

Plots the data for a given series.

drawShape(Graphics) - Method in class org.graffiti.plugins.views.defaults.EdgeComponent

Draws the shape associated with this component onto the graphics context of this component.

drawSymbolicGridLines(Graphics2D, Rectangle2D, Rectangle2D, RectangleEdge, List) - Method in class org.jfree.chart.axis.SymbolicAxis

Draws the symbolic grid lines.

drawSymbolicGridLinesHorizontal(Graphics2D, Rectangle2D, Rectangle2D, boolean, List) - Method in class org.jfree.chart.axis.SymbolicAxis

Draws the symbolic grid lines.

drawSymbolicGridLinesVertical(Graphics2D, Rectangle2D, Rectangle2D, boolean, List) - Method in class org.jfree.chart.axis.SymbolicAxis

Draws the symbolic grid lines.

drawTitle(Title, Graphics2D, Rectangle2D) - Method in class org.jfree.chart.JFreeChart

Draws a title.

drawVerticalItem(Graphics2D, Rectangle2D, PlotRenderingInfo, XYPlot, ValueAxis, ValueAxis, XYDataset, int, int, CrosshairState, int) - Method in class org.jfree.chart.renderer.XYBoxAndWhiskerRenderer

Draws the visual representation of a single data item.

drawVerticalItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.jfree.chart.renderer.BoxAndWhiskerRenderer

Draws the visual representation of a single data item when the plot has a vertical orientation.

drawVolume() - Method in class org.jfree.chart.renderer.CandlestickRenderer

Returns a flag indicating whether or not volume bars are drawn on the chart.

drop(DropTargetDropEvent) - Method in class net.iharder.dnd.DnDList

drop(DropTargetDropEvent) - Method in class org.graffiti.editor.MainFrame

dropActionChanged(DragSourceDragEvent) - Method in class net.iharder.dnd.DnDList

dropActionChanged(DropTargetDragEvent) - Method in class net.iharder.dnd.DnDList

dropActionChanged(DropTargetDragEvent) - Method in class org.graffiti.editor.MainFrame

DualAxisDemo - Class in org.jfree.chart.demo

A simple demonstration application showing how to create a dual axis chart based on data from two CategoryDataset instances.

DualAxisDemo(String) - Constructor for class org.jfree.chart.demo.DualAxisDemo

Creates a new demo instance.

DualAxisDemo2 - Class in org.jfree.chart.demo

An example of a time series chart.

DualAxisDemo2(String) - Constructor for class org.jfree.chart.demo.DualAxisDemo2

A demonstration application showing how to create a time series chart with dual axes.

DualAxisDemo3 - Class in org.jfree.chart.demo

A simple demonstration application showing how to create a dual axis chart based on data from two CategoryDataset instances.

DualAxisDemo3(String) - Constructor for class org.jfree.chart.demo.DualAxisDemo3

Creates a new demo instance.

DualAxisDemo4 - Class in org.jfree.chart.demo

A simple demonstration application showing how to create a dual axis chart based on data from two CategoryDataset instances.

DualAxisDemo4(String) - Constructor for class org.jfree.chart.demo.DualAxisDemo4

Creates a new demo instance.

DualAxisDemo5 - Class in org.jfree.chart.demo

This demo shows how to create a dual axis bar chart.

DualAxisDemo5(String) - Constructor for class org.jfree.chart.demo.DualAxisDemo5

Creates a new demo instance.

DuplicateEdge - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands

DuplicateEdge() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.DuplicateEdge

DvalIndexSliderHorForce - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.myOp

DvalIndexSliderStiffness - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.myOp

DvalIndexSliderVertForce - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.myOp

DvalIndexSliderZeroLength - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.myOp

dValues - Variable in class org.graffiti.plugin.algorithm.ThreadSafeOptions

Array for storing Double parameters

DynamicDataDemo - Class in org.jfree.chart.demo

A demonstration application showing a time series chart where you can dynamically add (random) data by clicking on a button.

DynamicDataDemo(String) - Constructor for class org.jfree.chart.demo.DynamicDataDemo

Constructs a new demonstration application.

DynamicDataDemo2 - Class in org.jfree.chart.demo

A demonstration application showing a time series chart where you can dynamically add (random) data by clicking on a button.

DynamicDataDemo2(String) - Constructor for class org.jfree.chart.demo.DynamicDataDemo2

Constructs a new demonstration application.

DynamicDataDemo3 - Class in org.jfree.chart.demo

A demonstration application showing a time series chart where you can dynamically add (random) data by clicking on a button.

DynamicDataDemo3(String) - Constructor for class org.jfree.chart.demo.DynamicDataDemo3

Constructs a new demonstration application.

DynamicDriveToolTipTagFragmentGenerator - Class in org.jfree.chart.imagemap

Generates tooltips using the Dynamic Drive DHTML Tip Message library (http://www.dynamicdrive.com).

DynamicDriveToolTipTagFragmentGenerator() - Constructor for class org.jfree.chart.imagemap.DynamicDriveToolTipTagFragmentGenerator

Blank constructor.

DynamicDriveToolTipTagFragmentGenerator(String, int) - Constructor for class org.jfree.chart.imagemap.DynamicDriveToolTipTagFragmentGenerator

Creates a new generator with specific title and style settings.

DynamicTimeSeriesCollection - Class in org.jfree.data.time

A dynamic dataset.

DynamicTimeSeriesCollection(int, int) - Constructor for class org.jfree.data.time.DynamicTimeSeriesCollection

Constructs a dataset with capacity for N series, tied to default timezone.

DynamicTimeSeriesCollection(int, int, TimeZone) - Constructor for class org.jfree.data.time.DynamicTimeSeriesCollection

Constructs an empty dataset, tied to a specific timezone.

DynamicTimeSeriesCollection(int, int, RegularTimePeriod) - Constructor for class org.jfree.data.time.DynamicTimeSeriesCollection

Creates a new dataset.

DynamicTimeSeriesCollection(int, int, RegularTimePeriod, TimeZone) - Constructor for class org.jfree.data.time.DynamicTimeSeriesCollection

Creates a new dataset.

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _
All Classes|All Packages