N-Index (Vanted 2.8.3 API)

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N

NaivePatternFinderAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder: Finds pattern within a given target graph.
NaivePatternFinderAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.NaivePatternFinderAlgorithm: Creates a new NaivePatternFinderAlgorithm object.
NaivePatternFinderPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder: The plugin wrapper for the NaivePatternFinderAlgorithm.
NaivePatternFinderPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.NaivePatternFinderPlugin: Constructor for the Plugin.
name - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartsColumnAttribute
NAME - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter.QueryType
NAME - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathGene
NAME - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathMolecule
NAME - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathPathway
NAME - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
NAME - Static variable in class org.graffiti.plugins.ios.importers.gml.sym
NAME_ATTRIBUTE_LITERAL - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLConstants
NamedColorSet - Class in org
NamedColorSet() - Constructor for class org.NamedColorSet
NAMESPACE - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
namespaceCollector - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_SBase_Reader: Stores the namespaces which already has been added to the graph tab
nan(double) - Static method in class org.graffiti.util.GeneralUtils: DOCUMENT ME!
nat_l - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.springembedder_1.SpringEmbedderAlgorithm: natural (zero energy) length of spring between two connected nodes, see Graph Drawing p.
NavigationComponentView - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation: provides an overview view with navigation window, which allows to browse the network.
NavigationComponentView() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation.NavigationComponentView
NavigationTree - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter
NavigationTree(TreeSet<String>, HashMap<String, String>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.NavigationTree
NEARSOURCE - org.AlignmentSetting
NEARSOURCE - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants: Constant used to specify the position of a label according to a node.
NEARTARGET - org.AlignmentSetting
NEARTARGET - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants: Constant used to specify the position of a label according to a node.
NeedEditComponents - Interface in org.graffiti.plugin.editcomponent
NEEDLE_TYPES - Static variable in class org.jfree.chart.demo.CompassDemo: The available needle types.
needsEditComponents() - Method in interface org.graffiti.plugin.GenericPlugin: States whether this class needs up-to-date information about the current editcomponents.
needsEditComponents() - Method in class org.graffiti.plugin.GenericPluginAdapter: States whether this class needs up-to-date information about the current editcomponents.
needsEditComponents() - Method in class org.graffiti.plugins.inspectors.defaults.Inspector: Inspector relies on the edit components to be up-to-date.
NeedsSwingThread - Interface in de.ipk_gatersleben.ag_nw.graffiti
NEGATIVE_X_VALUE - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayError
NEGATIVE_Y_VALUE - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayError
neighbour(Variable) - Method in class placement.Constraint
net.iharder.dnd - package net.iharder.dnd
NEW_DATASET - Static variable in class org.jfree.chart.event.ChartChangeEvent: Event type indicating that the chart has a new dataset.
newCoarseningLevel() - Method in class org.vanted.plugins.layout.multilevelframework.MultilevelGraph: Create a new coarsening level, based on the current top one (i.e.
newEdges - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.SplitResult
newEdges - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.MapResult
newFifteenMinuteTimeline() - Static method in class org.jfree.chart.axis.SegmentedTimeline: Factory method to create a 15-min, 9:00 AM thought 4:00 PM, Monday through Friday SegmentedTimeline.
newline - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network.TabAglet
newMondayThroughFridayTimeline() - Static method in class org.jfree.chart.axis.SegmentedTimeline: Factory method to create a Monday through Friday SegmentedTimeline.
newNodes - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.SplitResult
newNodes - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.MapResult
NewsHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow
NewsHelper(WorkflowHelper) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.NewsHelper
next() - Method in class org.graffiti.util.MultipleIterator: Returns the next element of the iteration.
next() - Method in class org.graffiti.util.RedundantMultipleIterator: Deprecated.

Returns the next element of the iteration.
next() - Method in class org.jfree.data.time.Day: Returns the day following this one, or null if some limit has been reached.
next() - Method in class org.jfree.data.time.FixedMillisecond: Returns the millisecond following this one.
next() - Method in class org.jfree.data.time.Hour: Returns the hour following this one.
next() - Method in class org.jfree.data.time.Millisecond: Returns the millisecond following this one.
next() - Method in class org.jfree.data.time.Minute: Returns the minute following this one.
next() - Method in class org.jfree.data.time.Month: Returns the month following this one.
next() - Method in class org.jfree.data.time.Quarter: Returns the quarter following this one.
next() - Method in class org.jfree.data.time.RegularTimePeriod: Returns the time period following this one, or null if some limit has been reached.
next() - Method in class org.jfree.data.time.Second: Returns the second following this one.
next() - Method in class org.jfree.data.time.Week: Returns the week following this one.
next() - Method in class org.jfree.data.time.Year: Returns the year following this one.
nextDouble() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe.StringScanner
nextInt() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe.StringScanner
nextNotQuotedString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe.StringScanner
nextStep() - Method in interface org.graffiti.plugin.algorithm.AnimatedAlgorithm: Executes the next step of the algorithm.
nextString(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe.StringScanner: Returns the next String value, must be enclosed by a given start and end character e.g.
NimbusScaler - Class in org.vanted.scaling.scalers: It is sufficient enough to rescale only the default font, this fires a property change and Nimbus does the rest alone.
NimbusScaler(float) - Constructor for class org.vanted.scaling.scalers.NimbusScaler
NO_DST_TIME_ZONE - Static variable in class org.jfree.chart.axis.SegmentedTimeline: Utility TimeZone object that has no DST and an offset equal to the default TimeZone.
NO_ENTRY_ELEMENTS_DEFINED - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayWarning
NO_FRAME - org.LabelFrameSetting
NO_KEGG_LABEL - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayWarning
NO_LABELS - Static variable in class org.jfree.chart.plot.CompassPlot: A constant for the label type.
NO_LABELS - Static variable in class org.jfree.chart.plot.MeterPlot: Constant for the label type.
NO_OPTIONS - Static variable in class org.graffiti.plugins.ios.exporters.graphml.Base64: No options specified.
NO_OPTIONS - Static variable in class org.graffiti.plugins.ios.importers.graphml.parser.Base64: No options specified.
NO_PREFERRED_WIDTH - Static variable in class org.jfree.chart.StandardLegend: Used with StandardLegend.setPreferredWidth(double) to indicate that no preferred width is desired and defaults are to be used.
NO_REACTION_ELEMENTS_DEFINED - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayWarning
NO_RELATION_ELEMENTS_DEFINED - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayWarning
NO_ZOOM - Static variable in interface org.graffiti.plugin.view.View: Standard zoom value.
NoCollectionAttributeException - Exception in org.graffiti.attributes: The NoCollectionAttributeException will be thrown if a method tries to add an attribute to an attribute which is no CollectionAttribute.
node - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.MyComparableNode
node - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.NodeCacheEntry: Reference to the node in the graph.
node - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.NodeCacheEntry3d: Reference to the node in the graph.
Node - Interface in org.graffiti.graph: Provides an interfaces for a graph node.
NODE - org.graffiti.plugin.algorithm.Category
NODE - Static variable in class org.graffiti.plugins.ios.importers.gml.sym
NODE_ELEMENT_LITERAL - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLConstants
NODE_INDEX - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.PatternAttributeUtils: The attribute name for the node index.
NODE_STYLE - Static variable in class org.graffiti.plugins.ios.importers.gml.sym
node2cluster - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.ClusterBackgroundDraw
node2position - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.ClusterBackgroundDraw
NodeAdapter - Class in org.graffiti.event: Adapter for the NodeListener interface, providing default empty implementation.
NodeAdapter() - Constructor for class org.graffiti.event.NodeAdapter
nodeArray - Variable in class org.graffiti.plugin.algorithm.ThreadSafeOptions: Vecor node array, contains patternNodeStruct objects, which saves/caches the information about pattern type and number for all nodes of a graph
NodeBorder - Class in org.graffiti.plugin.tool: DOCUMENT ME!
NodeBorder(Color, int) - Constructor for class org.graffiti.plugin.tool.NodeBorder: Constructor for NodeBorder.
NodeCacheEntry - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder: Saves the information about pattern type and number for all nodes of a graph
NodeCacheEntry() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.NodeCacheEntry
NodeCacheEntry3d - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder: Saves the information about pattern type and number for all nodes of a graph
NodeCacheEntry3d() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.NodeCacheEntry3d
NodeCombination - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml
NodeCombination(Node, Node, boolean, boolean, ReactionType) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.NodeCombination
nodeCommand - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.BSHinfo
NodeComponent - Class in org.graffiti.plugins.views.defaults: This component represents a org.graffiti.graph.Node.
NodeComponent(GraphElement) - Constructor for class org.graffiti.plugins.views.defaults.NodeComponent: Constructor for NodeComponent.
NodeComponentInterface - Interface in org.graffiti.plugin.view: This component represents a org.graffiti.graph.Node.
NodeCountAccumulator - Class in org.vanted.indexednodes.accumulators
NodeCountAccumulator(Integer) - Constructor for class org.vanted.indexednodes.accumulators.NodeCountAccumulator
NodeEditComponent - Class in org.graffiti.plugin.editcomponent: This class provides an edit component for selecting a single node.
NodeEditComponent(Displayable) - Constructor for class org.graffiti.plugin.editcomponent.NodeEditComponent: Constructs a new NodeEditComponent.
NodeEvent - Class in org.graffiti.event: Contains a node event.
NodeEvent(Node, Edge) - Constructor for class org.graffiti.event.NodeEvent: Constructs a graph event object with the specified source components.
NodeGradientRenderer() - Constructor for class org.graffiti.plugins.views.defaults.GradientFillAttributeEditor.NodeGradientRenderer
NodeGraphicAttribute - Class in org.graffiti.graphics: Defines all grahic attributes of a node
NodeGraphicAttribute() - Constructor for class org.graffiti.graphics.NodeGraphicAttribute: Constructor for NodeGraphicAttribute.
NodeGraphicAttribute(double, double, double, double, PortsAttribute) - Constructor for class org.graffiti.graphics.NodeGraphicAttribute: Constructor for NodeGraphicAttribute.
NodeGraphicAttribute(Point2D, Dimension) - Constructor for class org.graffiti.graphics.NodeGraphicAttribute
NodeGraphicAttribute(Point2D, Dimension, PortsAttribute) - Constructor for class org.graffiti.graphics.NodeGraphicAttribute: Constructor for NodeGraphicAttribute.
NodeGraphicAttribute(String) - Constructor for class org.graffiti.graphics.NodeGraphicAttribute: Constructor that sets the id to the given value, and initializes the other attributes with default values.
NodeGraphicAttribute(CoordinateAttribute, DimensionAttribute, PortsAttribute) - Constructor for class org.graffiti.graphics.NodeGraphicAttribute: Constructor for NodeGraphicAttribute.
NodeHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper
NodeHelper(Node) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
NodeHelper(Node, boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
NodeHierarchy - Interface in org.graffiti.graph
nodeIndex - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.NodeCacheEntry: Saves the index of the node in the graph-array.
nodeIndex - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.NodeCacheEntry3d: Saves the index of the node in the graph-array.
NodeLabelAttribute - Class in org.graffiti.graphics: DOCUMENT ME!
NodeLabelAttribute(String) - Constructor for class org.graffiti.graphics.NodeLabelAttribute: Constructor for NodeLabelAttribute.
NodeLabelAttribute(String, String) - Constructor for class org.graffiti.graphics.NodeLabelAttribute: Constructor for NodeLabelAttribute.
NodeLabelPositionAttribute - Class in org.graffiti.graphics: DOCUMENT ME!
NodeLabelPositionAttribute(String) - Constructor for class org.graffiti.graphics.NodeLabelPositionAttribute: Constructor for NodeLabelPositionAttribute.
NodeLabelPositionAttribute(String, double, double, double) - Constructor for class org.graffiti.graphics.NodeLabelPositionAttribute: Constructor for NodeLabelPositionAttribute.
NodeLabelPositionAttribute(String, DoubleAttribute, DoubleAttribute, DoubleAttribute) - Constructor for class org.graffiti.graphics.NodeLabelPositionAttribute: Constructor for NodeLabelPositionAttribute.
NodeListener - Interface in org.graffiti.event: Interface that contains methods which are called when a node is changed.
NodeNotContainedException() - Constructor for exception org.vanted.indexednodes.IndexedNodeSet.NodeNotContainedException
NodeOrEdge - Enum in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection
NodePair - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kgml
NodePair(Node, Node) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kgml.NodePair
NodeParameter - Class in org.graffiti.plugin.parameter: This class contains a single Node.
NodeParameter(Graph, Node, String, String) - Constructor for class org.graffiti.plugin.parameter.NodeParameter: Constructs a new node parameter.
NodePathwayLinkVisualizationAttribute - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references
NodePathwayLinkVisualizationAttribute() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.NodePathwayLinkVisualizationAttribute
NodePathwayLinkVisualizationAttribute(String, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.NodePathwayLinkVisualizationAttribute
NodePathwayLinkVisualizationAttributeEditor - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references
NodePathwayLinkVisualizationAttributeEditor(Displayable) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.NodePathwayLinkVisualizationAttributeEditor
NodePosition - Class in org.graffiti.plugin.algorithm: DOCUMENT ME!
nodes - Variable in class org.vanted.indexednodes.IndexedComponent
Nodes - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.NodeOrEdge
NodesAndEdges - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.NodeOrEdge
nodesDistance - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.WorkSettings
nodeSearch - Variable in class org.graffiti.plugin.algorithm.ThreadSafeOptions: Used for search from Node to NodeCacheEntry (which includes the Node)
NodeShape - Interface in org.graffiti.plugin.view: Interface extending GraphElementShape.
NodeShapeAttribute - Class in org.graffiti.attributes: "Tagging" class only.
NodeShapeAttribute(String, String) - Constructor for class org.graffiti.attributes.NodeShapeAttribute: Creates a new NodeShapeAttribute object.
NodeShapeCellRenderer - Class in org.graffiti.plugins.editcomponents.defaults
NodeShapeCellRenderer() - Constructor for class org.graffiti.plugins.editcomponents.defaults.NodeShapeCellRenderer
NodeShapeEditComponent - Class in org.graffiti.plugins.editcomponents.defaults: Class used to display different node shapes.
NodeShapeEditComponent(Displayable) - Constructor for class org.graffiti.plugins.editcomponents.defaults.NodeShapeEditComponent: Constructor sets the correct entries of the combo box.
nodesIn1 - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.WorkTask
NodeSortCommand - Enum in de.ipk_gatersleben.ag_nw.graffiti
NodeTab - Class in org.graffiti.plugins.inspectors.defaults: Represents the tab of the inspector, which edits the properties of a node.
NodeTab() - Constructor for class org.graffiti.plugins.inspectors.defaults.NodeTab: Constructs a NodeTab and sets the title.
nodeThresholdActive() - Method in class org.vanted.plugins.layout.stressminimization.StressMinParamModel.TerminationCheckboxGroup
NodeTools - Class in de.ipk_gatersleben.ag_nw.graffiti
NodeTools() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.NodeTools
nodeTypeDefault - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttribute
nodeTypeFastSimple - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttribute
nodeTypeSubstrate - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttribute
noGivenTimeStringConstant - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper
NON_POSITIVE_HEIGHT_VALUE - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayWarning
NON_POSITIVE_WIDTH_VALUE - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayWarning
NON_RDF_ANNOTATION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
NONE - org.graffiti.plugins.views.defaults.DockingAttributeEditor.DockingModes
NONE - org.graffiti.plugins.views.defaults.GradientFillAttributeEditor.NodeGradientModes
NONE - Static variable in class org.jfree.chart.plot.ThermometerPlot: A constant for the value label position (no label).
NoNextStepException - Exception in org.graffiti.plugin.algorithm: DOCUMENT ME!
NoNextStepException() - Constructor for exception org.graffiti.plugin.algorithm.NoNextStepException
nonGraphicAttributeChanged(Attribute) - Method in interface org.graffiti.plugin.view.GraphElementComponentInterface: Called when a non-graphic attribute of the GraphElement represented by this component has changed.
nonGraphicAttributeChanged(Attribute) - Method in class org.graffiti.plugins.views.defaults.AbstractGraphElementComponent: Called when a non-graphic attribute of the GraphElement represented by this component has changed.
nonGraphicAttributeChanged(Attribute) - Method in class org.graffiti.plugins.views.defaults.NodeComponent
NonGridContourDataset - Class in org.jfree.data: A convenience class that extends the DefaultContourDataset to acommadate non-grid data.
NonGridContourDataset() - Constructor for class org.jfree.data.NonGridContourDataset: Default constructor.
NonGridContourDataset(String, Object[], Object[], Object[]) - Constructor for class org.jfree.data.NonGridContourDataset: Constructor for NonGridContourDataset.
NonGridContourDataset(String, Object[], Object[], Object[], int, int, int) - Constructor for class org.jfree.data.NonGridContourDataset: Constructor for NonGridContourDataset.
nonInteractiveAlgorithm - Variable in class org.vanted.plugins.layout.multilevelframework.MultilevelFrameworkLayout
nonInteractiveMerger - Variable in class org.vanted.plugins.layout.multilevelframework.MultilevelFrameworkLayout
nonInteractivePlacer - Variable in class org.vanted.plugins.layout.multilevelframework.MultilevelFrameworkLayout
NoOverlappLayoutAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_no_overlapp: Epands the layout to remove any overlapping of nodes.
NoOverlappLayoutAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_no_overlapp.NoOverlappLayoutAlgorithm
NoOverlappLayoutAlgorithm(int, boolean, boolean, boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_no_overlapp.NoOverlappLayoutAlgorithm
NoOverlappLayoutAlgorithmAS - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.no_overlapp_as_tim: Epands the layout to remove any overlapping of nodes.
NoOverlappLayoutAlgorithmAS() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.no_overlapp_as_tim.NoOverlappLayoutAlgorithmAS
NoOverlappLayoutAlgorithmAS(int, int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.no_overlapp_as_tim.NoOverlappLayoutAlgorithmAS
NoOverlappLayouterPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_no_overlapp
NoOverlappLayouterPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.no_overlapp_as_tim: Plugin container for Tims no overlapp algorithm AS.
NoOverlappLayouterPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_no_overlapp.NoOverlappLayouterPlugin
NoOverlappLayouterPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.no_overlapp_as_tim.NoOverlappLayouterPlugin
NoOverlappOfClustersAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.graph_to_origin_mover
NoOverlappOfClustersAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.graph_to_origin_mover.NoOverlappOfClustersAlgorithm
NORMAL - de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping.DataMapping.ShowMappingResults
NORMAL - org.graffiti.plugins.views.defaults.DrawMode
NORMAL - Static variable in class org.jfree.chart.plot.ThermometerPlot: A constant for the 'normal' range.
NORMAL_DATA - Static variable in interface org.jfree.data.MeterDataset: Deprecated.

A constant representing the 'normal' level.
NORMAL_DATA_RANGE - Static variable in class org.jfree.chart.plot.MeterPlot: Constant to indicate the normal data range.
NORMAL_TEXT - Static variable in class org.jfree.chart.plot.MeterPlot: The default text for the normal level.
NormalDistributionDemo - Class in org.jfree.chart.demo: This demo shows a normal distribution function.
NormalDistributionDemo(String) - Constructor for class org.jfree.chart.demo.NormalDistributionDemo: A demonstration application showing a normal distribution.
NormalDistributionFunction2D - Class in org.jfree.data: A normal distribution function.
NormalDistributionFunction2D(double, double) - Constructor for class org.jfree.data.NormalDistributionFunction2D: Constructs a new normal distribution function.
NormalizedMatrixSeries - Class in org.jfree.data: Represents a dense normalized matrix M[i,j] where each Mij item of the matrix has a value (default is 0).
NormalizedMatrixSeries(String, int, int) - Constructor for class org.jfree.data.NormalizedMatrixSeries: Constructor for NormalizedMatrixSeries.
NormalP(double) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.StatisticTable
Normz(double) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.StatisticTable
NORTH - Static variable in class org.jfree.chart.Legend: Constant anchor value for legend position NORTH.
NORTH - Static variable in class org.jfree.chart.title.Title: Useful constant for the title position.
NORTH_NORTHEAST - Static variable in class org.jfree.chart.Legend: Constant anchor value for legend position NORTH_NORTHEAST.
NORTH_NORTHWEST - Static variable in class org.jfree.chart.Legend: Constant anchor value for legend position NORTH_NORTHWEST.
NOT - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter.QueryAdvanced
NOT - de.ipk_gatersleben.ag_nw.graffiti.services.algorithms.SearchAlgorithms.LogicalOp
NOT_IMPLEMENTED_GML2COMPONENT - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayWarning
NOT_SELECTED - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.TristateCheckBox
NOT_UPDATED - org.UpdateInfoResult
NotAnAddon - de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.AddOnInstallResult
noteRequest() - Method in interface org.graffiti.editor.MemoryHog
NOTES - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
notifyListeners(PlotChangeEvent) - Method in class org.jfree.chart.plot.Plot: Notifies all registered listeners that the plot has been modified.
notifyListeners(RendererChangeEvent) - Method in class org.jfree.chart.renderer.AbstractRenderer: Notifies all registered listeners that the renderer has been modified.
notifySBML() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter
NotIndexedException(String, Throwable) - Constructor for exception org.vanted.indexednodes.IndexedNodeSet.NotIndexedException
NotOutlierException - Exception in org.jfree.chart.renderer: An exception that is generated by the Outlier, OutlierList and OutlierListCollection classes.
NotOutlierException(String) - Constructor for exception org.jfree.chart.renderer.NotOutlierException: Creates a new exception.
NucleicAcidFeatureShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
NucleicAcidFeatureShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.NucleicAcidFeatureShape
NULL_NODE - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.UllmannSubraphIsomAdjMatrixState: The integer value for "not a node at all".
NullLayoutAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle
NullLayoutAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.NullLayoutAlgorithm: Creates a new CircleLayouterAlgorithm object.
NullView - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview
NullView() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
NumberAxis - Class in org.jfree.chart.axis: An axis for displaying numerical data.
NumberAxis() - Constructor for class org.jfree.chart.axis.NumberAxis: Default constructor.
NumberAxis(String) - Constructor for class org.jfree.chart.axis.NumberAxis: Constructs a number axis, using default values where necessary.
NumberAxis3D - Class in org.jfree.chart.axis: A standard linear value axis, for values displayed vertically.
NumberAxis3D() - Constructor for class org.jfree.chart.axis.NumberAxis3D: Default constructor.
NumberAxis3D(String) - Constructor for class org.jfree.chart.axis.NumberAxis3D: Constructs a new axis.
NumberEditComponent - Class in org.graffiti.plugin.editcomponent: NumberEditComponent provides an abstract implementation for editing numerical attributes.
numberGraphElements() - Method in class org.graffiti.graph.AdjListGraph: Empty implementation, since we do not support this anymore
numberGraphElements() - Method in interface org.graffiti.graph.Graph: This method should number (setId all nodes globally unique.
NumberNodesAndEdgesAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup: Labels all selected nodes with unique numbers.
NumberNodesAndEdgesAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup.NumberNodesAndEdgesAlgorithm: Constructs a new instance.
NumberOfLoops - Enum in org.vanted.animation: Represents the number of times an animation is repeated.
Primarily exists to prevent confusion about setting noLoops to infinity (-1).
numberOfOnes(String) - Static method in class org.graffiti.util.GeneralUtils: Returns the number of "1"s within the string s.
NumberTick - Class in org.jfree.chart.axis: A numerical tick.
NumberTick(Number, String, TextAnchor, TextAnchor, double) - Constructor for class org.jfree.chart.axis.NumberTick: Creates a new tick.
NumberTickUnit - Class in org.jfree.chart.axis: A numerical tick unit.
NumberTickUnit(double) - Constructor for class org.jfree.chart.axis.NumberTickUnit: Creates a new number tick unit.
NumberTickUnit(double, NumberFormat) - Constructor for class org.jfree.chart.axis.NumberTickUnit: Creates a new number tick unit.
NumericMeasurement - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper
NumericMeasurement(Measurement, String, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurement: Builds up a new hierarchy for a newly created MeasurementData.
NumericMeasurement(SampleInterface) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurement
NumericMeasurement(SampleInterface, Map<?, ?>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurement
NumericMeasurementInterface - Interface in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper

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