T-Index (Vanted 2.8.3 API)

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T

TAB_LAYOUT - org.FeatureSet
TAB_LEADING - Static variable in class org.graffiti.plugin.inspector.InspectorTab
TAB_PATTERNSEARCH - org.FeatureSet
TAB_RANDOM - Static variable in class org.graffiti.plugin.inspector.InspectorTab
TAB_TRAILING - Static variable in class org.graffiti.plugin.inspector.InspectorTab
TabAglet - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network: Represents the tab, which contains the functionality to edit the attributes of the current graph object.
TabAglet() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network.TabAglet: Constructs a PatternTab and sets the title.
TabBiomodels - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels
TabBiomodels() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.TabBiomodels
TabDBE - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe
TabDBE() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TabDBE: Constructs a PatternTab and sets the title.
TabExampleFiles - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow
TabExampleFiles() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.TabExampleFiles
TabKegg - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg
TabKegg() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.TabKegg
tableChanged(TableModelEvent) - Method in class org.graffiti.managers.pluginmgr.PluginManagerDialog: Called if the contents of the pluginsTable changed.
TableData - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe
TableData() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData
TableData(TableData, boolean, int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData
TableDataTest - Class in qmwi.kseg.som.diagram: Insert the type's description here.
TableDataTest() - Constructor for class qmwi.kseg.som.diagram.TableDataTest: LeftWindowTableData constructor comment.
TableDataTest(DataSet) - Constructor for class qmwi.kseg.som.diagram.TableDataTest: Insert the method's description here.
TableLayout - Class in info.clearthought.layout: TableLayout is a layout manager that arranges components in rows and columns like a spreadsheet.
TableLayout() - Constructor for class info.clearthought.layout.TableLayout: Constructs an instance of TableLayout.
TableLayout(double[][]) - Constructor for class info.clearthought.layout.TableLayout: Constructs an instance of TableLayout.
TableLayoutConstants - Interface in info.clearthought.layout: Constants used by TableLayout.
TableLayoutConstraints - Class in info.clearthought.layout: The following inner class is used to bind components to their constraints.
TableLayoutConstraints() - Constructor for class info.clearthought.layout.TableLayoutConstraints: Constructs an TableLayoutConstraints with the default settings.
TableLayoutConstraints(int, int, int, int, int, int) - Constructor for class info.clearthought.layout.TableLayoutConstraints: Constructs an TableLayoutConstraints a set of constraints.
TableLayoutConstraints(String) - Constructor for class info.clearthought.layout.TableLayoutConstraints: Constructs an TableLayoutConstraints from a string.
TableXYDataset - Interface in org.jfree.data: A dataset containing one or more data series containing (x, y) data items, where all series in the dataset share the same set of x-values.
TabMetaCrop - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop
TabMetaCrop() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.TabMetaCrop
TabMetaCrop(String, String, String, String, String, boolean, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.TabMetaCrop
TabNetworkAlgorithms - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network
TabNetworkAlgorithms() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network.TabNetworkAlgorithms
TabPatternLayout - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control: Represents the tab, which contains the functionality to edit the attributes of the current graph object.
TabPatternLayout() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPatternLayout: * Constructs a PatternTab and sets the title.
TabPluginControl - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control: Represents the tab, which contains the functionality to edit the attributes of the current graph object.
TabPluginControl() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPluginControl: Constructs a PatternTab and sets the title.
TabStatistics - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics
TabStatistics() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics: Constructs a PatternTab and sets the title.
TabVisualisationControl - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control: Deprecated.
Do not use, will be removed in future.
TabVisualisationControl() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabVisualisationControl: Deprecated.

Constructs a PatternTab and sets the title.
TagDownShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
TagDownShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TagDownShape
TagLeftShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
TagLeftShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TagLeftShape
TagRightShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
TagRightShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TagRightShape
TagUpShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
TagUpShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TagUpShape
TAPER - Static variable in class org.jfree.chart.renderer.AreaRendererEndType: The area tapers from the first or last value down to zero.
TARGET - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
TARGET - Static variable in class org.graffiti.plugins.ios.importers.gml.sym
TARGET_ATTRIBUTE_LITERAL - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLConstants
targetCountEdges - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.MapResult
targetCountNodes - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.MapResult
TargetDockingAttribute - Class in org.graffiti.graphics
TargetDockingAttribute() - Constructor for class org.graffiti.graphics.TargetDockingAttribute
TargetDockingAttribute(String, String) - Constructor for class org.graffiti.graphics.TargetDockingAttribute
targetMenu - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.BSHinfo
targetY - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.TargetYandNewNodeResult
TargetYandNewNodeResult - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references
TargetYandNewNodeResult(double, Node) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.TargetYandNewNodeResult
Task - Class in org.jfree.data.gantt: A simple representation of a task.
Task(String, Date, Date) - Constructor for class org.jfree.data.gantt.Task: Creates a new task.
Task(String, TimePeriod) - Constructor for class org.jfree.data.gantt.Task: Creates a new task.
TaskSeries - Class in org.jfree.data.gantt: A series that contains zero, one or many Task objects.
TaskSeries(String) - Constructor for class org.jfree.data.gantt.TaskSeries: Constructs a new series with the specified name.
TaskSeriesCollection - Class in org.jfree.data.gantt: A collection of TaskSeries objects.
TaskSeriesCollection() - Constructor for class org.jfree.data.gantt.TaskSeriesCollection: Default constructor.
TAXONOMY - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter.QueryType
TeeStream - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml
TeeStream(PrintStream, PrintStream) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.TeeStream
teinseitig(int, double) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.StatisticTable
temp_alpha - Variable in class org.graffiti.plugin.algorithm.ThreadSafeOptions: Run parameter.
temperature_max_move - Variable in class org.graffiti.plugin.algorithm.ThreadSafeOptions: Run parameter.
Template - Class in de.ipk_gatersleben.ag_pbi.datahandling
Template() - Constructor for class de.ipk_gatersleben.ag_pbi.datahandling.Template
TemplateFile - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe
TemplateFile(String, URL, RunnableForFile) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TemplateFile
TemplateFileManager - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe
TemplateLoader - Class in de.ipk_gatersleben.ag_pbi.datahandling
TemplateLoader() - Constructor for class de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoader
TemplateLoaderInstance - Class in de.ipk_gatersleben.ag_pbi.datahandling
TemplateLoaderInstance(File, TemplateLoader) - Constructor for class de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoaderInstance
TemplateLoaderInterface - Interface in de.ipk_gatersleben.ag_pbi.datahandling
TemplateManager - Class in de.ipk_gatersleben.ag_pbi.datahandling
Test - Class in qmwi.kseg.som.diagram: Insert the type's description here.
Test() - Constructor for class qmwi.kseg.som.diagram.Test: Test constructor comment.
testGML2Pathway2GML() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway
TestImageExport - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter
TestImageExport() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.TestImageExport
testShowPathwayComparison(Pathway, Pathway, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway: Compare two pathways
testShowPathwayInfo(Pathway) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway
Testttt - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance
Testttt() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.Testttt
TestValueRequired - Annotation Type in unit_test_support: Use this annotation to ensure that value used by the random property setter is different from NULL.
TextAnnotation - Class in org.jfree.chart.annotations: A base class for text annotations.
TextAreaEditComponent - Class in org.graffiti.plugins.editcomponents.defaults: DOCUMENT ME!
TextAreaEditComponent(StringAttribute) - Constructor for class org.graffiti.plugins.editcomponents.defaults.TextAreaEditComponent: Constructor for TextAreaEditComponent.
TextAreaEditComponent(Displayable) - Constructor for class org.graffiti.plugins.editcomponents.defaults.TextAreaEditComponent: Constructor for TextAreaEditComponent.
TEXTCOLOR - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
TextFile - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart
TextFile() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.TextFile
TextFile(InputStream, int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.TextFile
TextFile(Reader) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.TextFile
TextFile(String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.TextFile
TextFile(URL) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.TextFile
TextFile(URL, boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.TextFile
TextFileColumnInformation - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression
TextFileColumnInformation(String, int, Integer) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.TextFileColumnInformation
TextListReader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list: edges in list form S T W (header) a b 0.3 c b 0.7 % comment a c 1.0 or simple text format (see http://www.graphdrawing.de/contest2009/gdcategories2009.html): # Nodes Id1,40,40,20,20 Id2,40,40,100,100 Id3,40,40 # Edges Id1,Id2,40,20,100,20,100,80 Id3,Id2
TextListReader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list.TextListReader
TextListReaderPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list
TextListReaderPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list.TextListReaderPlugin
TextTitle - Class in org.jfree.chart.title: A chart title that displays a text string.
TextTitle() - Constructor for class org.jfree.chart.title.TextTitle: Creates a new title, using default attributes where necessary.
TextTitle(String) - Constructor for class org.jfree.chart.title.TextTitle: Creates a new title, using default attributes where necessary.
TextTitle(String, Font) - Constructor for class org.jfree.chart.title.TextTitle: Creates a new title, using default attributes where necessary.
TextTitle(String, Font, Paint) - Constructor for class org.jfree.chart.title.TextTitle: Creates a new title, using default attributes where necessary.
TextTitle(String, Font, Paint, RectangleEdge, HorizontalAlignment, VerticalAlignment, Spacer) - Constructor for class org.jfree.chart.title.TextTitle: Creates a new title.
TextTitle(String, Font, HorizontalAlignment) - Constructor for class org.jfree.chart.title.TextTitle: Creates a new title, using default attributes where necessary.
then(StatefulAccumulator<?, O>) - Method in class org.vanted.indexednodes.accumulators.StatefulAccumulator: Compose with another accumulator
ThermometerDemo - Class in org.jfree.chart.demo: A demonstration application for the thermometer plot.
ThermometerDemo() - Constructor for class org.jfree.chart.demo.ThermometerDemo: Default constructor.
ThermometerDemo2 - Class in org.jfree.chart.demo: A simple demonstration application showing how to create a thermometer.
ThermometerDemo2(String) - Constructor for class org.jfree.chart.demo.ThermometerDemo2: Creates a new demo.
ThermometerPlot - Class in org.jfree.chart.plot: A plot that displays a single value (from a ValueDataset) in a thermometer type display.
ThermometerPlot() - Constructor for class org.jfree.chart.plot.ThermometerPlot: Creates a new thermometer plot.
ThermometerPlot(ValueDataset) - Constructor for class org.jfree.chart.plot.ThermometerPlot: Creates a new thermometer plot, using default attributes where necessary.
THICKNESS - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants: Thickness of the Arrow Head (may be "1" for "auto-size")
ThicknessAttribute - Class in org.graffiti.graphics
ThicknessAttribute(String) - Constructor for class org.graffiti.graphics.ThicknessAttribute
ThicknessAttribute(String, double) - Constructor for class org.graffiti.graphics.ThicknessAttribute
ThicknessAttribute(String, Double) - Constructor for class org.graffiti.graphics.ThicknessAttribute
ThicknessAttributeEditor - Class in org.graffiti.plugins.views.defaults
ThicknessAttributeEditor(Displayable) - Constructor for class org.graffiti.plugins.views.defaults.ThicknessAttributeEditor
ThicknessAttributeEditor.ArrowHeadModes - Enum in org.graffiti.plugins.views.defaults
thinCircleArrow - Static variable in class org.graffiti.plugins.editcomponents.defaults.EdgeArrowShapeEditComponent
thinDiamondArrow - Static variable in class org.graffiti.plugins.editcomponents.defaults.EdgeArrowShapeEditComponent
thinStandardArrow - Static variable in class org.graffiti.plugins.editcomponents.defaults.EdgeArrowShapeEditComponent
threadedRedraw - Variable in class org.graffiti.plugins.views.defaults.GraffitiView
ThreadSafeAlgorithm - Class in org.graffiti.plugin.algorithm: DOCUMENT ME!
ThreadSafeAlgorithm() - Constructor for class org.graffiti.plugin.algorithm.ThreadSafeAlgorithm
ThreadSafeOptions - Class in org.graffiti.plugin.algorithm: This class can be used for thread safe communication between user interfaces and plugins.
ThreadSafeOptions() - Constructor for class org.graffiti.plugin.algorithm.ThreadSafeOptions
threadSettingsChanged - Variable in class org.graffiti.plugin.algorithm.ThreadSafeOptions: A second variable for changed settigns.
THREE - org.vanted.animation.NumberOfLoops
throwFileNew() - Method in class org.graffiti.editor.actions.FileHandlingManager
throwFileOpened(File) - Method in class org.graffiti.editor.actions.FileHandlingManager
throwFileSaved(File, String, Graph) - Method in class org.graffiti.editor.actions.FileHandlingManager
throwFileSavedAs(File, File) - Method in class org.graffiti.editor.actions.FileHandlingManager
Tick - Class in org.jfree.chart.axis: Represents the dimensions of a tick on an axis (used during the process of drawing a chart, but not retained).
Tick(String, TextAnchor, TextAnchor, double) - Constructor for class org.jfree.chart.axis.Tick: Creates a new tick.
TickLabelEntity - Class in org.jfree.chart.entity: A chart entity representing a tick label.
TickLabelEntity(Shape, String, String) - Constructor for class org.jfree.chart.entity.TickLabelEntity: Creates a new entity.
TickUnit - Class in org.jfree.chart.axis: Base class representing a tick unit.
TickUnit(double) - Constructor for class org.jfree.chart.axis.TickUnit: Constructs a new tick unit.
TickUnits - Class in org.jfree.chart.axis: A collection of tick units.
TickUnits() - Constructor for class org.jfree.chart.axis.TickUnits: Constructs a new collection of tick units.
TickUnitSource - Interface in org.jfree.chart.axis: An interface used by the DateAxis and NumberAxis classes to obtain a suitable TickUnit.
Tie - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics
Tie(double, int, double) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.Tie
TILED - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
TIME_UNITS - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
TimeAndPlantName - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe
TimeAndPlantName(String, int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TimeAndPlantName
TimeAndTimeUnit - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes
TimeAndTimeUnit(String, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.TimeAndTimeUnit
timeDefaultBeatTime - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network.BroadCastTask
Timeline - Interface in org.jfree.chart.axis: An interface that defines the contract for a Timeline.
TimePeriod - Interface in org.jfree.data.time: A period of time measured to millisecond precision using java.util.Date.
TimePeriodAnchor - Class in org.jfree.data.time: Used to indicate one of three positions in a time period: START, MIDDLE and END.
TimePeriodFormatException - Exception in org.jfree.data.time: An exception that indicates an invalid format in a string representing a time period.
TimePeriodFormatException(String) - Constructor for exception org.jfree.data.time.TimePeriodFormatException: Creates a new exception.
TimePeriodValue - Class in org.jfree.data.time: Represents a time period and an associated value.
TimePeriodValue(TimePeriod, double) - Constructor for class org.jfree.data.time.TimePeriodValue: Constructs a new data pair.
TimePeriodValue(TimePeriod, Number) - Constructor for class org.jfree.data.time.TimePeriodValue: Constructs a new data item.
TimePeriodValues - Class in org.jfree.data.time: A structure containing zero, one or many TimePeriodValue instances.
TimePeriodValues(String) - Constructor for class org.jfree.data.time.TimePeriodValues: Creates a new (empty) collection of time period values.
TimePeriodValues(String, String, String) - Constructor for class org.jfree.data.time.TimePeriodValues: Creates a new time series that contains no data.
TimePeriodValuesCollection - Class in org.jfree.data.time: A collection of TimePeriodValues objects.
TimePeriodValuesCollection() - Constructor for class org.jfree.data.time.TimePeriodValuesCollection: Constructs an empty dataset, tied to the default timezone.
TimePeriodValuesCollection(TimeZone) - Constructor for class org.jfree.data.time.TimePeriodValuesCollection: Deprecated.
The TimeZone is ignored, use an alternative constructor.
TimePeriodValuesCollection(TimePeriodValues) - Constructor for class org.jfree.data.time.TimePeriodValuesCollection: Constructs a dataset containing a single series.
TimePeriodValuesCollection(TimePeriodValues, TimeZone) - Constructor for class org.jfree.data.time.TimePeriodValuesCollection: Deprecated.
TimeZone parameter is not used.
TimePeriodValuesDemo - Class in org.jfree.chart.demo: An example of....
TimePeriodValuesDemo(String) - Constructor for class org.jfree.chart.demo.TimePeriodValuesDemo: A demonstration application showing how to....
TimePeriodValuesDemo2 - Class in org.jfree.chart.demo: An example of....
TimePeriodValuesDemo2(String) - Constructor for class org.jfree.chart.demo.TimePeriodValuesDemo2: A demonstration application showing how to....
TimePeriodValuesDemo3 - Class in org.jfree.chart.demo: This demo shows a bar chart with time based data where the time periods are slightly irregular.
TimePeriodValuesDemo3(String) - Constructor for class org.jfree.chart.demo.TimePeriodValuesDemo3: Creates a new demo instance.
TimePoint<T> - Class in org.vanted.animation.data
TimePoint(double, T) - Constructor for class org.vanted.animation.data.TimePoint
timeS - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow
TimeSeries - Class in org.jfree.data.time: Represents a sequence of zero or more data items in the form (period, value).
TimeSeries(String) - Constructor for class org.jfree.data.time.TimeSeries: Creates a new (empty) time series.
TimeSeries(String, Class) - Constructor for class org.jfree.data.time.TimeSeries: Creates a new (empty) time series.
TimeSeries(String, String, String, Class) - Constructor for class org.jfree.data.time.TimeSeries: Creates a new time series that contains no data.
TimeSeriesCollection - Class in org.jfree.data.time: A collection of time series objects.
TimeSeriesCollection() - Constructor for class org.jfree.data.time.TimeSeriesCollection: Constructs an empty dataset, tied to the default timezone.
TimeSeriesCollection(TimeZone) - Constructor for class org.jfree.data.time.TimeSeriesCollection: Constructs an empty dataset, tied to a specific timezone.
TimeSeriesCollection(TimeSeries) - Constructor for class org.jfree.data.time.TimeSeriesCollection: Constructs a dataset containing a single series (more can be added), tied to the default timezone.
TimeSeriesCollection(TimeSeries, TimeZone) - Constructor for class org.jfree.data.time.TimeSeriesCollection: Constructs a dataset containing a single series (more can be added), tied to a specific timezone.
TimeSeriesDataItem - Class in org.jfree.data.time: Represents one data item in a time series.
TimeSeriesDataItem(RegularTimePeriod, double) - Constructor for class org.jfree.data.time.TimeSeriesDataItem: Constructs a new data item that associates a value with a time period.
TimeSeriesDataItem(RegularTimePeriod, Number) - Constructor for class org.jfree.data.time.TimeSeriesDataItem: Constructs a new data item that associates a value with a time period.
TimeSeriesDemo - Class in org.jfree.chart.demo: An example of a time series chart.
TimeSeriesDemo(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo: A demonstration application showing how to create a simple time series chart.
TimeSeriesDemo10 - Class in org.jfree.chart.demo: A demo showing a time series with per minute data.
TimeSeriesDemo10(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo10: A demonstration application.
TimeSeriesDemo11 - Class in org.jfree.chart.demo: An example of....
TimeSeriesDemo11(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo11: A demonstration application showing how to...
TimeSeriesDemo12 - Class in org.jfree.chart.demo: A demo.
TimeSeriesDemo12(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo12: A demo.
TimeSeriesDemo13 - Class in org.jfree.chart.demo: This demo shows two charts that use weekly data.
TimeSeriesDemo13(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo13: Creates a new demo instance.
TimeSeriesDemo2 - Class in org.jfree.chart.demo: A demo showing a time series (quarterly data) with a null value.
TimeSeriesDemo2(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo2: A demonstration application showing a quarterly time series containing a null value.
TimeSeriesDemo3 - Class in org.jfree.chart.demo: A time series demo, with monthly data, where the tick unit on the axis is set to one month also (this switches off the auto tick unit selection, and *can* result in overlapping labels).
TimeSeriesDemo3(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo3: A demonstration application showing a quarterly time series containing a null value.
TimeSeriesDemo4 - Class in org.jfree.chart.demo: An example of a time series chart using hourly data and including a null value.
TimeSeriesDemo4(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo4: A demonstration application showing a quarterly time series containing a null value.
TimeSeriesDemo5 - Class in org.jfree.chart.demo: A time series chart with 4000 data points, to get an idea of how JFreeChart performs with a larger dataset.
TimeSeriesDemo5(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo5: Creates a new demo instance.
TimeSeriesDemo6 - Class in org.jfree.chart.demo: A time series chart with all zero data.
TimeSeriesDemo6(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo6: Creates a new instance.
TimeSeriesDemo7 - Class in org.jfree.chart.demo: A time series chart.
TimeSeriesDemo7(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo7: A demonstration application showing how to create a simple time series chart.
TimeSeriesDemo8 - Class in org.jfree.chart.demo: A time series chart.
TimeSeriesDemo8(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo8: A demonstration application showing how to create a simple time series chart.
TimeSeriesDemo9 - Class in org.jfree.chart.demo: An example of a time series chart.
TimeSeriesDemo9(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo9: A demonstration application showing how to create a simple time series chart.
TimeSeriesTableModel - Class in org.jfree.data: Wrapper around a time series to convert it to a table model for use in a JTable.
TimeSeriesTableModel() - Constructor for class org.jfree.data.TimeSeriesTableModel: Default constructor.
TimeSeriesTableModel(TimeSeries) - Constructor for class org.jfree.data.TimeSeriesTableModel: Constructs a table model for a time series.
TimeSeriesTableModel(TimeSeries, boolean) - Constructor for class org.jfree.data.TimeSeriesTableModel: Creates a table model based on a time series.
TimeSeriesURLGenerator - Class in org.jfree.chart.urls: A URL generator.
TimeSeriesURLGenerator() - Constructor for class org.jfree.chart.urls.TimeSeriesURLGenerator: Blank constructor
TimeSeriesURLGenerator(DateFormat, String, String, String) - Constructor for class org.jfree.chart.urls.TimeSeriesURLGenerator: Construct TimeSeriesURLGenerator overriding defaults
TimeTableXYDataset - Class in org.jfree.data.time: A dataset for regular time periods that implements the TableXYDataset interface.
TimeTableXYDataset() - Constructor for class org.jfree.data.time.TimeTableXYDataset: Creates a new TimeTableDataset.
TimeTableXYDataset(TimeZone) - Constructor for class org.jfree.data.time.TimeTableXYDataset: Creates a new TimeTableDataset with the given time zone.
TimeTableXYDataset(TimeZone, Locale) - Constructor for class org.jfree.data.time.TimeTableXYDataset: Creates a new TimeTableDataset with the given time zone and locale.
timeUnit - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow
timeUnit - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint
timeUnitAndTime - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint
timeValue - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint
timeValue - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.MyComparableNode
timeValueForComparision - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint
tinvers(double, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.StatisticTable
Title - Class in org.jfree.chart.title: The base class for all chart titles.
TITLE - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReference
titleChanged(TitleChangeEvent) - Method in interface org.jfree.chart.event.TitleChangeListener: Receives notification of a chart title change event.
titleChanged(TitleChangeEvent) - Method in class org.jfree.chart.JFreeChart: Receives notification that a chart title has changed, and passes this on to registered listeners.
TitleChangeEvent - Class in org.jfree.chart.event: A change event that encapsulates information about a change to a chart title.
TitleChangeEvent(Title) - Constructor for class org.jfree.chart.event.TitleChangeEvent: Default constructor.
TitleChangeListener - Interface in org.jfree.chart.event: The interface that must be supported by classes that wish to receive notification of changes to a chart title.
TitlePropertyEditPanel - Class in org.jfree.chart.ui: A panel for editing the properties of a chart title.
TitlePropertyEditPanel(Title) - Constructor for class org.jfree.chart.ui.TitlePropertyEditPanel: Standard constructor: builds a panel for displaying/editing the properties of the specified title.
toArray() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
toArray() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
toArray() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment
toArray() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface
toArray() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample
toArray() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface
toArray() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
toArray() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
toArray(T[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
toArray(T[]) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
toArray(T[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment
toArray(T[]) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface
toArray(T[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample
toArray(T[]) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface
toArray(T[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
toArray(T[]) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
toBeAdded() - Method in class org.graffiti.selection.SelectionEvent: Returns the added.
toDataValue(double[]) - Method in class org.vanted.animation.data.ColorTimePoint
toDataValue(double[]) - Method in class org.vanted.animation.data.DoubleTimePoint
toDataValue(double[]) - Method in class org.vanted.animation.data.InterpolatableTimePoint: Reverses InterpolatableTimePoint.getDoubleValues() method.
toDataValue(double[]) - Method in class org.vanted.animation.data.Point2DTimePoint
toDataValue(double[]) - Method in class org.vanted.animation.data.VectorTimePoint
toggleAutoRange() - Method in class org.jfree.chart.ui.ColorBarPropertyEditPanel: Toggle the auto range setting.
toGMLstring() - Method in enum org.AlignmentSetting
toGMLstring() - Method in enum org.LabelFrameSetting
toMillisecond(long) - Method in class org.jfree.chart.axis.SegmentedTimeline: Translates a value relative to the timeline into a millisecond.
toMillisecond(long) - Method in interface org.jfree.chart.axis.Timeline: Translates a value relative to this timeline into a domain value.
Tool - Interface in org.graffiti.plugin.tool: A Tool executes a specified action on a ConstrainedGraph.
ToolBarLayout - Class in org.graffiti.util: An extension of FlowLayout that correctly calculates the height of a toolbar panel.
ToolBarLayout() - Constructor for class org.graffiti.util.ToolBarLayout
ToolBarLayout(int) - Constructor for class org.graffiti.util.ToolBarLayout
ToolBarLayout(int, int, int) - Constructor for class org.graffiti.util.ToolBarLayout
ToolBarOptionPane - Class in org.graffiti.editor.options: A tool bar editor.
ToolBarOptionPane(Preferences) - Constructor for class org.graffiti.editor.options.ToolBarOptionPane: Constructor for ToolBarOptionPane.
Toolbox - Class in org.vanted.scaling: An utility class holding some handy methods for tweaking the scaling of some components, where necessary.
Toolbox() - Constructor for class org.vanted.scaling.Toolbox
ToolButton - Class in org.graffiti.plugin.gui: DOCUMENT ME!
ToolButton(Tool) - Constructor for class org.graffiti.plugin.gui.ToolButton: Constructor that sets the buttons tool to the given Tool.
ToolButton(Tool, String) - Constructor for class org.graffiti.plugin.gui.ToolButton: Creates a new ToolButton object.
ToolButton(Tool, String, String) - Constructor for class org.graffiti.plugin.gui.ToolButton: Creates a new ToolButton object.
ToolButton(Tool, String, ImageIcon) - Constructor for class org.graffiti.plugin.gui.ToolButton: Creates a new ToolButton object.
ToolManager - Interface in org.graffiti.managers: An interface for managing a list of tools.
tools - Variable in class org.graffiti.plugin.EditorPluginAdapter: The tools the plugin provides.
Tools - Class in qmwi.kseg.som
Tools() - Constructor for class qmwi.kseg.som.Tools
ToolTipHelper - Class in org.graffiti.plugin
ToolTipHelper() - Constructor for class org.graffiti.plugin.ToolTipHelper
TOOLTIPS - org.FeatureSet
ToolTipTagFragmentGenerator - Interface in org.jfree.chart.imagemap: Interface for generating the tooltip fragment of an HTML image map area tag.
TOP - org.graffiti.plugins.attributecomponents.simplelabel.Quadrant
TOP - org.graffiti.plugins.views.defaults.Line
TOP - Static variable in class info.clearthought.layout.SingleFiledLayout: Top justify components
TOP - Static variable in interface info.clearthought.layout.TableLayoutConstants: Indicates that the component is top justified in its cell
TOP - Static variable in class org.jfree.chart.renderer.LineAndShapeRenderer: Constant indicating that labels are to be shown above data points
TOP - Static variable in class org.jfree.chart.title.Title: Useful constant for the title position (also used for vertical alignment).
TOP_LEFT - org.graffiti.plugins.views.defaults.Corner
TOP_OR_LEFT - Static variable in class org.jfree.chart.axis.AxisLocation: Axis at the top or left.
TOP_OR_RIGHT - Static variable in class org.jfree.chart.axis.AxisLocation: Axis at the top or right.
TOP_RIGHT - org.graffiti.plugins.views.defaults.Corner
topN - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOperation
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.NodeSortCommand
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.exact_fisher_test.ContTable
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionEntry
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KoEntry
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzClassEntry
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.QuadNumber
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathPathway
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReaction
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.LineModeSetting
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.GraffitiCharts
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_editing.DBGETresult
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetTable
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.LegendType
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.FisherOperationMode
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition.ConditionInfo
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
toString() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingId
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader
toString() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
toString() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.TtestInfo
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter.QueryType
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.SimpleModel: Returns a string representation of the object.
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DataRowExcelExport
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ProjectEntity
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TimeAndPlantName
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.SpecialTableValue
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.TimeAndTimeUnit
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggPathwayEntry
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.OrganismEntry
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkItem
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkTreeNode
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyXML_XYDataset
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.LookAndFeelWrapper
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.PrettyObject
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings.MyPluginTreeNode
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate.RotateAlgorithm
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kgml.Vector2d
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.EntryType
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.Id
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.IdRef
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.kgmlColor
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.kgmlGraphicsType
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.kgmlNumber
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.MapNumber
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.MapOrg
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.ReactionType
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.RelationType
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.SubtypeName
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.SubtypeValue
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.Url
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Entry
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayErrorInformation
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayWarningInformation
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.IndexAndString
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.NodeCombination
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Reaction
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Subtype
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.copy_pattern_layout.CopyPatternLayoutAlgorithm
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache.PatternSpringembedder: DOCUMENT ME!
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BundleParallelEdges.Shapes
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder3d
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.AttributeCalculation
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.ModeOfAttributeOperation
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.HideOrShowChildNodes.HideOrShowOperation
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.AttributePathNameSearchType
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchType
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayLinkVisualizationComponent
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.SetLabelModeOfOperation
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SizeSettingZoom
toString() - Method in class de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoader
toString() - Method in class de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoaderInstance
toString() - Method in interface de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoaderInterface
toString() - Method in class info.clearthought.layout.TableLayout: Converts this TableLayout to a string.
toString() - Method in class info.clearthought.layout.TableLayoutConstraints: Gets a string representation of this TableLayoutConstraints.
toString() - Method in enum org.AlignmentSetting
toString() - Method in class org.graffiti.attributes.AbstractAttribute: Returns the ID of this attribute.
toString() - Method in class org.graffiti.editor.GraffitiInternalFrame
toString() - Method in enum org.graffiti.editor.HashType
toString() - Method in class org.graffiti.graph.AdjListEdge
toString() - Method in class org.graffiti.graph.AdjListGraph
toString() - Method in class org.graffiti.graph.AdjListNode
toString() - Method in class org.graffiti.help.HelpContext: Returns a human readable string of this help context.
toString() - Method in class org.graffiti.managers.DefaultIOManager: Returns a string representation of the io manager.
toString() - Method in class org.graffiti.managers.pluginmgr.PluginDependency: Returns a human readable string of this object.
toString() - Method in class org.graffiti.managers.pluginmgr.PluginDescription: Returns a human readable string representation of this object.
toString() - Method in enum org.graffiti.plugin.algorithm.Category
toString() - Method in class org.graffiti.plugin.io.resources.IOurl
toString() - Method in class org.graffiti.plugin.parameter.AbstractSingleParameter
toString() - Method in class org.graffiti.plugins.inspectors.defaults.BooledAttribute: Returns the ID of the contained attribute.
toString() - Method in enum org.graffiti.plugins.views.defaults.DockingAttributeEditor.DockingModes
toString() - Method in enum org.graffiti.plugins.views.defaults.ThicknessAttributeEditor.ArrowHeadModes
toString() - Method in class org.graffiti.selection.Selection: Gets a string describing the selection.
toString() - Method in class org.graffiti.session.Session
toString() - Method in class org.graffiti.util.Pair
toString() - Method in class org.jfree.chart.axis.AxisLocation: Returns a string representing the object.
toString() - Method in class org.jfree.chart.axis.AxisSpace: Returns a string representing the object (for debugging purposes).
toString() - Method in class org.jfree.chart.axis.CategoryAnchor: Returns a string representing the object.
toString() - Method in class org.jfree.chart.axis.CategoryLabelWidthType: Returns a string representing the object.
toString() - Method in class org.jfree.chart.axis.DateTickMarkPosition: Returns a string representing the object.
toString() - Method in class org.jfree.chart.axis.Tick: Returns a string representation of the tick.
toString() - Method in class org.jfree.chart.entity.CategoryItemEntity: Returns a string representing this object (useful for debugging purposes).
toString() - Method in class org.jfree.chart.entity.PieSectionEntity: Returns a string representing the entity.
toString() - Method in class org.jfree.chart.labels.ItemLabelAnchor: Returns a string representing the object.
toString() - Method in class org.jfree.chart.LegendRenderingOrder: Returns a string representing the object.
toString() - Method in class org.jfree.chart.plot.DatasetRenderingOrder: Returns a string representing the object.
toString() - Method in class org.jfree.chart.plot.DialShape: Returns a string representing the object.
toString() - Method in class org.jfree.chart.plot.PieLabelDistributor: Returns a string containing a description of the object for debugging purposes.
toString() - Method in class org.jfree.chart.plot.PieLabelRecord: Returns a string describing the object.
toString() - Method in class org.jfree.chart.plot.PlotOrientation: Returns a string representing the object.
toString() - Method in class org.jfree.chart.renderer.AreaRendererEndType: Returns a string representing the object.
toString() - Method in class org.jfree.chart.renderer.Outlier: Returns a textual representation of the outlier.
toString() - Method in class org.jfree.chart.renderer.RangeType: Returns a string representing the object.
toString() - Method in class org.jfree.data.DateRange: Returns a string representing the date range (useful for debugging).
toString() - Method in class org.jfree.data.KeyedValueComparatorType: Returns a string representing the object.
toString() - Method in class org.jfree.data.Range: Returns a string representation of this Range.
toString() - Method in class org.jfree.data.statistics.HistogramType: Returns a string representing the object.
toString() - Method in class org.jfree.data.time.Day: Returns a string representing the day.
toString() - Method in class org.jfree.data.time.Month: Returns a string representing the month (e.g.
toString() - Method in class org.jfree.data.time.Quarter: Returns a string representing the quarter (e.g.
toString() - Method in class org.jfree.data.time.RegularTimePeriod: Returns a string representation of the time period.
toString() - Method in class org.jfree.data.time.TimePeriodAnchor: Returns a string representing the object.
toString() - Method in class org.jfree.data.time.Week: Returns a string representing the week (e.g.
toString() - Method in class org.jfree.data.time.Year: Returns a string representing the year..
toString() - Method in enum org.LabelFrameSetting
toString() - Method in class org.ObjectRef
toString() - Method in enum org.Release
toString() - Method in class org.vanted.animation.data.Point2DTimePoint
toString() - Method in class org.vanted.animation.data.TimePoint
toString() - Method in class org.vanted.animation.interpolators.CosineInterpolator
toString() - Method in class org.vanted.animation.interpolators.CubicInterpolator
toString() - Method in class org.vanted.animation.interpolators.LinearInterpolator
toString() - Method in class org.vanted.animation.interpolators.SigmoidInterpolator
toString() - Method in class org.vanted.animation.interpolators.SineInterpolator
toString() - Method in class org.vanted.animation.interpolators.SmoothCubicInterpolator
toString() - Method in class org.vanted.LookAndFeelNameAndClass
toString() - Method in class org.vanted.plugins.layout.multilevelframework.LayoutAlgorithmWrapper
toString() - Method in enum org.vanted.plugins.layout.stressminimization.StressMinParamModel.InitialLayoutOption
toString() - Method in enum org.vanted.plugins.layout.stressminimization.StressMinParamModel.MethodOption
toString() - Method in class org.Vector2d
toString() - Method in class org.Vector2df
toString() - Method in class org.Vector3d
toString() - Method in class placement.Block
toString() - Method in class placement.Constraint
toString() - Method in class placement.MaxPairingHeap
toString() - Method in class placement.ScanListPriorityQueue
toString() - Method in class placement.SlowPriorityQueue
toString() - Method in class placement.Variable
toString() - Method in class qmwi.kseg.som.CSV_SOM_dataEntry
toString() - Method in class scenario.Scenario
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttribute
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartAttribute
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttribute
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundAttribute
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundPositionAttribute
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_color.LabelColorAttribute
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings.LabelFontAttribute
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style.LabelStyleAttribute
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttribute
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggGroupPartAttribute
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggIdAttribute
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionIdAttribute
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionTypeAttribute
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSrcTgtAttribute
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSubTypeAttribute
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationTypeAttribute
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggTypeAttribute
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment.LabelAlignmentAttribute
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttribute
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttribute
toString(int) - Method in class org.graffiti.attributes.AbstractAttribute
toString(int) - Method in class org.graffiti.attributes.AbstractCollectionAttribute
toString(int) - Method in interface org.graffiti.attributes.Attribute: Returns a string representation prepended by n spaces of this attribute.
toString(int) - Method in class org.graffiti.attributes.StringAttribute
toString(StringBuilder, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader
toString(StringBuilder, int) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface
toStringWithDetails(boolean, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Reaction
toStringWithErrorThrowing() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment
toStringWithErrorThrowing() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface
toStringWithKeggIDs() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation
toStringWithKeggNames() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation
toStringWithShortDesc(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation
toTimelineValue(long) - Method in class org.jfree.chart.axis.SegmentedTimeline: Translates a value relative to the domain value (all Dates) into a value relative to the segmented timeline.
toTimelineValue(long) - Method in interface org.jfree.chart.axis.Timeline: Translates a millisecond (as defined by java.util.Date) into an index along this timeline.
toTimelineValue(Date) - Method in class org.jfree.chart.axis.SegmentedTimeline: Translates a date into a value relative to the segmented timeline.
toTimelineValue(Date) - Method in interface org.jfree.chart.axis.Timeline: Translates a date into a value on this timeline.
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttribute
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartAttribute
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttribute
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundAttribute
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundPositionAttribute
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_color.LabelColorAttribute
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings.LabelFontAttribute
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style.LabelStyleAttribute
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttribute
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggGroupPartAttribute
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggIdAttribute
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionIdAttribute
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionTypeAttribute
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSrcTgtAttribute
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSubTypeAttribute
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationTypeAttribute
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggTypeAttribute
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment.LabelAlignmentAttribute
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttribute
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttribute
toXMLString() - Method in class org.graffiti.attributes.AbstractAttribute
toXMLString() - Method in class org.graffiti.attributes.AbstractCollectionAttribute
toXMLString() - Method in class org.graffiti.attributes.BooleanAttribute
toXMLString() - Method in class org.graffiti.attributes.ByteAttribute
toXMLString() - Method in class org.graffiti.attributes.DoubleAttribute
toXMLString() - Method in class org.graffiti.attributes.FloatAttribute
toXMLString() - Method in class org.graffiti.attributes.IntegerAttribute
toXMLString() - Method in class org.graffiti.attributes.LinkedHashMapAttribute
toXMLString() - Method in class org.graffiti.attributes.LongAttribute
toXMLString() - Method in class org.graffiti.attributes.ShortAttribute
toXMLString() - Method in class org.graffiti.attributes.StringAttribute
toXMLString() - Method in interface org.graffiti.plugin.Displayable: Returns a well-formed XML string representing the Displayable.
toXMLString() - Method in class org.graffiti.plugin.parameter.AbstractLimitableParameter
toXMLString() - Method in class org.graffiti.plugin.parameter.AbstractSingleParameter
toXMLString() - Method in class org.graffiti.plugin.parameter.BooleanParameter
toXMLString() - Method in class org.graffiti.plugin.parameter.ColorParameter
toXMLString() - Method in class org.graffiti.plugin.parameter.StringParameter
trainOrUseSOM(boolean, int, String[], int, BackgroundTaskStatusProviderSupportingExternalCall, int) - Method in class qmwi.kseg.som.DataSet: Trains the SOM or uses the SOM in order to divide the input into groups
TransactionAdapter - Class in org.graffiti.event: Adapter for the TransactionListener interface, providing default empty implementation.
TransactionAdapter() - Constructor for class org.graffiti.event.TransactionAdapter
TransactionEvent - Class in org.graffiti.event: Contains a transaction event.
TransactionEvent(Object) - Constructor for class org.graffiti.event.TransactionEvent: Constructs a transaction event object with the specified source component.
TransactionEvent(Object, TransactionHashMap) - Constructor for class org.graffiti.event.TransactionEvent: Constructs a transaction event object with the specified source component.
transactionFinished(Object) - Method in class org.graffiti.event.ListenerManager: Called when a transaction has finished.
transactionFinished(Object, boolean) - Method in class org.graffiti.event.ListenerManager
transactionFinished(Object, boolean, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.event.ListenerManager
transactionFinished(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkTab
transactionFinished(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics
transactionFinished(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPatternLayout
transactionFinished(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPluginControl
transactionFinished(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabVisualisationControl: Deprecated.
transactionFinished(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.WorkflowHelper: Deprecated.
transactionFinished(TransactionEvent) - Method in class org.graffiti.event.AbstractAttributeListener: Called after a transaction has been finished.
transactionFinished(TransactionEvent) - Method in class org.graffiti.event.AbstractEdgeListener: Called after a transaction has been finished.
transactionFinished(TransactionEvent) - Method in class org.graffiti.event.AbstractGraphListener: Called after a transaction has been finished.
transactionFinished(TransactionEvent) - Method in class org.graffiti.event.AbstractNodeListener: Called after a transaction has been finished.
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKGraffitiView
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation.NavigationComponentView
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.editor.StatusBar
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.event.AbstractAttributeListener
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.event.AttributeAdapter
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.event.EdgeAdapter
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.event.GraphAdapter
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.event.NodeAdapter
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.event.TransactionAdapter
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in interface org.graffiti.event.TransactionListener: Called when a transaction has stopped.
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugin.editcomponent.GraphComponentEditComponent: Called if a transaction got finished.
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called if a transaction got finished.
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugin.inspector.SubtabHostTab
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugin.view.AbstractView: Called when a transaction has stopped.
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugins.inspectors.defaults.AbstractTab
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugins.views.defaults.GraffitiView: Called when a transaction has stopped.
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugins.views.matrix.MatrixModel
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugins.views.matrix.MatrixView
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.session.GraphConstraintChecker: Called when a transaction has stopped.
TransactionHashMap - Class in org.graffiti.event
TransactionHashMap() - Constructor for class org.graffiti.event.TransactionHashMap
TransactionListener - Interface in org.graffiti.event: Interface, that contains methods which are called when transactions are started or finished.
transactionStarted(Object) - Method in class org.graffiti.event.ListenerManager: Called when a transaction has started.
transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkTab
transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics
transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPatternLayout
transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPluginControl
transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabVisualisationControl: Deprecated.
transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.WorkflowHelper: Deprecated.
transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation.NavigationComponentView
transactionStarted(TransactionEvent) - Method in class org.graffiti.editor.StatusBar
transactionStarted(TransactionEvent) - Method in class org.graffiti.event.AbstractAttributeListener: Called after a transaction has been started.
transactionStarted(TransactionEvent) - Method in class org.graffiti.event.AbstractEdgeListener: Called after a transaction has been started.
transactionStarted(TransactionEvent) - Method in class org.graffiti.event.AbstractGraphListener: Called before a transaction has been started.
transactionStarted(TransactionEvent) - Method in class org.graffiti.event.AbstractNodeListener: Called after a transaction has been started.
transactionStarted(TransactionEvent) - Method in class org.graffiti.event.AttributeAdapter
transactionStarted(TransactionEvent) - Method in class org.graffiti.event.EdgeAdapter
transactionStarted(TransactionEvent) - Method in class org.graffiti.event.GraphAdapter
transactionStarted(TransactionEvent) - Method in class org.graffiti.event.NodeAdapter
transactionStarted(TransactionEvent) - Method in class org.graffiti.event.TransactionAdapter
transactionStarted(TransactionEvent) - Method in interface org.graffiti.event.TransactionListener: Called when a transaction has started.
transactionStarted(TransactionEvent) - Method in class org.graffiti.plugin.editcomponent.GraphComponentEditComponent: Called if a transaction got started.
transactionStarted(TransactionEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
transactionStarted(TransactionEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called if a transaction got started.
transactionStarted(TransactionEvent) - Method in class org.graffiti.plugin.inspector.SubtabHostTab
transactionStarted(TransactionEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called when a transaction has started.
transactionStarted(TransactionEvent) - Method in class org.graffiti.plugins.inspectors.defaults.AbstractTab
transactionStarted(TransactionEvent) - Method in class org.graffiti.plugins.views.defaults.GraffitiView
transactionStarted(TransactionEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixModel
transactionStarted(TransactionEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
transactionStarted(TransactionEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called when a transaction has started.
TransferableObject - Class in net.iharder.dnd: At last an easy way to encapsulate your custom objects for dragging and dropping in your Java programs! When you need to create a Transferable object, use this class to wrap your object.
TransferableObject(Class<?>, TransferableObject.Fetcher) - Constructor for class net.iharder.dnd.TransferableObject: Creates a new TransferableObject that will return the object that is returned by fetcher.
TransferableObject(Object) - Constructor for class net.iharder.dnd.TransferableObject: Creates a new TransferableObject that wraps data.
TransferableObject(TransferableObject.Fetcher) - Constructor for class net.iharder.dnd.TransferableObject: Creates a new TransferableObject that will return the object that is returned by fetcher.
TransferableObject.Fetcher - Interface in net.iharder.dnd: Instead of passing your data directly to the TransferableObject constructor, you may want to know exactly when your data was received in case you need to remove it from its source (or do anyting else to it).
transformsDataList() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.AttributeCalculation
TransitionShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
TransitionShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TransitionShape
translateDateToJava2D(Date, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.DateAxis: Deprecated.
Use dataToJava2D() instead.
translateJava2DToScreen(Point2D) - Method in class org.jfree.chart.ChartPanel: Translates a Java2D point on the chart to a screen location.
translateJava2DtoValue(float, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.ValueAxis: Deprecated.
Use translateJava2DToValue(double, ...).
translateJava2DToValue(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.DateAxis: Deprecated.
Use java2DToValue instead.
translateJava2DToValue(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.LogarithmicAxis: Deprecated.
Use java2DToValue().
translateJava2DToValue(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.NumberAxis: Deprecated.
Use java2DToValue() instead.
translateJava2DToValue(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.ValueAxis: Deprecated.
Use java2DToValue instead.
translateScreenToJava2D(Point) - Method in class org.jfree.chart.ChartPanel: Translates a screen location to a Java2D point.
translateValueThetaRadiusToJava2D(double, double, Rectangle2D) - Method in class org.jfree.chart.plot.PolarPlot: Translates a (theta, radius) pair into Java2D coordinates.
translateValueToJava2D(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.DateAxis: Deprecated.
Use valueToJava2D instead.
translateValueToJava2D(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.LogarithmicAxis: Deprecated.
Use valueToJava2D().
translateValueToJava2D(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.NumberAxis: Deprecated.
Use valueToJava2D() instead.
translateValueToJava2D(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.ValueAxis: Deprecated.
Use valueToJava2D instead.
TRANSPATH_ACCESS - org.FeatureSet
TranspathEntity - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
TranspathEntity() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathEntity
TranspathEntityType - Interface in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
TranspathGene - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
TranspathGene() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathGene
TranspathMolecule - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
TranspathMolecule() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathMolecule
TranspathPathway - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
TranspathPathway() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathPathway
TranspathPathwayLoader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.commands
TranspathPathwayLoader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.commands.TranspathPathwayLoader
TranspathReaction - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
TranspathReaction() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReaction
TranspathReference - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
TranspathReference() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReference
TranspathService - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
TranspathService() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathService
TranspathXMLparser - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
TranspathXMLparser(Map<String, TranspathEntityType>, Class<?>, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathXMLparser
treatment - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow
TREATMENT - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition.ConditionInfo
TreeAttributSearcher - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility: enumerates the attributes of the given node / attributable in a path --> attribute map
TreeAttributSearcher() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.TreeAttributSearcher
TreeContainer - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree: Contains additional informations about each tree in the forest.
TreeContainer(HashMap<Integer, Double>, HashMap<Node, Integer>, HashMap<Integer, Double>, HashMap<Node, Integer>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.TreeContainer
TreeContainer(HashMap<Node, Integer>, HashMap<Integer, Double>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.TreeContainer
TreeContainer(HashMap<Node, Integer>, HashMap<Integer, Double>, HashSet<Edge>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.TreeContainer
TreeContainer(LinkedList<?>, HashMap<Integer, Double>, HashMap<Node, Integer>, HashMap<Integer, Double>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.TreeContainer
TreeTableCellEditor() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.JTreeTable.TreeTableCellEditor
TreeTableCellRenderer(TreeModel) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.JTreeTable.TreeTableCellRenderer
TreeTableModel - Interface in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model: TreeTableModel is the model used by a JTreeTable.
TreeTableModelAdapter - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model: This is a wrapper class takes a TreeTableModel and implements the table model interface.
TreeTableModelAdapter(TreeTableModel, JTree) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.TreeTableModelAdapter
TRIGGER_FUNCTION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
triggerArrow - Static variable in class org.graffiti.plugins.editcomponents.defaults.EdgeArrowShapeEditComponent
TriggerArrowShape - Class in org.graffiti.plugins.views.defaults: DOCUMENT ME!
TriggerArrowShape() - Constructor for class org.graffiti.plugins.views.defaults.TriggerArrowShape: Constructs a new arrow.
TriggerArrowShape(float) - Constructor for class org.graffiti.plugins.views.defaults.TriggerArrowShape
trimKnownPrefixes(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeEntry
trimToSize() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment
trimToSize() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface
TristateCheckBox - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui: Maintenance tip - There were some tricks to getting this code working: 1.
TristateCheckBox() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.TristateCheckBox
TristateCheckBox(String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.TristateCheckBox
TristateCheckBox(String, TristateCheckBox.State) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.TristateCheckBox
TristateCheckBox(String, Icon, TristateCheckBox.State) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.TristateCheckBox
TristateCheckBox.State - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui: This is a type-safe enumerated type
TRUNCATE - Static variable in class org.jfree.chart.renderer.AreaRendererEndType: The area is truncated at the first or last value.
TruncProteinShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
TruncProteinShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TruncProteinShape
tryGetDBEISloginUrlParameters() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.PasswordDialog
tryMakingNewInstance(T) - Static method in enum org.vanted.plugins.layout.multilevelframework.MlfHelper: Create new instances of the layouters to avoid interfering with the ones that VANTED holds.
TtestInfo - Enum in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper
ttestIsH1(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper
ttestIsReference - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint
tTestIsReference(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper
ttestIsSignificantDifferent - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint
tTestSetSampleAsReference(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper
tTestSetSampleSignificane(Node, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper
Tvertp(double, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.StatisticTable
Tvertz(double, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.StatisticTable
TWO - org.vanted.animation.NumberOfLoops
TYPE - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathMolecule
TYPE - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathPathway
TYPE - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReaction
TYPE_ATTRIBUTE_LITERAL - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLConstants
TypedAttributeService - Class in org.graffiti.plugins.ios.importers
TypedAttributeService() - Constructor for class org.graffiti.plugins.ios.importers.TypedAttributeService
tzweiseitig(int, double) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.StatisticTable

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