Uses of Interface
org.graffiti.plugin.io.Serializer

Packages that use Serializer

Package	Description
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.biopax
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.metatool
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.pajek
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sif
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.xwg_wilma
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kegg_xml
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kgml
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.pajek
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.petri_ina_pnt
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml
org.graffiti.plugin.io	Contains interfaces and classes for reading and writing a graph object in diverse file formats.
org.graffiti.plugins.ios.exporters.gml
org.graffiti.plugins.ios.exporters.gmlxml
org.graffiti.plugins.ios.exporters.graphml	This package provides a plugin for writing Graphs to files using the graphML format.
org.graffiti.plugins.ios.exporters.graphviz
org.graffiti.plugins.ios.importers.gml
org.graffiti.plugins.ios.importers.graphml	This package provides the interface to a plugin for reading Graphs from files using the graphML format.

Uses of Serializer in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.biopax

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.biopax that implement Serializer

Modifier and Type	Class	Description
class	BioPAX_OWL_Writer	Takes a graph with a biochemical pathway, filters all attributes that could possibly belong to a BioPax-File and creates and OWL-File out of it

Uses of Serializer in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.metatool

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.metatool that implement Serializer

Modifier and Type	Class	Description
class	MetaToolReader
class	MetatoolWriter

Uses of Serializer in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.pajek

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.pajek that implement Serializer

Modifier and Type	Class	Description
class	PajekWriter
class	PovrayWriter

Uses of Serializer in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml that implement Serializer

Modifier and Type	Class	Description
class	SBML_XML_Writer

Uses of Serializer in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sif

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sif that implement Serializer

Modifier and Type	Class	Description
class	SIFWriter

Uses of Serializer in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.xwg_wilma

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.xwg_wilma that implement Serializer

Modifier and Type	Class	Description
class	XWGSerializer

Uses of Serializer in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax that implement Serializer

Modifier and Type	Class	Description
class	BioPAX_OWL_Reader	Imports Level 2 and 3 OWL Files to Vanted Graph.

Uses of Serializer in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kegg_xml

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kegg_xml that implement Serializer

Modifier and Type	Class	Description
class	KEGG_XML_Reader
class	KEGG2_XML_Reader
class	KEGG2_XML_Writer

Uses of Serializer in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kgml

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kgml that implement Serializer

Modifier and Type	Class	Description
class	KEGG_XML_Reader_g

Uses of Serializer in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.pajek

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.pajek that implement Serializer

Modifier and Type	Class	Description
class	PajekReader	edges in list form (not supported): vertices <# of vertices> 1 "x" 2 "y" 3 "z" arcslist 1 2 3 2 3 non-list form for edges: vertices <# of vertices> 1 "a" x y z 2 "b" x y 3 "c" edges 1 2 0.3 1 3 0.7 2 3 1.0 arcs 1 2 0.3 1 3 0.7 2 3 1.0

Uses of Serializer in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.petri_ina_pnt

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.petri_ina_pnt that implement Serializer

Modifier and Type	Class	Description
class	PNTReader
class	PNTSerializer

Uses of Serializer in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml that implement Serializer

Modifier and Type	Class	Description
class	SBML_XML_Reader

Uses of Serializer in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list that implement Serializer

Modifier and Type	Class	Description
class	SIFreader	edges in list form S I T (Source Interaction Type Target) ===== n1 i1 n2 n2 i1 n3 n3 i2 n1
class	TextListReader	edges in list form S T W (header) a b 0.3 c b 0.7 % comment a c 1.0 or simple text format (see http://www.graphdrawing.de/contest2009/gdcategories2009.html): # Nodes Id1,40,40,20,20 Id2,40,40,100,100 Id3,40,40 # Edges Id1,Id2,40,20,100,20,100,80 Id3,Id2

Uses of Serializer in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml

Classes in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml that implement Serializer

Modifier and Type	Class	Description
class	XGMMLReader	This class provides a reader for praphs stored in XGMML format.

Uses of Serializer in org.graffiti.plugin.io

Subinterfaces of Serializer in org.graffiti.plugin.io

Modifier and Type	Interface	Description
interface	GraphPostProcessor	Interfaces a "graph post-processor", which is called once a graph is newly loaded from file and once a graph is newly created.
interface	InputSerializer	Interfaces a serializer, which is able to reconstruct a graph from a given input.
interface	OutputSerializer	Interfaces a serializer, which is able to write a given graph in a special format to a given output stream.

Classes in org.graffiti.plugin.io that implement Serializer

Modifier and Type	Class	Description
class	AbstractInputSerializer	Provides additional methods to access a graph file from different kinds of input.
class	AbstractIOSerializer	Provides additional methods to read and write from/to different kinds of targets.
class	AbstractOutputSerializer	Provides additional methods to write a graph object.

Uses of Serializer in org.graffiti.plugins.ios.exporters.gml

Classes in org.graffiti.plugins.ios.exporters.gml that implement Serializer

Modifier and Type	Class	Description
class	GMLgzWriter
class	GMLWriter	Provides a GML writer.

Uses of Serializer in org.graffiti.plugins.ios.exporters.gmlxml

Classes in org.graffiti.plugins.ios.exporters.gmlxml that implement Serializer

Modifier and Type	Class	Description
class	GMLXMLWriter	Provides a GML writer.

Uses of Serializer in org.graffiti.plugins.ios.exporters.graphml

Classes in org.graffiti.plugins.ios.exporters.graphml that implement Serializer

Modifier and Type	Class	Description
class	GraphMLgzWriter
class	GraphMLWriter	Class GraphMLWriter is the main class for writing a graph to a graphML file.

Uses of Serializer in org.graffiti.plugins.ios.exporters.graphviz

Classes in org.graffiti.plugins.ios.exporters.graphviz that implement Serializer

Modifier and Type	Class	Description
class	DOTreader
class	DOTSerializer	A very very simple writer for a graph in the dot format for Graphviz.

Uses of Serializer in org.graffiti.plugins.ios.importers.gml

Classes in org.graffiti.plugins.ios.importers.gml that implement Serializer

Modifier and Type	Class	Description
class	GMLReader	This class provides a reader for graphs in gml format.

Uses of Serializer in org.graffiti.plugins.ios.importers.graphml

Classes in org.graffiti.plugins.ios.importers.graphml that implement Serializer

Modifier and Type	Class	Description
class	GraphMLReader	This class implements the interface to invoke the reading of graphML files.