Uses of Interface
org.graffiti.graph.Edge

Packages that use Edge

Package	Description
de.ipk_gatersleben.ag_nw.graffiti
de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder	Provides the NaivePatternFinderPlugin, a plugin for finding given patterns within a given graph.
de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands
de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.metatool
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml
de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.graph_to_origin_mover
de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree
de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup
org
org.graffiti.event	Contains event classes and listener interfaces that are used to react to events fired by the graph model.
org.graffiti.graph	Contains graph interfaces and classes.
org.graffiti.plugin.algorithm
org.graffiti.plugin.parameter
org.graffiti.selection	Contains classes for the selection model.
org.graffiti.undo
org.graffiti.util	Contains utility classes for frequently needed functionality.
org.vanted.animation.animations
org.vanted.plugins.layout.adaptagrams.edgerouting
org.vanted.plugins.layout.multilevelframework	A layout algorithm to Vanted that implements the multi-level graph layout framework.

Uses of Edge in de.ipk_gatersleben.ag_nw.graffiti

Methods in de.ipk_gatersleben.ag_nw.graffiti that return Edge

Modifier and Type	Method	Description
static Edge	GraphHelperBio.addEdgeCopyIfNotExistant(Edge refEdge, Node a, Node b)
static Edge	GraphHelperBio.addEdgeIfNotExistant(Graph graph, Node nodeA, Node nodeB, boolean directed, CollectionAttribute graphicsAttributeForEdge)

Methods in de.ipk_gatersleben.ag_nw.graffiti that return types with arguments of type Edge

Modifier and Type	Method	Description
static ArrayList<Edge>	GraphHelperBio.getMapLinkEdges(Graph g)
static Collection<Edge>	GraphHelper.getSelectedOrAllEdges()
static Collection<Edge>	GraphHelper.getSelectedOrAllEdges(Selection selection, Graph graph)
static Collection<Edge>	GraphHelper.getSelectedOrAllEdges(EditorSession workSession)

Methods in de.ipk_gatersleben.ag_nw.graffiti with parameters of type Edge

Modifier and Type	Method	Description
static void	GraphHelper.addBends(Edge edge, Collection<Vector2d> bendPoints)
static Edge	GraphHelperBio.addEdgeCopyIfNotExistant(Edge refEdge, Node a, Node b)
static boolean	GraphHelperBio.isMapLink(Edge e)
static void	GraphHelper.selectGraphElement(Edge e)

Method parameters in de.ipk_gatersleben.ag_nw.graffiti with type arguments of type Edge

Modifier and Type	Method	Description
static void	GraphHelper.applyUndoableEdgeReversal(Graph graph, Collection<Edge> edges, String description)
static boolean	GraphHelper.hasBends(Collection<Edge> edges)	Does the given collection contain edges with bends?
static void	GraphHelper.introduceNewBends(Graph graph, HashSet<Edge> edges, int percent, String shape, int bends, boolean massCenterFromSelection, String description, boolean enableUndo)	Add new bends to a graph
static void	GraphHelper.introduceNewBends(Graph graph, HashSet<Edge> workEdges, int minPercent, String edgeShape, int i, String description, boolean enableUndo)
static void	GraphHelper.removeBends(Graph graph, Collection<Edge> edges, boolean enableUndo)

Uses of Edge in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder with parameters of type Edge

Modifier and Type	Method	Description
static void	PatternAttributeUtils.addAGNWContainer(Edge e)	Adds the top level container attribute "AGNW" to the given edge.
static void	PatternAttributeUtils.addPattern(Edge e, int position)	Adds the pattern container for the given pattern position at the given edge.
static void	PatternAttributeUtils.addPatternContainer(Edge e)	Adds the pattern container attribute "AGNW.PATTERN" to the given edge.
static void	PatternAttributeUtils.addPatternInformation(Edge e, int position, String patternName, Integer patternIndex, Integer edgeIndex)	Adds a set of pattern information to the given edge.
static void	PatternAttributeUtils.checkAndAddAGNWContainer(Edge e)	Adds the top level container attribute "AGNW" to the given edge, if it is not already there.
static void	PatternAttributeUtils.checkAndAddPattern(Edge e, int position)	Adds the pattern container for the pattern position to the given edge, if it is not already there.
static void	PatternAttributeUtils.checkAndAddPatternContainer(Edge e)	Adds the pattern container attribute "AGNW.PATTERN" to the given edge, if it is not already there.
static boolean	PatternAttributeUtils.checkExistenceAGNWContainer(Edge e)	Checks, if the top level container attribute "AGNW" exists at the given edge.
static boolean	PatternAttributeUtils.checkExistenceOfAnyPattern(Edge e)	Checks if a pattern exists at the given edge.
static boolean	PatternAttributeUtils.checkExistencePattern(Edge e, int position)	Checks, if the pattern container for the pattern position exists at the given edge.
static boolean	PatternAttributeUtils.checkExistencePatternContainer(Edge e)	Checks, if the pattern container attribute "AGNW.PATTERN" exists at the given edge.
static int	PatternAttributeUtils.findPatternPosition(Edge e, String patternName, Integer patternIndex)	Returns the position of the given pattern name and pattern index for the given edge.
static Integer	PatternAttributeUtils.getEdgeIndex(Edge e, int position)	Returns the edge index for the given edge and position.
static Integer	PatternAttributeUtils.getInternalEdgeIndex(Edge e, int position)	Returns the internal edge index for the given edge and position.
static int	PatternAttributeUtils.getMaximumPatternPosition(Edge e)	Returns the maximal position value of the pattern container.
static Integer	PatternAttributeUtils.getPatternIndex(Edge e, int position)	Returns the pattern index for the given edge and position.
static String	PatternAttributeUtils.getPatternName(Edge e, int position)	Returns the pattern name for the given edge and position.

Uses of Edge in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands that return types with arguments of type Edge

Modifier and Type	Method	Description
static Collection<Edge>	SelectEdgesAlgorithm.getInnerClusterEdges(Collection<Edge> edges)
static Collection<Edge>	SelectEdgesAlgorithm.getInterClusterEdges(Collection<Edge> edges)

Method parameters in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands with type arguments of type Edge

Modifier and Type	Method	Description
static Collection<Edge>	SelectEdgesAlgorithm.getInnerClusterEdges(Collection<Edge> edges)
static Collection<Edge>	SelectEdgesAlgorithm.getInterClusterEdges(Collection<Edge> edges)

Uses of Edge in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper that return types with arguments of type Edge

Modifier and Type	Method	Description
Collection<Edge>	NodeHelper.getAllInEdges()
Collection<Edge>	NodeHelper.getAllOutEdges()
Collection<Edge>	NodeHelper.getDirectedInEdges()
Iterator<Edge>	NodeHelper.getDirectedInEdgesIterator()
Collection<Edge>	NodeHelper.getDirectedOutEdges()
Iterator<Edge>	NodeHelper.getDirectedOutEdgesIterator()
Collection<Edge>	NodeHelper.getEdges()
Iterator<Edge>	NodeHelper.getEdgesIterator()
Collection<Edge>	NodeHelper.getUndirectedEdges()
Iterator<Edge>	NodeHelper.getUndirectedEdgesIterator()

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper with parameters of type Edge

Modifier and Type	Method	Description
static boolean	EdgeHelper.hasMappingData(Edge e)
static void	EdgeHelper.moveBends(Edge edge, double offX, double offY)
static void	EdgeHelper.moveBends(Edge e, double moveX, double moveY, HashMap<CoordinateAttribute,Vector2d> bends2newPositions)

Uses of Edge in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility with parameters of type Edge

Modifier and Type	Method	Description
void	StoichiometryWriter.readParticipantStoichiometry(org.biopax.paxtools.model.level3.PhysicalEntity phys, org.biopax.paxtools.model.level3.Conversion interaction, Edge edge, org.biopax.paxtools.model.Model model)
void	StoichiometryWriter.writeParticipantStoichiometry(Node physicalEntityNode, Node reactionNode, Edge e, Set<org.biopax.paxtools.model.level3.Stoichiometry> Stoichiometry)

Uses of Edge in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.metatool

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.metatool with parameters of type Edge

Modifier and Type	Method	Description
static String	MetatoolWriter.getEdgeLabel(Edge ed)

Uses of Edge in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml with parameters of type Edge

Modifier and Type	Method	Description
void	SBML_SBase_Writer.addSBaseAttributes(org.sbml.jsbml.AbstractSBase sbase, Edge e, String niceID)
Object	SBML_SBase_Writer.getAttribute(Edge e, String headline, String attributeName)

Uses of Edge in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility with parameters of type Edge

Modifier and Type	Method	Description
void	StoichiometryWriter.writeParticipantStoichiometry(Node node, Node center, Edge e, Set<org.biopax.paxtools.model.level2.physicalEntityParticipant> set)

Uses of Edge in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml with parameters of type Edge

Modifier and Type	Method	Description
void	SBML_SBase_Reader.addNotes(org.sbml.jsbml.xml.XMLNode notesObject, String notesString, Edge e, String path, String notesName)

Uses of Edge in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml with parameters of type Edge

Modifier and Type	Method	Description
static ArrayList<IndexAndString>	KeggGmlHelper.getKeggReactionProducts(Edge e)
static ArrayList<IndexAndString>	KeggGmlHelper.getKeggReactionSubstrates(Edge e)
static ArrayList<IndexAndString>	KeggGmlHelper.getRelationSourceAndTargets(Edge e)
static String	KeggGmlHelper.getRelationSourceTarget(Edge e, int index)
static String	KeggGmlHelper.getRelationSubtypeName(Edge e, int index)
static ArrayList<IndexAndString>	KeggGmlHelper.getRelationSubTypeNames(Edge e)
static ArrayList<IndexAndString>	KeggGmlHelper.getRelationTypes(Edge e)
static void	Reaction.processEdgeReactionInformation(Edge e, ArrayList<ReactionAndInfo> reactionsRequestingThisNodeCombination, ArrayList<ReactionAndInfo> reactionsRequestingThisInverseNodeCombination)
static void	Relation.processEdgeRelationInformation(Edge e, ArrayList<Relation> relationsRequestingThisNodeCombination)
static void	KeggGmlHelper.setEdgeLabel(Edge e, String label)
static void	KeggGmlHelper.setKeggGraphicsLineStyleIndirect(Edge e)
static void	KeggGmlHelper.setKeggGraphicsLineStyleInhibitionArrow(Edge e)
static void	KeggGmlHelper.setKeggGraphicsLineStyleMap(Edge e)
static void	KeggGmlHelper.setKeggReactionProduct(Edge e, int index, String id)
static void	KeggGmlHelper.setKeggReactionSubstrate(Edge e, int index, String id)
static void	KeggGmlHelper.setRelationSourceTargetInformation(Edge e, int index, String srcKeggId, String tgtKeggId)
static void	KeggGmlHelper.setRelationSrcTgtInformation(Edge e, int i, IdRef e1, IdRef e2)	Add information about source or target entity which requests a relation and thus the creation of an edge
static void	KeggGmlHelper.setRelationSubtypeName(Edge e, int index, String subtype)
static void	KeggGmlHelper.setRelationTypeInformation(Edge e, int index, RelationType rt)

Uses of Edge in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml that return Edge

Modifier and Type	Method	Description
static Edge	SBMLHelper.addModifier(Node node, String speciesID)
static Edge	SBMLHelper.addModifier(Node node, org.sbml.jsbml.ModifierSpeciesReference ref)
static Edge	SBMLHelper.addProduct(Node node, String speciesID)
static Edge	SBMLHelper.addProduct(Node node, org.sbml.jsbml.SpeciesReference ref)
static Edge	SBMLHelper.addReactant(Node node, String speciesID)
static Edge	SBMLHelper.addReactant(Node node, org.sbml.jsbml.SpeciesReference ref)
static Edge	SBMLHelper.initProductEdge(Edge e)
static Edge	SBMLHelper.initReactantEdge(Edge e)

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml that return types with arguments of type Edge

Modifier and Type	Method	Description
static List<Edge>	SBMLHelper.getModifier(Node node)	Returns the modifier edges
Map<ReactionIDSpeciesIDWrapper,List<Edge>>	SBMLReactionHelper.getModifierClones()
Map<ReactionIDSpeciesIDWrapper,List<Edge>>	SBMLReactionHelper.getProductClones()
static List<Edge>	SBMLHelper.getProducts(Node node)	The edges with the simple species references will be returned
Map<ReactionIDSpeciesIDWrapper,List<Edge>>	SBMLReactionHelper.getReactantClones()
static List<Edge>	SBMLHelper.getReactants(Node node)	The edges with the simple species references will be returned

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml with parameters of type Edge

Modifier and Type	Method	Description
void	SBMLReactionHelper.addModifierCloneToList(String reactionId, String speciesId, Edge reactantEdge)
void	SBMLReactionHelper.addProductCloneToList(String reactionId, String speciesId, Edge reactantEdge)
void	SBMLReactionHelper.addReactantCloneToList(String reactionId, String speciesId, Edge reactantEdge)
void	SBMLReactionHelper.deleteAnnotationModifier(Edge edge)
void	SBMLReactionHelper.deleteAnnotationProduct(Edge edge)
void	SBMLReactionHelper.deleteAnnotationReactant(Edge edge)
static void	SBMLHelper.deleteConstant(Edge edge)
void	SBMLReactionHelper.deleteMetaIDModifier(Edge edge)
void	SBMLReactionHelper.deleteMetaIDProduct(Edge edge)
void	SBMLReactionHelper.deleteMetaIDReactant(Edge edge)
static void	SBMLHelper.deleteModifier(Edge edge)
void	SBMLReactionHelper.deleteNonRDFAnnotationModifier(Edge edge)
void	SBMLReactionHelper.deleteNonRDFAnnotationProduct(Edge edge)
void	SBMLReactionHelper.deleteNonRDFAnnotationReactant(Edge edge)
void	SBMLReactionHelper.deleteNotesModifier(Edge edge)
void	SBMLReactionHelper.deleteNotesProduct(Edge edge)
void	SBMLReactionHelper.deleteNotesReactant(Edge edge)
static void	SBMLHelper.deleteProduct(Edge edge)
static void	SBMLHelper.deleteReactant(Edge edge)
static void	SBMLHelper.deleteReactionSpecies(Edge edge)
static void	SBMLHelper.deleteReactionSpeciesID(Edge edge)
static void	SBMLHelper.deleteReactionSpeciesName(Edge edge)
void	SBMLReactionHelper.deleteSBOTermModifier(Edge edge)
void	SBMLReactionHelper.deleteSBOTermProduct(Edge edge)
void	SBMLReactionHelper.deleteSBOTermReactant(Edge edge)
static void	SBMLHelper.deleteStoichiometry(Edge edge)
org.sbml.jsbml.Annotation	SBMLReactionHelper.getAnnotationModifier(Edge edge)
org.sbml.jsbml.Annotation	SBMLReactionHelper.getAnnotationProduct(Edge edge)
org.sbml.jsbml.Annotation	SBMLReactionHelper.getAnnotationReactant(Edge edge)
Boolean	SBMLReactionHelper.getConstant(Edge reactionEdge)
String	SBMLReactionHelper.getID(Edge reactionEdge)
String	SBMLReactionHelper.getMetaIDModifier(Edge edge)
String	SBMLReactionHelper.getMetaIDProduct(Edge edge)
String	SBMLReactionHelper.getMetaIDReactant(Edge edge)
String	SBMLReactionHelper.getName(Edge reactionEdge)
org.sbml.jsbml.xml.XMLNode	SBMLReactionHelper.getNonRDFAnnotationModifier(Edge edge)
org.sbml.jsbml.xml.XMLNode	SBMLReactionHelper.getNonRDFAnnotationProduct(Edge edge)
org.sbml.jsbml.xml.XMLNode	SBMLReactionHelper.getNonRDFAnnotationReactant(Edge edge)
Object	SBMLReactionHelper.getNotesModifier(Edge edge)
Object	SBMLReactionHelper.getNotesProduct(Edge edge)
Object	SBMLReactionHelper.getNotesReactant(Edge edge)
static Boolean	SBMLHelper.getReactionConstant(Edge reactionEdge)	Returns the value of the attribute constant
static String	SBMLHelper.getReactionSpecies(Edge reactionEdge)	Returns the species
static String	SBMLHelper.getReactionSpeciesID(Edge reactionEdge)	Return the species id
static String	SBMLHelper.getReactionSpeciesName(Edge reactionEdge)	Returns the species name
String	SBMLReactionHelper.getSBOTermModifier(Edge edge)
String	SBMLReactionHelper.getSBOTermProduct(Edge edge)
String	SBMLReactionHelper.getSBOTermReactant(Edge edge)
String	SBMLReactionHelper.getSpecies(Edge reactionEdge)
static String	SBMLHelper.getStoichiometry(Edge reactionEdge)	Returns the value of the attribute stoichiometry
String	SBMLReactionHelper.getStoichiometry(Edge reactionEdge)
static Edge	SBMLHelper.initProductEdge(Edge e)
static Edge	SBMLHelper.initReactantEdge(Edge e)
static Boolean	SBMLHelper.isReactionConstant(Edge reactionEdge)	Indicates if there is set a value for constant
static Boolean	SBMLHelper.isReactionSpecies(Edge reactionEdge)	Indicates if the species attribute is set
static Boolean	SBMLHelper.isReactionSpeciesID(Edge reactionEdge)	Indicates if the species id attribute is set
static Boolean	SBMLHelper.isReactionSpeciesName(Edge reactionEdge)	Indicates if the species name attribute is set
static Boolean	SBMLHelper.isReactionStoichiometry(Edge reactionEdge)	Indicates if there is set a value for stoichiometry
Boolean	SBMLReactionHelper.isSetAnnotationModifier(Edge edge)
Boolean	SBMLReactionHelper.isSetAnnotationProduct(Edge edge)
Boolean	SBMLReactionHelper.isSetAnnotationReactant(Edge edge)
static boolean	SBMLHelper.isSetConstant(Edge edge)
Boolean	SBMLReactionHelper.isSetConstant(Edge reactionEdge)
Boolean	SBMLReactionHelper.isSetID(Edge reactionEdge)
Boolean	SBMLReactionHelper.isSetMetaIDModifier(Edge edge)
Boolean	SBMLReactionHelper.isSetMetaIDProduct(Edge edge)
Boolean	SBMLReactionHelper.isSetMetaIDReactant(Edge edge)
Boolean	SBMLReactionHelper.isSetName(Edge reactionEdge)
Boolean	SBMLReactionHelper.isSetNonRDFAnnotationModifier(Edge edge)
Boolean	SBMLReactionHelper.isSetNonRDFAnnotationProduct(Edge edge)
Boolean	SBMLReactionHelper.isSetNonRDFAnnotationReactant(Edge edge)
Boolean	SBMLReactionHelper.isSetNotesModifier(Edge edge)
Boolean	SBMLReactionHelper.isSetNotesProduct(Edge edge)
Boolean	SBMLReactionHelper.isSetNotesReactant(Edge edge)
static boolean	SBMLHelper.isSetReactionSpecies(Edge edge)
static boolean	SBMLHelper.isSetReactionSpeciesID(Edge edge)
static boolean	SBMLHelper.isSetReactionSpeciesName(Edge edge)
Boolean	SBMLReactionHelper.isSetSBOTermModifier(Edge edge)
Boolean	SBMLReactionHelper.isSetSBOTermProduct(Edge edge)
Boolean	SBMLReactionHelper.isSetSBOTermReactant(Edge edge)
Boolean	SBMLReactionHelper.isSetSpecies(Edge reactionEdge)
static boolean	SBMLHelper.isSetStoichiometry(Edge edge)
Boolean	SBMLReactionHelper.isSetStoichiometry(Edge reactionEdge)
void	SBMLReactionHelper.setAnnotationModifier(Edge reactionEdge, org.sbml.jsbml.Annotation annotation)
void	SBMLReactionHelper.setAnnotationProduct(Edge reactionEdge, org.sbml.jsbml.Annotation annotation)
void	SBMLReactionHelper.setAnnotationReactant(Edge reactionEdge, org.sbml.jsbml.Annotation annotation)
void	SBMLReactionHelper.setConstant(Edge reactionEdge, Boolean constant)
void	SBMLReactionHelper.setID(Edge reactionEdge, String ID)
void	SBMLReactionHelper.setMetaIDModifier(Edge reactionEdge, String metaID)
void	SBMLReactionHelper.setMetaIDProduct(Edge reactionEdge, String metaID)
void	SBMLReactionHelper.setMetaIDReactant(Edge reactionEdge, String metaID)
void	SBMLReactionHelper.setName(Edge reactionEdge, String name)
void	SBMLReactionHelper.setNonRDFAnnotationModifier(Edge reactionEdge, org.sbml.jsbml.xml.XMLNode xmlNode)
void	SBMLReactionHelper.setNonRDFAnnotationProduct(Edge reactionEdge, org.sbml.jsbml.xml.XMLNode xmlNode)
void	SBMLReactionHelper.setNonRDFAnnotationReactant(Edge reactionEdge, org.sbml.jsbml.xml.XMLNode xmlNode)
void	SBMLReactionHelper.setNotesModifier(Edge reactionEdge, String notes, org.sbml.jsbml.xml.XMLNode notesObj)
void	SBMLReactionHelper.setNotesProduct(Edge reactionEdge, String notes, org.sbml.jsbml.xml.XMLNode notesObj)
void	SBMLReactionHelper.setNotesReactant(Edge reactionEdge, String notes, org.sbml.jsbml.xml.XMLNode notesObj)
static void	SBMLHelper.setReactionConstant(Edge reactionEdge, Boolean constant)	Sets a value for the attribute constant
static void	SBMLHelper.setReactionSpecies(Edge reactionEdge, String species)	Sets the species of a reaction
static void	SBMLHelper.setReactionSpeciesID(Edge reactionEdge, String ID)	The id of the species of an reaction
static void	SBMLHelper.setReactionSpeciesName(Edge reactionEdge, String name)	The name of the species of a reaction
void	SBMLReactionHelper.setSBOTermModifier(Edge reactionEdge, String sboTerm)
void	SBMLReactionHelper.setSBOTermProduct(Edge reactionEdge, String sboTerm)
void	SBMLReactionHelper.setSBOTermReactant(Edge reactionEdge, String sboTerm)
void	SBMLReactionHelper.setSpecies(Edge reactionEdge, String species)
static void	SBMLHelper.setStoichiometry(Edge reactionEdge, Double stoichiometry)	Sets a value for the attribute stoichiometry
void	SBMLReactionHelper.setStoichiometry(Edge reactionEdge, Double stoichiometry)

Uses of Edge in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.graph_to_origin_mover

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.graph_to_origin_mover with parameters of type Edge

Modifier and Type	Method	Description
static void	CenterLayouterAlgorithm.moveBends(Edge e, double moveX, double moveY, HashMap<CoordinateAttribute,Vector2d> bends2newPositions)	Deprecated. Use EdgeHelper.moveBends(Edge,double,double,HashMap<CoordinateAttribute, Vector2d>) instead

Uses of Edge in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree

Methods in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree that return types with arguments of type Edge

Modifier and Type	Method	Description
HashSet<Edge>	TreeContainer.getEdges()

Constructor parameters in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree with type arguments of type Edge

Constructor	Description
TreeContainer(HashMap<Node,Integer> bfsNum, HashMap<Integer,Double> maxNodeHeight, HashSet<Edge> edges)

Uses of Edge in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup

Method parameters in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup with type arguments of type Edge

Modifier and Type	Method	Description
JMenuItem[]	DeleteNodesAlgorithm.getCurrentEdgeContextMenuItem(Collection<Edge> selectedEdges)
JMenuItem[]	NumberNodesAndEdgesAlgorithm.getCurrentEdgeContextMenuItem(Collection<Edge> selectedEdges)

Uses of Edge in org

Methods in org with parameters of type Edge

Modifier and Type	Method	Description
static CoordinateAttribute	AttributeHelper.addEdgeBend(Edge edge, double x, double y)
static CoordinateAttribute	AttributeHelper.addEdgeBend(Edge edge, double x, double y, boolean safeAdd)
static void	AttributeHelper.addEdgeBend(Edge edge, Vector2d point)
static void	AttributeHelper.addEdgeBends(Edge edge, Collection<Vector2d> points)
static String	AttributeHelper.getArrowhead(Edge edge)
static double	AttributeHelper.getArrowSize(Edge edge)
static String	AttributeHelper.getArrowtail(Edge edge)
static float[]	AttributeHelper.getDashInfo(Edge edge)
static ArrayList<CoordinateAttribute>	AttributeHelper.getEdgeBendCoordinateAttributes(Edge edge)
static ArrayList<Vector2d>	AttributeHelper.getEdgeBends(Edge edge)
static String	AttributeHelper.getEdgeBendStyle(Edge edge)
static EdgeLabelAttribute	AttributeHelper.getLabel(int index, Edge edge)	Get EdgeLabelAttribute (if available)
static String	AttributeHelper.getLabelConsumption(Edge e, String returnIfNull)
static String	AttributeHelper.getLabelProduction(Edge e, String returnIfNull)
static void	AttributeHelper.removeEdgeBends(Edge edge)
static void	AttributeHelper.setArrowhead(Edge edge, boolean show)
static void	AttributeHelper.setArrowhead(Edge edge, String knownShapeClassName)
static void	AttributeHelper.setArrowSize(Edge edge, double arrowSize)
static void	AttributeHelper.setArrowtail(Edge edge, boolean show)	Assign a arrow shape in the opposite direction.of an edge.
static void	AttributeHelper.setArrowtail(Edge edge, String knownShapeClassName)
static void	AttributeHelper.setBorderWidth(Edge edge, double frameThickness)
static void	AttributeHelper.setDashArray(Edge edge, float[] dashArray)
static void	AttributeHelper.setDashArray(Edge edge, float[] dashArray, float dashphase)
static void	AttributeHelper.setEdgeBendStyle(Edge edge, String shape)
static void	AttributeHelper.setKEGGhiddenCompoundInformation(Edge e, String compID)
static void	AttributeHelper.setLabel(Edge edge, String label)	Sets the Label of a Edge
static void	AttributeHelper.setLabel(Edge edge, String label, String fontName)	Sets the label of an edge
static void	AttributeHelper.setLabelConsumption(Edge e, String srcLabel)
static void	AttributeHelper.setLabelProduction(Edge e, String tgtLabel)
static void	AttributeHelper.setShape(Edge edge, String knownShapeClassName)

Uses of Edge in org.graffiti.event

Methods in org.graffiti.event that return Edge

Modifier and Type	Method	Description
Edge	EdgeEvent.getEdge()	Returns the originator of the event.
Edge	GraphEvent.getEdge()	Returns the edge that originates this event, e.g.: the edge that has been added.
Edge	NodeEvent.getEdge()	Returns the edge that originated this event.

Constructors in org.graffiti.event with parameters of type Edge

Constructor	Description
EdgeEvent(Edge edge)	Constructs an edge event object with the specified source component.
GraphEvent(Edge edge)	Constructs a graph event object with the specified source component.
NodeEvent(Node node, Edge edge)	Constructs a graph event object with the specified source components.

Uses of Edge in org.graffiti.graph

Classes in org.graffiti.graph that implement Edge

Modifier and Type	Class	Description
class	AbstractEdge	Provides default implementations of methods on edges.
class	AdjListEdge	Implementation of the Edge interface for a Graph with adjacency list representation.

Methods in org.graffiti.graph that return Edge

Modifier and Type	Method	Description
Edge	AbstractGraph.addEdge(Node source, Node target, boolean directed)	Adds a new edge to the current graph.
Edge	AbstractGraph.addEdge(Node source, Node target, boolean directed, CollectionAttribute col)	Adds a new edge to the current graph.
Edge	Graph.addEdge(Node source, Node target, boolean directed)	Adds a new Edge to the current Graph.
Edge	Graph.addEdge(Node source, Node target, boolean directed, CollectionAttribute col)	Adds a new Edge to the current Graph.
Edge	AbstractGraph.addEdgeCopy(Edge edge, Node source, Node target)	Adds a copy of the specified edge to the graph as a new edge between the specified source and target node.
Edge	Graph.addEdgeCopy(Edge edge, Node source, Node target)	Adds a copy of the specified Edge to the Graph as a new Edge between the specified source and target Node.

Methods in org.graffiti.graph that return types with arguments of type Edge

Modifier and Type	Method	Description
Collection<Edge>	AbstractNode.getAllInEdges()
Collection<Edge>	Node.getAllInEdges()	Union of getDirectedInEdges() and getUndirectedEdges() .
Collection<Edge>	AbstractNode.getAllOutEdges()
Collection<Edge>	Node.getAllOutEdges()	Union of getDirectedOutEdges() and getUndirectedEdges() .
Collection<Edge>	AbstractNode.getDirectedInEdges()	Returns a collection containing the directed, ingoing edges of the Node.
Collection<Edge>	Node.getDirectedInEdges()	Returns a collection containing the directed ingoing edges of the Node.
Iterator<Edge>	AdjListNode.getDirectedInEdgesIterator()	Returns an iterator containing the directed ingoing edges of the Node.
Iterator<Edge>	Node.getDirectedInEdgesIterator()	Returns an iterator containing the directed ingoing edges of the Node.
Collection<Edge>	AbstractNode.getDirectedOutEdges()	Returns a collection containing the directed outgoing edges of the Node.
Collection<Edge>	Node.getDirectedOutEdges()	Returns a collection containing the outgoing directed edges of the Node.
Iterator<Edge>	AdjListNode.getDirectedOutEdgesIterator()	Returns an iterator containing the outgoing directed edges of the Node.
Iterator<Edge>	Node.getDirectedOutEdgesIterator()	Returns an iterator containing the outgoing directed edges of the Node.
Collection<Edge>	AbstractGraph.getEdges()	Returns a java.util.Collection containing all the edges of the current graph.
Collection<Edge>	AbstractGraph.getEdges(Node n1, Node n2)	Returns a collection containing all the edges between n1 and n2.
Collection<Edge>	AbstractNode.getEdges()	Returns a collection containing all the ingoing and outgoing directed and undirected edges of the current Node.
Collection<Edge>	AdjListGraph.getEdges()
Collection<Edge>	AdjListGraph.getEdges(Node n1, Node n2)
Collection<Edge>	AdjListNode.getEdges()
Collection<Edge>	Graph.getEdges()	Returns a java.util.Collection containing all the edges of the current Graph.
Collection<Edge>	Graph.getEdges(Node n1, Node n2)	Returns a collection containing all the edges between n1 and n2.
Collection<Edge>	Node.getEdges()	Returns a collection containing all the ingoing and outgoing directed and undirected edges of the current Node.
Collection<Edge>	OptAdjListGraph.getEdges()	Returns a java.util.Collection containing all the edges of the current graph.
Iterator<Edge>	AbstractGraph.getEdgesIterator()	Returns an iterator over the edges of the graph.
Iterator<Edge>	AdjListNode.getEdgesIterator()	Returns an iterator containing all the ingoing and outgoing directed and undirected edges of the current Node.
Iterator<Edge>	Graph.getEdgesIterator()	Returns an iterator over the edges of the Graph.
Iterator<Edge>	Node.getEdgesIterator()	Returns an iterator containing all the ingoing and outgoing directed and undirected edges of the current Node.
Iterator<Edge>	OptAdjListGraph.getEdgesIterator()	Returns an iterator over the edges of the graph.
Collection<Edge>	AbstractNode.getUndirectedEdges()	Returns a collection containing the undirected edges of the Node.
Collection<Edge>	Node.getUndirectedEdges()	Returns a collection containing the undirected ingoing and outgoing edges of the Node.
Iterator<Edge>	AdjListNode.getUndirectedEdgesIterator()	Returns an iterator containing the undirected ingoing and outgoing edges of the Node.
Iterator<Edge>	Node.getUndirectedEdgesIterator()	Returns an iterator containing all undirected edges of the Node.

Methods in org.graffiti.graph with parameters of type Edge

Modifier and Type	Method	Description
Edge	AbstractGraph.addEdgeCopy(Edge edge, Node source, Node target)	Adds a copy of the specified edge to the graph as a new edge between the specified source and target node.
Edge	Graph.addEdgeCopy(Edge edge, Node source, Node target)	Adds a copy of the specified Edge to the Graph as a new Edge between the specified source and target Node.
boolean	AbstractGraph.containsEdge(Edge e)	Returns true, if the graph contains the specified edge, false otherwise.
boolean	Graph.containsEdge(Edge e)	Returns true, if the Graph contains the specified Edge, false otherwise.
boolean	OptAdjListGraph.containsEdge(Edge e)	Returns true, if the graph contains the specified edge, false otherwise.
void	AbstractGraph.deleteEdge(Edge e)	Deletes the given edge from the current graph.
void	Graph.deleteEdge(Edge e)	Deletes Edge e from the current Graph.

Uses of Edge in org.graffiti.plugin.algorithm

Method parameters in org.graffiti.plugin.algorithm with type arguments of type Edge

Modifier and Type	Method	Description
JMenuItem[]	ProvidesEdgeContextMenu.getCurrentEdgeContextMenuItem(Collection<Edge> selectedEdges)	This method should be implemented, as that it returns the desired Context-MenuItem for the Plugin.

Uses of Edge in org.graffiti.plugin.parameter

Methods in org.graffiti.plugin.parameter that return Edge

Modifier and Type	Method	Description
Edge	EdgeParameter.getEdge()	Returns the Edge contained in this EdgeParameter.

Constructors in org.graffiti.plugin.parameter with parameters of type Edge

Constructor	Description
EdgeParameter(Edge edge, String name, String description)	Constructs a new edge parameter.

Uses of Edge in org.graffiti.selection

Methods in org.graffiti.selection that return types with arguments of type Edge

Modifier and Type	Method	Description
Collection<Edge>	Selection.getEdges()	Returns the list of selected edges.

Methods in org.graffiti.selection with parameters of type Edge

Modifier and Type	Method	Description
void	Selection.add(Edge edge)	Adds the given edge to the list of selected edges.

Uses of Edge in org.graffiti.undo

Constructors in org.graffiti.undo with parameters of type Edge

Constructor	Description
AddEdgeEdit(Edge edge, Graph graph, Map<GraphElement,GraphElement> geMap)	Constructor for AddEdgeEdit.

Uses of Edge in org.graffiti.util

Methods in org.graffiti.util that return types with arguments of type Edge

Modifier and Type	Method	Description
static Collection<Edge>	GeneralUtils.getEdges(Node n1, Node n2)	Returns a Collection of edges between n1 (source) and n2 (target).

Uses of Edge in org.vanted.animation.animations

Constructors in org.vanted.animation.animations with parameters of type Edge

Constructor	Description
ArrowSizeAnimation(Edge attributable, List<DoubleTimePoint> dataPoints, double loopDuration)
ArrowSizeAnimation(Edge attributable, List<DoubleTimePoint> dataPoints, double loopDuration, double startTime)
ArrowSizeAnimation(Edge attributable, List<DoubleTimePoint> dataPoints, double loopDuration, double startTime, int noLoops)
ArrowSizeAnimation(Edge attributable, List<DoubleTimePoint> dataPoints, double loopDuration, double startTime, int noLoops, Looper looper)
ArrowSizeAnimation(Edge attributable, List<DoubleTimePoint> dataPoints, double loopDuration, double startTime, int noLoops, Looper looper, Interpolator interpolator)
LabelTextAnimation(Edge attributable, List<StringTimePoint> dataPoints, double loopDuration)
LabelTextAnimation(Edge attributable, List<StringTimePoint> dataPoints, double loopDuration, double startTime)
LabelTextAnimation(Edge attributable, List<StringTimePoint> dataPoints, double loopDuration, double startTime, int noLoops)
LabelTextAnimation(Edge attributable, List<StringTimePoint> dataPoints, double loopDuration, double startTime, int noLoops, Looper looper)

Uses of Edge in org.vanted.plugins.layout.adaptagrams.edgerouting

Methods in org.vanted.plugins.layout.adaptagrams.edgerouting with parameters of type Edge

Modifier and Type	Method	Description
static org.adaptagrams.ConnRef	AdaptagramsRouting.defineConnRef(org.adaptagrams.Router router, View view, Edge edge, int routingType)	Defines a ConnRef for an edge.
static org.adaptagrams.ConnRef	AdaptagramsRouting.defineConnRef(org.adaptagrams.Router router, View view, Edge edge, int srcConnDirFlag, int tgtConnDirFlag, int routingType)	Defines a ConnRef for an edge.
static org.adaptagrams.ConnRef	AdaptagramsRouting.defineConnRef(org.adaptagrams.Router router, View view, Edge edge, int srcConnDirFlag, int tgtConnDirFlag, int routingType, org.adaptagrams.AvoidCheckpoints avoidCheckpoints)	Defines a ConnRef for an edge.
static org.adaptagrams.ConnRef	AdaptagramsRouting.defineConnRef(org.adaptagrams.Router router, View view, Edge edge, int routingType, org.adaptagrams.AvoidCheckpoints avoidCheckpoints)	Defines a ConnRef for an edge.

Uses of Edge in org.vanted.plugins.layout.multilevelframework

Methods in org.vanted.plugins.layout.multilevelframework that return Edge

Modifier and Type	Method	Description
Edge	MultilevelGraph.addEdge(Node source, Node target)	Adds an undirected AdjListEdge to the topmost level (i.e.