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validate(Graph) - Method in interface org.graffiti.plugin.mode.GraphConstraint

Checks whether the specified graph satisfies the defined constraint.

validate(Document) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

validate(Document, URL) - Static method in class org.graffiti.plugin.XMLHelper

validateComponents() - Method in class org.graffiti.editor.dialog.AbstractParameterDialog

Checks if all the edit components have a syntactically correct input.

validateComponents() - Method in interface org.graffiti.editor.dialog.ParameterDialog

Checks if all the edit components have a syntactically correct input.

validateDescription(PluginDescription) - Method in class org.graffiti.managers.pluginmgr.PluginXMLParser

Validates the given current plugin description.

validateMaximum() - Method in class org.jfree.chart.ui.ColorBarPropertyEditPanel

Revalidate the range maximum.

validateMinimum() - Method in class org.jfree.chart.ui.ColorBarPropertyEditPanel

Revalidate the range minimum.

validateNumber(double, double, double, String) - Static method in enum org.vanted.plugins.layout.multilevelframework.MlfHelper

Check whether a number is finite and in range.

validateObject() - Method in class org.jfree.data.AbstractDataset

Validates the object.

validateRGB(double) - Method in class org.vanted.animation.data.ColorTimePoint

validFor(InputStream) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kegg_xml.KEGG_XML_Reader

validFor(InputStream) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kegg_xml.KEGG2_XML_Reader

validFor(InputStream) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_XML_Reader

validFor(InputStream) - Method in class org.graffiti.plugin.io.AbstractInputSerializer

validFor(InputStream) - Method in interface org.graffiti.plugin.io.InputSerializer

validFor(Graph) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.biopax.BioPAX_OWL_Writer

validFor(Graph) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.metatool.MetatoolWriter

validFor(Graph) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.pajek.PajekWriter

validFor(Graph) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.pajek.PovrayWriter

validFor(Graph) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_XML_Writer

validFor(Graph) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sif.SIFWriter

validFor(Graph) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.xwg_wilma.XWGSerializer

validFor(Graph) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kegg_xml.KEGG2_XML_Writer

validFor(Graph) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.petri_ina_pnt.PNTSerializer

validFor(Graph) - Method in class org.graffiti.plugin.io.AbstractOutputSerializer

As standard, an output serializer will be valid writer for any type of graph

validFor(Graph) - Method in interface org.graffiti.plugin.io.OutputSerializer

validFor(Graph) - Method in class org.graffiti.plugins.ios.exporters.gml.GMLWriter

validFor(Graph) - Method in class org.graffiti.plugins.ios.exporters.gmlxml.GMLXMLWriter

validFor(Graph) - Method in class org.graffiti.plugins.ios.exporters.graphml.GraphMLWriter

validFor(Graph) - Method in class org.graffiti.plugins.ios.exporters.graphviz.DOTSerializer

validGraphIndex - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.WorkSettings

vAlign - Variable in class info.clearthought.layout.TableLayoutConstraints

Verical justification if component occupies just one cell

value - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow

value - Variable in class org.graffiti.attributes.DoubleAttribute

The value of this attribute

value - Variable in class qmwi.kseg.som.diagram.DiagrammData

value() - Method in annotation type unit_test_support.TestValueRequired

Value - Interface in org.jfree.data

A general purpose interface for accessing a value.

VALUE - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants

VALUE_ATTRIBUTE_LITERAL - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLConstants

VALUE_DEFAULT - Static variable in class org.vanted.scaling.DPIHelper

Default value, when not setting any particular value.

VALUE_INDEX - Static variable in class org.jfree.chart.renderer.WaferMapRenderer

The default value index.

VALUE_LABELS - Static variable in class org.jfree.chart.plot.CompassPlot

A constant for the label type.

VALUE_LABELS - Static variable in class org.jfree.chart.plot.MeterPlot

Constant for the label type.

VALUE_TAG - Static variable in interface org.jfree.data.xml.DatasetTags

The 'Value' element name.

VALUE_UNSET_INTERNAL - Static variable in class org.vanted.scaling.DPIHelper

Internal value for checking if any values are stored.

ValueAndGraphElement - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection

ValueAndGraphElement(Comparable<?>, GraphElement) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ValueAndGraphElement

ValueAxis - Class in org.jfree.chart.axis

The base class for axes that display value data, where values are measured using the double primitive.

ValueAxisPlot - Interface in org.jfree.chart.plot

An interface that is implemented by plots that use a ValueAxis, providing a standard method to find the current data range.

valueChanged(ListSelectionEvent) - Method in class org.graffiti.editor.ViewTypeChooser

valueChanged(ListSelectionEvent) - Method in class org.graffiti.managers.pluginmgr.PluginManagerDialog

Called, if a value in the list changes.

valueChanged(ListSelectionEvent) - Method in class org.graffiti.managers.pluginmgr.PluginSelector

valueChanged(TreeSelectionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.CheckTreeManager

valueChanged(TreeSelectionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.algorithms.AlgorithmPanelFactory

valueChanged(TreeSelectionEvent) - Method in class org.graffiti.options.OptionsDialog

Called, iff a value in the tree was selected.

ValueDataset - Interface in org.jfree.data

An interface for a dataset that returns a single value.

ValueEditComponent - Interface in org.graffiti.plugin.editcomponent

A generic extension of a javax.swing.JComponent which allows editing of Attributes.

ValueEditComponentAdapter - Class in org.graffiti.plugin.editcomponent

Provides an adapter class implementing all listener methods.

ValueEditContainer - Interface in org.graffiti.editor.dialog

ValueEditContainer is an interface for an arbitrary component containing a set of ValueEditComponents.

valueForPathChanged(TreePath, Object) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.AbstractTreeTableModel

ValueHandler - Class in org.jfree.data.xml

A handler for reading a 'Value' element.

ValueHandler(RootHandler, ItemHandler) - Constructor for class org.jfree.data.xml.ValueHandler

Creates a new value handler.

ValueMarker - Class in org.jfree.chart.plot

A marker that represents a single fixed value.

ValueMarker(double) - Constructor for class org.jfree.chart.plot.ValueMarker

Creates a new marker.

ValueMarker(double, Paint, Stroke, Paint, Stroke, float) - Constructor for class org.jfree.chart.plot.ValueMarker

Creates a new value marker.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.NodeSortCommand

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.AddOnInstallResult

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping.DataMapping.ShowMappingResults

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggDatabases

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.GraffitiCharts

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.LegendType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.FisherOperationMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition.ConditionInfo

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.TtestInfo

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.KeggNavigationToolbarCommand.Command

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter.QueryAdvanced

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter.QueryType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.FeedDownloadType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.zoomfit.AlignNodesCommand.Command

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.EntryType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.kgmlGraphicsType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.ReactionType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.RelationType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.SubtypeName

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayError

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayWarning

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BundleParallelEdges.Shapes

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.AttributeCalculation

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.ModeOfAttributeOperation

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.HideOrShowChildNodes.HideOrShowOperation

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.LogicConnection

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.NodeOrEdge

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchLogic

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOperation

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.GroupLinkProcessingMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.SetLabelModeOfOperation

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SizeSetting

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SizeSettingDPIunit

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SizeSettingZoom

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.services.algorithms.SearchAlgorithms.LogicalOp

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.AlignmentSetting

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.ApplicationStatus

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.CondenseButtonLayout

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.FeatureSet

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.FolderPanel.Iconsize

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.graffiti.editor.HashType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.graffiti.editor.LoadSetting

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.graffiti.editor.MainFrame.HideOrDeactivateMenu

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.graffiti.editor.MessageType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.graffiti.event.AbstractEvent.EVENTTYPE

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.graffiti.event.PathComparisonResult

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.graffiti.plugin.algorithm.Category

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.graffiti.plugin.view.CoordinateSystem

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.graffiti.plugins.attributecomponents.simplelabel.Quadrant

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.graffiti.plugins.views.defaults.Corner

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.graffiti.plugins.views.defaults.DockingAttributeEditor.DockingModes

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.graffiti.plugins.views.defaults.DrawMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.graffiti.plugins.views.defaults.GradientFillAttributeEditor.NodeGradientModes

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.graffiti.plugins.views.defaults.Line

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.graffiti.plugins.views.defaults.ThicknessAttributeEditor.ArrowHeadModes

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.LabelFrameSetting

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.Release

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.UpdateInfoResult

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.vanted.animation.data.ColorMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.vanted.animation.LoopDuration

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.vanted.animation.NumberOfLoops

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.vanted.plugins.layout.multilevelframework.MlfHelper

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.vanted.plugins.layout.stressminimization.BackgroundStatus

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.vanted.plugins.layout.stressminimization.StressMinParamModel.InitialLayoutOption

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.vanted.plugins.layout.stressminimization.StressMinParamModel.MethodOption

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.vanted.scaling.scalers.component.HTMLScaleSupport.Tags

Returns the enum constant of this type with the specified name.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.NodeSortCommand

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.AddOnInstallResult

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping.DataMapping.ShowMappingResults

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggDatabases

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.GraffitiCharts

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.LegendType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.FisherOperationMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition.ConditionInfo

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.TtestInfo

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.KeggNavigationToolbarCommand.Command

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter.QueryAdvanced

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter.QueryType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.FeedDownloadType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.zoomfit.AlignNodesCommand.Command

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.EntryType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.kgmlGraphicsType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.ReactionType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.RelationType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.SubtypeName

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayError

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayWarning

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BundleParallelEdges.Shapes

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.AttributeCalculation

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.ModeOfAttributeOperation

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.HideOrShowChildNodes.HideOrShowOperation

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.LogicConnection

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.NodeOrEdge

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchLogic

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOperation

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.GroupLinkProcessingMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.SetLabelModeOfOperation

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SizeSetting

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SizeSettingDPIunit

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SizeSettingZoom

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.services.algorithms.SearchAlgorithms.LogicalOp

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.AlignmentSetting

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.ApplicationStatus

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.CondenseButtonLayout

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.FeatureSet

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.FolderPanel.Iconsize

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.graffiti.editor.HashType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.graffiti.editor.LoadSetting

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.graffiti.editor.MainFrame.HideOrDeactivateMenu

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.graffiti.editor.MessageType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.graffiti.event.AbstractEvent.EVENTTYPE

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.graffiti.event.PathComparisonResult

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.graffiti.plugin.algorithm.Category

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.graffiti.plugin.view.CoordinateSystem

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.graffiti.plugins.attributecomponents.simplelabel.Quadrant

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.graffiti.plugins.views.defaults.Corner

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.graffiti.plugins.views.defaults.DockingAttributeEditor.DockingModes

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.graffiti.plugins.views.defaults.DrawMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.graffiti.plugins.views.defaults.GradientFillAttributeEditor.NodeGradientModes

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.graffiti.plugins.views.defaults.Line

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.graffiti.plugins.views.defaults.ThicknessAttributeEditor.ArrowHeadModes

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.LabelFrameSetting

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.Release

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.UpdateInfoResult

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.vanted.animation.data.ColorMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.vanted.animation.LoopDuration

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.vanted.animation.NumberOfLoops

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.vanted.plugins.layout.multilevelframework.MlfHelper

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.vanted.plugins.layout.stressminimization.BackgroundStatus

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.vanted.plugins.layout.stressminimization.StressMinParamModel.InitialLayoutOption

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.vanted.plugins.layout.stressminimization.StressMinParamModel.MethodOption

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.vanted.scaling.scalers.component.HTMLScaleSupport.Tags

Returns an array containing the constants of this enum type, in the order they are declared.

Values - Interface in org.jfree.data

An interface through which (single-dimension) data values can be accessed.

Values2D - Interface in org.jfree.data

A general purpose interface that can be used to access a table of values.

valuesCount - Variable in class qmwi.kseg.som.diagram.AttributsAttribut

valuesPercent - Variable in class qmwi.kseg.som.diagram.AttributsAttribut

valuesSortIndex - Variable in class qmwi.kseg.som.diagram.AttributsAll

ValueTick - Class in org.jfree.chart.axis

A value tick.

ValueTick(double, String, TextAnchor, TextAnchor, double) - Constructor for class org.jfree.chart.axis.ValueTick

Creates a new value tick.

valueToJava2D(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.CyclicNumberAxis

Translates a value from data space to Java 2D space.

valueToJava2D(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.DateAxis

Translates the data value to the display coordinates (Java 2D User Space) of the chart.

valueToJava2D(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.LogarithmicAxis

Converts a data value to a coordinate in Java2D space, assuming that the axis runs along one edge of the specified plotArea.

valueToJava2D(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.NumberAxis

Converts a data value to a coordinate in Java2D space, assuming that the axis runs along one edge of the specified dataArea.

valueToJava2D(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.ValueAxis

Converts a data value to a coordinate in Java2D space, assuming that the axis runs along one edge of the specified dataArea.

valueToString(double) - Method in class org.jfree.chart.axis.DateTickUnit

Formats a value.

valueToString(double) - Method in class org.jfree.chart.axis.NumberTickUnit

Converts a value to a string.

valueToString(double) - Method in class org.jfree.chart.axis.SymbolicAxis

Converts a value to a string, using the list of symbolic values.

valueToString(double) - Method in class org.jfree.chart.axis.SymbolicTickUnit

Converts a value to a string, using the list of symbolic values.

valueToString(double) - Method in class org.jfree.chart.axis.TickUnit

Converts the supplied value to a string.

VANTED_BUILD - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.helper.DBEgravistoHelper

VANTED_BUILDDATE - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.helper.DBEgravistoHelper

VANTED_BUILDDATE_TEXTFORMAT - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.helper.DBEgravistoHelper

vanted_feature - package vanted_feature

VantedPreferences - Class in org.vanted

Global Preference class for VANTED.

VantedPreferences() - Constructor for class org.vanted.VantedPreferences

Variable - Class in placement

VARIABLE - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants

Variables - Class in placement

Variables() - Constructor for class placement.Variables

VARIETY - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition.ConditionInfo

Vector2d - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kgml

Vector2d - Class in org

Vector2d(double, double) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kgml.Vector2d

Vector2d(double, double) - Constructor for class org.Vector2d

Vector2d(Vector2d) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kgml.Vector2d

Vector2d(Point2D) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kgml.Vector2d

Vector2d(Point2D) - Constructor for class org.Vector2d

Vector2d(Point2D, Point2D) - Constructor for class org.Vector2d

Vector2d(Vector2d) - Constructor for class org.Vector2d

Vector2d(Vector2d, Vector2d) - Constructor for class org.Vector2d

Vector2df - Class in org

Vector2df(float, float) - Constructor for class org.Vector2df

Vector2df(Point2D) - Constructor for class org.Vector2df

Vector2df(Vector2d) - Constructor for class org.Vector2df

Vector2df(Vector2df) - Constructor for class org.Vector2df

Vector3d - Class in org

Vector3d(double, double, double) - Constructor for class org.Vector3d

Vector3d(Point2D) - Constructor for class org.Vector3d

Vector3d(Vector3d) - Constructor for class org.Vector3d

VectorTimePoint<T extends Number> - Class in org.vanted.animation.data

VectorTimePoint(double, Vector<T>) - Constructor for class org.vanted.animation.data.VectorTimePoint

VENDOR_ATTRIBUTE_LITERAL - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLConstants

vendor attribute

verifyRotation(String, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.VTextIcon

verifyRotation returns the best rotation for the string (ROTATE_NONE, ROTATE_LEFT, ROTATE_RIGHT) This is public static so you can use it to test a string without creating a VTextIcon from http://www.unicode.org/unicode/reports/tr9/tr9-3.html When setting text using the Arabic script in vertical lines, it is more common to employ a horizontal baseline that is rotated by 90� counterclockwise so that the characters are ordered from top to bottom.

Version - Class in org.graffiti.managers.pluginmgr

Represents an object, which contains a version number.

Version() - Constructor for class org.graffiti.managers.pluginmgr.Version

VERSION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants

VERSION - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

VERT_SPLITTER - Static variable in class org.graffiti.editor.MainFrame

The number of pixels for the vertical splitter's divider location.

VERTICAL - org.graffiti.plugins.views.defaults.GradientFillAttributeEditor.NodeGradientModes

VERTICAL - Static variable in class org.graffiti.editor.Rule

VERTICAL - Static variable in class org.jfree.chart.plot.PlotOrientation

For a plot where the range axis is vertical.

VERTICAL - Static variable in class org.jfree.chart.StandardLegendItemLayout

Useful constant for vertical orientation.

VERTICAL_THRESHOLD - org.graffiti.plugins.views.defaults.GradientFillAttributeEditor.NodeGradientModes

VERY_DARK_BLUE - Static variable in class org.jfree.chart.ChartColor

A very dark blue color.

VERY_DARK_CYAN - Static variable in class org.jfree.chart.ChartColor

A very dark cyan color.

VERY_DARK_GREEN - Static variable in class org.jfree.chart.ChartColor

A very dark green color.

VERY_DARK_MAGENTA - Static variable in class org.jfree.chart.ChartColor

A very dark magenta/purple color.

VERY_DARK_RED - Static variable in class org.jfree.chart.ChartColor

A very dark red color.

VERY_DARK_YELLOW - Static variable in class org.jfree.chart.ChartColor

A very dark yellow color.

VERY_LIGHT_BLUE - Static variable in class org.jfree.chart.ChartColor

A very light blue color.

VERY_LIGHT_CYAN - Static variable in class org.jfree.chart.ChartColor

Aa very light cyan color.

VERY_LIGHT_GREEN - Static variable in class org.jfree.chart.ChartColor

A very light green color.

VERY_LIGHT_MAGENTA - Static variable in class org.jfree.chart.ChartColor

A very light magenta color.

VERY_LIGHT_RED - Static variable in class org.jfree.chart.ChartColor

A very light red color.

VERY_LIGHT_YELLOW - Static variable in class org.jfree.chart.ChartColor

A very light yellow color.

View - Interface in org.graffiti.plugin.view

Represents a view of a plugin.

VIEW_CHOOSER_ALWAYS - org.graffiti.editor.LoadSetting

VIEW_CHOOSER_FOR_LARGE_GRAPHS_ONLY - org.graffiti.editor.LoadSetting

VIEW_CHOOSER_NEVER - org.graffiti.editor.LoadSetting

VIEW_CHOOSER_NEVER_DONT_ADD_VIEW_TO_EDITORSESSION - org.graffiti.editor.LoadSetting

View2D - Interface in org.graffiti.plugin.view

A 2D view as a graphical representation for a graph.

View3D - Interface in org.graffiti.plugin.view

DOCUMENT ME!

viewChanged(View) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.IPK_StandardTools

viewChanged(View) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.zoomfit.AlignNodesComponent

viewChanged(View) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.zoomfit.ZoomFitChangeComponent

viewChanged(View) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SelectNodesComponent

viewChanged(View) - Method in class org.graffiti.editor.FrameTabbedPane

viewChanged(View) - Method in class org.graffiti.managers.DefaultViewManager

viewChanged(View) - Method in class org.graffiti.plugin.inspector.SubtabHostTab

viewChanged(View) - Method in interface org.graffiti.plugin.view.ViewListener

This method is called when the view changes.

viewChanged(View) - Method in class org.graffiti.plugins.inspectors.defaults.Inspector

viewChanged(View) - Method in class org.graffiti.plugins.tools.enhancedzoomtool.ZoomChangeComponent

viewChanged(View) - Method in class org.graffiti.plugins.tools.zoomtool.ZoomChangeComponent

Deprecated.

ViewLabel - Class in org.graffiti.plugins.attributecomponents.simplelabel

ViewLabel(String, LabelFrameSetting, double, boolean, boolean, Color) - Constructor for class org.graffiti.plugins.attributecomponents.simplelabel.ViewLabel

ViewListener - Interface in org.graffiti.plugin.view

Interface for all who want to be noticed when a different view becomes active.

ViewManager - Interface in org.graffiti.managers

Provides an interface for managing a list of view types.

ViewManager.ViewManagerListener - Interface in org.graffiti.managers

Interfaces a view manager listener.

ViewNewAction - Class in org.graffiti.editor.actions

The action for creating a new view.

ViewNewAction(MainFrame, StringBundle) - Constructor for class org.graffiti.editor.actions.ViewNewAction

Creates a new ViewNewAction object.

viewTypeAdded(String) - Method in class org.graffiti.editor.MainFrame

viewTypeAdded(String) - Method in interface org.graffiti.managers.ViewManager.ViewManagerListener

Called, if a new view type is added to view manager.

ViewTypeChooser - Class in org.graffiti.editor

DOCUMENT ME!

ViewTypeChooser(Frame, String, String[]) - Constructor for class org.graffiti.editor.ViewTypeChooser

Constructs a new view type chooser, which is needed if there are several view types available.

VisibilityAnimation - Class in org.vanted.animation.animations

Animates the visibility of an Attributable object.
BooleanTimePoint data values:
True = Hidden
False = Visible

VisibilityAnimation(Attributable, List<BooleanTimePoint>, double) - Constructor for class org.vanted.animation.animations.VisibilityAnimation

VisibilityAnimation(Attributable, List<BooleanTimePoint>, double, double) - Constructor for class org.vanted.animation.animations.VisibilityAnimation

VisibilityAnimation(Attributable, List<BooleanTimePoint>, double, double, int) - Constructor for class org.vanted.animation.animations.VisibilityAnimation

VisibilityAnimation(Attributable, List<BooleanTimePoint>, double, double, int, Looper) - Constructor for class org.vanted.animation.animations.VisibilityAnimation

VISIBLE_ATTRIBUTE_LITERAL - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLConstants

visibleForView(View) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.TabBiomodels

visibleForView(View) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TabDBE

visibleForView(View) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.TabKegg

visibleForView(View) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.RimasTab

visibleForView(View) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.TabMetaCrop

visibleForView(View) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network.TabAglet

visibleForView(View) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network.TabNetworkAlgorithms

visibleForView(View) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics

visibleForView(View) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPatternLayout

visibleForView(View) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPluginControl

visibleForView(View) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabVisualisationControl

Deprecated.

visibleForView(View) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.TabExampleFiles

visibleForView(View) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.WorkflowHelper

Deprecated.

visibleForView(View) - Method in class org.graffiti.plugin.inspector.InspectorTab

visibleForView(View) - Method in class org.graffiti.plugin.inspector.SubtabHostTab

visibleForView(View) - Method in class org.graffiti.plugins.inspectors.defaults.AbstractTab

visibleRange(ContourDataset, Range, Range) - Method in class org.jfree.chart.plot.ContourPlot

Returns the visible z-range.

visibleRange(ContourDataset, Range, Range) - Static method in class org.jfree.chart.plot.ContourPlotUtilities

Returns the visible z-range.

visitPattern(int, Node[], Node[], String, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.PatternVistorLayouter

visitPattern(int, Node[], Node[], String, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.SelectResultsVisitor

VISUAL - org.graffiti.plugin.algorithm.Category

VOLUME_UNITS - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants

VTextIcon - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes

VTextIcon is an Icon implementation which draws a short string vertically.

VTextIcon(Component, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.VTextIcon

Creates a VTextIcon for the specified component with the specified label.

VTextIcon(Component, String, int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.VTextIcon

Creates a VTextIcon for the specified component with the specified label.

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