All Classes

Class	Description
AbsoluteInhibitorArrowShape
AbsoluteStimulationArrowShape	DOCUMENT ME!
AbstractAlgorithm	Implements some empty versions of non-obligatory methods.
AbstractAnimatedAlgorithm	Gives a standard implementation for the execute() method.
AbstractAnnotationProvider
AbstractArrowShape	DOCUMENT ME!
AbstractAttributable	Provides common functionality for Attributable classes.
AbstractAttribute	Provides common functionality for classes implementing the Attribute interface.
AbstractAttributeComponent	This component represents a org.graffiti.attributes.Attribute.
AbstractAttributeListener	An abstract adapter class for receiving attribute events.
AbstractButtonScaler	An AbstractButton-specific extension of ComponentScaler.
AbstractCategoryItemLabelGenerator	A base class that can be used to create a label or tooltip generator that can be assigned to a CategoryItemRenderer.
AbstractCategoryItemRenderer	An abstract base class that you can use to implement a new CategoryItemRenderer.
AbstractCellEditor
AbstractCollectionAttribute	Provides common functionality for CollectionAttribute instances.
AbstractDataset	An abstract implementation of the Dataset interface, containing a mechanism for registering change listeners.
AbstractDialogableEditComponent	AbstractDialogableEditComponent provides some default extensions of the AbstractValueEditComponent for those instances of ValueEditComponent which offer an arbitrary dialog for specifying the corresponding attribute value.
AbstractEdge	Provides default implementations of methods on edges.
AbstractEdgeListener	An abstract adapter class for receiving edge events.
AbstractEditorAlgorithm
AbstractEvent	This class is merely meant to group all the Node-/Edge-/ etc.
AbstractEvent.EVENTTYPE
AbstractExperimentDataProcessor	Management of action commands for data mapping.
AbstractGraffitiComponent	Abstract class for default containers.
AbstractGraffitiContainer	Abstract class for default containers.
AbstractGraffitiValueEditContainer	Provides an abstract implementation of the interface ValueEditContainer in graffiti style.
AbstractGraph	Provides further functionality for graphs.
AbstractGraphElement	GraphElements are Attributables which know the graph they belong to.
AbstractGraphElementComponent	Class that shares common members for all GraphElementComponents.
AbstractGraphListener	An abstract adapter class for receiving graph events.
AbstractInputSerializer	Provides additional methods to access a graph file from different kinds of input.
AbstractIntervalXYDataset	An base class that you can use to create new implementations of the XYDataset interface.
AbstractIOSerializer	Provides additional methods to read and write from/to different kinds of targets.
AbstractLimitableParameter	This abstract class provides a default implementation for the toXMLString method and specifies an interval size between the limitable parameter's values to be implemented for finer input control.
AbstractMode	This class provides a skeletal implementation of the interface Mode.
AbstractNode	Abstract class AbstractNode common functionality for Node implementations.
AbstractNodeListener	An abstract adapter class for receiving node events.
AbstractOptionPane	The default implementation of the option pane interface.
AbstractOutputSerializer	Provides additional methods to write a graph object.
AbstractParameterDialog	AbstractParameterDialog provides an abstract implementation of the ParamterDialog for editing name-value pairs.
AbstractRenderer	Base class providing common services for renderers.
AbstractResourceIOHandler
AbstractSeriesDataset	An abstract implementation of the SeriesDataset interface, containing a mechanism for registering change listeners.
AbstractSingleParameter	Implements functions that are common in all SingleParameters.
AbstractTab	Represents an inspector tab.
AbstractThreadSaveLayoutAlgorithm	Basis for Thread Safe (layout) Plugins and communication to the MainFrame
AbstractTool	Provides an abstract implementation of the Tool interface.
AbstractTreeTableModel	An abstract implementation of the TreeTableModel interface, handling the list of listeners.
AbstractUndoableTool	Superclass for all tools that provide undo information for their actions.
AbstractValueEditComponent	The class AbstractValueEditComponent provides some generic implementation for ValueEditComponents.
AbstractValueEditContainer	This class provides an abstract implementation of the ValueEditComponent-interface.
AbstractView	enclosing_type
AbstractXYDataset	An base class that you can use to create new implementations of the XYDataset interface.
AbstractXYItemLabelGenerator	A base class for creating item label generators.
AbstractXYItemRenderer	A base class that can be used to create new XYItemRenderer implementations.
AbstractXYZDataset	An base class that you can use to create new implementations of the XYZDataset interface.
ActiveSetPlacement
AdaptagramsLibrary
AdaptagramsRouting
AddAttributeAction	Represents an action to add an attribute to the selected item.
AddDiagramLegendAlgorithm
AddEdgeEdit	Class AddNodeEdit makes the add edge action undoable.
AddInterestingAttributes
AdditionalIdentifiersAlgorithm
AddNodeEdit	Class AddNodeEdit makes the add node action undoable.
Addon
AddonAdapter	Use to set up the Add-on initialization and icon.
AddOnInstallResult	Type of response upon add-on installation.
AddonInstantiationRuntimeException
AddonManagerPlugin	This class manages Add-ons, which are Vanted-plugins loaded during runtime.
AddonsOptionsPane
AddonTableModel
AddRandomClusterInformationAlgorithm
AdjListEdge	Implementation of the Edge interface for a Graph with adjacency list representation.
AdjListGraph	Implements the Graph -interface using an adjacency list representation of the graph.
AdjListNode	Implements a graph node with adjacency list representation.
AdvancedLabelTool	A tool for creating and editing labels of graphelements.
Algorithm	An Algorithm has to provide a function that returns an array of Parameters it needs, in order to give user interfaces the possibility to provide the Algorithm with appropriate.
AlgorithmListCellRenderer
AlgorithmManager	Provides a generic interface for a component managing a set of algorithms.
AlgorithmPanelFactory	The factory class initializes any algorithms, belonging to the Network.Analysis tab category.
AlgorithmResult	An AlgorithmResult is a map of results that were computed by a CalculatingAlgorithm.
AlgorithmServices
AlgorithmWithComponentDescription
AlignmentSetting
AlignNodesCommand
AlignNodesCommand.Command
AlignNodesComponent	DOCUMENT ME!
AllPathsSelectionAlgorithm
AllPermissionPolicy
AllSuperGraphsCreator
AlternativeIDannotationStatistics
AlternativeIdentifiersPlugin
AlternativeIdentifierTableData
AnimatedAlgorithm	An AnimatedAlgorithm provides the possibility to execute the underlying algorithm in steps, so that the intermediate results can be seen.
Animation<T extends TimePoint>	The Animation class represents DISCRETE Animation.
Animator
AnimatorAdapter<T>	Adapter for the AnimatorListener interface, providing default empty implementation.
AnimatorData
AnimatorListener<T>
Annotation
AnnotationProvider
ApplicationStatus
ApplyAlternativeIdentifiersTo
ApplyGraphLayout
ApplyGraphLayoutPlugin
AreaChartDemo	A simple demonstration application showing how to create an area chart using data from a CategoryDataset.
AreaManager
AreaRenderer	A category item renderer that draws area charts.
AreaRendererEndType	An enumeration of the 'end types' for an area renderer.
AreaXYRenderer	Deprecated. Use XYAreaRenderer.
ArrayLayout
ArrowNeedle	A needle in the shape of an arrow.
ArrowShape	DOCUMENT ME!
ArrowShapeAttribute
ArrowShapeCellRenderer
ArrowShapeEditComponent	Class used to display different node shapes.
ArrowSizeAnimation	Animates the size of an edge arrow
AssignmentArrowShape	DOCUMENT ME!
Attributable	Interfaces an object that contains a hierarchy of attributes.
Attribute	Interfaces an object, which contains an id and a value.
AttributeAdapter	Adapter for the AttributeListener interface, providing default empty implementation.
AttributeAndDataMappingEvaluation
AttributeCalculation
AttributeComponent	This component represents a org.graffiti.attributes.Attribute.
AttributeComponentManager	Contains the mapping between attribute classes and their representation as AttributeComponent classes.
AttributeComponentNotFoundException	DOCUMENT ME!
AttributeConstants	Useful Attribute Path-Names.
AttributeConsumer	Interfaces an object, which depends on the presence of a set of attributes.
AttributeDescription
AttributeEvent	Contains an attribute event.
AttributeExistsException	The AttributeExistsException will be thrown if a method tries to add an attribute at a location where another attribute already exists.
AttributeHelper	Attribute Helper Class - Makes it more easy to work with graph/node attributes.
AttributeListener	Interfaces an attribute events listener.
AttributeManager
AttributeNotFoundException	The AttributeNotFoundException will be thrown if a method tries to access a nonexistent attribute.
AttributePathNameSearchType
AttributeShape	DOCUMENT ME!
AttributeTypesManager	Provides a type manager for attributes.
AttributeValuePairSupport
AttributsAll	Insert the type's description here.
AttributsAttribut	Insert the type's description here.
AttributsClass	Insert the type's description here.
AttributsComputing	Insert the type's description here.
Aus	Insert the type's description here.
AWTImageAttribute	Contains the awt image graphic attribute.
Axis	The base class for all axes in JFreeChart.
AxisChangeEvent	A change event that encapsulates information about a change to an axis.
AxisChangeListener	The interface that must be supported by classes that wish to receive notification of changes to an axis.
AxisCollection	A collection of axes that have been assigned to the TOP, BOTTOM, LEFT or RIGHT of a chart.
AxisLocation	Used to indicate the location of an axis on a 2D plot, prior to knowing the orientation of the plot.
AxisPropertyEditPanel	A panel for editing the properties of an axis.
AxisSpace	A record that contains the space required at each edge of a plot.
AxisState	Instances of this class are used to carry state information for an axis during the drawing process.
BackgroundAlgorithm	Algorithm which runs in the background and able to notify other classes about state of the algorithm or the layout change of the graph.
BackgroundExecutionAlgorithm	This class handles the execution of a given BackgroundAlgorithm in the background, i.e.
BackgroundStatus	state values of the background algorithm
BackgroundTaskConsoleLogger
BackgroundTaskGUIprovider
BackgroundTaskHelper	Used to easily let a long running task running in background, with the possibility to provide a feedback of the progress,
BackgroundTaskPanelEntry
BackgroundTaskStatusProvider
BackgroundTaskStatusProvider
BackgroundTaskStatusProviderSupportingExternalCall
BackgroundTaskStatusProviderSupportingExternalCallImpl
BackgroundTaskWindow
BarabasiAlbertGraphGenerator	Needs implementation
BarChart3DDemo1	A simple demonstration application showing how to create a vertical 3D bar chart using data from a CategoryDataset.
BarChart3DDemo2	A simple demonstration application showing how to create a horizontal 3D bar chart using data from a CategoryDataset.
BarChart3DDemo3	This demonstration shows a 3D bar chart with item labels displayed.
BarChartDemo	A simple demonstration application showing how to create a bar chart.
BarChartDemo2	A simple demonstration application showing how to create a horizontal bar chart.
BarChartDemo3	A bar chart that uses a custom renderer to display different colors within a series.
BarChartDemo4	A bar chart with only two bars - here the 'maxBarWidth' attribute in the renderer prevents the bars from getting too wide.
BarChartDemo5	A simple demonstration application showing how to create a horizontal bar chart.
BarChartDemo6	Another horizontal bar chart demo.
BarChartDemo7	A simple demonstration application showing how to create a bar chart with a custom item label generator.
BarChartDemo8	A simple demonstration application showing how to create a bar chart with a custom item label generator.
BarRenderer	A CategoryItemRenderer that draws individual data items as bars.
BarRenderer3D	A renderer for bars with a 3D effect, for use with the CategoryPlot class.
Base64	Encodes and decodes to and from Base64 notation.
Base64	Encodes and decodes to and from Base64 notation.
Base64.InputStream	A Base64.InputStream will read data from another InputStream, given in the constructor, and encode/decode to/from Base64 notation on the fly.
Base64.InputStream	A Base64.InputStream will read data from another InputStream, given in the constructor, and encode/decode to/from Base64 notation on the fly.
Base64.OutputStream	A Base64.OutputStream will write data to another OutputStream, given in the constructor, and encode/decode to/from Base64 notation on the fly.
Base64.OutputStream	A Base64.OutputStream will write data to another OutputStream, given in the constructor, and encode/decode to/from Base64 notation on the fly.
BasicScaler	This scales the following: all fonts, all integers specified in BasicScaler.LOWER_SUFFIXES_INTEGERS, all icons and all insets.
BeanShellDesktopAlgorithm	Provides a Bean Shell Desktop for the execution of Bean Shell Scripts.
BeanShellDesktopPlugin	Plugin Adapter for the BeanShell Plugin.
BendsLaunchGUI	Deprecated.
BezierInterpolator	Interpolates the data values as if it were drawing a Bezier Curve. Note: Bezier interpolation will cause dramatic performance hits at large data point sizes.
BioMeanAndStandardDeviation
BioMeanAndStandardDeviation
BiomodelsAccessAdapter	Access adapter for the Biomodels Webservice client.
BiomodelsAccessAdapter.BiomodelsLoaderCallback
BiomodelsAccessAdapter.QueryAdvanced
BiomodelsAccessAdapter.QueryType	Types of models to be queried.
BiomodelsDBAccessPlugin
BiomodelsPanel	This is the Biomodels tab panel.
BioPAX_OWL_Reader	Imports Level 2 and 3 OWL Files to Vanted Graph.
BioPAX_OWL_ReaderPlugin
BioPAX_OWL_Writer	Takes a graph with a biochemical pathway, filters all attributes that could possibly belong to a BioPax-File and creates and OWL-File out of it
BioPAX_OWL_WriterPlugin
BioStatisticalCategoryDataset
Block	A block is a grouping of variables placed optimally with respect to a set of active constraints
BooleanAttribute	Contains a boolean value.
BooleanEditComponent	Represents a component, which can edit a boolean value.
BooleanParameter	Parameter that contains a Boolean value.
BooleanTimePoint
BooledAttribute	Class that encapsulates an Attribute and a boolean value.
BoolPair	Encapsulates two boolean values.
BoxAndWhiskerCalculator	A utility class that calculates the mean, median, quartiles Q1 and Q3, plus a list of outlier values...all from an arbitrary list of Number objects.
BoxAndWhiskerCategoryDataset	A category dataset that defines various medians, outliers and an average value for each item.
BoxAndWhiskerDemo	Demonstration of a box-and-whisker chart using a CategoryPlot.
BoxAndWhiskerItem	Represents one data item within a box-and-whisker dataset.
BoxAndWhiskerRenderer	A box-and-whisker renderer.
BoxAndWhiskerToolTipGenerator	An item label generator for plots that use data from a BoxAndWhiskerCategoryDataset.
BoxAndWhiskerXYDataset	An interface that defines data in the form of (x, max, min, average, median) tuples.
BoxAndWhiskerXYToolTipGenerator	An item label generator for plots that use data from a BoxAndWhiskerXYDataset.
BPbiochemicalReaction
BPBiochemicalReaction
BPcatalysis
BPCatalysis
BPcomplexAssembly
BPComplexAssembly
BPcontrol
BPControl
BPconversion
BPConversion
BPDegradation
BPGeneticInteraction
BPinteraction	interface for all interactions when a model is read and a graph is created each class has an own read and "write" method for exporting and importing.
BPInteraction	interface for all interactions when a model is read and a graph is created
BPmodulation
BPModulation
BPMolecularInteraction
BPphysicalInteraction
BPTemplateReaction
BPTemplateReactionRegulation
BPtransport
BPTransport
BPtransportWithBiochemicalReaction
BPTransportWithBiochemicalReaction
BringToFrontOrBackAlgorithm
BriteEntry
BriteHierarchy
BroadCastService	Creates a broadcast-service which allows sending and receiving of broadcast messages.
BroadCastTask
BSHinfo
BSHscriptMenuEntry	This class provides the menu entries for the BeanShell-Script Menu Items.
BubblePlotDemo	A bubble chart demo.
BubblyBubblesDemo	A demo that shows how matrix series can be used for charts that follow a constantly changing grid input.
BubblyBubblesDemo2	A demo that shows how matrix series can be used for charts that follow a constantly changing grid input.
BufferedImageResult
BuildInfo	A utility helper for accessing build information.
BundleParallelEdges
BundleParallelEdges.Shapes
ButtonOverlayView	An implementation of org.graffiti.plugin.view.View2D, that displays a graph.
ByteAttribute	Contains a byte
ByteEditComponent	Represents a gui component, which handles byte values.
CachedWebDownload
CalcClassPathJarsMd5	Calculates all MD5 sums for all the jars found on the classpath of the ClassLoader for VANTED, as provided by the bootstrap.
CalculateAttribute
CalculatingAlgorithm	After its execution a CalculatingAlgorithm has computed an AlgorithmResult, that can be obtained through the getResult() method.
CandlestickDemo	A demo showing a candlestick chart.
CandlestickRenderer	A renderer that draws candlesticks on an XYPlot (requires a HighLowDataset).
Category	An enum containing a set of categories for algorithms These fixed categories enable possiblities of grouping and searching algorithms Algorithms can be part of multiple categories
CategoryAnchor	Used to indicate one of three positions within a category: START, MIDDLE and END.
CategoryAnnotation	The interface that must be supported by annotations that are to be added to an CategoryPlot.
CategoryAxis	An axis that displays categories.
CategoryAxis3D	An axis that displays categories and has a 3D effect.
CategoryDataset	The interface for a dataset with one or more series, and values associated with categories.
CategoryDatasetHandler	A SAX handler for reading a CategoryDataset from an XML file.
CategoryItemEntity	A chart entity that represents one item within a category plot.
CategoryItemRenderer	A plug-in object that is used by the CategoryPlot class to display individual data items from a CategoryDataset.
CategoryItemRendererState	An object that retains temporary state information for a CategoryItemRenderer.
CategoryLabelGenerator	A category item label generator is an object that can be assigned to a CategoryItemRenderer and that assumes responsibility for creating text items to be used as labels for the items in a CategoryPlot.
CategoryLabelPosition	The attributes that control the position of the labels for the categories on a CategoryAxis.
CategoryLabelPositions	Records the label positions for a category axis.
CategoryLabelWidthType	Represents the width types for a category label.
CategoryPlot	A general plotting class that uses data from a CategoryDataset and renders each data item using a CategoryItemRenderer.
CategorySeriesHandler	A handler for reading a series for a category dataset.
CategoryStepChartDemo	A simple demonstration application showing how to create an area chart using data from a CategoryDataset.
CategoryStepRenderer	A "step" renderer similar to XYStepRenderer but that can be used with the CategoryPlot class.
CategoryTableXYDataset	An implementation variant of the TableXYDataset where every series shares the same x-values (required for generating stacked area charts).
CategoryTextAnnotation	A text annotation that can be placed on a CategoryPlot.
CategoryTick	A tick for a CategoryAxis.
CategoryToolTipGenerator	A category tool tip generator is an object that can be assigned to a CategoryItemRenderer and that assumes responsibility for creating text items to be used as tooltips for the items in a CategoryPlot.
CategoryToPieDataset	A PieDataset implementation that obtains its data from one row or column of a CategoryDataset.
CategoryURLGenerator	A URL generator for items in a CategoryDataset.
CategoryURLGeneratorTable	Deprecated. This class is no longer being used in JFreeChart and will be removed before version 1.0.0 is released.
CenterLayouterAlgorithm	DOCTODO: Include class header
CenterLayouterPlugin
ChangeAttributesEdit	ChangeAttributesEdit
ChangeAttributeValueAction	DOCUMENT ME!
ChangeEdgeStyle
ChangeElementStyle
ChangeLabelsAlgorithm	Deprecated.
ChangeNodeStyle
ChartAttribute
ChartAttributeComponent
ChartAttributeEditor
ChartAttributePlugin
ChartAttributePlugin
ChartChangeEvent	A change event that encapsulates information about a change to a chart.
ChartChangeListener	The interface that must be supported by classes that wish to receive notification of chart events.
ChartColor	Class to extend the number of Colors available to the charts.
ChartColorAttribute	All StringAttributes with the name id "chart_colors" will be converted into a ChartColorAttribute (see ChartAttributePlugin, where the mapping information from id to class type is initialized.
ChartColorAttributeEditor
ChartComponent
ChartComponentManager
ChartEntity	A class that captures information about some component of a chart (a bar, line etc).
ChartFactory	A collection of utility methods for creating some standard charts with JFreeChart.
ChartFrame	A frame for displaying a chart.
ChartMouseEvent	A mouse event for a chart that is displayed in a ChartPanel.
ChartMouseListener	The interface that must be implemented by classes that wish to receive ChartMouseEvent notifications.
ChartOptions
ChartPanel	A Swing GUI component for displaying a JFreeChart object.
ChartPanelConstants	Useful constants for the ChartPanel class.
ChartPanelSerializationTest	This demo tests the ability to serialize/deserialize a ChartPanel.
ChartProgressEvent	An event that contains information about the drawing progress of a chart.
ChartProgressListener	The interface that must be supported by classes that wish to receive notification of chart progress events.
ChartPropertyEditPanel	A panel for editing chart properties (includes subpanels for the title, legend and plot).
ChartRenderingInfo	A structure for storing rendering information from one call to the JFreeChart.draw() method.
ChartsColumnAttribute
ChartsColumnAttributeEditor
ChartTiming1	Draws a pie chart over and over for 10 seconds.
ChartTiming2	Draws a scatter plot over and over for 10 seconds.
ChartTiming3	Draws a scatter plot over and over for 10 seconds.
ChartTiming4	Draws a scatter plot over and over for 10 seconds.
ChartUtilities	A collection of utility methods for JFreeChart.
CheckTreeCellRenderer
CheckTreeManager
CheckTreeSelectionModel	You can ask the the above selection model whether B is selected as below: checkSelectionModel.isPathSelected(getPath(B), true); // the second argument tells that selection is to be digged.
CheckUpdateDate
CircleArrowShape
CircleConnectArrowShape
CircleDrawer	An implementation of the Drawable interface, to illustrate the use of the XYDrawableAnnotation class.
CircleLayouterAlgorithm	Places all nodes on a circle with a user specified radius.
CircleLayouterPlugin	Plugin container for the CircleLayoutAlgorithm.
CircleLayouterWithMinimumCrossingsAlgorithm	Places all nodes on a circle with a user specified radius.
CircleNodeShape	Class representing a circle.
CircleSearchAndLayoutAlgorithm	Searches for circular sub-graphs and optionally applies a CircleLayouter.
CircularNodeShape	Concrete class representing an ellipse.
ClassesAll	Insert the type's description here.
ClassesClass	Insert the type's description here.
ClassesNeuron	Insert the type's description here.
ClassesObject	Insert the type's description here.
ClassesObjectInputVector	Insert the type's description here.
ClassPathAttributeCollector	Searches for attributes in the current CLASSPATH.
ClassPathPluginDescriptionCollector	Searches for plugin description files in the current CLASSPATH.
ClearSelection
ClickableHTMLtableCellRenderer
ClickableInspectorLabel
ClipboardService
ClipPath	This class would typically be used with a ContourPlot.
CloneViewAction	Represents an action, which can clone the current view.
CloseAllWindows
CloseViewAction	Represents a clone view action.
ClusterAnalysisMain	Contains the graffiti editor.
ClusterBackgroundDraw
ClusterColorAttribute	All StringAttributes with the name id "chart_colors" will be converted into a ChartColorAttribute (see ChartAttributePlugin, where the mapping information from id to class type is initialized.
ClusterColorAttributeEditor
ClusterColorAttributePlugin
ClusterColorParameter
ClusteredXYBarRenderer	An extension of XYBarRenderer that displays bars for different series values at the same x next to each other.
ClusterGraphLayout
ClusterHelperToolbarComponent	DOCUMENT ME!
ClusterHistogramFisherTest
ClusterIndividualLayout
ClusterOverviewNetworkLaunchGui
ClusterSplashScreen
CoarsenedGraph	Adds a method to get the MergedNodes of a coarsening level to the Graph interface.
CollectionAttribute	Contains a Collection of Attributes.
Color_CIE_Lab
ColorAnimation	Animates the color of an Attributable object.
ColorAttribute	Contains the color graphic attribute.
ColorBar	A color bar.
ColorBarPropertyEditPanel	A ColorBarPropertyEditPanel.
ColorChooserEditComponent	This class provides an edit component for editing color attributes by offering a JColorChooser.
ColorHelper
ColorizeAlgorithm
ColorizeSuperGraphAlgorithm
ColorMode
ColorPalette	Defines palette used in Contour Plots.
ColorParameter
Colors
ColorScaleLegendAlgorithm
ColorSetAndGetSupport
ColorTimePoint
ColorUtil
ColorXYZ
CombinationDataset	Interface that describes the new methods that any combined dataset needs to implement.
CombinedCategoryPlotDemo1	A demo for the CombinedDomainCategoryPlot class.
CombinedCategoryPlotDemo2	A demo for the CombinedRangeCategoryPlot class.
CombinedDataset	This class can combine instances of XYDataset, HighLowDataset and IntervalXYDataset together exposing the union of all the series under one dataset.
CombinedDomainCategoryPlot	A combined category plot where the domain axis is shared.
CombinedDomainXYPlot	An extension of XYPlot that contains multiple subplots that share a common domain axis.
CombinedRangeCategoryPlot	A combined category plot where the range axis is shared.
CombinedRangeXYPlot	An extension of XYPlot that contains multiple subplots that share a common range axis.
CombinedXYPlotDemo1	A demonstration application showing how to create a vertical combined chart.
CombinedXYPlotDemo2	A demonstration application showing how to create a combined chart.
CombinedXYPlotDemo3	A demonstration application showing how to create a combined chart using...
CombinedXYPlotDemo4	A demonstration application showing how to create a vertical combined chart.
CombinedXYPlotDemo5	A demonstration application showing how to create a combined chart using...
CombineMappingData
ComboBoxEditComponent	Displays a combo box to let the user choose from several possibilities.
CommandLineStart
CompassDemo	A demo application showing how to use the CompassPlot class.
CompassDemo2	A simple demonstration application showing how to...
CompassFormat	A formatter that displays numbers as directions.
CompassFormatDemo	A demo of the CompassFormat class.
CompassPlot	A specialised plot that draws a compass to indicate a direction based on the value from a ValueDataset.
ComplexShape
Component
ComponentRegulator	Notice: it is advisable to not access it directly, but through the provided ScalingCoordinator, because of factor conversions.
ComponentScaler	Applicable to initiated Swing Components.
CompositeAttribute	Interfaces a composite attribute.
CompositeIcon	CompositeIcon is an Icon implementation which draws two icons with a specified relative position: LEFT, RIGHT, TOP, BOTTOM specify how icon1 is drawn relative to icon2 CENTER: icon1 is drawn first, icon2 is drawn over it and with horizontal and vertical orientations within the alloted space It's useful with VTextIcon when you want an icon with your text: if icon1 is the graphic icon and icon2 is the VTextIcon, you get a similar effect to a JLabel with a graphic icon and text
CompoundAttribute
CompoundImageAttributeComponent
CompoundImageAttributeEditor
CompoundImageAttributePlugin
CompoundImagePositionAttributeEditor
CompoundListEditor
CompoundPositionAttribute
ComputeAttributesAlgorithm
CondenseButtonLayout
Condition
Condition.ConditionInfo
ConditionInterface
ConfigureViewAction
ConnectedComponentLayout
ConnectedComponentPlugin
ConstantsName
Constraint
ConstraintCheckerListener	Defines a listener to the GraphConstraintChecker.
ContainsTabbedPane
ContextMenuHelper
ContextMenuManager	Abstract basis for the context menu managers, not used at the moment.
ContinuousAnimation<T extends InterpolatableTimePoint>	Similar to a normal animation but contains an Interpolator so that the animation can transition from one data point value to another data point value in a progressive manner.
ContourDataset	The interface through which JFreeChart obtains data in the form of (x, y, z) items - used for XY and XYZ plots.
ContourEntity	Represents an item on a contour chart.
ContourPlot	A class for creating shaded contours.
ContourPlotDemo	A demonstration application to illustrate ContourPlot.
ContourPlotDemo2	A demonstration application to illustrate ContourPlot.
ContourPlotUtilities	Some utility methods for the ContourPlot class.
ContourToolTipGenerator	Interface for a tooltip generator for plots that use data from a ContourDataset.
ContourValuePlot	An interface defining methods related to contour plots.
ContTable
CoordinateAttribute	Contains the coordinate graphic attribute.
CoordinateSystem
CopyAction	Represents a graph element copy action.
CopyDataTableAlgorithm
CopyPatternLayoutAlgorithm
Corner
CorrelationResult
CosineInterpolator
CountCircularCrossingsAlgorithm
CreateClusterGraphAlgorithm
CreateDirectChildrenClustersHistogramAlgorithm
CreateDistanceMatrixAlgorithm
CreateFuncatGraphAlgorithm
CreateGOchildrenAverageDataDiagramAlgorithm
CreateGOchildrenClustersHistogramAlgorithm
CreateGOchildrenTtestHistogramAlgorithm
CreateGOtreeAlgorithm
CreateHierarchyTree	Deprecated.
CreateKEGGOrthologyGraphAlgorithm	This class replaces the CreateFuncatGraphAlgorithm, The first class created KEGG hierarchies based on direct given hierarchies (using alternative labels in the nodes), or
CreateKeggReactionNetworkAlgorithm
CreateOrgSpecificSuperGraphsAlgorithm
CrosshairDemo1	A simple demonstration of the crosshairs that can be displayed in an XYPlot.
CrosshairState	Maintains state information about crosshairs on a plot.
CSV_SOM_dataEntry
CSVreader
CubicInterpolator	Provides true continuity throughout the animation.
CustomFullscreenView
CustomPieURLGenerator	A custom URL generator for pie charts.
CustomXYToolTipGenerator	A tool tip generator that stores custom tooltips.
CustomXYURLGenerator	A custom URL generator.
CutAction	Represents a cut of graph elements action.
CyclicNumberAxis	This class extends NumberAxis and handles cycling.
CyclicXYItemRenderer	The Cyclic XY item renderer is specially designed to handle cyclic axis.
CyclicXYPlotDemo	Demo for an XY plot, with a cyclic axis and renderer
Dash	Class that encapsulates the information needed to specify stroke properties.
DataBase2GUI
DatabaseFileStatusService
DataColumnHeader	Represensts a Data Column Header in the Gene Expression Excel table.
DataDragAndDropHandler
DataMapping
DataMapping.ShowMappingResults
DataMappingId
DataMappingTypeManager
DataMappingTypeManagerInterface
DataPackageResources	A resource bundle that stores all the items that might need localisation.
DataPackageResources_de	A resource bundle that stores all the items that might need localisation.
DataPackageResources_es	A resource bundle that stores all the items that might need localisation.
DataPackageResources_fr	A resource bundle that stores all the items that might need localisation.
DataPackageResources_pl	A resource bundle that stores all the items that might need localisation.
DataPackageResources_ru	A resource bundle that stores all the items that might need localisation.
DataRowExcelExport	Holds an ordered List of ConditionInterface, SampleInterface and NumericMeasurementInterface.
Dataset	The base interface for data sets.
DataSet
DatasetChangeEvent	A change event that encapsulates information about a change to a dataset.
DatasetChangeListener	The interface that must be supported by classes that wish to receive notification of changes to a dataset.
DatasetGroup	A class that is used to group datasets.
DatasetReader	A utility class for reading datasets from XML.
DatasetRenderingOrder	Defines the tokens that indicate the rendering order for datasets in a CategoryPlot or an XYPlot.
DataSetRow
DataSetTable
DatasetTags	Constants for the tags that identify the elements in the XML files.
DatasetUtilities	A collection of useful static methods relating to datasets.
DataUtilities	Utility methods for use with some of the data classes (but not the datasets, see DatasetUtilities).
DateAxis	The base class for axes that display dates.
DateRange	A range specified in terms of two java.util.Date objects.
DateTick	A tick used by the DateAxis class.
DateTickMarkPosition	Used to indicate the required position of tick marks on a date axis relative to the underlying time period.
DateTickUnit	A tick unit for use by subclasses of DateAxis.
DateTitle	A chart title that displays the date.
DavidTestAlgorithm	Executes the David et.
DavidTestPlugin
Day	Represents a single day in the range 1-Jan-1900 to 31-Dec-9999.
DBE_EditorPluginAdapter
DBE_PluginAdapter
DBEattribute
DBEgravistoHelper
DBEinputFileReader
DBEplugin
DBEsplashScreen
DBGETresult
DebugFrame
DebugPanel
DebugSelectionCheck
DeepCopy	Guarantees a deep copy.
DefaultAlgorithmManager	Manages the map of available algorithms: key = algorithm class names, value = algorithm
DefaultAlgorithmResult	DOCUMENT ME!
DefaultBoxAndWhiskerCategoryDataset	A convenience class that provides a default implementation of the BoxAndWhiskerCategoryDataset interface.
DefaultBoxAndWhiskerXYDataset	A simple implementation of the BoxAndWhiskerXYDataset.
DefaultCategoryDataset	A default implementation of the CategoryDataset interface.
DefaultCategoryItemRenderer	A default renderer for the CategoryPlot class.
DefaultContextMenuManager	This is the default context menu manager, that is used by the enhanced editing tools for displaying a context menu.
DefaultContourDataset	A convenience class that provides a default implementation of the ContourDataset interface.
DefaultDrawingSupplier	A default implementation of the DrawingSupplier interface.
DefaultEditMode
DefaultEditModePlugin
DefaultEditPanel	Represents the edit panel in the inspector.
DefaultHighLowDataset	A simple implementation of the HighLowDataset.
DefaultIntervalCategoryDataset	A convenience class that provides a default implementation of the IntervalCategoryDataset interface.
DefaultIOManager	Handles the editor's IO serializers.
DefaultKeyedValue	A (key, value) pair.
DefaultKeyedValueDataset	A default implementation of the KeyedValueDataset interface.
DefaultKeyedValues	A collection of (key, value) pairs.
DefaultKeyedValues2D	A data structure that stores zero, one or many values, where each value is associated with two keys (a 'row' key and a 'column' key).
DefaultKeyedValues2DDataset	A default implementation of the KeyedValues2DDataset interface.
DefaultKeyedValuesDataset	A default implementation of the KeyedValuesDataset interface.
DefaultMeterDataset	Deprecated. Use ValueDataset instead, this interface mixes data and presentation items.
DefaultModeManager	Handles the editor's modes.
DefaultPageable	Default pageable implementation
DefaultParameterDialog	The default implementation of a parameter dialog.
DefaultPieDataset	A default implementation of the PieDataset interface.
DefaultPluginEntry	Represents a plugin entry in the plugin manager.
DefaultPluginManager	Manages the list of plugins.
DefaultPolarItemRenderer	A renderer that can be used with the PolarPlot class.
DefaultShapeFactory	Deprecated. No longer used.
DefaultStatisticalCategoryDataset	A convenience class that provides a default implementation of the StatisticalCategoryDataset interface.
DefaultTableXYDataset	An XYDataset where every series shares the same x-values (required for generating stacked area charts).
DefaultToolManager	Manages the list of tools.
DefaultURLattributeActionManager
DefaultValueDataset	A default implementation of the ValueDataset interface.
DefaultView	PlugIn for default view of graffiti graph editor
DefaultViewManager	Manages a list of view types.
DefaultWindDataset	A default implementation of the WindDataset interface.
DefaultXYItemRenderer	A default renderer for the XYPlot class.
DelayThread	This delay thread will help prevent too many calls in short time by catching the calls and only giving the last stored event after a short period of time to the actual event handler using a callback mechanism If it has delivered the event it will trigger "wait" and halt the thread A new event will then wake up the thread.
DelayThread.DelayedCallback	This callback interface is used by the DelayThread Implementing classes can set the method to be called
DeleteAction	Represents a graph element delete action.
DeleteAction
DeleteAttributeAction	DOCUMENT ME!
DeleteNodesAlgorithm	Labels all selected nodes with unique numbers.
DeleteNodesPlugin	Provides a spring embedder algorithm a la KK.
DemoDatasetFactory	A utility class for generating sample datasets for the demos.
DemoResources	A resource bundle that stores all the user interface items that might need localisation.
DemoResources_de	Localised resources for Germany.
DemoResources_es	A resource bundle that stores all the user interface items that might need localisation.
DemoResources_fr	Localised resources for France.
DemoResources_pl	A resource bundle that stores all the user interface items that might need localisation.
Dependency	Interface for dependency of a plugin.
Describable	Implementing classes have a name and description.
DescriptionPanel	A panel containing a chart description.
DesEncrypter
DesktopMenuManager	Manages menu entries for the internal frames contained in a desktop pane.
DiagrammData	Insert the type's description here.
DiagrammPaneData	Insert the type's description here.
DialShape	Used to indicate the background shape for a MeterPlot.
DiamondArrowShape
DiamondShape
DifferenceChartDemo	A simple demonstration of the XYDifferenceRenderer.
DifferenceChartDemo2	A simple demonstration of the XYDifferenceRenderer.
DimensionAttribute	Contains the graphic attribute dimension, that represents the minimal surrounding rectangle
DirkDemo
Displayable	DOCUMENT ME!
DistanceAccumulator
DistanceInfo
DistanceMatrix
DnDList	An extension of JList that supports drag and drop to rearrange its contents and to move objects in and out of the list.
DockingAttribute	Contains the graphic attribute docking for edges.
DockingAttributeEditor
DockingAttributeEditor.DockingModes
DomainInfo	An interface (optional) that can be implemented by a dataset to assist in determining the minimum and maximum values.
DOMEcho	This is a program to echo a DOM tree using DOM Level 2 interfaces.
DotLayoutAlgorithm
DOTreader
DOTSerializer	A very very simple writer for a graph in the dot format for Graphviz.
DOTSerializerPlugin	The plugin for reading and writing files from the Graphviz tools.
DoubleAndSourceList
DoubleAttribute	Contains a double
DoubleEditComponent	Represents a gui component, which handles double values.
DoubleEllipseShape
DoubleParameter	Parameter that can contain Double/double values.
DoubleTimePoint
DPIHelper	An utility helper that takes care of processing the DPI from a provided value (Slider value) and is responsible for managing the scaling preferences among some other useful functions in hand.
DragAndDropHandler	Use DataDragAndDropHandler or ExperimentDataDragAndDropHandler in case this handler processes input files for the creation of Substance datasets.
DrawableLegendItem	Represents a single item within a legend.
DrawingGroup
DrawingSupplier	A supplier of Paint and Stroke objects.
DrawMode
DualAxisDemo	A simple demonstration application showing how to create a dual axis chart based on data from two CategoryDataset instances.
DualAxisDemo2	An example of a time series chart.
DualAxisDemo3	A simple demonstration application showing how to create a dual axis chart based on data from two CategoryDataset instances.
DualAxisDemo4	A simple demonstration application showing how to create a dual axis chart based on data from two CategoryDataset instances.
DualAxisDemo5	This demo shows how to create a dual axis bar chart.
DuplicateEdge
DynamicDataDemo	A demonstration application showing a time series chart where you can dynamically add (random) data by clicking on a button.
DynamicDataDemo2	A demonstration application showing a time series chart where you can dynamically add (random) data by clicking on a button.
DynamicDataDemo3	A demonstration application showing a time series chart where you can dynamically add (random) data by clicking on a button.
DynamicDriveToolTipTagFragmentGenerator	Generates tooltips using the Dynamic Drive DHTML Tip Message library (http://www.dynamicdrive.com).
DynamicTimeSeriesCollection	A dynamic dataset.
Edge	Provides an interfaces for a GraphEdge.
EdgeAdapter	Adapter for the EdgeListener interface, providing default empty implementation.
EdgeArrowShapeEditComponent
EdgeBorder	DOCUMENT ME!
EdgeComponent	This component represents a org.graffiti.graph.Edge.
EdgeComponentHelper
EdgeComponentInterface	This component represents a org.graffiti.graph.Edge.
EdgeCountAccumulator
EdgeEditComponent	This class provides an edit component for selecting a single edge.
EdgeEvent	Contains an edge event.
EdgeGraphicAttribute	Defines all graphic attributes of an edge
EdgeHelper
EdgeLabelAttribute	DOCUMENT ME!
EdgeLabelPositionAttribute	DOCUMENT ME!
EdgeListener	Interface that contains methods which are called when an edge is changed.
EdgeParameter	This class contains a single Edge.
EdgeRoutingAlgorithm
EdgeRoutingPlugin
EdgeShape	DOCUMENT ME!
EdgeShapeAttribute	"Tagging" class only.
EdgeShapeEditComponent	Class used to display different edge shapes.
EdgeTab	Represents a tabulator in the inspector, which handles the properties of edges.
EditComponentManager	Contains the mapping between displayable classes and their representation as AttributeComponent classes.
EditComponentNotFoundException	Thrown if no EditComponent could be found.
EditorAlgorithm
EditorPlugin
EditorPluginAdapter	Plugin for editor.
EditorSession	Contains an editor session.
EditPanel	Represents the edit panel in the inspector.
EditRedoAction	Special class for redo capabilities.
EditUndoAction	Special class for undo capabilities.
Effect3D	An interface that should be implemented by renderers that use a 3D effect.
EllipseNodeShape	Concrete class representing an ellipse.
EmptyXYDataset	An empty dataset for testing purposes.
EnhDoubleEditComponent	Represents a gui component, which handles double values.
EnrichHiddenLabelsAlgorithm
EntityCollection	Defines the methods that a collection of entities is required to implement.
Entry
EntryType
EnumParameter
EnzClassEntry
EnzymeEntry
EnzymeService
EnzymeStatisticInformation
ErdosRenyiGraphGenerator	Algorithm to generate an Erdos Renyi random network of n nodes, using p edge probability.
ErrorMsg
EvaluateKGML
EventFrequencyDemo	A demo application showing how to display category data against a date axis.
ExchangeNodePositionsAlgorithm
ExitAction	Exits the editor.
ExpandReduceLayouterAlgorithm	Transforms the layout by doing a calculation like x=x*1.4 and y=y*1.4 for the nodes and bends positions.
ExpandReduceLayouterPlugin
ExpandSelectionAlgorithm	Labels all selected nodes with unique numbers.
Experiment
Experiment2GraphHelper
ExperimentConstructor
ExperimentData
ExperimentDataAnnotation
ExperimentDataAnnotationManager
ExperimentDataDragAndDropHandler
ExperimentDataFileReader
ExperimentDataFileWriter
ExperimentDataInfoPane
ExperimentDataPresenter	Receives experimental data and adds it to the GUI (e.g.
ExperimentDataProcessingManager
ExperimentDataProcessor
ExperimentDataReceiver	Deprecated.
ExperimentHeader
ExperimentHeaderInterface
ExperimentInterface
ExperimentLoader
ExportDataTableAlgorithm
ExtendedCategoryAxis	An extended version of the CategoryAxis class that supports sublabels on the axis.
ExtendedStackedBarRenderer	An extension of the StackedBarRenderer that can draw positive and negative totals at the top and bottom of the stacked bars.
Extension
ExtractMappingDataAlgorithm
FastScatterPlot	A fast scatter plot.
FastScatterPlotDemo	A demo of the fast scatter plot.
FastView
FastViewPlugin
FeatureSet
FeedDownloadType
FieldAlreadySetException	The FieldAlreadySetException will be thrown if setAttributable() of setParent() is invoked on an attribute where theses fields are not null anymore.
FileCloseAction	The action for closing a graph.
FileDownloadCache
FileDownloadStatusInformationProvider
FileDrop	This class makes it easy to drag and drop files from the operating system to a Java program.
FileDrop.Listener	Implement this inner interface to listen for when files are dropped.
FileDropBean	If you wish to use the FileDrop package as a JavaBean, this class will act as an interface to the FileDrop class that handles all the dirty work.
FileDropBeanBeanInfo
FileDropEvent	This is the event that is passed to the filesDropped(...) method in your FileDropListener when files are dropped onto a registered drop target.
FileDropListener	When using the FileDrop package in its JavaBean form, this listener will receive events when files are dropped onto registered targets.
FileHandlerUserDecision
FileHandlingListeners
FileHandlingManager
FileHelper	Created on 13/05/2004 Extended on 14/08/2015
FileNewAction	The action for a new graph.
FileOpenAction	The action for the file open dialog.
FileOpenAction	The action for the file open dialog.
FileSaveAction	The action for saving a graph.
FileSaveAllAction	The action for saving all open graphs.
FileSaveAsAction	The action for saving a graph to a named file.
FileSaveAsAction	The action for saving a graph to a named file.
FileSystemHandler
FileSystemIOConfig
FillColorAnimation	Animates the fill color of an attributable object.
FinalBoolean
FindReplaceDialog	Labels all selected nodes with unique numbers.
First	A simple introduction to using JFreeChart.
FisherOperationMode
FisherProbability
FishEyeLayout	An implementation of a fish eye layout algorithm.
FishEyeLayoutPlugin	Plugin for a fish eye layouter algorithm
FixedMillisecond	Wrapper for a java.util.Date object that allows it to be used as a RegularTimePeriod.
FloatAndDesc
FloatAttribute	Contains a float
FloatEditComponent	An edit component for editing floats.
FloatParameter	Parameter that can contain Float/float values.
FolderPanel
FolderPanel.Iconsize
FontAttribute
FontAttributeEditor
FontAttributePlugin
FontChooser
ForceDirectedEdgeLayout
ForceDirectedEdgeLayoutPlugin
ForceDirectedLayoutWrapper	Wrapper class to enable usage of the PatternspringEmbedder (a.k.a.
ForwardLooper	Similar to a StandardLooper but allows interpolators to interpolate from the end of the animation to the start of the animation.
FrameTabbedPane
FrameThicknessAnimation	Animates the frame thickness of a GraphElement object.
FTPhandler
Function2D	A function of the form y = f(x).
GanttCategoryDataset	An extension of the IntervalCategoryDataset interface that adds support for multiple sub-intervals.
GanttDemo1	A simple demonstration application showing how to create a Gantt chart.
GanttDemo2	A simple demonstration application showing how to create a Gantt chart with multiple bars per task.
GanttRenderer	A renderer for simple Gantt charts.
GaussFilter
GeneExpressionFileReader
GeneralEditorUtils	Some auxiliary routines that need editor functionality.
GeneralUtils
GenericBundle	A generalized localized resource bundle.
GenericFileFilter	Contains a generic file filter for filtering file extensions in the file chooser dialog.
GenericPlugin	An interface for a generic plugin for the graffiti graph editor.
GenericPluginAdapter	An adapter class for the generic plugin interface.
GlobalHotkeyManager
Gml2PathwayError
Gml2PathwayErrorInformation
Gml2PathwayWarning
Gml2PathwayWarningInformation
GMLgzWriter
GMLReader	This class provides a reader for graphs in gml format.
GMLReaderPlugin	DOCUMENT ME!
GMLSerializerPlugin	Provides a GML serializer.
GMLWriter	Provides a GML writer.
GMLXMLSerializerPlugin	Provides a GML serializer.
GMLXMLWriter	Provides a GML writer.
GOinformation
GoProcessing
GradientFillAttribute
GradientFillAttributeEditor
GradientFillAttributeEditor.NodeGradientModes
GraffitiAbstractUndoableEdit	GraffitiAbstractUndoableEdit
GraffitiAction	Represents the basic action in the graffiti system.
GraffitiAttributesPlugin	This class provides the default attribute types.
GraffitiButton	TODO
GraffitiButtonGroup	Represents a button group.
GraffitiCharts
GraffitiComponent	Interface for all GUIComponents used in the editor.
GraffitiContainer	DOCUMENT ME!
GraffitiEditor	Contains the graffiti editor.
GraffitiFrame	A specialized internal frame for the graffiti editor.
GraffitiInternalFrame	A specialized internal frame for the graffiti editor.
GraffitiMenu	DOCUMENT ME!
GraffitiMenuItem	TODO
GraffitiShape
GraffitiToggleButton	Abstract class for all ToggleButtons that should be used as GraffitiComponents.
GraffitiToolbar	TODO
GraffitiToolComponent
GraffitiValueEditComponents	This class is a plugin providing some default value edit components.
GraffitiView	An implementation of org.graffiti.plugin.view.View2D, that displays a graph.
GraffitiViewComponent	DOCUMENT ME!
Graph	A Graph consists of a set of nodes and a set of edges.
Graph
GraphAdapter	Adapter for the GraphListener interface, providing default empty implementation.
GraphComponentEditComponent	This class provides an edit component for parts of a graph.
GraphConstraint	A GraphConstraint is a constraint to the graph which can be validated and which is supposed to be satisfied all the time.
GraphConstraintChecker	This class checks constraints on the graph.
GraphElement	Interfaces a graph element.
GraphElementComponent	Class that shares common members for all GraphElementComponents.
GraphElementComponentInterface
GraphElementGraphicAttribute	Defines the common graphic attributes for nodes and edges
GraphElementHelper
GraphElementNotFoundException	The GraphElementNotFoundException will be thrown if a method tries to deal with a GraphElement which cannot be found in the Graph.
GraphElementsDeletionEdit	GraphElementsDeletionEdit makes deletion of graph elements undoable.
GraphElementsEdit	GraphElementsEdit is abstract class for building edits belong to the operations on graph elements like adding or removing.
GraphElementSelectionLabel
GraphElementShape	Interface combining NodeShape and EdgeShape.
GraphEvent	Contains a graph event.
GraphGenerationPlugin
GraphHelper	Graph Helper Class - A Collection of Helper routines for the work with graphs
GraphHelperBio
GraphicAttributeConstants	Defines constants used when accessing graphics attributes.
GraphicExport
GraphicHelper
Graphics
GraphListener	Interface that contains methods which are called when a graph is changed.
GraphMLEntityResolver	Class GraphMLEntityResolver implements the EntityResolver interface to resolve external entities.
GraphMLException	This exception is thrown when errors occur during parsing.
GraphMLFilter	Class GraphMLFilter processes the SAX events generated by the parser and builds the graph according to the events.
GraphMLgzWriter
GraphMLParser	Class GraphMLParser is responsible for setting up the XML parsing environment.
GraphMLReader	This class implements the interface to invoke the reading of graphML files.
GraphMLReaderPlugin	This plugin provides the functionality for reading graphML files.
GraphMLWriter	Class GraphMLWriter is the main class for writing a graph to a graphML file.
GraphMLWriterPlugin	The plugin class for the graphML writing package.
GraphParser
GraphPostProcessor	Interfaces a "graph post-processor", which is called once a graph is newly loaded from file and once a graph is newly created.
GraphScaler	Responsible for the synchronization between scaling and the established graph zooming, which acts as graph scaling.
GraphTab	Represents the tab, which contains the functionality to edit the attributes of the current graph object.
GraphTreeLayout	An implementation of a tree layout algorithm.
GraphTreeLayoutPlugin	Plugin for a tree layouter algorithm
GraphView
GravistoFileFilter
GravistoMain	Deprecated. because the Java Applet API is deprecated
GravistoMainHelper
GravistoPreferences
GravistoService	Provides access to global variables, needed for various extensions to Graffiti.
GreyPalette	A grey color palette.
Grid
GridLayoutAlgorithm	Resize+Gridlayout: Resizes all nodes and places them on a grid.
GridLayouterAlgorithm	Gridlayouter algorithm: Performs a layout where every node is placed on a position of a grid.
GridLayouterPlugin	Plugin for Gridlayouter algorithm
GridPlacementAlgorithm
GridPlacementPlugin
GroupedStackedBarRenderer	A renderer that draws stacked bars within groups.
GroupLinkProcessingMode
GrubbsTestAlgorithm	Executes the Grubbs' statistical test to detect outliers.
GUIhelper
GuiRow
HammingCalculator
HammingDistanceAlgorithm	This algorithm computes the hamming distances between directed graphs.
HammingDistancePlugin	Plugin for Hamming distance algorithm
HandlesAlgorithmData
HashMapAttribute	Maps a given id to an attribute.
HashType
HeatMapOptions
HelpContext	Represents the help context of an algorithm or a gui element in the editor.
HelperClass	Helps to set and get Attributes on Nodes and Edges.
HelperClass	Directive interface for all API Helper classes.
HideAnimation
HideOrShowChildNodes
HideOrShowChildNodes.HideOrShowOperation
HierarchyAlgorithm
HierarchyAlgorithms	Deprecated.
HierarchyWizard
HighDPISupport
HighLow	Represents one point in the high/low/open/close plot.
HighLowChartDemo	A demo showing a high-low-open-close chart.
HighLowChartDemo2	A demo showing a high-low-open-close chart with a moving average overlaid on top.
HighLowDataset	An interface that defines data in the form of (x, high, low, open, close) tuples.
HighLowItemLabelGenerator	A standard item label generator for plots that use data from a HighLowDataset.
HighLowRenderer	A renderer that draws high/low/open/close markers on an XYPlot (requires a HighLowDataset).
HistogramBin	A bin for the HistogramDataset class.
HistogramDataset	A dataset that can be used for creating histograms.
HistogramDemo	A demo of the HistogramDataset class.
HistogramDemo2	A demo of the HistogramDataset class.
HistogramType	A class for creating constants to represent the histogram type.
HomeFolder
Hour	Represents an hour in a specific day.
HTMLErrorMsg
HTMLScaler	Implement this to make sure your HTML-styled component's text will be scaled.
HTMLScaleSupport	It handles several HTML tags, see HTMLScaleSupport.Tags.ALL for detailed list.
HTMLScaleSupport.Tags
HTTPhandler
HttpHttpsURL	Handles automatic redirects from http to https.
HTTPShandler
IAPnodeTools
IContextMenuManager	The Interface a custom ContextManager should implement.
Id
IdAndGraphNode
IdRef
IllegalIdException	The IllegalIdException will be thrown if a method tries to add an attribute at a location where another attribute already exists.
ImageAssignmentCommand	Algorithm to assign an image to a node.
ImageAttribute	Contains the graphic attribute image.
ImageBundle	The resource bundle for the images used in the system.
ImageFileResultProcessor
ImageMapDemo1	A demo showing how to create an HTML image map for a bar chart.
ImageMapDemo2	A demo showing how to create an HTML image map for a pie chart.
ImageMapDemo3	A demo showing the construction of HTML image maps for a time series chart.
ImageMapDemo4	A demo showing how to create an HTML image map for a 3D bar chart.
ImageMapDemo5	Creates an HTML image map for an area chart.
ImageMapDemo6	Creates an HTML image map for a multiple pie chart.
ImageMapDemo7	A demo showing how to create an HTML image map for a scatter plot.
ImageTitle	A chart title that displays an image.
ImmutableCheckBox	A JCheckBox that remains unchanged regardless of the scaling.
ImmutableSlider	A JSlider that remains unchanged regardless of the scaling.
IndexAndString
IndexAttribute	Stores indices for nodes to allow fast index finding.
IndexedComponent
IndexedEdgeList	A list of edges
IndexedEdgeListAccumulator
IndexedGraphOperations	Some graph operations backed by org.vanted.addons.indexednodes.IndexedNodeSet.
IndexedNodeSet	A node collection that supports indexed access and fast index finding as well as speedy set operations.
IndexedNodeSetAccumulator
InhibitorArrowShape
InputSerializer	Interfaces a serializer, which is able to reconstruct a graph from a given input.
Inspector	Represents the main class of the inspector plugin.
InspectorContainer	Represents the central gui component of the inspector plugin.
InspectorPlugin	Provides a general interface for components to be plugged into an inspector.
InspectorTab	An InspectorTab is a generic component for an InspectorPlugin.
InstanceCreationException	An exception, which is thrown, iff the instantiation of a given class fails.
InstanceLoader	Represents an instance loader, which can be used to instantiate a class with the given name.
IntegerAttribute	Contains an integer.
IntegerEditComponent	Represents a GUI component, which handles integer values.
IntegerParameter	Parameter that can contain Integer/int values.
InternalFrameDemo	A simple internal frame demo.
InterpolatableTimePoint<T>	Inherit from this class instead of TimePoint if the data point is capable of being interpolated
Interpolator
InterpreteGOtermsAlgorithm
InterpreteParentGOtermsAlgorithm
IntervalBarChartDemo1	An interval bar chart.
IntervalBarRenderer	A renderer that handles the drawing of bars for a bar plot where each bar has a high and low value.
IntervalCategoryDataset	A category dataset that defines a value range for each series/category combination.
IntervalCategoryLabelGenerator	A label generator for plots that use data from an IntervalCategoryDataset.
IntervalCategoryToolTipGenerator	A tooltip generator for plots that use data from an IntervalCategoryDataset.
IntervalMarker	Represents an interval to be highlighted in some way.
IntervalXYDataset	An extension of the XYDataset interface that allows a range of data to be defined for the X values, the Y values, or both the X and Y values.
IntervalXYZDataset	An extension of the XYZDataset interface that allows a range of data to be defined for any of the X values, the Y values, and the Z values.
IntroduceBendsAlgorithm
IntroduceParallelEdgeBends
IntroduceSelfEdgeBends
InverseGraphPlugin
InverseGraphPluginAlgorithm
InvertSelectionAlgorithm	Labels all selected nodes with unique numbers.
InvertSelectionPlugin
IOManager	Handles the editor's IO serializers.
IOManager.IOManagerListener	Interfaces an io manager listener.
IOurl
IPK_AdvancedLabelTool	A modified editing tool
IPK_EditorPluginAdapter
IPK_MegaCreateTool	A modified editing tool
IPK_MegaMoveTool	A modified editing tool.
IPK_PluginAdapter
IPK_StandardTools	This plugin contains the modified standard editing tools.
IPKDefaultView	PlugIn for default view of graffiti graph editor
IPKeditComponents	This class is a plugin providing some default value edit components.
IPKGraffitiView	An implementation of org.graffiti.plugin.view.View2D, that displays a graph.
IPKnodeComponent
ItemHandler	A handler for reading key-value items.
ItemLabelAnchor	An enumeration of the positions that a value label can take, relative to an item in a CategoryPlot.
ItemLabelDemo1	A simple demo showing a label generator that only displays labels for items with a value that is greater than some threshold.
ItemLabelDemo2	A simple demo showing a label generator that displays labels that include a percentage calculation.
ItemLabelPosition	The attributes that control the position of the label for each data item on a chart.
IterateGridPlacementLayout
Java_1_5_compatibility
Java_1_5_compatibility_impl
JComponentParameter
JComponentParameterEditor
JDBCCategoryDataset	A CategoryDataset implementation over a database JDBC result set.
JDBCPieDataset	A PieDataset that reads data from a database via JDBC.
JDBCXYDataset	This class provides an XYDataset implementation over a database JDBC result set.
JDOM2DOM
JFreeChart	A chart class implemented using the Java 2D APIs.
JFreeChartAppletDemo	A simple applet containing two sample charts in a JTabbedPane.
JFreeChartDemo	The main frame in the chart demonstration application.
JFreeChartDemoBase	A simple class that allows the swing and servlet chart demonstrations to share chart generating code.
JFreeChartResources	Localised resources for JFreeChart.
JLabelHTMLlink	An extension of JLabel to support interactive links.
JLabelJavaHelpLink
JLabelScaler	A JLabel-specific extension of ComponentScaler.
JMButton
JMyProgressSplitPane
JOptionPaneScaler	A JOptionPane-specific extension of ComponentScaler.
JSplitPaneScaler	A JSplitPane-specific extension of ComponentScaler.
JTabbedPaneScaler	A JTabbedPane-specific extension of ComponentScaler.
JTextComponentScaler	A JTextComponent-specific extension of ComponentScaler.
JThermometer	An initial quick and dirty.
JTreeTable	This example shows how to create a simple JTreeTable component, by using a JTree as a renderer (and editor) for the cells in a particular column in the JTable.
KEGG_XML_Reader
KEGG_XML_Reader_g
KEGG_XML_ReaderPlugin
KEGG_XML_ReaderPlugin
KEGG2_XML_Reader
KEGG2_XML_Writer
KeggAccess	Handle KEGG Access with regards to the user.
KeggAPIService	A Kegg API REST accessor class It will retrieve (VATEND-)supported database objects from the KEGG database.
KeggAPIServiceHelper	This Kegg API Service helper will retrieve and cache results looked up from the Kegg public REST webservice.
KeggAttributePlugin
KeggBriteService	Service class providing hierarchy information using the BRITE database from KEGG If a brite hierarchy is not present in the cache, it will be loaded and stored 1.
KeggDatabases
KeggExpressionConverter
KeggExpressionDatapoint
KeggExpressionDataset
KeggExpressionReader
KeggGmlHelper
KeggGroupPartAttribute
KeggGroupPartAttributeEditor
KeggHelper	HTML Parser
KeggId
KeggIdAttribute
KeggNavigationToolbarCommand
KeggNavigationToolbarCommand.Command
KeggPathwayEntry
KeggReactionIdAttribute
KeggReactionIdAttributeEditor
KeggReactionTypeAttribute
KeggReactionTypeAttributeEditor
KeggRelationSrcTgtAttribute
KeggRelationSubTypeAttribute
KeggRelationSubTypeAttributeEditor
KeggRelationTypeAttribute
KeggRelationTypeAttributeEditor
KeggService
KeggSoapAndPathwayService
KeggToolbarPlugin	This plugin contains the standard editing tools.
KeggTypeAttribute
KeggTypeAttributeEditor
KeyedObject	A (key, object) pair.
KeyedObjects	A collection of (key, object) pairs.
KeyedObjects2D	A data structure that stores zero, one or many objects, where each object is associated with two keys (a 'row' key and a 'column' key).
KeyedValue	A (key, value) pair.
KeyedValueComparator	A utility class that can compare and order two KeyedValue instances and sort them into ascending or descending order by key or by value.
KeyedValueComparatorType	Uses to indicate the type of a KeyedValueComparator : 'by key' or 'by value'.
KeyedValueDataset	A dataset containing a single value.
KeyedValues	A collection of values where each value is associated with a key.
KeyedValues2D	An extension of the Values2D interface where a unique key is associated with the row and column indices.
KeyedValues2DDataset	A dataset containing (key, value) data items.
KeyedValuesDataset	A dataset containing (key, value) data items.
KeyHandler	A SAX handler for reading a key.
KeyToGroupMap	A class that maps keys (instances of Comparable to groups.
kgmlColor
KgmlEdMain	Contains the graffiti editor.
KGMLerrorWindow
kgmlGraphicsType
KGMLhelper
kgmlNumber	Used for specifying coordinates in the Kegg Graphics element
KineticLawHelper
KoEntry
LabelAlignmentAttribute
LabelAlignmentAttributeEditor
LabelAlignmentAttributePlugin
LabelAttribute	Contains the graphic attribute label
LabelColorAnimation	Animates a label's color in a GraphElement object.
LabelColorAttribute
LabelColorAttributePlugin
LabelComponent	This component represents a label for a node or an edge.
LabelFontAttribute
LabelFontAttributeEditor
LabelFontAttributePlugin
LabelFrameSetting
LabelStyleAttribute
LabelStyleAttributeEditor
LabelStyleAttributePlugin
LabelTextAnimation
LabelTool	A tool for creating and editing labels of graphelements.
LandmarkParameter
LandmarkSliderComponent	Slider component specially for selecting landmarks.
LaunchGui
LayeredBarChartDemo1	A simple demonstration application showing how to create a superimposed horizontal bar chart.
LayeredBarChartDemo2	A simple demonstration application showing how to create a superimposed vertical bar chart.
LayeredBarRenderer	A CategoryItemRenderer that represents data using bars which are superimposed.
LayoutAlgorithmWrapper	Provides a uniform interface for layout algorithms (e.g.
LeftSkewedRectShape
Legend	A chart legend shows the names and visual representations of the series that are plotted in a chart.
LegendChangeEvent	A change event that encapsulates information about a change to a chart legend.
LegendChangeListener	The interface that must be supported by classes that wish to receive notification of changes to a chart legend.
LegendItem	A legend item.
LegendItemCollection	A collection of legend items.
LegendItemEntity	An entity that represents an item within a legend.
LegendItemLayout	The interface for a legend item layout manager.
LegendManiaDemo	A demo that shows legend positions and legend bounding box options.
LegendRenderingOrder	Represents the order for rendering legend items.
LegendTitle	A chart title that displays a legend for the data in the chart.
LegendType
LevelRenderer	A CategoryItemRenderer that draws individual data items as horizontal lines, spaced in the same way as bars in a bar chart.
LimitableParameter	The value of a LimitableParameter can be limited by giving maximum and minimum values.
Line
LineAndShapeRenderer	A renderer that draws shapes for each data item, and lines between data items.
LinearInterpolator
LineChartDemo1	A simple demonstration application showing how to create a line chart using data from a CategoryDataset.
LineChartDemo2	A simple demonstration application showing how to create a line chart using data from an XYDataset.
LineChartDemo3	This line chart demo shows many series, each displaying a different shape.
LineChartDemo4	A simple line chart using data from an XYDataset.
LineChartDemo5	A line chart demo showing the use of a custom drawing supplier.
LineChartDemo6	A simple demonstration application showing how to create a line chart using data from an XYDataset.
LineEdgeShape	Class representing an edge as one straight line.
LineFunction2D	A function in the form y = a + bx.
LineModeAttribute	Attribute class for a dash-object, which encapsulates the information needed to specify stroke properties.
LineModeAttributeEditor
LineModeCellRenderer
LineModeEditComponent	Used to edit the values of a Dash.
LineModeSetting
LineNeedle	A needle that is represented by a line.
LinesSubstancesPlugin
LinesToSubstancesAlgorithm
LinkedHashMapAttribute	DOCUMENT ME!
LinkProcessor
LinkSelection
LinkVisualizationLegendPlugin
ListBiomodelsCellRenderer
ListenerManager	Class that is responsible to keep track of all the Listeners that are registered.
ListenerNotFoundException	Will be thrown, if a method tries to deal with a listener that cannot be found in the listener list.
ListenerRegistrationException	In general, the exception is used to indicate that a listener could not be registered.
ListOfDataRowsExcelExport
LoadGraphFileAttributeAction
LoadSaveOptionsPane	Handles some loading and saving stuff, e.g.: autosave, backups, backupDirectory, backupSuffix.
LoadSetting
LoadURLattributeAction
LogarithmicAxis	A numerical axis that uses a logarithmic scale.
LoggingProxy
LogicConnection
LongAttribute	Contains a long
LongEditComponent	Represents a gui component, which handles long values.
LongNeedle	A needle that is represented by a long line.
LookAndFeelNameAndClass	Initial prototype by mathiak in VantedPreferences.
LookAndFeelWrapper
LoopDuration	Represents the amount of time taken for a single loop of an animation. Primarily exists to prevent confusion about setting the duration to infinity (-1).
Looper
LVL2ModelConverter	takes an OWL model and fills the graph with edges, nodes and attributes
LVL3ModelConverter	takes an OWL model and fills the graph with edges, nodes and attributes
MAGEprocessor
Main	Starts Vanted.
MainFrame	Constructs a new graffiti frame, which contains the main gui components.
MainFrame.HideOrDeactivateMenu
ManageAddonDialog
Map
MapNumber
MapOrg
MappingButton
MappingDataEntity
MapResult
MarkComponent
Marker	The base class for markers that can be added to plots to highlight a value or range of values.
MarkerAxisBand	A band that can be added to a number axis to display regions.
MarkerDemo1	A demo application.
MatrixModel	Contains the matrix model, which is used by the JTable ui component.
MatrixSeries	Represents a dense matrix M[i,j] where each Mij item of the matrix has a value (default is 0).
MatrixSeriesCollection	Represents a collection of MatrixSeries that can be used as a dataset.
MatrixView	Provides a matrix view for the given graph.
MatrixViewPlugin	Provides a matrix view implementation.
MaximizeFrame	Internal frame that hides the title bar when maximized.
MaximizeLayout	Layour wrapper that modifies the behaviour of a LayoutManager for maximized JInternalFrames.
MaximizeManager	Manages a desktop containing MaximizeFrames or JInternalFrame with a MaximizeLayout.
MaxPairingHeap<T extends Comparable<T>>	Implements a pairing heap.
MaxPriorityQueue<T extends Comparable<T>>
MeanAndStandardDeviation	A simple data structure that holds a mean value and a standard deviation value.
Measurement
MegaCreateTool	A tool for creating and editing a graph.
MegaMoveTool	A tool for creating and editing a graph.
MegaTools	DOCUMENT ME!
MemoryHog	Memory hogs can be classes that tend to gather a noticeable set of resources, that due to being still referenced, cannot be taken care of by the GC and must be released explicitly from memory.
MemPlant
MemSample
MenuAdapter	Adapter for the MenuListener interface, providing default empty implementation.
MenuItemInfoDialog	Shows the info dialog for PatternGraffiti
MenuItemInfoDialog	Deprecated.
MergedNode	A Node implementation that represents several nodes in a coarsening level within MultilevelGraph.
MergeNodes	Merges nodes within the same network, while considering connecting edges and data mapping information.
Merger	Constructs coarsening levels.
MergeSort	An implementation of MergeSort, needs to be subclassed to provide a comparator.
MergeWindowsAlgorithm
MessageBox	Displays a Delphi/Borland style MessageBox.
MessageListener	Represents listener which gets messsages for theirs displaying on the GUI components (e.g.
Messages
MessageType
MetatoolIOPlugin
MetaToolReader
MetatoolWriter
MeterChartDemo	A meter chart demonstration application.
MeterChartDemo2	In this demo, a meter chart is saved to a scaled image file.
MeterDataset	Deprecated. Use ValueDataset instead, this interface mixes data and presentation items.
MeterLegend	A legend for meter plots.
MeterNeedle	The base class used to represent the needle on a CompassPlot.
MeterPlot	A plot that displays a single value in the context of several ranges ('normal', 'warning' and 'critical').
Millisecond	Represents a millisecond.
MinMaxCategoryPlotDemo	A simple demonstration application showing how to create a min/max category plot.
MinMaxCategoryRenderer	Renderer for drawing min max plot.
MinPairingHeap<T extends Comparable<T>>	Implements a pairing heap.
Minute	Represents a minute.
MlfHelper	Helper methods for the multilevel framework add-on.
MLFParamModel
Mode	The interface Mode describes a general mode in the editor.
ModeManager	Provides an interface for a modes manager.
ModeOfAttributeOperation
ModeToolbar	This toolbar is designed to be used as a representation of ogr.graffiti.plugin.mode.Mode.
Month	Represents a single month.
MouseZoomDemo	A simple demo showing mouse zooming.
MovingAverage	A utility class for calculating moving averages of time series data.
MovingAverageDemo	An example showing the calculation of a moving average for a time series.
MultiComplexShape
MultiDataView
MultiEllipseShape
MultiFileSelectionEditComponent
MultiFileSelectionParameter
MultilevelFrameworkLayout	Main class of the MLF add-on that contains the method that actually performs the layout.
MultilevelFrameworkPlugin	Since 2.8.0 the Multilevel Framework add-on is integrated into the core of Vanted as Vanted plug-in.
MultilevelGraph	This class stores the coarsening levels of a graph, as well as the original graph.
MultiNucleicAcidFeatureShape
MultipleAxisDemo1	This demo shows a time series chart that has multiple range axes.
MultipleAxisDemo2	An example of....
MultipleAxisDemo3	An example of....
MultipleDatasetDemo1	A demo showing the addition and removal of multiple datasets / renderers.
MultipleFileLoader
MultipleIterator	Class UniqueMultipleIterator encapsulates a number of instances implementing the java.util.Iterator interface.
MultiplePieChartDemo1	A simple demonstration application showing how to create a chart consisting of multiple pie charts.
MultiplePieChartDemo2	This example is similar to MultiplePieChartDemo1, but slices the dataset by column rather than by row.
MultiplePieChartDemo3	A simple demonstration application showing how to create a chart consisting of multiple pie charts.
MultiplePieChartDemo4	A simple demonstration application showing how to create a chart consisting of multiple pie charts.
MultiplePiePlot	A plot that displays multiple pie plots using data from a CategoryDataset.
MultiRectangleShape
MultiShapesXYDemo	A demonstration showing multiple shapes on an XYPlot.
MultiTreeLayout
MutableList<T>
MyBoolean
MyByteArrayInputStream
MyByteArrayOutputStream
MyChartCellRenderer
MyClusterGraphBasedReLayoutService
MyColorButton
MyColorGrid
MyComparableDataPoint
MyComparableNode
MyCorrlationFinder
MyDataJTable
MyDefaultShapeDrawingSupplier
MyDiagramPlacementSettingCellRenderer
MyDouble
MyDynamicObjectListModel
MyEntry
MyGraphicsTools
MyInputHelper
MyInputStreamCreator
MyJLabel
MyLegendComponent
MyLineAndShapeRenderer
MyNonInteractiveSpringEmb
myOp
MyOutputStream
MyPathWay	this class loads and adds all pathways from a model represents them in an own data structure
MyPathWay	this class loads and adds all pathways from a model represents them in an own data structure
MyPluginTreeNode
MyReactionList
MyRelationList
MyScatterBlock
MyScenarioEditor
MyScrollLabel
MySoftReference<T>
MySpecialValueCellRenderer
MyTools	DOCUMENT ME!
MyTools	DOCUMENT ME!
MyXML_XYDataset
NaivePatternFinderAlgorithm	Finds pattern within a given target graph.
NaivePatternFinderPlugin	The plugin wrapper for the NaivePatternFinderAlgorithm.
NamedColorSet
NavigationComponentView	provides an overview view with navigation window, which allows to browse the network.
NavigationTree
NeedEditComponents
NeedsSwingThread
NewsHelper
NimbusScaler	It is sufficient enough to rescale only the default font, this fires a property change and Nimbus does the rest alone.
NoCollectionAttributeException	The NoCollectionAttributeException will be thrown if a method tries to add an attribute to an attribute which is no CollectionAttribute.
Node	Provides an interfaces for a graph node.
NodeAdapter	Adapter for the NodeListener interface, providing default empty implementation.
NodeBorder	DOCUMENT ME!
NodeCacheEntry	Saves the information about pattern type and number for all nodes of a graph
NodeCacheEntry3d	Saves the information about pattern type and number for all nodes of a graph
NodeCombination
NodeComponent	This component represents a org.graffiti.graph.Node.
NodeComponentInterface	This component represents a org.graffiti.graph.Node.
NodeCountAccumulator
NodeEditComponent	This class provides an edit component for selecting a single node.
NodeEvent	Contains a node event.
NodeGraphicAttribute	Defines all grahic attributes of a node
NodeHelper
NodeHierarchy
NodeLabelAttribute	DOCUMENT ME!
NodeLabelPositionAttribute	DOCUMENT ME!
NodeListener	Interface that contains methods which are called when a node is changed.
NodeOrEdge
NodePair
NodeParameter	This class contains a single Node.
NodePathwayLinkVisualizationAttribute
NodePathwayLinkVisualizationAttributeEditor
NodePosition	DOCUMENT ME!
NodeShape	Interface extending GraphElementShape.
NodeShapeAttribute	"Tagging" class only.
NodeShapeCellRenderer
NodeShapeEditComponent	Class used to display different node shapes.
NodeSortCommand
NodeTab	Represents the tab of the inspector, which edits the properties of a node.
NodeTools
NoNextStepException	DOCUMENT ME!
NonGridContourDataset	A convenience class that extends the DefaultContourDataset to acommadate non-grid data.
NoOverlappLayoutAlgorithm	Epands the layout to remove any overlapping of nodes.
NoOverlappLayoutAlgorithmAS	Epands the layout to remove any overlapping of nodes.
NoOverlappLayouterPlugin
NoOverlappLayouterPlugin	Plugin container for Tims no overlapp algorithm AS.
NoOverlappOfClustersAlgorithm
NormalDistributionDemo	This demo shows a normal distribution function.
NormalDistributionFunction2D	A normal distribution function.
NormalizedMatrixSeries	Represents a dense normalized matrix M[i,j] where each Mij item of the matrix has a value (default is 0).
NotOutlierException	An exception that is generated by the Outlier, OutlierList and OutlierListCollection classes.
NucleicAcidFeatureShape
NullLayoutAlgorithm
NullView
NumberAxis	An axis for displaying numerical data.
NumberAxis3D	A standard linear value axis, for values displayed vertically.
NumberEditComponent	NumberEditComponent provides an abstract implementation for editing numerical attributes.
NumberNodesAndEdgesAlgorithm	Labels all selected nodes with unique numbers.
NumberOfLoops	Represents the number of times an animation is repeated. Primarily exists to prevent confusion about setting noLoops to infinity (-1).
NumberTick	A numerical tick.
NumberTickUnit	A numerical tick unit.
NumericMeasurement
NumericMeasurementInterface
ObjectAttribute
ObjectAttributeService
ObjectListComponent	Class used to display different node shapes.
ObjectListParameter
ObjectParameter	Parameter that contains an Object value.
ObjectRef
ObservableShape
OHLCDataItem	Represents a single (open-high-low-close) data item in an OHLCDataset.
OHLCDataset	A simple implementation of the HighLowDataset interface.
OpacityAnimation
OpenExcelFileDialogService
OpenFileAction
OpenFileDialogService
OpenMageFileDialogService
OptAdjListGraph	Implements the Graph-interface using an adjacency list representation of the graph.
OptionGroup	Represents an option pane group.
OptionPane	The interface all option panes must implement.
OptionsDialog	Represents the Preference Dialog that shows all the settings / preferences for Vanted
OptionSetter
OrganismEntry
OrganismInfo
OSXSupport	Handles Mac OS X specific stuff.
Outlier	Represents one outlier in the box and whisker plot.
OutlierList	A collection of outliers for a single entity in a box and whisker plot.
OutlierListCollection	A collection of outlier lists for a box and whisker plot.
OutlineColorAnimation
OutputSerializer	Interfaces a serializer, which is able to write a given graph in a special format to a given output stream.
OverlaidBarChartDemo	A simple demonstration application showing how to create a bar chart overlaid with a line chart.
OverlaidBarChartDemo2	Another demo of an overlaid bar chart.
OverlaidXYPlotDemo	A demonstration application showing a time series chart overlaid with a vertical XY bar chart.
OverlaidXYPlotDemo2	A demonstration application showing an overlaid XY plot with dual range axes.
OverLIBToolTipTagFragmentGenerator	Generates tooltips using the OverLIB library (http://www.bosrup.com/web/overlib/).
OverviewOptionPane	The overview pane for the options dialog.
PaintStatusSupport
Pair<T,V>	Encapsulates two values in a pair.
PajekClusterColor
PajekReader	edges in list form (not supported): vertices <# of vertices> 1 "x" 2 "y" 3 "z" arcslist 1 2 3 2 3 non-list form for edges: vertices <# of vertices> 1 "a" x y z 2 "b" x y 3 "c" edges 1 2 0.3 1 3 0.7 2 3 1.0 arcs 1 2 0.3 1 3 0.7 2 3 1.0
PajekReaderPlugin	DOCUMENT ME!
PajekWriter
PaletteChooserPanel	A component for choosing a palette from a list of available palettes.
PaletteSample	A panel that displays a palette sample.
PanScrollZoomDemo	A demo for panning, scrolling and zooming.
PaperShape
PaperShapeBottomLeft
PaperShapeBottomRight
PaperShapeLeftBottom
PaperShapeLeftTop
PaperShapeRightBottom
PaperShapeRightTop
PaperShapeTopLeft
PaperShapeTopRight
Parameter	Interface for a parameter used by an Algorithm.
ParameterDialog	ParameterDialog provides an interface for dialogs displaying name-value pairs where the value can be edited.
ParameterEditPanel	Represents a parameter edit panel.
Parameterizable	Implementing classes provide and can accept different Parameters.
ParameterList	A ParameterList can be used to create enumeration type parameters, by grouping them into a list.
ParameterOptionPane
ParameterOutOfBoundsException	This exception is thrown if anyone tries to assign an invalid value to a LimitableParameter.
ParetoChartDemo	A demo showing the creation of a pareto chart.
parser	CUP v0.10k generated parser.
Parser
ParserException	ParserException will be thrown whenever an error occurs while reading in a graph.
PasswordDialog
PasteAction	Represents a graph element paste action.
PatchedHTMLEditorKit
PatchedHTMLEditorKit.LinkController
PathComparisonResult
Pathway
PathWayHandler
PathWayHandler
PathwayKeggLoading
PathwayLinkVisualizationComponent
PathWayLoaderLvL2	This Class sets the related pathway information to each node of the graph
PathWayLoaderLvL3	This Class sets the related pathway information to each node of the graph
PathwayReferenceAlgorithm
PathwayReferenceAutoCreationAlgorithm
PathwayWebLinkItem
PathwayWebLinkTab
PathwayWebLinkTreeNode
PatternAttributeUtils	Utilities for the handling the attributes on graphs, nodes, and edges and the corresponding definition of the strings.
PatternGraffitiHelper
PatternSpringembedder	Spring Embedder Algorithm.
PatternSpringembedder	Spring Embedder Algorithm.
PatternSpringembedder3d	Spring Embedder Algorithm.
PatternTabsForClusterAnalysis
PatternTabsForInspector	DOCUMENT ME!
PatternVistorLayouter
PDFAlgorithm	The print algorithm.
PDFSVGAlgorithm
Performance	A basic performance test for a couple of common operations.
Performance2	A basic performance test for a couple of common operations.
PerformanceTest
PertubationShape
PFS
PieChart3DDemo1	A simple demonstration application showing how to create a pie chart using data from a DefaultPieDataset.
PieChart3DDemo2	A rotating 3D pie chart.
PieChart3DDemo3	A pie chart with no labels.
PieChart3DDemo4	A pie chart with a custom label generator.
PieChartDemo1	A simple demonstration application showing how to create a pie chart using data from a DefaultPieDataset.
PieChartDemo2	A simple demonstration application showing how to create a pie chart using data from a DefaultPieDataset.
PieChartDemo3	A pie chart with no data, to demonstrate the use of the setNoDataMessage(...) method.
PieChartDemo4	A simple demonstration application showing how to create a pie chart using data from a DefaultPieDataset.
PieChartDemo5	A pie chart with no section labels.
PieChartDemo6	A pie chart with a custom label generator.
PieChartDemo7	A demo showing four pie charts.
PieDataset	A general purpose dataset where values are associated with keys.
PieDatasetHandler	A SAX handler for reading a PieDataset from an XML file.
PieLabelDistributor	This class distributes the section labels for one side of a pie chart so that they do not overlap.
PieLabelRecord	A structure that retains information about the label for a section in a pie chart.
PiePlot	A plot that displays data in the form of a pie chart, using data from any class that implements the PieDataset interface.
PiePlot3D	A plot that displays data in the form of a 3D pie chart, using data from any class that implements the PieDataset interface.
PiePlotState	A renderer state.
PieSectionEntity	A chart entity that represents one section within a pie plot.
PieSectionLabelGenerator	Interface for a label generator for plots that use data from a PieDataset.
PieToolTipGenerator	A tool tip generator that is used by the PiePlot class.
PieURLGenerator	Interface for a URL generator for plots that use data from a PieDataset.
PinNeedle	A needle that is drawn as a pin shape.
Placement
Placer	Deconstructs coarsening levels.
Plot	The base class for all plots in JFreeChart.
PlotChangeEvent	An event that can be forwarded to any PlotChangeListener to signal a change to a plot.
PlotChangeListener	The interface that must be supported by classes that wish to receive notification of changes to a plot.
PlotOrientation	Used to indicate the orientation (horizontal or vertical) of a 2D plot.
PlotOrientationDemo	A demo showing eight plots with various inverted axis and plot orientation combinations.
PlotOrientationDemo2	A demo showing eight plots with various inverted axis and plot orientation combinations.
PlotPropertyEditPanel	A panel for editing the properties of a Plot.
PlotRenderingInfo	Stores information about the dimensions of a plot and its subplots.
PlotState	Records information about the state of a plot during the drawing process.
PluginAlreadyLoadedException
PluginCopyPatternLayout
PluginDependency	Models a dependency to another plugin.
PluginDescription	Contains a meta data of a plugin.
PluginDescriptionCollector	Collects plugin description URLs, which can be used by the PluginSelector.
PluginEntry	An entry in the plugin manager.
PluginFeatureClusterCommands
PluginFeatureDataMapping
PluginFeatureExtendedFileFormatSupport
PluginFeatureHierarchyCommands
PluginFeatureMacroRecording
PluginFeatureMetaCropAccess
PluginFeatureNetworkAnalysisCommands
PluginFeatureStatistics
PluginFileFilter	Represents a file filter for graffiti plugins.
PluginHelper
PluginInfoHelper
PluginInfoMenu	This is a simple example for a gui component plugin for Graffiti.
PluginInfoMenu	Deprecated. since 2.6.5
PluginManager	Defines an interface for a plugin manager handeling the list of plugins.
PluginManagerDialog	DOCUMENT ME!
PluginManagerEditAction	Called, if the plugin manager dialog should be shown.
PluginManagerException	PluginManagerException is thrown, iff an error occured during the loading of a plugin.
PluginManagerListener	Represents a listener, which is called, if a plugin has been added to the plugin manager.
PluginPanel	The panel to which plugins can add bigger view-like components.
PluginPatternSpringembedder
PluginPatternSpringembedderNoCache
PluginSelector	Represents a plugin selector.
PluginStatusInfo
PluginXMLParser	The XML parser for the plugin descriptions.
PluginXMLParserErrorHandler	An error handler class for the plugin xml parser.
PlumNeedle	A needle for use with the CompassPlot class.
PngJpegAlgorithm
PngJpegAlgorithmParams
PNode<S extends Comparable<?>>
PNTReader
PNTSerializer
PNTSerializerPlugin
Point2Dfix
Point2DTimePoint
PointerNeedle	A needle in the shape of a pointer, for use with the CompassPlot class.
PointPair	DOCUMENT ME!
PolarChartDemo	PolarChartDemo demonstrates the capabilities of the PolarPlot.
PolarChartPanel	PolarChartPanel is the top level object for using the PolarPlot.
PolarItemRenderer	The interface for a renderer that can be used by the PolarPlot class.
PolarPlot	Plots data that is in (theta, radius) pairs where theta equal to zero is due north and and increases clockwise.
PolygonalNodeShape	DOCUMENT ME!
PolyLineEdgeShape	Represents an edge with several segments separated by bends.
PopulationChartDemo	A population pyramid demo.
PopupAction	Represents an action, which is called, if there should be displayed a popup menu.
Port	A port comprises a name and a coordinate.
PortableUrlService	A service-class that increases portability of rich-attribute graph across platforms.
PortAttribute	Contains information about the port of a node
PortsAttribute	Contains ingoing, outgoing and common ports
Position2DAnimation	Animates the position of a Node object.
PositionAttribute	Contains properties of the attribute position for a label
PositionButton
PositionGridGenerator
PositionXAnimation	Animates the x coordinate of a Node object.
PositionYAnimation	Animates the y coordinate of a Node object.
PovrayWriter
PowerFunction2D	A function of the form y = a * x ^ b.
PPTAlgorithm	Provides a PPT writer.
PreconditionException	Throws in the context of precondition failures.
PreferenceManager
PreferencePanel
PreferencesDialog
PreferencesInterface	Classes that want to provide settings that will be stored in a settings file and that want to be user-configurable can implement this interface.
PreferencesUpdater	Updates any previously stored old links from preferences.
PrettyObject
PriceVolumeDemo	A demonstration application showing how to create a price-volume chart.
PrintAlgorithm	The print algorithm.
PrintEnvironment	Encapsulates the properties of the printing Environment, like Zoom, colored printing, ...
PrintPlugin	This plugin provides a print feature.
PrintTool
ProcessHierarchynodesDepOnLeafNodes
ProgressManager
ProgressStatusService
ProgressViewer	A class that displays in some sense progress made while a long running task.
ProjectEntity
ProvidesAccessToOtherAlgorithms
ProvidesAdditonalDrawingShapes
ProvidesDirectMouseClickContextMenu
ProvidesEdgeContextMenu	DOCUMENT ME!
ProvidesExplanation
ProvidesGeneralContextMenu	DOCUMENT ME!
ProvidesNodeContextMenu	DOCUMENT ME!
ProvidesRSSfeed	Deprecated.
ProvidesScenarioSupportCommand
ProvidesScenarioSupportCommands
ProvidesStringInitMethod
PruneTreeAlgorithm
PutIntoSidePanel
QPRectanglePlacement
QuadCurveEdgeShape	DOCUMENT ME!
QuadNumber
Quadrant
Quarter	Defines a quarter (in a given year).
Queue	A simple queue.
RadialTreeLayout	An implementation of a radial tree layout algorithm.
RadialTreeLayoutPlugin	Plugin for a radial tree layouter algorithm
RainbowPalette	Contains the data to constuct an 8-bit rainbow palette This come from an old application which ran on 8-bit graphics device.
RandomLayouterAlgorithm	This algorithm performs a random placement of the nodes on the visible area.
RandomLayouterPlugin	Plugin container for the RandomLayouterAlgorithm.
RandomMerger	Merger that randomly merges edges.
RandomPlacer	Implementation of the Placer Interface that reduces Coarsening Levels by randomly placing the inner nodes randomly around their MergedNode
Range	Represents an immutable range of values.
RangeInfo	An interface (optional) that can be implemented by a dataset to assist in determining the minimum and maximum values.
RangeType	An enumeration of the 'range types' for a renderer.
RatioViewAlgorithm
RatioViewPlugin
Reaction
ReactionAndInfo
ReactionEntry
ReactionIdEditor
ReactionIDSpeciesIDWrapper
ReactionLabel
ReactionService
ReactionType
ReactionTypeSelection
ReceiveHighlightInfo
RecentEntry
ReceptorDownShape
ReceptorLeftShape
ReceptorRightShape
ReceptorUpShape
ReColorBars
RecolorEdgesAlgorithm
RecreateView
RectangleDrawerFrame
RectangleDrawerPanel
RectangleNodeShape	Class representing a rectangle.
RectanglePlacement
RectangularNodeShape	An implementation of NodeShape representing rectangular shapes.
RedrawViewAction	The action for a new graph.
RedundantMultipleIterator	Deprecated.
ReferencesPlugin
Regression	A utility class for fitting regression curves to data.
RegularTimePeriod	An abstract class representing a unit of time.
Relation
RelationLabel
RelationType
RelationTypeEditor
RelativePolyShape
Release
ReleaseInfo
RemoveBendsAlgorithm
RemoveHiddenLabelsAlgorithm
RemoveMappingDataAlgorithm
RemoveParallelEdges	The following algorithm deletes additional parallel edges, leaving only a single edge.
RemoveParenthesisLabels
RemoveSelectedNodesPreserveEdgesAlgorithm	Labels all selected nodes with unique numbers.
RendererChangeEvent	An event that can be forwarded to any RendererChangeListener to signal a change to a plot.
RendererChangeListener	The interface that must be supported by classes that wish to receive notification of changes to a renderer.
RendererState	Represents the current state of a renderer.
ReplaceDiagramTitleFromAlternativeSubstanceNames
ReplaceLabelAlgorithm
ReplaceLabelFromAlternativeSubstanceNames
ReplaceLabelPlugin
ReplicateDouble
ResetEdgeSourceOrTarget
ResizeAndGridLayoutPlugin	Plugin for Gridlayouter algorithm
ResizeFromMappingCountLayoutAlgorithm
ResizeNodesDepDegreeAlgorithm
ResourceIOConfigObject
ResourceIOHandler
ResourceIOManager
RestApiBiomodels	API for establishing a connection to the Biomodels database with the functionality of retrieving Simple Models and SBML Models.
RestoreLabelAlgorithm
RestService	Klasse zum Auslesen von Rest-Resourcen.
ResultPair
RightSkewedRectShape
RimasTab
RootHandler	A SAX handler that delegates work to sub-handlers.
RotateAlgorithm
RotatePlugin
RoundGradientContext
RouterWithProgress
RSSfeedDefinition
RSSFeedManager
RTTreeLayout	An implementation of a tree layout algorithm.
RTTreeLayoutPlugin	Plugin for a tree layouter algorithm
RubyScriptMenuEntry	This class provides the menu entries for the jRuby-Script Menu Items.
Rule
RunAlgorithm	Runs an algorithm.
RunAlgorithmDialog
RunnableForFile
RunnableWithMappingData
RunnableWithXMLexperimentData
Sample
SampleAverage
SampleAverageInterface
SampleEntry
SampleInterface
SampleSignalDataset	A sample signal dataset.
SampleXYDataset	A dummy dataset for an XY plot.
SampleXYDataset2	Random data for a scatter plot demo.
SampleXYDatasetThread	Implements the runnable interface and updates the SampleXYDataset.
SampleXYSymbolicDataset	Random data for a symbolic plot demo.
SampleXYZDataset	A quick-and-dirty implementation of the interface.
SampleYSymbolicDataset	A dataset implementation that provides random data for a symbolic plot demo.
SBGNCircleShape
SBGNDissociationShape
SBGNMultiStadiumShape
SBGNProcessShape
SBGNStadiumShape
SBML_Compartment_Reader
SBML_Compartment_Writer
SBML_Constants
SBML_Constraint_Reader
SBML_Constraint_Writer
SBML_Event_Reader
SBML_Event_Writer
SBML_FunctionDefinition_Reader
SBML_FunctionDefinition_Writer
SBML_InitialAssignment_Reader
SBML_InitialAssignment_Writer
SBML_Logger	Special logging wrapper or SBML errors currently mutes the errors thrown by the SBML Reader Later it'll be integrated in the new notification-framework
SBML_Model_Reader
SBML_Model_Writer
SBML_Parameter_Reader
SBML_Parameter_Writer
SBML_Reaction_Reader
SBML_Reaction_Writer
SBML_Rule_Reader
SBML_Rule_Writer
SBML_SBase_Reader
SBML_SBase_Writer
SBML_SBML_Reader
SBML_SBML_Writer
SBML_Species_Reader
SBML_Species_Writer
SBML_UnitDefinition_Reader
SBML_UnitDefinition_Writer
SBML_XML_Reader
SBML_XML_ReaderPlugin	DOCUMENT ME!
SBML_XML_ReaderWriterPlugin	Importer and Exporter of SBML format Add-on.
SBML_XML_Writer
SBML_XML_WriterPlugin	DOCUMENT ME!
SBMLAlgebraicRule
SBMLAssignmentRule
SBMLCompartment
SBMLCompartmentHelper
SBMLConstraint
SBMLConstraintHelper
SBMLEventAssignmentHelper
SBMLEventHelper
SBMLFunctionDefinition
SBMLFunctionDefinitionHelper
SBMLHelper
SBMLInitialAssignment
SBMLInitialAssignmentHelper
SBMLLocalParameter
SBMLNodesNiceIdHelper
SBMLParameter
SBMLParameterHelper
SBMLRateRule
SBMLReaction
SBMLReactionHelper
SBMLRuleHelper
SBMLSpeciesHelper
SBMLUnit
SBMLUnitDefinition
SBMLUnitDefinitionHelper
ScaledFontUIResource	Customized FontUIResource class.
ScaledIcon	Given a regular Icon this would produce a scaled clone of it.
Scaler	All scalers should implement this interface.
ScalerLoader	A 'static' Loader for scaling effects to take place.
ScalingCoordinator	It coordinates the scaling among the possible L&Fs and initiates Components- scaling.
ScalingSlider	The front-end of the provided scalers.
ScanForAddonUpdates
ScanForUpdate	Update file has very simple format: For the message string..
ScanListPriorityQueue<T extends Comparable<T>>
ScatterPlotDemo	A demo scatter plot.
ScatterPlotDemo2	A demo scatter plot.
ScatterPlotDemo3	A demo scatter plot with some code showing how to convert between Java2D coordinates and (x, y) coordinates.
ScatterPlotDemo4	A demo scatter plot showing the use of the XYDotRenderer class.
Scenario
ScenarioGui
ScenarioService
ScenarioServiceHandlesStoredParametersOption
ScenarioServiceIgnoreAlgorithm
SearchAlgorithms
SearchAlgorithms.LogicalOp
SearchAlgorithms.OperatorOnCategories
SearchAndSelecAlgorithm	Labels all selected nodes with unique numbers.
SearchAttributeHelper
SearchDialog
SearchFilter
SearchLogic
SearchOperation
SearchOption
SearchOptionEditorGUI
SearchType
Second	A simple demo.
Second	Represents a second in a particular day.
SecondaryDatasetDemo2	A demo showing the addition and removal of secondary datasets / renderers.
SegmentedHighLowChartDemo	A demo showing a daily and intraday segmented high-low-open-close charts.
SegmentedTimeline	A Timeline that implements a "segmented" timeline with included, excluded and exception segments.
SelectAlgorithm	Deprecated.
SelectAllAction	Represents a "select all graph elements" action.
SelectClusterAlgorithm
SelectCompoundsAlgorithm
SelectEdgesAlgorithm
SelectEnzymesAlgorithm
SelectGenesAlgorithm
Selection	Contains selected nodes and edges.
SelectionAction	Represents an action, which depends on a selection.
SelectionAdapter	Adapter for the SelectionListener interface, providing default empty implementation.
SelectionChangeAction	DOCUMENT ME!
SelectionEvent	DOCUMENT ME!
SelectionListener	Interfaces a listener, which wants to be informed about a change in the selection model.
SelectionMenu	A menu providing entries to manage selections.
SelectionModel	Contains a list of selections and a reference to the current selection.
SelectionParameter	This class contains a single Node.
SelectionRectangle
SelectionSaveAction	Saves a selection as long as the session lives under some name.
SelectLeafNodesAlgorithm
SelectMapNodesAlgorithm
SelectMapTitleNodesAlgorithm
SelectNodesComponent
SelectNodesWithExperimentalDataAlgorithm
SelectReactionsAlgorithm
SelectResultsVisitor
SelectWindowsAlgorithm
SerializationTest1	Based on the DynamicDataDemo class, this demo serializes and deserializes the chart before displaying it - the idea is that this confirms that the serialization process returns a working chart.
Serializer	Defines a generic serializer which provides a set of extensions.
Series	Base class representing a data series.
SeriesChangeEvent	An event with details of a change to a series.
SeriesChangeListener	Methods for receiving notification of changes to a data series.
SeriesDataset	The interface for a dataset consisting of one or many series of data.
SeriesException	A general purpose exception class for data series.
SeriesShapeFactory	Deprecated. No longer used.
Session	Contains a session.
SessionAdapter	Adapter for the SessionListener interface, providing default empty implementation.
SessionAdapterExt	Adapter for the SessionListenerExt interface, providing default empty implementation.
SessionLinkInfo
SessionListener	Interface for all who want to be noticed when the session changes.
SessionListenerExt
SessionManager	Manages the session objects.
SetAbleBoolean
SetBackgroundColorAlgorithm	DOCUMENT ME!
SetBackgroundColorPlugin
SetClusterInfoAlgorithm
SetClusterInfoFromLabelAlgorithm
SetClusterInfoFromSubgraphAlgorithm
SetClusterLaunchGui
SetJavaMemoryMacOS	This class will take care of setting the available memory for Vanted by manipulating the Pinfo.list file found in the app bundle of Mac application distributions.
SetLabelModeOfOperation
SetNumericAttributeFromDataAlgorithm
SettingsHelperDefaultIsFalse
SettingsHelperDefaultIsTrue
SetToolTipAlgorithm
SetURLAlgorithm
ShapeDescriptionAttribute
ShapeFactory	Deprecated. This interface is no longer used, shapes are obtained from the DrawingSupplier.
ShapeNotFoundException	DOCUMENT ME!
SheetHandler	See org.xml.sax.helpers.DefaultHandler javadocs
ShipNeedle	A needle in the shape of a ship, for use with the CompassPlot class.
ShortAttribute	Contains a short
ShortcutsOptionPane	An option pane for shortcuts.
ShortEditComponent	Represents a gui component, which handles short values.
ShortestPathSelectionAlgorithm
ShowClusterGraphAlgorithm
ShowImage
ShowLayoutTab
ShowOrHideImageAttributesAlgorithm
ShowPreferencesAction
ShowStatisticsTab
SIFreader	edges in list form S I T (Source Interaction Type Target) ===== n1 i1 n2 n2 i1 n3 n3 i2 n1
SIFWriter
SigmoidInterpolator
SignalRenderer	A renderer that draws signals on an XYPlot.
SignalsDataset	An interface that adds signal information to an XYDataset.
SimpleFormatter	Provides a brief summary of the LogRecord in a human readable format.
SimpleIntervalXYDataset	A quick and dirty sample dataset.
SimpleIntervalXYDataset2	A quick and dirty sample dataset.
SimpleLabelComponent	This component represents a label for a node or an edge.
SimpleModel	Simple Model of a model from the Biomodels database, used to collect important meta-data for later use.
SimpleTimePeriod	An arbitrary period of time, measured to millisecond precision using java.util.Date.
SineInterpolator
SingleFiledLayout	SingleFiledLayout lays out components singled filed.
SingleGraphElementEditComponent	This class provides an edit component for graph elements.
SingleParameter	Tagging interface for Parameters that can be used in a ParameterList.
SizeAnimation	Animates the size of a Node object.
SizeSetting
SizeSettingDPIunit
SizeSettingZoom
SliderComponent
SliderOptions
SliderParameter
SlowPriorityQueue<T extends Comparable<T>>
SmallNumberDemo	A demo showing the use of very small numbers in a dataset.
SmoothCubicInterpolator	Uses the same mathematical equation as a CubicInterpolator but with different constants.
SmoothLineEdgeShape	A class that represents line shapes that are "smooth" in the sense GML uses it.
SolarMerger	Implements the Solar Merger as described by Jürgen Hachul (but without the target edge length calculation.)
SolarPlacer	Corresponding placer to the SolarMerger.
SOM_ColorReduce
SOManalysis
SOMclusterAnalysis
SOMclusterAnalysisDoCluster
SOMdataEntry
SOMguiHelper
SOMplugin
SOMprintDataset
SOMservice
SortedCollectionAttribute	Empty interface.
SortIntoCluster	Sorts graph elements into cluster.
SortJTree
SourceDockingAttribute
SourceSinkShape
SpecialTableValue
SpinnerEditComponent	An EditComponent, displaying values in a JSpinner-manner.
SplashScreen	A frame that is displayed while Graffiti is loading.
SplashScreenInterface
SplitNodeForSingleMappingData
SplitResult
SpringEmbedderAlgorithm
SpringEmbedderPlugin
SqlMeasurementData
SqlSampleAverageData
SqlSampleIdTimeUnitInfo
SrcTargetEditor
StackedAreaChartDemo	A simple demonstration application showing how to create a stacked area chart using data from a CategoryDataset.
StackedAreaRenderer	A renderer that draws stacked area charts for a CategoryPlot.
StackedAreaXYRenderer	Deprecated. Renamed StackedXYAreaRenderer.
StackedBarChart3DDemo	A simple demonstration application showing how to create a stacked 3D bar chart using data from a CategoryDataset.
StackedBarChartDemo1	A simple demonstration application showing how to create a stacked bar chart using data from a CategoryDataset.
StackedBarChartDemo2	A simple demonstration application showing how to create a stacked bar chart using data from a CategoryDataset.
StackedBarChartDemo3	A simple demonstration application showing how to create a stacked bar chart using data from a CategoryDataset.
StackedBarChartDemo4	A simple demonstration application showing how to create a stacked bar chart using data from a CategoryDataset.
StackedBarRenderer	A stacked bar renderer for use with the CategoryPlot class.
StackedBarRenderer3D	Renders stacked bars with 3D-effect, for use with the CategoryPlot class.
StackedXYAreaChartDemo	A simple demonstration application showing how to create a stacked XY area chart.
StackedXYAreaChartDemo2	This demo shows the creation of a stacked XY area chart.
StackedXYAreaRenderer	A stacked area renderer for the XYPlot class.
StackedXYAreaRenderer2	A stacked area renderer for the XYPlot class.
StackedXYBarRenderer	A bar renderer that displays the series items stacked.
StandardArrowShape	DOCUMENT ME!
StandardArrowShapeLeft	DOCUMENT ME!
StandardArrowShapeRight	DOCUMENT ME!
StandardAttributeComponents	This plugin contains the standard attribute-attributeComponent mappings.
StandardCategoryLabelGenerator	A standard label generator that can be used with a CategoryItemRenderer.
StandardCategoryToolTipGenerator	A standard tool tip generator that can be used with a CategoryItemRenderer.
StandardCategoryURLGenerator	A URL generator that can be assigned to a CategoryItemRenderer.
StandardContourToolTipGenerator	A standard tooltip generator for plots that use data from an ContourDataset.
StandardEntityCollection	A standard implementation of the EntityCollection interface.
StandardLegend	A chart legend shows the names and visual representations of the series that are plotted in a chart.
StandardLegendItemLayout	A class for arranging legend items.
StandardLooper
StandardPieItemLabelGenerator	A standard item label generator for plots that use data from a PieDataset.
StandardPieURLGenerator	A URL generator for pie charts.
StandardTickUnitSource	A source that can used by the NumberAxis class to obtain a suitable TickUnit.
StandardTools	This plugin contains the standard editing tools.
StandardToolTipTagFragmentGenerator	Generates tooltips using the HTML title attribute for image map area tags.
StandardURLTagFragmentGenerator	Generates URLs using the HTML href attribute for image map area tags.
StandardValueEditComponent	DOCUMENT ME!
StandardXYItemRenderer	Standard item renderer for an XYPlot.
StandardXYLabelGenerator	A standard label generator for plots that use data from an XYDataset.
StandardXYToolTipGenerator	A standard tool tip generator for use with an XYItemRenderer.
StandardXYURLGenerator	A URL generator.
StandardXYZToolTipGenerator	A standard item label generator for use with XYZDataset data.
StandardXYZURLGenerator	A URL generator.
Star
StartBenchmarks	Run some benchmarks for the MLF in VANTED.
StartLayoutAlgorithm
StartLayoutPlugin
StartVantedWithAddon	Starts VANTED with the MLF add-on.
StartVantedWithStressMinAddon	Helper method for starting vanted with the stress minimization addon.
StatefulAccumulator<T,O>	An object that holds an accumulating value of type T and is able to accept parameters of type O and (potentially) aggregate them into a value of type T.
StatisticalBarChartDemo	Demonstration of the statistical bar graph.
StatisticalBarRenderer	A renderer that handles the drawing a bar plot where each bar has a mean value and a standard deviation line.
StatisticalCategoryDataset	A category dataset that defines a median and standard deviation value for each item.
Statistics	A utility class that provides some simple statistical functions.
StatisticTable
StatusBar	Represents a status line ui component, which can display info and error messages.
StoichiometryWriter	writes on one edge a Stochiometry and reads it again
StoichiometryWriter	writes on one edge a Stochiometry and reads it again
StraightLineEdgeShape	Concrete class representing an edge as one straight line.
StressMinimizationImplementation
StressMinimizationLayout	Layout algorithm performing a stress minimization layout process.
StressMinimizationPlugin	Since 2.8.0 the Stress Minimization add-on is integrated into the core of Vanted as Vanted plug-in.
StressMinParamModel	This class represents the GUI and at the same time the "model" of the algorithm settings/options/parameters.
StressMinParamModel.InitialLayoutOption
StressMinParamModel.MethodOption
StringAttribute	Contains a String.
StringBundle	The localized resource for the the labels used in the whole system as for label, buttons etc.
StringEditComponent	StringEditComponent provides an edit component for editing strings.
StringManipulationTools
StringParameter	Parameter that contains an Integer value.
StringScanner
StringSplitter	Provides a method to split a String into several Strings according to a certain String.
StringTimePoint
SubCategoryAxis	A specialised category axis that can display sub-categories.
SubComponentNameCheckBox
SubComponentTypesEditor
SubSeriesDataset	This class will create a dataset with one or more series from another SeriesDataset.
Substance
SubstanceColumnInformation
SubstanceInterface
SubstanceRatioCalculationAlgorithm
SubtabHostTab
Subtype
SubtypeCompoundEditor
SubtypeName
SubtypeValue
SupportsHollowDrawing
SupportsWriterOutput
SuppressSaveActionsView
SurveyResultsDemo	A horizontal bar chart showing survey results.
SurveyResultsDemo2	A vertical bar chart.
SurveyResultsDemo3	A chart showing...
SVGAlgorithm	The print algorithm.
SVGPlugin	This plugin provides a print feature.
SwingLooper	Reverses the animation after it goes forward.
SwitchSelectionsPlugin	Provides a spring embedder algorithm a la KK.
sym	CUP generated class containing symbol constants.
SymbolicAxis	A standard linear value axis, for SYMBOLIC values.
SymbolicChartDemo1	An example of...
SymbolicTickUnit	A symbolic tick unit.
SymbolicXYItemLabelGenerator	A standard item label generator for plots that use data from an XYDataset.
SymbolicXYPlotDemo	A demonstration application for the symbolic XY plots.
SymbolicYPlotDemo	A demonstration application for the symbolic axis plots.
SystemAnalysis
SystemInfo
TabAglet	Represents the tab, which contains the functionality to edit the attributes of the current graph object.
TabBiomodels
TabDBE
TabExampleFiles
TabKegg
TableData
TableDataTest	Insert the type's description here.
TableLayout	TableLayout is a layout manager that arranges components in rows and columns like a spreadsheet.
TableLayoutConstants	Constants used by TableLayout.
TableLayoutConstraints	The following inner class is used to bind components to their constraints.
TableXYDataset	A dataset containing one or more data series containing (x, y) data items, where all series in the dataset share the same set of x-values.
TabMetaCrop
TabNetworkAlgorithms
TabPatternLayout	Represents the tab, which contains the functionality to edit the attributes of the current graph object.
TabPluginControl	Represents the tab, which contains the functionality to edit the attributes of the current graph object.
TabStatistics
TabVisualisationControl	Deprecated. Do not use, will be removed in future.
TagDownShape
TagLeftShape
TagRightShape
TagUpShape
TargetDockingAttribute
TargetYandNewNodeResult
Task	A simple representation of a task.
TaskSeries	A series that contains zero, one or many Task objects.
TaskSeriesCollection	A collection of TaskSeries objects.
TeeStream
Template
TemplateFile
TemplateFileManager
TemplateLoader
TemplateLoaderInstance
TemplateLoaderInterface
TemplateManager
Test	Insert the type's description here.
TestImageExport
Testttt
TestValueRequired	Use this annotation to ensure that value used by the random property setter is different from NULL.
TextAnnotation	A base class for text annotations.
TextAreaEditComponent	DOCUMENT ME!
TextFile
TextFileColumnInformation
TextListReader	edges in list form S T W (header) a b 0.3 c b 0.7 % comment a c 1.0 or simple text format (see http://www.graphdrawing.de/contest2009/gdcategories2009.html): # Nodes Id1,40,40,20,20 Id2,40,40,100,100 Id3,40,40 # Edges Id1,Id2,40,20,100,20,100,80 Id3,Id2
TextListReaderPlugin
TextTitle	A chart title that displays a text string.
ThermometerDemo	A demonstration application for the thermometer plot.
ThermometerDemo2	A simple demonstration application showing how to create a thermometer.
ThermometerPlot	A plot that displays a single value (from a ValueDataset) in a thermometer type display.
ThicknessAttribute
ThicknessAttributeEditor
ThicknessAttributeEditor.ArrowHeadModes
ThreadSafeAlgorithm	DOCUMENT ME!
ThreadSafeOptions	This class can be used for thread safe communication between user interfaces and plugins.
Tick	Represents the dimensions of a tick on an axis (used during the process of drawing a chart, but not retained).
TickLabelEntity	A chart entity representing a tick label.
TickUnit	Base class representing a tick unit.
TickUnits	A collection of tick units.
TickUnitSource	An interface used by the DateAxis and NumberAxis classes to obtain a suitable TickUnit.
Tie
TimeAndPlantName
TimeAndTimeUnit
Timeline	An interface that defines the contract for a Timeline.
TimePeriod	A period of time measured to millisecond precision using java.util.Date.
TimePeriodAnchor	Used to indicate one of three positions in a time period: START, MIDDLE and END.
TimePeriodFormatException	An exception that indicates an invalid format in a string representing a time period.
TimePeriodValue	Represents a time period and an associated value.
TimePeriodValues	A structure containing zero, one or many TimePeriodValue instances.
TimePeriodValuesCollection	A collection of TimePeriodValues objects.
TimePeriodValuesDemo	An example of....
TimePeriodValuesDemo2	An example of....
TimePeriodValuesDemo3	This demo shows a bar chart with time based data where the time periods are slightly irregular.
TimePoint<T>
TimeSeries	Represents a sequence of zero or more data items in the form (period, value).
TimeSeriesCollection	A collection of time series objects.
TimeSeriesDataItem	Represents one data item in a time series.
TimeSeriesDemo	An example of a time series chart.
TimeSeriesDemo10	A demo showing a time series with per minute data.
TimeSeriesDemo11	An example of....
TimeSeriesDemo12	A demo.
TimeSeriesDemo13	This demo shows two charts that use weekly data.
TimeSeriesDemo2	A demo showing a time series (quarterly data) with a null value.
TimeSeriesDemo3	A time series demo, with monthly data, where the tick unit on the axis is set to one month also (this switches off the auto tick unit selection, and *can* result in overlapping labels).
TimeSeriesDemo4	An example of a time series chart using hourly data and including a null value.
TimeSeriesDemo5	A time series chart with 4000 data points, to get an idea of how JFreeChart performs with a larger dataset.
TimeSeriesDemo6	A time series chart with all zero data.
TimeSeriesDemo7	A time series chart.
TimeSeriesDemo8	A time series chart.
TimeSeriesDemo9	An example of a time series chart.
TimeSeriesTableModel	Wrapper around a time series to convert it to a table model for use in a JTable.
TimeSeriesURLGenerator	A URL generator.
TimeTableXYDataset	A dataset for regular time periods that implements the TableXYDataset interface.
Title	The base class for all chart titles.
TitleChangeEvent	A change event that encapsulates information about a change to a chart title.
TitleChangeListener	The interface that must be supported by classes that wish to receive notification of changes to a chart title.
TitlePropertyEditPanel	A panel for editing the properties of a chart title.
Tool	A Tool executes a specified action on a ConstrainedGraph.
ToolBarLayout	An extension of FlowLayout that correctly calculates the height of a toolbar panel.
ToolBarOptionPane	A tool bar editor.
Toolbox	An utility class holding some handy methods for tweaking the scaling of some components, where necessary.
ToolButton	DOCUMENT ME!
ToolManager	An interface for managing a list of tools.
Tools
ToolTipHelper
ToolTipTagFragmentGenerator	Interface for generating the tooltip fragment of an HTML image map area tag.
TransactionAdapter	Adapter for the TransactionListener interface, providing default empty implementation.
TransactionEvent	Contains a transaction event.
TransactionHashMap
TransactionListener	Interface, that contains methods which are called when transactions are started or finished.
TransferableObject	At last an easy way to encapsulate your custom objects for dragging and dropping in your Java programs! When you need to create a Transferable object, use this class to wrap your object.
TransferableObject.Fetcher	Instead of passing your data directly to the TransferableObject constructor, you may want to know exactly when your data was received in case you need to remove it from its source (or do anyting else to it).
TransitionShape
TranspathEntity
TranspathEntityType
TranspathGene
TranspathMolecule
TranspathPathway
TranspathPathwayLoader
TranspathReaction
TranspathReference
TranspathService
TranspathXMLparser
TreeAttributSearcher	enumerates the attributes of the given node / attributable in a path --> attribute map
TreeContainer	Contains additional informations about each tree in the forest.
TreeTableModel	TreeTableModel is the model used by a JTreeTable.
TreeTableModelAdapter	This is a wrapper class takes a TreeTableModel and implements the table model interface.
TriggerArrowShape	DOCUMENT ME!
TristateCheckBox	Maintenance tip - There were some tricks to getting this code working: 1.
TristateCheckBox.State	This is a type-safe enumerated type
TruncProteinShape
TtestInfo
TypedAttributeService
UbioChemicalReaction
UBioChemicalReaction
Ucatalysis
UCatalysis
Ucomplex
UComplex
UcomplexAssembly
UComplexAssembly
Ucontrol
UControl
Uconversion
UConversion
UDegradation
Udna
UDna
UDnaRegion
UDPreceiveStructure
UGene
UGeneticInteraction
UllmannSubraphIsomAdjMatrixState
Umodulation
UModulation
UMolecularInteraction
UNCFileLocationCheck
Undoable	This interface should be implemented by all classes that provide UndoableEdits for their actions.
UnificationException	Thrown in the context of unification failures (e.g.: during the merge of two collection attributes in an addAttributeConsumer call).
UnresolvableDependenyException	An UnresolvableDependencyException will be thrown whever there is a dependency of a plugin to another which cannot be resolved.
UnsatisfiedConstraintException	An UnsatisfiedConstraintException is thrown when a constraint to a graph is not satisfied.
Upathway
UPathway
UpdateInfoResult
UpdateMessageDialog
UphysicalEntity
UPhysicalEntity
UphysicalInteraction
Uprotein
UProtein
Url
URLAttribute
URLattributeAction
URLattributeActionManager
URLattributeContextMenuCommandPlugin
URLAttributeEditor
URLAttributePlugin
URLTagFragmentGenerator	Interface for generating the URL fragment of an HTML image map area tag.
Urna
URna
URnaRegion
UserMappingAlgorithm
UsmallMolecule
USmallMolecule
UTemplateReaction
UTemplateReactionRegulation
UtilityClassSelectorFromGraph	this class and its static method transforms a attributes on a node to an biopax element
UtilityClassSelectorToGraph	this class and its static method transforms a biopax element to a node in a graph
UtilityClassSelectorToGraph	this class and its static method transforms a biopax element to a node in a graph
UtilitySuperClassFromGraph	this class's functions gets all available attributes and helps to write them into an owl model
UtilitySuperClassToGraph	this class's functions sets attributes to each node
UtilitySuperClassToGraph	this class's functions sets attributes to each node
Utransport
UTransport
UtransportWithBiochemicalReaction
UTransportWithBiochemicalReaction
Value	A general purpose interface for accessing a value.
ValueAndGraphElement
ValueAxis	The base class for axes that display value data, where values are measured using the double primitive.
ValueAxisPlot	An interface that is implemented by plots that use a ValueAxis, providing a standard method to find the current data range.
ValueDataset	An interface for a dataset that returns a single value.
ValueEditComponent	A generic extension of a javax.swing.JComponent which allows editing of Attributes.
ValueEditComponentAdapter	Provides an adapter class implementing all listener methods.
ValueEditContainer	ValueEditContainer is an interface for an arbitrary component containing a set of ValueEditComponents.
ValueHandler	A handler for reading a 'Value' element.
ValueMarker	A marker that represents a single fixed value.
Values	An interface through which (single-dimension) data values can be accessed.
Values2D	A general purpose interface that can be used to access a table of values.
ValueTick	A value tick.
VantedPreferences	Global Preference class for VANTED.
Variable
Variables
Vector2d
Vector2d
Vector2df
Vector3d
VectorTimePoint<T extends Number>
Version	Represents an object, which contains a version number.
View	Represents a view of a plugin.
View2D	A 2D view as a graphical representation for a graph.
View3D	DOCUMENT ME!
ViewLabel
ViewListener	Interface for all who want to be noticed when a different view becomes active.
ViewManager	Provides an interface for managing a list of view types.
ViewManager.ViewManagerListener	Interfaces a view manager listener.
ViewNewAction	The action for creating a new view.
ViewTypeChooser	DOCUMENT ME!
VisibilityAnimation	Animates the visibility of an Attributable object. BooleanTimePoint data values: True = Hidden False = Visible
VTextIcon	VTextIcon is an Icon implementation which draws a short string vertically.
WaferMapChartDemo	A simple demo showing a wafer map chart.
WaferMapDataset	A dataset that can be used with the WaferMapPlot class.
WaferMapPlot	A wafer map plot.
WaferMapRenderer	A renderer for wafer map plots.
WarningButton
WaterfallBarRenderer	A renderer that handles the drawing of waterfall bar charts, for use with the CategoryPlot class.
WaterfallChartDemo	A sample waterfall chart.
WaterfallChartDemo2	A sample waterfall chart.
WaterTemperatureDemo	This demo shows a plot of water temperature at various depths.
WattsStrogatzGraphGenerator	Algorithm for generation of a random small-world network.
WebDirectoryFileListAccess
WebsiteGeneration
Week	A calendar week.
WeightedDistanceInfo
WeightedShortestPathSelectionAlgorithm
WindChartDemo	A simple demonstration application showing how to create a wind chart.
WindDataset	Interface for a dataset that supplies wind intensity and direction values observed at various points in time.
WindItemRenderer	A specialised renderer for displaying wind intensity/direction data.
WindNeedle	A needle that indicates wind direction, for use with the CompassPlot class.
WindowScaler	Extension of ComponentScaler, responsible for Window-derived components' decorations scaling.
WindowSettings	DOCTODO: Include class header
WindowsScaler	Similar to the default scaler.
WorkflowHelper	Deprecated. Since 2.7.0, it contains outdated information and has been moved to vanted.org, where an updated version can be found at the tutorials section.
WorkSettings
WorkTask
XGMMLConstants	Defines constants used by XGMML parser.
XGMMLContentHandler	Custom XGMMLHandler for parsing an XGMML input source using SAX2.
XGMMLDelegatorHandler	Delegator handler.
XGMMLDTDResolver	Resolver for the XGMML DTD.
XGMMLHandler	Abstract Handler for parsing an XGMML input source using SAX2.
XGMMLReader	This class provides a reader for praphs stored in XGMML format.
XGMMLReaderPlugin	Plugin to provide a reader for praphs stored in XGMML format
XisSymbolic	Represent a data set where X is a symbolic values.
XlsTableModel
XMLAttribute
XMLAttributeEditor
XMLAttributePlugin
XMLBarChartDemo	A simple demonstration application showing how to create a bar chart using data from an XML data file.
XmlDataChartComponent
XMLdataTablePane
XMLHelper	Contains some (static) auxiliary methods for writing XML.
XMLPieChartDemo	A simple demonstration application showing how to create a pie chart from data in an XML file.
XPathHelper
XWGSerializer
XWGSerializerPlugin
XYAnnotation	The interface that must be supported by annotations that are to be added to an XYPlot.
XYAreaChartDemo	A simple demonstration application showing how to create an area chart.
XYAreaChartDemo2	A simple demonstration application showing how to create an area chart with a date axis for the domain values.
XYAreaChartTest	A simple demonstration application showing how to create an area chart.
XYAreaRenderer	Area item renderer for an XYPlot.
XYAreaRenderer2	Area item renderer for an XYPlot.
XYBarChartDemo	A simple demonstration application showing how to create a vertical bar chart.
XYBarChartDemo2	A simple demonstration application showing how to create a vertical bar chart.
XYBarChartDemo3	A simple demonstration application showing how to create a vertical bar chart.
XYBarChartDemo4	A demonstration of the XYBarDataset wrapper class.
XYBarDataset	A dataset wrapper class that converts a standard XYDataset into an IntervalXYDataset suitable for use in creating XY bar charts.
XYBarRenderer	A renderer that draws bars on an XYPlot (requires an IntervalXYDataset).
XYBoxAndWhiskerDemo	A demo showing a box and whisker chart.
XYBoxAndWhiskerRenderer	A renderer that draws box-and-whisker items on an XYPlot.
XYBubbleRenderer	A renderer that draws a circle at each data point.
XYDataItem	Represents one (x, y) data item for an XYSeries.
XYDataPair	Deprecated. Use XYDataItem.
XYDataset	An interface through which data in the form of (x, y) items can be accessed.
XYDatasetTableModel	A READ-ONLY wrapper around an XYDataset to convert it to a table model for use in a JTable.
XYDifferenceRenderer	A renderer for an XYPlot that highlights the differences between two series.
XYDotRenderer	A renderer that draws a small dot at each data point for an XYPlot.
XYDrawableAnnotation	A general annotation that can be placed on an XYPlot.
XYImageAnnotation	An annotation that allows an image to be placed at some location on an XYPlot.
XYItemEntity	A chart entity that represents one item within an XYPlot.
XYItemRenderer	Interface for rendering the visual representation of a single (x, y) item on an XYPlot.
XYItemRendererState	The state for an XYItemRenderer.
XYLabelGenerator	Interface for a label generator for plots that use data from an XYDataset.
XYLineAndShapeRenderer	A renderer that can be used with the XYPlot class.
XYLineAndShapeRendererDemo	A simple demonstration of the XYLineAndShapeRenderer class.
XYLineAnnotation	A simple line annotation that can be placed on an XYPlot.
XYLogAxesDemo	A demo showing the use of log axes.
XYPlot	A general class for plotting data in the form of (x, y) pairs.
XYPointerAnnotation	An arrow and label that can be placed on an XYPlot.
XYSeries	Represents a sequence of zero or more data items in the form (x, y).
XYSeriesCollection	Represents a collection of XYSeries objects that can be used as a dataset.
XYSeriesDemo	A simple demo showing a dataset created using the XYSeriesCollection class.
XYSeriesDemo2	Demo for XYSeries, where all the y values are the same.
XYSeriesDemo3	This demo shows a simple bar chart created using the XYSeriesCollection dataset.
XYShapeAnnotation	A simple Shape annotation that can be placed on an XYPlot.
XYStepAreaChartDemo	A simple demonstration application showing how to create a step area chart.
XYStepAreaRenderer	A step chart renderer that fills the area between the step and the x-axis.
XYStepChartDemo	A demonstration of the XYStepRenderer class.
XYStepRenderer	Line/Step item renderer for an XYPlot.
XYTextAnnotation	A text annotation that can be placed at a particular (x, y) location on an XYPlot.
XYTickLabelDemo	An example which shows some bugs with tick labels in version 0.9.13
XYToolTipGenerator	Interface for a tooltip generator for plots that use data from an XYDataset.
XYURLGenerator	Interface for a URL generator for plots that uses data from an XYDataset.
XYZDataset	The interface through which JFreeChart obtains data in the form of (x, y, z) items - used for XY and XYZ plots.
XYZToolTipGenerator	Interface for a tooltip generator for plots that use data from an XYZDataset.
XYZURLGenerator	Interface for a URL generator for plots that uses data from an XYZDataset.
Year	Represents a year in the range 1900 to 9999.
YIntervalChartDemo	A simple demonstration application showing how to create a Y Interval Chart.
YIntervalRenderer	A renderer that draws a line connecting the start and end Y values for an XYPlot.
YisSymbolic	Represent a data set where Y is a symbolic values.
Zoomable	DOCUMENT ME!
ZoomChangeComponent	DOCUMENT ME!
ZoomChangeComponent	Deprecated. Use ZoomChangeComponent instead.
ZoomFitChangeComponent
ZoomFitPlugin	This plugin contains the standard editing tools.
ZoomListener	DOCUMENT ME!
ZoomPlugin	This plug-in is contained in the standard editing tools.
ZoomPlugin	Deprecated. Use ZoomPlugin instead.