Index

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _
All Classes|All Packages

G

gamma - Variable in class qmwi.kseg.som.Map

GanttCategoryDataset - Interface in org.jfree.data.gantt

An extension of the IntervalCategoryDataset interface that adds support for multiple sub-intervals.

GanttDemo1 - Class in org.jfree.chart.demo

A simple demonstration application showing how to create a Gantt chart.

GanttDemo1(String) - Constructor for class org.jfree.chart.demo.GanttDemo1

Creates a new demo.

GanttDemo2 - Class in org.jfree.chart.demo

A simple demonstration application showing how to create a Gantt chart with multiple bars per task.

GanttDemo2(String) - Constructor for class org.jfree.chart.demo.GanttDemo2

Creates a new demo.

GanttRenderer - Class in org.jfree.chart.renderer

A renderer for simple Gantt charts.

GanttRenderer() - Constructor for class org.jfree.chart.renderer.GanttRenderer

Creates a new renderer.

GaussFilter - Class in org.graffiti.editor

GaussFilter(float) - Constructor for class org.graffiti.editor.GaussFilter

ge - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ChartOptions

GENBANKID - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathMolecule

gene - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.EntryType

GeneExpressionFileReader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe

GeneExpressionFileReader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.GeneExpressionFileReader

GENERAL - Static variable in class org.jfree.chart.event.ChartChangeEvent

Event type indicating a general change to a chart (typically just requires a redraw).

GeneralEditorUtils - Class in org.graffiti.util

Some auxiliary routines that need editor functionality.

GeneralEditorUtils() - Constructor for class org.graffiti.util.GeneralEditorUtils

GeneralUtils - Class in org.graffiti.util

GeneralUtils() - Constructor for class org.graffiti.util.GeneralUtils

generateClipPath(Rectangle2D, ValueAxis, ValueAxis) - Method in class org.jfree.chart.ClipPath

Generates the clip path.

generateLabel(CategoryDataset, int, int) - Method in interface org.jfree.chart.labels.CategoryLabelGenerator

Generates a label for the specified item.

generateLabel(CategoryDataset, int, int) - Method in class org.jfree.chart.labels.StandardCategoryLabelGenerator

Generates the label for an item in a dataset.

generateLabel(XYDataset, int, int) - Method in class org.jfree.chart.labels.HighLowItemLabelGenerator

Generates a label for the specified item.

generateLabel(XYDataset, int, int) - Method in class org.jfree.chart.labels.StandardXYLabelGenerator

Generates the item label text for an item in a dataset.

generateLabel(XYDataset, int, int) - Method in class org.jfree.chart.labels.SymbolicXYItemLabelGenerator

Generates a label for the specified item.

generateLabel(XYDataset, int, int) - Method in interface org.jfree.chart.labels.XYLabelGenerator

Generates a label for the specified item.

generateLabelString(XYDataset, int, int) - Method in class org.jfree.chart.labels.AbstractXYItemLabelGenerator

Generates a label string for an item in the dataset.

generateNextUniqueGraphElementId() - Method in class org.graffiti.graph.AbstractGraph

generateNextUniqueGraphElementId() - Method in interface org.graffiti.graph.Graph

returns a unique id for a new graphelement added to this graph

generateSectionLabel(PieDataset, Comparable) - Method in interface org.jfree.chart.labels.PieSectionLabelGenerator

Generates a label for a pie section.

generateSectionLabel(PieDataset, Comparable) - Method in class org.jfree.chart.labels.StandardPieItemLabelGenerator

Generates a label for a pie section.

generateToolTip(CategoryDataset, int, int) - Method in interface org.jfree.chart.labels.CategoryToolTipGenerator

Generates the tool tip text for an item in a dataset.

generateToolTip(CategoryDataset, int, int) - Method in class org.jfree.chart.labels.StandardCategoryToolTipGenerator

Generates the tool tip text for an item in a dataset.

generateToolTip(ContourDataset, int) - Method in interface org.jfree.chart.labels.ContourToolTipGenerator

Generates a tooltip text item for a particular item within a series.

generateToolTip(ContourDataset, int) - Method in class org.jfree.chart.labels.StandardContourToolTipGenerator

Generates a tooltip text item for a particular item within a series.

generateToolTip(PieDataset, Comparable) - Method in interface org.jfree.chart.labels.PieToolTipGenerator

Generates a tool tip text item for the specified item in the dataset.

generateToolTip(PieDataset, Comparable) - Method in class org.jfree.chart.labels.StandardPieItemLabelGenerator

Generates a tool tip text item for one section in a pie chart.

generateToolTip(XYDataset, int, int) - Method in class org.jfree.chart.labels.CustomXYToolTipGenerator

Generates a tool tip text item for a particular item within a series.

generateToolTip(XYDataset, int, int) - Method in class org.jfree.chart.labels.HighLowItemLabelGenerator

Generates a tooltip text item for a particular item within a series.

generateToolTip(XYDataset, int, int) - Method in class org.jfree.chart.labels.StandardXYToolTipGenerator

Generates the tool tip text for an item in a dataset.

generateToolTip(XYDataset, int, int) - Method in class org.jfree.chart.labels.SymbolicXYItemLabelGenerator

Generates a tool tip text item for a particular item within a series.

generateToolTip(XYDataset, int, int) - Method in interface org.jfree.chart.labels.XYToolTipGenerator

Generates the tooltip text for the specified item.

generateToolTip(XYZDataset, int, int) - Method in class org.jfree.chart.labels.StandardXYZToolTipGenerator

Generates a tool tip text item for a particular item within a series.

generateToolTip(XYZDataset, int, int) - Method in interface org.jfree.chart.labels.XYZToolTipGenerator

Generates a tool tip text item for a particular item within a series.

generateToolTipFragment(String) - Method in class org.jfree.chart.imagemap.DynamicDriveToolTipTagFragmentGenerator

Generates a tooltip string to go in an HTML image map.

generateToolTipFragment(String) - Method in class org.jfree.chart.imagemap.OverLIBToolTipTagFragmentGenerator

Generates a tooltip string to go in an HTML image map.

generateToolTipFragment(String) - Method in class org.jfree.chart.imagemap.StandardToolTipTagFragmentGenerator

Generates a tooltip string to go in an HTML image map.

generateToolTipFragment(String) - Method in interface org.jfree.chart.imagemap.ToolTipTagFragmentGenerator

Generates a tooltip string to go in an HTML image map.

generateURL(CategoryDataset, int, int) - Method in interface org.jfree.chart.urls.CategoryURLGenerator

Returns a URL for one item in a dataset.

generateURL(CategoryDataset, int, int) - Method in class org.jfree.chart.urls.StandardCategoryURLGenerator

Generates a URL for a particular item within a series.

generateURL(PieDataset, Comparable, int) - Method in class org.jfree.chart.urls.CustomPieURLGenerator

Generates a URL.

generateURL(PieDataset, Comparable, int) - Method in interface org.jfree.chart.urls.PieURLGenerator

Generates a URL for one item in a PieDataset.

generateURL(PieDataset, Comparable, int) - Method in class org.jfree.chart.urls.StandardPieURLGenerator

Generates a URL.

generateURL(XYDataset, int, int) - Method in class org.jfree.chart.urls.CustomXYURLGenerator

Generates a URL.

generateURL(XYDataset, int, int) - Method in class org.jfree.chart.urls.StandardXYURLGenerator

Generates a URL for a particular item within a series.

generateURL(XYDataset, int, int) - Method in class org.jfree.chart.urls.TimeSeriesURLGenerator

Generates a URL for a particular item within a series.

generateURL(XYDataset, int, int) - Method in interface org.jfree.chart.urls.XYURLGenerator

Generates a URL for a particular item within a series.

generateURL(XYZDataset, int, int) - Method in class org.jfree.chart.urls.StandardXYZURLGenerator

Generates a URL for a particular item within a series.

generateURL(XYZDataset, int, int) - Method in interface org.jfree.chart.urls.XYZURLGenerator

Generates a URL for a particular item within a series.

generateURLFragment(String) - Method in class org.jfree.chart.imagemap.StandardURLTagFragmentGenerator

Generates a URL string to go in an HTML image map.

generateURLFragment(String) - Method in interface org.jfree.chart.imagemap.URLTagFragmentGenerator

Generates a URL string to go in an HTML image map.

GenericBundle - Class in org.graffiti.core

A generalized localized resource bundle.

GenericFileFilter - Class in org.graffiti.core

Contains a generic file filter for filtering file extensions in the file chooser dialog.

GenericFileFilter(String) - Constructor for class org.graffiti.core.GenericFileFilter

Constructor for GenericFileFilter.

GenericPlugin - Interface in org.graffiti.plugin

An interface for a generic plugin for the graffiti graph editor.

GenericPluginAdapter - Class in org.graffiti.plugin

An adapter class for the generic plugin interface.

genes - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.EntryType

GENES - de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggDatabases

genotype - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow

GENOTYPE - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition.ConditionInfo

GErel - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.RelationType

get() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.MySoftReference

get() - Method in class org.vanted.indexednodes.accumulators.StatefulAccumulator

get(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

get(int) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface

get(int) - Static method in class org.Colors

Creates the specified number of color objects, which can be discriminated as good as possible,

get(int) - Method in class org.jfree.chart.axis.TickUnits

Returns the tickunit on the given position.

get(int) - Method in class org.jfree.chart.LegendItemCollection

Returns a legend item from the collection.

get(int) - Method in class org.jfree.data.gantt.TaskSeries

Returns a task from the series.

get(int) - Method in class org.vanted.indexednodes.IndexedNodeSet

get(int, double) - Static method in class org.Colors

get(int, float) - Static method in class org.Colors

Creates the specified number of color objects, which can be discriminated as good as possible.

get(int, int) - Method in class org.jfree.data.MatrixSeries

Returns the value of the specified item in this matrix series.

get(int, int, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ListOfDataRowsExcelExport

Iterate over TreeSet - if the Object with the specified key (cond, time, repl) returns.

get(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DataRowExcelExport

get(String, String) - Method in class org.graffiti.options.GravistoPreferences

get3Color(double, double, double, double, double, Color, Color, Color) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.RecolorEdgesAlgorithm

get3Split(JComponent, JComponent, JComponent, double, double, double) - Static method in class info.clearthought.layout.TableLayout

get3Split(JComponent, JComponent, JComponent, double, double, double, double, double) - Static method in class info.clearthought.layout.TableLayout

get3SplitVertical(JComponent, JComponent, JComponent, double, double, double) - Static method in class info.clearthought.layout.TableLayout

get3SplitVertical(JComponent, JComponent, JComponent, double, double, double, double, double) - Static method in class info.clearthought.layout.TableLayout

get4Split(JComponent, JComponent, JComponent, JComponent, double, double, double) - Static method in class info.clearthought.layout.TableLayout

get4Split(JComponent, JComponent, JComponent, JComponent, double, double, double, double, double, double) - Static method in class info.clearthought.layout.TableLayout

get4SplitVertical(JComponent, JComponent, JComponent, JComponent, double, double, double, double, double, double) - Static method in class info.clearthought.layout.TableLayout

getA() - Method in class org.color.Color_CIE_Lab

getAbbreviation() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggDatabases

getAbsHor() - Method in class org.graffiti.graphics.EdgeLabelPositionAttribute

Returns the absHor.

getAbsVert() - Method in class org.graffiti.graphics.EdgeLabelPositionAttribute

Returns the absVert.

getAcceleratorKeyStroke() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.ErdosRenyiGraphGenerator

getAcceleratorKeyStroke() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.WattsStrogatzGraphGenerator

getAcceleratorKeyStroke() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.ExchangeNodePositionsAlgorithm

getAcceleratorKeyStroke() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.AllPathsSelectionAlgorithm

getAcceleratorKeyStroke() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.ShortestPathSelectionAlgorithm

getAcceleratorKeyStroke() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.WeightedShortestPathSelectionAlgorithm

getAcceleratorKeyStroke() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.MergeNodes

getAcceleratorKeyStroke() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.EvaluateKGML

getAcceleratorKeyStroke() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.RecreateView

getAcceleratorKeyStroke() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color.SetBackgroundColorAlgorithm

getAcceleratorKeyStroke() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color.WindowSettings

getAcceleratorKeyStroke() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph.ApplyGraphLayout

getAcceleratorKeyStroke() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.graph_to_origin_mover.CenterLayouterAlgorithm

getAcceleratorKeyStroke() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ExpandSelectionAlgorithm

getAcceleratorKeyStroke() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.FindReplaceDialog

getAcceleratorKeyStroke() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.InvertSelectionAlgorithm

getAcceleratorKeyStroke() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.RemoveSelectedNodesPreserveEdgesAlgorithm

getAcceleratorKeyStroke() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchAndSelecAlgorithm

getAcceleratorKeyStroke() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.printer.PrintAlgorithm

getAcceleratorKeyStroke() - Method in class org.graffiti.plugin.algorithm.AbstractAlgorithm

Default: no accelerator for the menu item, created for this algorithm.

getAcceleratorKeyStroke() - Method in interface org.graffiti.plugin.algorithm.Algorithm

Override this method to provide a accelerator hot key for the algorithm.

getAcceleratorKeyStroke() - Method in class org.graffiti.plugin.algorithm.ThreadSafeAlgorithm

getAcceleratorKeyStroke() - Method in class org.vanted.plugins.layout.stressminimization.BackgroundExecutionAlgorithm

getAccelModifier() - Static method in class org.SystemInfo

getActionEvent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate.RotateAlgorithm

getActionEvent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph.ApplyGraphLayout

getActionEvent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache.PatternSpringembedder

getActionEvent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder

getActionEvent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder3d

getActionEvent() - Method in class org.graffiti.plugin.algorithm.AbstractAlgorithm

getActionEvent() - Method in interface org.graffiti.plugin.algorithm.Algorithm

getActionEvent() - Method in class org.vanted.plugins.layout.multilevelframework.ForceDirectedLayoutWrapper

getActionEvent() - Method in class org.vanted.plugins.layout.multilevelframework.MultilevelFrameworkLayout

getActionEvent() - Method in class org.vanted.plugins.layout.stressminimization.BackgroundExecutionAlgorithm

getActionListener(URLAttribute, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttributeEditor

getActionListener(Attribute, Graph, GraphElement, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.LoadGraphFileAttributeAction

getActionListener(Attribute, Graph, GraphElement, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.LoadURLattributeAction

getActionListener(Attribute, Graph, GraphElement, boolean) - Method in interface org.graffiti.plugin.actions.URLattributeAction

getActionManager() - Method in class org.graffiti.editor.MainFrame

getActionMap() - Method in class org.graffiti.editor.GlobalHotkeyManager

getActions() - Method in class org.graffiti.managers.DefaultURLattributeActionManager

getActions() - Method in interface org.graffiti.managers.URLattributeActionManager

getActiveDetachedFrame() - Method in class org.graffiti.editor.MainFrame

getActiveDirectory() - Static method in class org.OpenFileDialogService

getActiveEditorSession() - Method in class org.graffiti.editor.MainFrame

Returns the current active editor session.

getActiveGraphViewImage(Graph, int, String, PngJpegAlgorithmParams, BackgroundTaskStatusProviderSupportingExternalCall) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithm

getActiveGraphViewImage(Graph, int, String, PngJpegAlgorithmParams, BackgroundTaskStatusProviderSupportingExternalCall, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithm

getActiveGraphViewImage(Graph, int, String, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithm

getActiveGraphViewImage(Graph, int, String, BackgroundTaskStatusProviderSupportingExternalCall, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithm

getActiveHosts() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network.BroadCastTask

getActiveMode() - Method in class org.graffiti.session.Session

Returns the mode that is active in this session.

getActiveNodeSelection() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.ContextMenuHelper

getActiveSelection() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.ContextMenuHelper

getActiveSelection() - Method in class org.graffiti.selection.SelectionModel

Returns the active selection.

getActiveSession() - Method in class org.graffiti.editor.MainFrame

Returns the current active session.

getActiveSession() - Method in interface org.graffiti.session.SessionManager

Returns the current active session.

getActiveTool() - Method in class org.graffiti.plugin.gui.ModeToolbar

Returns the tool that is selected in this ModeToolbar's button group.

getActiveTool() - Static method in class org.graffiti.plugin.tool.AbstractTool

getActiveView() - Method in class org.graffiti.session.Session

Returns the activeView.

getAdapter() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsPanel

Get the BiomodelsAccessAdapter.

getAddon(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.AddonManagerPlugin

getAddonIcon() - Static method in class org.graffiti.plugin.GenericPluginAdapter

getAddons() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.AddonManagerPlugin

Gets the all the Add-ons as a list.

getAdjMatrixGraph() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.UllmannSubraphIsomAdjMatrixState

getAdjMatrixPattern() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.UllmannSubraphIsomAdjMatrixState

getAdjustForDaylightSaving() - Method in class org.jfree.chart.axis.SegmentedTimeline

Returns the flag that controls whether or not the daylight saving adjustment is applied.

getAdvanceLinePaint() - Method in class org.jfree.chart.axis.CyclicNumberAxis

The advance line is the line drawn at the limit of the current cycle, when erasing the previous cycle.

getAdvanceLineStroke() - Method in class org.jfree.chart.axis.CyclicNumberAxis

The advance line is the line drawn at the limit of the current cycle, when erasing the previous cycle.

getAffyHit() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getAffyHit() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getAffyOrAgilAnnotationFiles() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.OpenExcelFileDialogService

getAlgebraicRuleHeadlines(Graph) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLRuleHelper

getAlgorithm() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.services.HandlesAlgorithmData

getAlgorithm() - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.RunAlgorithmDialog

getAlgorithm() - Method in class org.vanted.plugins.layout.multilevelframework.LayoutAlgorithmWrapper

getAlgorithmClassName() - Method in class org.graffiti.editor.actions.RunAlgorithm

Get the name of the algorithm that this action will run.

getAlgorithmInstanceFromFriendlyName(String) - Method in class org.graffiti.editor.GravistoService

Returns a algorithm instance, defined by its name (e.g.

getAlgorithmList() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.launch_gui.LaunchGui

getAlgorithmList() - Method in interface org.graffiti.plugin.algorithm.ProvidesAccessToOtherAlgorithms

getAlgorithms() - Method in interface org.graffiti.managers.AlgorithmManager

Returns a java.util.List containing all the Algorithm instances the manager contains.

getAlgorithms() - Method in class org.graffiti.managers.DefaultAlgorithmManager

getAlgorithms() - Method in interface org.graffiti.plugin.GenericPlugin

Returns the array of org.graffiti.algorithm.Algorithms the plugin contains.

getAlgorithms() - Method in class org.graffiti.plugin.GenericPluginAdapter

Returns the array of org.graffiti.algorithm.Algorithms the plugin contains.

getAlignment() - Method in class org.graffiti.graphics.LabelAttribute

getAlignmentSetting() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment.PositionButton

getAlignmentText() - Method in class org.graffiti.graphics.LabelAttribute

getAlignSegment() - Method in class org.graffiti.graphics.EdgeLabelPositionAttribute

Returns the alignSegment.

getAll() - Method in class placement.MaxPairingHeap

getAll() - Method in interface placement.MaxPriorityQueue

getAll() - Method in class placement.ScanListPriorityQueue

getAll() - Method in class placement.SlowPriorityQueue

getAllAssignmentRules(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns a list of assignment rules with distinct headlines

getAllChildNodes(List<Node>) - Method in interface org.graffiti.graph.NodeHierarchy

getAllChildNodes(Node) - Method in interface org.graffiti.graph.NodeHierarchy

getAllCompartments(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns a list of compartments with distinct headlines

getAllConstraints(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns a list of constraint with distinct headlines

getAllEnumValue() - Method in class org.graffiti.plugin.parameter.EnumParameter

this will return all possible enum values contained in the enum stored in this object

getAllEvent(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns a list of event with distinct headlines

getAllFunctionDefinitions(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns a list of filled JSBML FunctionDefinition objects

getAllGoTerms() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.GoProcessing

getAllGuiRows() - Method in class org.FolderPanel

getAllInEdges() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getAllInEdges() - Method in class org.graffiti.graph.AbstractNode

getAllInEdges() - Method in interface org.graffiti.graph.Node

Union of getDirectedInEdges() and getUndirectedEdges() .

getAllInitialAssignment(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns a list of initial assignment with distinct headlines

getAllInNeighbors() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getAllInNeighbors() - Method in class org.graffiti.graph.AbstractNode

getAllInNeighbors() - Method in interface org.graffiti.graph.Node

Union of getInNeighbors() and getUndirectedNeighbors() .

getAllMeasurements() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

getAllNumbersFromString(String) - Static method in class org.StringManipulationTools

getAllocatedY() - Method in class org.jfree.chart.plot.PieLabelRecord

Returns the allocated y-coordinate.

getAllOutChildNodes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getAllOutEdges() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getAllOutEdges() - Method in class org.graffiti.graph.AbstractNode

getAllOutEdges() - Method in interface org.graffiti.graph.Node

Union of getDirectedOutEdges() and getUndirectedEdges() .

getAllOutNeighbors() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getAllOutNeighbors() - Method in class org.graffiti.graph.AbstractNode

getAllOutNeighbors() - Method in interface org.graffiti.graph.Node

Union of getOutNeighbors() and getUndirectedNeighbors().

getAllowDuplicateXValues() - Method in class org.jfree.data.XYSeries

Returns a flag that controls whether duplicate x-values are allowed.

getAllowNegativesFlag() - Method in class org.jfree.chart.axis.LogarithmicAxis

Returns the 'allowNegativesFlag' flag; true to allow negative values in data, false to be able to plot positive values arbitrarily close to zero.

getAllParameters(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns a list of parameter with distinct headlines

getAllParentNodes(List<Node>) - Method in interface org.graffiti.graph.NodeHierarchy

getAllParentNodes(Node) - Method in interface org.graffiti.graph.NodeHierarchy

getAllReactionIds() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionService

getAllUnitDefinitions(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns a filled list of UnitDefinition objects

getAllValidExtensions() - Static method in class de.ipk_gatersleben.ag_pbi.datahandling.TemplateManager

getAllWhere(Vector, int, String) - Static method in class qmwi.kseg.som.Tools

getAlpha() - Method in class org.jfree.chart.plot.Marker

Returns the alpha transparency.

getAlpha() - Method in class org.vanted.plugins.layout.stressminimization.StressMinParamModel.MethodAlphaGroup

getAlphaColor(int, int, int) - Static method in class org.Colors

getAlphaColors(int, int) - Static method in class org.Colors

getAlternativeIdCount(Node, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

getAlternativeIDs() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

Enumerate alternative identifiers, assigned to the mapped xml substance data.

getAlternativeIDs(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

getAlternativeIDsWithIdx(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

Enumerate alternative identifiers, assigned to the mapped xml substance data.

getAlternativePaths(Node, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchDialog

getAlternativeTableData(ArrayList<String[][]>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.AlternativeIdentifierTableData

getAN() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeEntry

getAnchor() - Method in interface org.graffiti.plugin.view.ArrowShape

Returns the anchor of the arrow, i.e.

getAnchor() - Method in class org.graffiti.plugins.views.defaults.AbstractArrowShape

Returns the anchor of the arrow, i.e.

getAnchor() - Method in class org.jfree.chart.Legend

Returns the current anchor of this legend.

getAnchorValue() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the anchor value.

getAngle() - Method in class org.jfree.chart.annotations.XYPointerAnnotation

Returns the angle of the arrow.

getAngle() - Method in class org.jfree.chart.axis.CategoryLabelPosition

Returns the angle of rotation for the label.

getAngle() - Method in class org.jfree.chart.axis.Tick

Returns the angle.

getAngle() - Method in class org.jfree.chart.labels.ItemLabelPosition

Returns the angle of rotation for the label.

getAngle() - Method in class org.jfree.chart.plot.PieLabelRecord

Returns the angle.

getAngleGridlinePaint() - Method in class org.jfree.chart.plot.PolarPlot

Returns the paint for the grid lines (if any) plotted against the angular axis.

getAngleGridlineStroke() - Method in class org.jfree.chart.plot.PolarPlot

Returns the stroke for the grid-lines (if any) plotted against the angular axis.

getAngleLabelFont() - Method in class org.jfree.chart.plot.PolarPlot

Returns the font used to display the angle labels.

getAngleLabelPaint() - Method in class org.jfree.chart.plot.PolarPlot

Returns the paint used to display the angle labels.

getAnnotation(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.KineticLawHelper

getAnnotation(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter

getAnnotation(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getAnnotation(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper

getAnnotationModifier(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getAnnotationProduct(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getAnnotationReactant(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getAnnotations() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the list of annotations.

getAnnotations(Collection<File>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.AbstractExperimentDataProcessor

getAnnotations(Collection<File>) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataProcessor

Can be used to support the user specifying the annotation more easily (e.g.

getAntiAlias() - Method in class org.jfree.chart.JFreeChart

Returns a flag that indicates whether or not anti-aliasing is used when the chart is drawn.

getAntiAlias() - Method in class org.jfree.chart.ui.ChartPropertyEditPanel

Returns the current setting of the anti-alias flag.

getAppFolder() - Static method in class org.ReleaseInfo

getAppFolderWithFinalSep() - Static method in class org.ReleaseInfo

getApplet() - Static method in class org.ReleaseInfo

Deprecated.

getAppLoadingStatus() - Static method in class org.ErrorMsg

getAppSubdirFolder(String) - Static method in class org.ReleaseInfo

getAppSubdirFolder(String, String) - Static method in class org.ReleaseInfo

getAppSubdirFolderWithFinalSep(String) - Static method in class org.ReleaseInfo

getAppSubdirFolderWithFinalSep(String, String) - Static method in class org.ReleaseInfo

getAppWebURL() - Static method in class org.ReleaseInfo

getArea() - Method in class org.jfree.chart.entity.ChartEntity

Returns the area occupied by the entity (in Java 2D space).

getArrowhead() - Method in class org.graffiti.graphics.EdgeGraphicAttribute

Returns the 'arrowhead'-value of the encapsulated edge.

getArrowhead(Edge) - Static method in class org.AttributeHelper

getArrowLength() - Method in class org.jfree.chart.annotations.XYPointerAnnotation

Returns the arrow length.

getArrowPaint() - Method in class org.jfree.chart.annotations.XYPointerAnnotation

Sets the paint used for the arrow.

getArrowShapeClassNameFromGMLarrowStyle(String) - Static method in class org.graffiti.plugins.ios.exporters.gml.GMLWriter

getArrowSize(Edge) - Static method in class org.AttributeHelper

getArrowStroke() - Method in class org.jfree.chart.annotations.XYPointerAnnotation

Returns the stroke used to draw the arrow line.

getArrowtail() - Method in class org.graffiti.graphics.EdgeGraphicAttribute

Returns the 'arrowtail'-value of the encapsulated edge.

getArrowtail(Edge) - Static method in class org.AttributeHelper

getArrowWidth() - Method in class org.jfree.chart.annotations.XYPointerAnnotation

Returns the arrow width.

getArtifactPaint() - Method in class org.jfree.chart.renderer.BoxAndWhiskerRenderer

Returns the paint used to color the median and average markers.

getArtifactPaint() - Method in class org.jfree.chart.renderer.XYBoxAndWhiskerRenderer

Returns the paint used to paint the various artifacts such as outliers, farout symbol, median line and the averages ellipse.

getAssignmentRuleHeadlines(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns a list of all assignment rule headlines in the graph

getAssignmentRuleHeadlines(Graph) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLRuleHelper

getAttribut(int) - Method in class qmwi.kseg.som.diagram.AttributsClass

Insert the method's description here.

getAttribut(int) - Method in class qmwi.kseg.som.diagram.ClassesClass

Insert the method's description here.

getAttribut(int) - Method in class qmwi.kseg.som.diagram.ClassesObject

Insert the method's description here.

getAttribut(int, int) - Method in class qmwi.kseg.som.diagram.AttributsAll

Insert the method's description here.

getAttribut(int, int) - Method in class qmwi.kseg.som.diagram.ClassesClass

Insert the method's description here.

getAttribut(int, int, int) - Method in class qmwi.kseg.som.diagram.ClassesAll

Insert the method's description here.

getAttributable() - Method in class org.graffiti.attributes.AbstractAttribute

Returns the Attribute's Attributable.

getAttributable() - Method in class org.graffiti.attributes.AbstractCollectionAttribute

Returns the Attribute's Attributable.

getAttributable() - Method in interface org.graffiti.attributes.Attribute

Returns the attributable the Attribute belongs to.

getAttribute() - Method in class org.graffiti.event.AttributeEvent

Returns the attribute that has been changed by this event.

getAttribute() - Method in class org.graffiti.plugin.attributecomponent.AbstractAttributeComponent

Returns the attribute that is displayed by this component.

getAttribute() - Method in class org.graffiti.plugin.view.AttributeComponent

Returns the attribute that is displayed by this component.

getAttribute() - Method in class org.graffiti.plugins.inspectors.defaults.BooledAttribute

Returns the attribute.

getAttribute(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getAttribute(String) - Method in class org.graffiti.attributes.AbstractAttributable

Returns the Attribute of the given path.

getAttribute(String) - Method in class org.graffiti.attributes.AbstractCollectionAttribute

Returns the attribute located at path.

getAttribute(String) - Method in interface org.graffiti.attributes.Attributable

Returns the Attribute located at the given path.

getAttribute(String) - Method in interface org.graffiti.attributes.CollectionAttribute

Returns the Attribute located at path.

getAttribute(String) - Method in class org.graffiti.attributes.CompositeAttribute

Returns the attribute with the given id.

getAttribute(String) - Method in class org.graffiti.graphics.AWTImageAttribute

getAttribute(Attributable, String) - Static method in class org.AttributeHelper

getAttribute(Edge, String, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_SBase_Writer

getAttribute(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttribute

getAttribute(GraphElement, String, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_SBase_Writer

getAttribute(Graph, String, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_SBase_Writer

Shortens the statement for getting the value of an attribute

getAttribute(Node, String, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_SBase_Writer

Shortens the statement for getting the value of an attribute

getAttributeable() - Method in class org.graffiti.event.AttributeEvent

getAttributeable() - Method in class org.graffiti.event.EdgeEvent

getAttributeable() - Method in class org.graffiti.event.GraphEvent

getAttributeable() - Method in class org.graffiti.event.NodeEvent

getAttributeClass() - Method in class org.graffiti.attributes.AttributeDescription

getAttributeComponent(Class<?>) - Method in class org.graffiti.managers.AttributeComponentManager

Returns an instance of the AttributeComponent that is capable of drawing the attribute with type aType.

getAttributeComponent(Attribute) - Method in interface org.graffiti.plugin.view.GraphElementComponentInterface

Returns the attributeComponents of given attribute.

getAttributeComponent(Attribute) - Method in class org.graffiti.plugins.views.defaults.AbstractGraphElementComponent

Returns the attributeComponents of given attribute.

getAttributeComponentIterator() - Method in interface org.graffiti.plugin.view.GraphElementComponentInterface

Returns the attributeComponents of given attribute.

getAttributeComponentIterator() - Method in class org.graffiti.plugins.views.defaults.AbstractGraphElementComponent

Returns the attributeComponents of given attribute.

getAttributeComponentManager() - Method in class org.graffiti.editor.MainFrame

getAttributeComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartAttributePlugin

getAttributeComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartAttributePlugin

getAttributeComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttributePlugin

getAttributeComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundImageAttributePlugin

getAttributeComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_color.LabelColorAttributePlugin

getAttributeComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings.LabelFontAttributePlugin

getAttributeComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style.LabelStyleAttributePlugin

getAttributeComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttributePlugin

getAttributeComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggAttributePlugin

getAttributeComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment.LabelAlignmentAttributePlugin

getAttributeComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttributePlugin

getAttributeComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttributePlugin

getAttributeComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.DBEplugin

getAttributeComponents() - Method in class org.graffiti.managers.AttributeComponentManager

Returns the map of attribute components.

getAttributeComponents() - Method in interface org.graffiti.plugin.EditorPlugin

Returns a mapping between attribute paths and attributeComponent classes.

getAttributeComponents() - Method in class org.graffiti.plugin.EditorPluginAdapter

Returns a mapping between attribute classnames and attributeComponent classnames.

getAttributeComponents() - Method in interface org.graffiti.plugin.view.GraphElementComponentInterface

getAttributeComponents() - Method in class org.graffiti.plugins.views.defaults.AbstractGraphElementComponent

getAttributeComponentsForElement(GraphElement) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView

getAttributeComponentsForElement(GraphElement) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView

getAttributeComponentsForElement(GraphElement) - Method in class org.graffiti.plugin.view.AbstractView

getAttributeComponentsForElement(GraphElement) - Method in interface org.graffiti.plugin.view.View

getAttributeDescriptions() - Method in interface org.graffiti.plugin.GenericPlugin

getAttributeDescriptions() - Method in class org.graffiti.plugin.GenericPluginAdapter

getAttributeDialog(int) - Method in class de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoaderInstance

getAttributeDialog(int) - Method in interface de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoaderInterface

getAttributeInstance(String, String) - Method in class org.graffiti.attributes.AttributeTypesManager

Returns an instance of the class that is associated with the name of the attribute.

getAttributeName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.AttributePathNameSearchType

getAttributePath() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.AttributePathNameSearchType

getAttributes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getAttributes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.FontChooser

getAttributes() - Method in class org.graffiti.attributes.AbstractAttributable

Returns the root CollectionAttribute which contains the attributes of the current object.

getAttributes() - Method in interface org.graffiti.attributes.Attributable

Returns the attributes of the current object in the base hierarchie in a CollectionAttribute.

getAttributes() - Method in class org.graffiti.attributes.CompositeAttribute

Transforms the CompositeAttribute into the basehierarchy.

getAttributes() - Method in class org.graffiti.graphics.AWTImageAttribute

getAttributes() - Method in class org.graffiti.graphics.LineModeAttribute

getAttributes() - Method in interface org.graffiti.plugin.GenericPlugin

Returns the attribute types provided by this plugin.

getAttributes() - Method in class org.graffiti.plugin.GenericPluginAdapter

Returns the attribute types provided by this plugin.

getAttributeString(StringBuilder, String[], Object[]) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getAttributeString(StringBuilder, String[], Object[], boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getAttributeTypes() - Method in class org.graffiti.attributes.AttributeTypesManager

Returns a map of all known Attribute types.

getAttributeValue(String, String, Object, Object) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getAttributeValue(Attributable, String, String, Object, Object) - Static method in class org.AttributeHelper

getAttributeValue(Attributable, String, String, Object, Object, boolean) - Static method in class org.AttributeHelper

Return an Attribute value, if not present, return the defaultValue.

getAttributeValue(GraphElement, double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.AttributePathNameSearchType

getAttributeValue(Element, String, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KGMLhelper

getAttributeValueSet(Collection<Attributable>, String, String, Object, Object, boolean) - Static method in class org.AttributeHelper

getAttributName(int) - Method in class qmwi.kseg.som.diagram.ClassesAll

Insert the method's description here.

getAttributNameIndex(String) - Method in class qmwi.kseg.som.diagram.ClassesAll

Insert the method's description here.

getAttributs() - Method in class qmwi.kseg.som.diagram.ClassesObject

Insert the method's description here.

getAttributSelectedIndex(int) - Method in class qmwi.kseg.som.diagram.ClassesAll

Insert the method's description here.

getAttributSelectedName(int) - Method in class qmwi.kseg.som.diagram.ClassesAll

Insert the method's description here.

getAttributsNames() - Method in class qmwi.kseg.som.diagram.ClassesAll

Insert the method's description here.

getAttributsSelected() - Method in class qmwi.kseg.som.diagram.ClassesAll

Insert the method's description here.

getAttributsValue(int, int) - Method in class qmwi.kseg.som.diagram.AttributsAll

Insert the method's description here.

getAttributsValues(int) - Method in class qmwi.kseg.som.diagram.AttributsAll

Insert the method's description here.

getAttributValueCount(int, int) - Method in class qmwi.kseg.som.diagram.AttributsClass

Insert the method's description here.

getAttributValueCount(int, int, int) - Method in class qmwi.kseg.som.diagram.AttributsAll

Insert the method's description here.

getAttTypesManager() - Method in class org.graffiti.graph.AbstractGraph

Returns the AttributeTypesManager of the graph.

getAttTypesManager() - Method in interface org.graffiti.graph.Graph

Returns the AttributeTypesManager of the Graph.

getAuthor() - Method in class org.graffiti.managers.pluginmgr.PluginDependency

Returns the author.

getAuthor() - Method in class org.graffiti.managers.pluginmgr.PluginDescription

Returns the author.

getAutoRangeMinimumSize() - Method in class org.jfree.chart.axis.ValueAxis

Returns the minimum size allowed for the axis range when it is automatically calculated.

getAutoscrollInsets() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView

getAutoscrollInsets() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView

getAutoscrollInsets() - Method in class org.graffiti.plugin.view.AbstractView

getAutoscrollInsets() - Method in class org.graffiti.plugins.views.matrix.MatrixView

getAutoSort() - Method in class org.jfree.data.XYSeries

Returns the flag that controls whether the items in the series are automatically sorted.

getAutoWidthFactor() - Method in class org.jfree.chart.renderer.CandlestickRenderer

Returns the factor by which the available space automatically calculated for the candles will be multiplied to determine the actual width to use.

getAutoWidthGap() - Method in class org.jfree.chart.renderer.CandlestickRenderer

Returns the amount of space to leave on the left and right of each candle when automatically calculating widths.

getAutoWidthMethod() - Method in class org.jfree.chart.renderer.CandlestickRenderer

Returns the method of automatically calculating the candle width.

getAvailable() - Method in class org.graffiti.managers.pluginmgr.PluginDependency

Returns the available.

getAvailable() - Method in class org.graffiti.managers.pluginmgr.PluginDescription

Returns the available.

getAvailableAlgorithms() - Static method in class org.graffiti.util.PluginHelper

getAvailableAttributes() - Static method in class org.graffiti.util.PluginHelper

getAvailableScnenarios() - Static method in class scenario.ScenarioService

getAverage() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.GraphElementHelper

getAverage() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getAverage() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getAverage() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getAverage() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.SampleEntry

getAverage(Number[]) - Static method in class org.jfree.data.statistics.Statistics

Deprecated.

Renamed calculateMean().

getAverage(ArrayList<ReplicateDouble>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentData

getAverageColor(ArrayList<Color>) - Static method in class org.color.ColorUtil

getAveragedOutlier() - Method in class org.jfree.chart.renderer.OutlierList

Returns the averaged outlier.

getAverageUnit() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample

getAverageUnit() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface

getAxesAtBottom() - Method in class org.jfree.chart.axis.AxisCollection

Returns a list of the axes (if any) that need to be drawn at the bottom of the plot area.

getAxesAtLeft() - Method in class org.jfree.chart.axis.AxisCollection

Returns a list of the axes (if any) that need to be drawn at the left of the plot area.

getAxesAtRight() - Method in class org.jfree.chart.axis.AxisCollection

Returns a list of the axes (if any) that need to be drawn at the right of the plot area.

getAxesAtTop() - Method in class org.jfree.chart.axis.AxisCollection

Returns a list of the axes (if any) that need to be drawn at the top of the plot area.

getAxis() - Method in class org.jfree.chart.axis.ColorBar

Returns the axis.

getAxis() - Method in class org.jfree.chart.event.AxisChangeEvent

Returns the axis that generated the event.

getAxisColor(Graph, Color) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

getAxisLinePaint() - Method in class org.jfree.chart.axis.Axis

Returns the paint used to draw the axis line.

getAxisLineStroke() - Method in class org.jfree.chart.axis.Axis

Returns the stroke used to draw the axis line.

getAxisocation() - Method in class org.jfree.chart.plot.ThermometerPlot

Returns the axis location.

getAxisOffset() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the axis offset.

getAxisOffset() - Method in class org.jfree.chart.plot.XYPlot

Returns the axis offset.

getB() - Method in class org.color.Color_CIE_Lab

getBackCol() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyScatterBlock

getBackgroundAlpha() - Method in class org.jfree.chart.plot.Plot

Returns the alpha transparency of the plot area background.

getBackgroundImage() - Method in class org.graffiti.graphics.GraphElementGraphicAttribute

Returns the 'backgroundimage'-value of the encapsulated edge.

getBackgroundImage() - Method in class org.jfree.chart.JFreeChart

Returns the background image for the chart, or null if there is no image.

getBackgroundImage() - Method in class org.jfree.chart.plot.Plot

Returns the background image that is used to fill the plot's background area.

getBackgroundImageAlignment() - Method in class org.jfree.chart.JFreeChart

Returns the background image alignment.

getBackgroundImageAlignment() - Method in class org.jfree.chart.plot.Plot

Returns the background image alignment.

getBackgroundImageAlpha() - Method in class org.jfree.chart.JFreeChart

Returns the alpha-transparency for the chart's background image.

getBackgroundPaint() - Method in class org.jfree.chart.JFreeChart

Returns the paint used for the chart background.

getBackgroundPaint() - Method in class org.jfree.chart.plot.Plot

Returns the background color of the plot area.

getBackgroundPaint() - Method in class org.jfree.chart.StandardLegend

Returns the background paint for the legend.

getBackgroundPaint() - Method in class org.jfree.chart.title.TextTitle

Returns the background paint.

getBackgroundPaint() - Method in class org.jfree.chart.ui.ChartPropertyEditPanel

Returns the current background paint.

getBackgroundPaint() - Method in class org.jfree.chart.ui.PlotPropertyEditPanel

Returns the current background paint.

getBarWidth() - Method in class org.jfree.chart.renderer.CategoryItemRendererState

Returns the bar width.

getBaseItemLabelAnchor() - Method in class org.jfree.chart.renderer.AbstractRenderer

Deprecated.

Use getBasePositiveItemLabelPosition()/getBaseNegativeItemLabelPosition().

getBaseItemLabelAnchor() - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Deprecated.

Use getBasePositiveItemLabelPosition() or getBaseNegativeItemLabelPosition().

getBaseItemLabelAngle() - Method in class org.jfree.chart.renderer.AbstractRenderer

Deprecated.

Use getBasePositiveItemLabelPosition()/getBaseNegativeItemLabelPosition().

getBaseItemLabelFont() - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the base item label font (this is used when no other font setting is available).

getBaseItemLabelFont() - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the base item label font (this is used when no other font setting is available).

getBaseItemLabelFont() - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the base item label font (this is used when no other font setting is available).

getBaseItemLabelPaint() - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the base item label paint.

getBaseItemLabelPaint() - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the base item label paint.

getBaseItemLabelPaint() - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the base item label paint.

getBaseItemLabelRotationAnchor() - Method in class org.jfree.chart.renderer.AbstractRenderer

Deprecated.

Use getBasePositiveItemLabelPosition()/getBaseNegativeItemLabelPosition().

getBaseItemLabelsVisible() - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the base setting for item label visibility.

getBaseItemLabelsVisible() - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the base setting for item label visibility.

getBaseItemLabelsVisible() - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the base setting for item label visibility.

getBaseItemLabelTextAnchor() - Method in class org.jfree.chart.renderer.AbstractRenderer

Deprecated.

Use getBasePositiveItemLabelPosition()/getBaseNegativeItemLabelPosition().

getBaseItemLabelTextAnchor() - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Deprecated.

Use setBasePositiveItemLabelPosition() or setBaseNegativeItemLabelPosition().

getBaseItemURLGenerator() - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer

Returns the base item URL generator.

getBaseItemURLGenerator() - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the base item URL generator.

getBaseLabelGenerator() - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer

Returns the base label generator.

getBaseLabelGenerator() - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer

Returns the base item label generator.

getBaseLabelGenerator() - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the base label generator.

getBaseLabelGenerator() - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the base item label generator.

getBaseNegativeItemLabelPosition() - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the base item label position for negative values.

getBaseNegativeItemLabelPosition() - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the base item label position for negative values.

getBaseNegativeItemLabelPosition() - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the base item label position for negative values.

getBaseOutlinePaint() - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the base outline paint.

getBaseOutlinePaint() - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the base outline paint.

getBaseOutlinePaint() - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the base outline paint.

getBaseOutlineStroke() - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the base outline stroke.

getBaseOutlineStroke() - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the base outline stroke.

getBaseOutlineStroke() - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the base outline stroke.

getBasePaint() - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the base paint.

getBasePaint() - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the base paint.

getBasePaint() - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the base paint.

getBasePositiveItemLabelPosition() - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the base positive item label position.

getBasePositiveItemLabelPosition() - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the base positive item label position.

getBasePositiveItemLabelPosition() - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the base positive item label position.

getBaseRadius() - Method in class org.jfree.chart.annotations.XYPointerAnnotation

Sets the base radius.

getBaseSectionOutlinePaint() - Method in class org.jfree.chart.plot.PiePlot

Returns the base section paint.

getBaseSectionOutlineStroke() - Method in class org.jfree.chart.plot.PiePlot

Returns the base section stroke.

getBaseSectionPaint() - Method in class org.jfree.chart.plot.PiePlot

Returns the base section paint.

getBaseShape() - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the base shape.

getBaseShape() - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the base shape.

getBaseShape() - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the base shape.

getBaseStroke() - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the base stroke.

getBaseStroke() - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the base stroke.

getBaseStroke() - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the base stroke.

getBaseTimeline() - Method in class org.jfree.chart.axis.SegmentedTimeline

Returns our baseTimeline, or null if none.

getBaseToolTipGenerator() - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer

Returns the base tool tip generator (the "layer 2" generator).

getBaseToolTipGenerator() - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer

Returns the base tool tip generator.

getBaseToolTipGenerator() - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the base tool tip generator (the "layer 2" generator).

getBaseToolTipGenerator() - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the base tool tip generator.

getBaseUrl() - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.web.RestService

getBaseY() - Method in class org.jfree.chart.plot.PieLabelRecord

Returns the base y-coordinate.

getBendAttributes() - Method in class org.graffiti.graphics.EdgeGraphicAttribute

getBendCount() - Method in class org.graffiti.graphics.EdgeGraphicAttribute

getBends() - Method in class org.graffiti.graphics.EdgeGraphicAttribute

Returns the collection of CoordinateAttributes specifying the bends for this edge.

getBestAutoOutsideSetting(Node) - Static method in class org.graffiti.plugins.attributecomponents.simplelabel.LabelComponent

getBfsNum() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.TreeContainer

getBfsNumUpsideDown() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.TreeContainer

getBGcolor() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Graphics

getBindPort() - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.network.BroadCastService

getBinWidth() - Method in class org.jfree.data.statistics.HistogramBin

Returns the bin width.

getBlockEdges() - Method in class org.graffiti.plugins.views.defaults.GraffitiView

getBlue() - Method in class org.graffiti.graphics.ColorAttribute

Returns the 'blue'-value of the encapsulated color.

getBool() - Method in class org.graffiti.plugins.inspectors.defaults.BooledAttribute

Returns the bool.

getBoolean() - Method in class org.graffiti.attributes.BooleanAttribute

Returns the value of this object.

getBoolean() - Method in class org.graffiti.plugin.parameter.BooleanParameter

Returns the value of this parameter as a Boolean.

getBoolean(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getBoolean(String) - Method in class org.graffiti.attributes.AbstractAttributable

Returns the value of the Attribute at the given path.

getBoolean(String) - Method in interface org.graffiti.attributes.Attributable

Returns the value of the Attribute at the given path.

getBooleanSettingsEditor(String, String, Runnable, Runnable) - Method in class org.SettingsHelperDefaultIsTrue

getBorderColor() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getBorderColor() - Method in class org.graffiti.plugins.attributecomponents.simplelabel.ViewLabel

getBorderedComponent(int, int, int, int) - Method in class org.FolderPanel

getBorderedComponent(JComponent, int, int, int, int) - Static method in class org.FolderPanel

getBorderInsets(Component) - Method in class org.graffiti.plugin.tool.EdgeBorder

getBorderInsets(Component) - Method in class org.graffiti.plugin.tool.NodeBorder

getBorderInsets(Component, Insets) - Method in class org.graffiti.plugin.tool.EdgeBorder

Sets the insets to the value of width.

getBorderInsets(Component, Insets) - Method in class org.graffiti.plugin.tool.NodeBorder

Sets the insets to the value of width.

getBorderPaint() - Method in class org.jfree.chart.JFreeChart

Returns the paint used to draw the chart border (if visible).

getBorderStroke() - Method in class org.jfree.chart.JFreeChart

Returns the stroke used to draw the chart border (if visible).

getBorderType() - Method in class org.jfree.data.DefaultMeterDataset

Deprecated.

Returns the border type.

getBorderType() - Method in interface org.jfree.data.MeterDataset

Deprecated.

Returns the border type for the data.

getBorderWidth() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getBorderWidth() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams

getBottom() - Method in class org.jfree.chart.axis.AxisSpace

Returns the bottom space.

getBottomCategoryLabelPosition() - Method in class org.jfree.chart.axis.CategoryAxis

Deprecated.

Use getCategoryLabelPositions().getLabelPosition(RectangleEdge.BOTTOM).

getBoundaryCondition(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper

Returns the boolean value boundaryCondition of the species

getBoundingBoxArcHeight() - Method in class org.jfree.chart.StandardLegend

Returns the height of the arc used to round off the corners of the bounding box.

getBoundingBoxArcWidth() - Method in class org.jfree.chart.StandardLegend

Returns the width of the arc used to round off the corners of the bounding box.

getBounds() - Method in class org.graffiti.plugins.views.defaults.AbstractArrowShape

DOCUMENT ME!

getBounds() - Method in class org.graffiti.plugins.views.defaults.LineEdgeShape

DOCUMENT ME!

getBounds() - Method in class org.graffiti.plugins.views.defaults.PolygonalNodeShape

DOCUMENT ME!

getBounds() - Method in class org.graffiti.plugins.views.defaults.RectangularNodeShape

DOCUMENT ME!

getBounds() - Method in class org.jfree.chart.renderer.HighLow

Returns the bounds.

getBounds2D() - Method in class org.graffiti.plugins.views.defaults.AbstractArrowShape

DOCUMENT ME!

getBounds2D() - Method in class org.graffiti.plugins.views.defaults.LineEdgeShape

DOCUMENT ME!

getBounds2D() - Method in class org.graffiti.plugins.views.defaults.PolygonalNodeShape

DOCUMENT ME!

getBounds2D() - Method in class org.graffiti.plugins.views.defaults.RectangularNodeShape

DOCUMENT ME!

getBoxWidth() - Method in class org.jfree.chart.renderer.XYBoxAndWhiskerRenderer

Returns the width of each box.

getBreite(int) - Static method in class qmwi.kseg.som.Tools

getBriteEntryByEC(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.BriteHierarchy

Method to get all Brite Entries (Leaf nodes in the hierarchy) that match the given EC number

getBriteEntryById(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.BriteHierarchy

Method to get all Brite Entries (Leaf nodes in the hierarchy) that match the given ID

getBriteEntryForHierarchyByEC(String, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggBriteService

Method to get all Brite Entries (Leaf nodes in the hierarchy) that match the It is a convenience method.

getBriteEntryForHierarchyByID(String, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggBriteService

Method to get all Brite Entries (Leaf nodes in the hierarchy) that match the given ID It is a convenience method.

getBriteHierarchy(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggBriteService

Returns a map between brite ids and hierarchies

getBuff() - Method in class org.graffiti.plugin.io.resources.MyByteArrayInputStream

getBuff() - Method in class org.graffiti.plugin.io.resources.MyByteArrayOutputStream

getBufferedImage() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.BufferedImageResult

getBufferedImage(Image) - Static method in class org.graffiti.editor.GravistoService

getButton() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TemplateFile

getButton() - Method in class org.graffiti.editor.WarningButton

getButton() - Method in class org.graffiti.plugin.editcomponent.AbstractDialogableEditComponent

Returns the button of the AbstractDialogableEditComponent.

getButton(ExperimentInterface, ExperimentDataInfoPane) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.AbstractAnnotationProvider

getButton(ExperimentInterface, ExperimentDataInfoPane) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.AnnotationProvider

getButtonCount() - Method in class org.graffiti.editor.GraffitiButtonGroup

Returns the number of buttons in the group.

getButtonSize() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOManalysis

getButtonSize() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.launch_gui.LaunchGui

getButtonSize() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.ChangeLabelsAlgorithm

Deprecated.

getBval(int, boolean) - Method in class org.graffiti.plugin.algorithm.ThreadSafeOptions

Returns a stored boolean parameter value.

getByte() - Method in class org.graffiti.attributes.ByteAttribute

Returns the value of this object.

getByte(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getByte(String) - Method in class org.graffiti.attributes.AbstractAttributable

Returns the value of the Attribute at the given path.

getByte(String) - Method in interface org.graffiti.attributes.Attributable

Returns the value of the Attribute at the given path.

getC() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionDatapoint

getCA() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeEntry

getCachedFileName(String, Graph, Algorithm, ObjectRef, ObjectRef) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithm

getCacheURL(URL, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.FileDownloadCache

If the parameter specifies a remote file, it is downloaded and saved at the hard disc drive.

getCacheURL(URL, String, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.CachedWebDownload

If the parameter specifies a remote file, it is downloaded and saved at the hard disc drive.

getCalculationHistoryForMaxR() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.CorrelationResult

getCalendarField() - Method in class org.jfree.chart.axis.DateTickUnit

Returns a field code that can be used with the Calendar class.

getCandleWidth() - Method in class org.jfree.chart.renderer.CandlestickRenderer

Returns the width of each candle.

getCaption() - Method in class org.graffiti.plugin.editcomponent.SingleGraphElementEditComponent

Returns a String suitable for the name column in the name value table.

getCategories() - Method in class org.jfree.chart.plot.CategoryPlot

Returns a list of the categories for the plot.

getCategories() - Method in class org.jfree.chart.plot.CombinedDomainCategoryPlot

Returns an unmodifiable list of the categories contained in all the subplots.

getCategories() - Method in class org.jfree.data.DefaultIntervalCategoryDataset

Returns a list of the categories in the dataset.

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.circle_search.CircleSearchAndLayoutAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.ColorizeAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.DavidTestAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.GrubbsTestAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.ShowStatisticsTab

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.BarabasiAlbertGraphGenerator

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.ErdosRenyiGraphGenerator

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.WattsStrogatzGraphGenerator

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.HammingDistanceAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.inverse_graph.InverseGraphPluginAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.lines_as_substances.LinesToSubstancesAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.NaivePatternFinderAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.ExchangeNodePositionsAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.RatioViewAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.SubstanceRatioCalculationAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.AllPathsSelectionAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.ShortestPathSelectionAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.WeightedShortestPathSelectionAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.MultiDataView

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOManalysis

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMclusterAnalysis

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMclusterAnalysisDoCluster

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMprintDataset

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.commands.TranspathPathwayLoader

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.ImageAssignmentCommand

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.AddDiagramLegendAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.ColorScaleLegendAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.CreateDistanceMatrixAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.ExtractMappingDataAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.RecolorEdgesAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.RemoveMappingDataAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.SetNumericAttributeFromDataAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.alt_id_statistics.AlternativeIDannotationStatistics

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.ApplyAlternativeIdentifiersTo

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.CombineMappingData

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.CreateFuncatGraphAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.ClusterHistogramFisherTest

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateDirectChildrenClustersHistogramAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateGOchildrenAverageDataDiagramAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateGOchildrenClustersHistogramAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateGOchildrenTtestHistogramAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.ProcessHierarchynodesDepOnLeafNodes

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.PruneTreeAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.CreateGOtreeAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.InterpreteGOtermsAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.hierarchies.CreateKEGGOrthologyGraphAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.kegg_reaction.CreateKeggReactionNetworkAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.hierarchy.HierarchyAlgorithms

Deprecated.

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.hierarchy.HierarchyWizard

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.MergeNodes

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.ReplaceDiagramTitleFromAlternativeSubstanceNames

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectCompoundsAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectEdgesAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectEnzymesAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectGenesAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectMapNodesAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectMapTitleNodesAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectNodesWithExperimentalDataAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectReactionsAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.ShowOrHideImageAttributesAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.SplitNodeForSingleMappingData

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.UserMappingAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.CloseAllWindows

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.EvaluateKGML

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.RecreateView

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.XmlDataChartComponent

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKGraffitiView

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.ColorizeSuperGraphAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.CreateOrgSpecificSuperGraphsAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.MergeWindowsAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.SelectWindowsAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate.RotateAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color.SetBackgroundColorAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color.WindowSettings

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.startlayout.StartLayoutAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph.ApplyGraphLayout

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph.ShowLayoutTab

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.CircleLayouterAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.CircleLayouterWithMinimumCrossingsAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.CountCircularCrossingsAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.DotLayoutAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.NullLayoutAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.copy_pattern_layout.CopyPatternLayoutAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_no_overlapp.NoOverlappLayoutAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_reduce_space.ExpandReduceLayouterAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fish_eye.FishEyeLayout

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.graph_to_origin_mover.CenterLayouterAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.graph_to_origin_mover.NoOverlappOfClustersAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement.GridPlacementAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid.GridLayouterAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.no_overlapp_as_tim.NoOverlappLayoutAlgorithmAS

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache.PatternSpringembedder

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.AddRandomClusterInformationAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BendsLaunchGUI

Deprecated.

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BringToFrontOrBackAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BundleParallelEdges

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ClusterGraphLayout

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ClusterIndividualLayout

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ClusterOverviewNetworkLaunchGui

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.CreateClusterGraphAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.CreateHierarchyTree

Deprecated.

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.DuplicateEdge

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.IntroduceBendsAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.IntroduceParallelEdgeBends

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.IntroduceSelfEdgeBends

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.PajekClusterColor

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.RemoveBendsAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.RemoveParallelEdges

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ResetEdgeSourceOrTarget

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ResizeNodesDepDegreeAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SelectClusterAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SetClusterLaunchGui

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ShowClusterGraphAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder3d

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.radial_tree.RadialTreeLayout

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.random.RandomLayouterAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.ArrayLayout

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.GridLayoutAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.ResizeFromMappingCountLayoutAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.MultiTreeLayout

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.RTTreeLayout

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.tree_simple.GraphTreeLayout

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.AddInterestingAttributes

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.CalculateAttribute

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.ComputeAttributesAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup.DeleteNodesAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup.NumberNodesAndEdgesAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.HideOrShowChildNodes

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.HierarchyAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.SelectLeafNodesAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ChangeEdgeStyle

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ChangeElementStyle

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ChangeNodeStyle

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.CopyDataTableAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ExpandSelectionAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ExportDataTableAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.FindReplaceDialog

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.InvertSelectionAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.RemoveSelectedNodesPreserveEdgesAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchAndSelecAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SetToolTipAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SetURLAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.ChangeLabelsAlgorithm

Deprecated.

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.EnrichHiddenLabelsAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.RemoveParenthesisLabels

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.ReplaceLabelAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.LinkSelection

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayReferenceAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayReferenceAutoCreationAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.ppt_exporter.PPTAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.printer.PrintAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.AdditionalIdentifiersAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.ReplaceLabelFromAlternativeSubstanceNames

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.scripting.BeanShellDesktopAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.GraphicExport

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PDFAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SVGAlgorithm

getCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.WebsiteGeneration

getCategory() - Method in class org.graffiti.editor.options.LoadSaveOptionsPane

getCategory() - Method in class org.graffiti.editor.options.ShortcutsOptionPane

getCategory() - Method in class org.graffiti.editor.options.ToolBarOptionPane

getCategory() - Method in class org.graffiti.options.AddonsOptionsPane

getCategory() - Method in interface org.graffiti.options.OptionPane

getCategory() - Method in class org.graffiti.options.OverviewOptionPane

getCategory() - Method in class org.graffiti.options.ParameterOptionPane

getCategory() - Method in class org.graffiti.plugin.algorithm.AbstractAlgorithm

getCategory() - Method in interface org.graffiti.plugin.algorithm.Algorithm

Deprecated.

Please, use getSetCategory(). To put this algorithm into a menu, use getMenuCategory()

getCategory() - Method in interface org.graffiti.plugin.extension.Extension

getCategory() - Method in class org.jfree.chart.annotations.CategoryTextAnnotation

Returns the category.

getCategory() - Method in class org.jfree.chart.axis.CategoryTick

Returns the category.

getCategory() - Method in class org.jfree.chart.entity.CategoryItemEntity

Returns the category.

getCategory() - Method in class org.vanted.plugins.layout.adaptagrams.edgerouting.EdgeRoutingAlgorithm

getCategory() - Method in class org.vanted.plugins.layout.multilevelframework.ForceDirectedLayoutWrapper

getCategory() - Method in class org.vanted.plugins.layout.multilevelframework.MultilevelFrameworkLayout

getCategory() - Method in class org.vanted.plugins.layout.stressminimization.BackgroundExecutionAlgorithm

getCategory() - Method in class org.vanted.plugins.layout.stressminimization.StressMinimizationLayout

getCategory() - Method in class vanted_feature.SelectAlgorithm

Deprecated.

getCategory(int) - Method in class org.jfree.data.DefaultIntervalCategoryDataset

Returns a category key.

getCategoryAnchor() - Method in class org.jfree.chart.annotations.CategoryTextAnnotation

Returns the category anchor point.

getCategoryAnchor() - Method in class org.jfree.chart.axis.CategoryLabelPosition

Returns the item label anchor.

getCategoryBackgroundColorA(Graph, Color) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

getCategoryBackgroundColorB(Graph, Color) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

getCategoryBackgroundColorC(Graph, Color) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

getCategoryCount() - Method in class org.jfree.data.DefaultIntervalCategoryDataset

Returns the number of categories in the dataset.

getCategoryEnd(int, int, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.CategoryAxis

Returns the end coordinate for the specified category.

getCategoryIndex() - Method in class org.jfree.chart.entity.CategoryItemEntity

Returns the category index.

getCategoryJava2DCoordinate(CategoryAnchor, int, int, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.CategoryAxis

Returns the Java 2D coordinate for a category.

getCategoryLabelPositionOffset() - Method in class org.jfree.chart.axis.CategoryAxis

Returns the offset between the axis and the category labels (before label positioning is taken into account).

getCategoryLabelPositions() - Method in class org.jfree.chart.axis.CategoryAxis

Returns the category label position specification (this contains label positioning info for all four possible axis locations).

getCategoryMargin() - Method in class org.jfree.chart.axis.CategoryAxis

Returns the category margin.

getCategoryMiddle(int, int, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.CategoryAxis

Returns the middle coordinate for the specified category.

getCategoryPlot() - Method in class org.jfree.chart.JFreeChart

Returns the plot cast as a CategoryPlot.

getCategoryStart(int, int, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.CategoryAxis

Returns the starting coordinate for the specified category.

getCausingGraphElement() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayWarningInformation

getCausingGraphElements() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayErrorInformation

getCC() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeEntry

getCeilingTickUnit(double) - Method in class org.jfree.chart.axis.StandardTickUnitSource

Returns the tick unit in the collection that is greater than or equal to the specified size.

getCeilingTickUnit(double) - Method in class org.jfree.chart.axis.TickUnits

Returns the tick unit in the collection that is greater than or equal to the specified size.

getCeilingTickUnit(double) - Method in interface org.jfree.chart.axis.TickUnitSource

Returns the tick unit in the collection that is greater than or equal to the specified size.

getCeilingTickUnit(TickUnit) - Method in class org.jfree.chart.axis.StandardTickUnitSource

Returns the tick unit in the collection that is greater than or equal to (in size) the specified unit.

getCeilingTickUnit(TickUnit) - Method in class org.jfree.chart.axis.TickUnits

Returns the tick unit in the collection that is greater than or equal to (in size) the specified unit.

getCeilingTickUnit(TickUnit) - Method in interface org.jfree.chart.axis.TickUnitSource

Returns the tick unit in the collection that is greater than or equal to (in size) the specified unit.

getCellData(int, Integer, Object) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData

getCellDataDate(int, int, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData

getCellDataDateObject(int, int, Date) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData

getCellEditorValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.AbstractCellEditor

getCellRenderer(int, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.MyDataJTable

getCenter(Collection<?>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

Calculates the center of a number of given nodes (other Graph elements are ignored).

getCenter3d(Collection<?>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

getCentralValue() - Method in class org.jfree.data.Range

Returns the central value for the range.

getCF() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeEntry

getChangedObjects() - Method in class org.graffiti.event.TransactionEvent

Returns the Set of objects that have been changed during the transaction.

getChart() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView

getChart() - Method in class org.jfree.chart.ChartMouseEvent

Returns the chart that the mouse event relates to.

getChart() - Method in class org.jfree.chart.ChartPanel

Returns the chart contained in the panel.

getChart() - Method in class org.jfree.chart.demo.IntervalBarChartDemo1

Returns the chart.

getChart() - Method in class org.jfree.chart.event.ChartChangeEvent

Returns the chart that generated the change event.

getChart() - Method in class org.jfree.chart.event.ChartProgressEvent

Returns the chart that generated the change event.

getChart() - Method in class org.jfree.chart.Legend

Returns the chart that this legend belongs to.

getChart(int) - Method in class org.jfree.chart.demo.JFreeChartDemoBase

Returns a chart.

getChart(GraphElement) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartComponent

getChart(GraphElement) - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.GraffitiCharts

getChartArea() - Method in class org.jfree.chart.ChartRenderingInfo

Returns the area in which the chart was drawn.

getChartBackgroundColor(GraphElement) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

getChartBackgroundColor(GraphElement, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

getChartComponent(String, GraphElement) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartComponentManager

getChartComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartComponentManager

getChartHeight() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView

getChartPanel() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyScatterBlock

Returns the scatter block as a component.

getChartPanel() - Method in class org.jfree.chart.ChartFrame

Returns the chart panel for the frame.

getChartRenderingInfo() - Method in class org.jfree.chart.ChartPanel

Returns the chart rendering info from the most recent chart redraw.

getChartStyleFromString(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.GraffitiCharts

getChartTitle(GraphElement, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.XmlDataChartComponent

getChartTitleColor(GraphElement) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

getChartTitleFont(GraphElement) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

getChartWidth() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView

getChildNode(Node, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

getChildPlugins() - Method in class org.graffiti.managers.pluginmgr.PluginDescription

getChildPosition(Dataset) - Method in class org.jfree.data.CombinedDataset

Returns the child position.

getChildren() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.BriteEntry

getChipColor(Number) - Method in class org.jfree.chart.renderer.WaferMapRenderer

Returns the paint for a given chip value.

getChipSpace() - Method in class org.jfree.data.WaferMapDataset

Returns the space to draw between chips.

getChipValue(int, int) - Method in class org.jfree.data.WaferMapDataset

Returns the data value for a chip.

getChipValue(Comparable, Comparable) - Method in class org.jfree.data.WaferMapDataset

Returns the value for a given chip x and y or null.

getChoosenColor(Color) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics

getClass(int) - Method in class qmwi.kseg.som.diagram.AttributsAll

Insert the method's description here.

getClass(int) - Method in class qmwi.kseg.som.diagram.ClassesAll

Insert the method's description here.

getClassIndex() - Method in class qmwi.kseg.som.diagram.ClassesObjectInputVector

Insert the method's description here.

getClassInstance(Class<?>) - Static method in class org.vanted.scaling.vanted.HighDPISupport

Through reflection we get an instance of the specified class, given there is such static field defined.

getClassName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.LookAndFeelWrapper

getClassName(Algorithm) - Method in class org.graffiti.session.Session

Returns the class name of the specified algorithm.

getClassType() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings.MyPluginTreeNode

getClipPath() - Method in class org.jfree.chart.plot.ContourPlot

Returns the clipPath.

getClipX() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams

getClipY() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams

getClose() - Method in class org.jfree.data.OHLCDataItem

Returns the close value.

getClose(int, int) - Method in class org.jfree.data.CombinedDataset

Returns the close-value (as a double primitive) for an item within a series.

getClose(int, int) - Method in class org.jfree.data.DefaultHighLowDataset

Returns the close-value (as a double primitive) for an item within a series.

getClose(int, int) - Method in interface org.jfree.data.HighLowDataset

Returns the close-value (as a double primitive) for an item within a series.

getClose(int, int) - Method in class org.jfree.data.OHLCDataset

Returns the close-value (as a double primitive) for an item within a series.

getClose(int, int) - Method in class org.jfree.data.SubSeriesDataset

Returns the close-value (as a double primitive) for an item within a series.

getCloseTickLine() - Method in class org.jfree.chart.renderer.HighLow

Returns the line for close tick

getCloseValue(int, int) - Method in class org.jfree.data.CombinedDataset

Returns the close-value for the specified series and item.

getCloseValue(int, int) - Method in class org.jfree.data.DefaultHighLowDataset

Returns the close-value for one item in a series.

getCloseValue(int, int) - Method in interface org.jfree.data.HighLowDataset

Returns the y-value for the specified series and item.

getCloseValue(int, int) - Method in class org.jfree.data.OHLCDataset

Returns the close value.

getCloseValue(int, int) - Method in class org.jfree.data.SubSeriesDataset

Returns the close-value for the specified series and item.

getCluster() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.GraphElementHelper

getClusterColor(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttribute

getClusterColors() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttribute

getClusterId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getClusterId() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getClusterID(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getClusterID(GraphElement, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

getClusteringCoefficientDirected(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getClusteringCoefficientUndirected(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getClusterOutlineColor(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttribute

getClusterOutlineColors() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttribute

getClusters(Collection<? extends GraphElement>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getClusterSubGraph(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getCmdFile() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.BSHscriptMenuEntry

Returns the name of the beanshell commando file for this menuitem.

getCmdFile() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.RubyScriptMenuEntry

Returns the name of the beanshell commando file for this menuitem.

getCmdFileSrc() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.BSHscriptMenuEntry

getCollection() - Method in interface org.graffiti.attributes.CollectionAttribute

Returns the map of ids to attributes in the CollectionAttribute.

getCollection() - Method in class org.graffiti.attributes.HashMapAttribute

Returns a cloned map (shallow copy of map: i.e.

getCollection() - Method in class org.graffiti.attributes.LinkedHashMapAttribute

Returns a cloned map (shallow copy of map: i.e.

getCollectionNoClone() - Method in class org.graffiti.attributes.LinkedHashMapAttribute

getColor() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_color.LabelColorAttribute

getColor() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttribute

getColor() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.kgmlColor

getColor() - Method in class org.color.ColorXYZ

getColor() - Method in interface org.graffiti.attributes.ColorSetAndGetSupport

getColor() - Method in class org.graffiti.graphics.ColorAttribute

Comfort function to get a java.awt.Color.

getColor() - Method in class org.graffiti.plugin.parameter.ColorParameter

getColor() - Method in class org.vanted.animation.data.ColorTimePoint

getColor(double) - Method in class org.jfree.chart.ui.ColorPalette

Returns the color associated with a value.

getColor(float, double, Color, Color) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.RecolorEdgesAlgorithm

getColor(float, double, Color, Color) - Static method in class org.Colors

getColor(int) - Method in class org.jfree.chart.ui.ColorPalette

Returns a color.

getColor1ForRowKey(Comparable) - Method in class org.BioStatisticalCategoryDataset

getColor1ForRowKey(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ColorHelper

getColor2ForRowKey(Comparable) - Method in class org.BioStatisticalCategoryDataset

getColor2ForRowKey(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ColorHelper

getColorAttributeValue(Graph, String, Color) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

getColorBar() - Method in class org.jfree.chart.plot.ContourPlot

Returns the colorbar.

getColorBarLocation() - Method in class org.jfree.chart.plot.ContourPlot

Returns the color bar location.

getColorFrom3floatValues0to1(String, Color) - Static method in class org.AttributeHelper

getColorFromAttribute(Attributable, String, String, Color) - Static method in class org.AttributeHelper

getColorFromHex(String) - Static method in class org.color.ColorUtil

getColorFromName(String, Color) - Static method in class org.AttributeHelper

getColorLinear(double) - Method in class org.jfree.chart.ui.ColorPalette

Returns Color by mapping a given value to a linear palette.

getColorLog(double) - Method in class org.jfree.chart.ui.ColorPalette

Returns Color by mapping a given value to a common log palette.

getColorModel() - Method in class org.graffiti.plugins.views.defaults.RoundGradientContext

getColorName(Color) - Static method in class org.AttributeHelper

getColorPalette() - Method in class org.jfree.chart.axis.ColorBar

Returns the color palette.

getColors(int) - Static method in class org.Colors

An array version of Colors.get(int).

getColors(ArrayList<String>, boolean) - Static method in class org.NamedColorSet

getColorXYZ() - Method in class org.color.Color_CIE_Lab

getColumn() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.Annotation

getColumn() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DataColumnHeader

getColumn() - Method in class info.clearthought.layout.TableLayout

Gets the sizes of columns in this layout.

getColumn(int) - Method in class info.clearthought.layout.TableLayout

Gets the width of a single column in this layout.

getColumn(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionReader

getColumn(String) - Method in class qmwi.kseg.som.DataSet

getColumnClass(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.AddonTableModel

getColumnClass(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.AbstractTreeTableModel

getColumnClass(int) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.TreeTableModel

Returns the type for column number column.

getColumnClass(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.TreeTableModelAdapter

getColumnClass(int) - Method in class org.graffiti.plugins.views.matrix.MatrixModel

getColumnClass(int) - Method in class org.jfree.data.TimeSeriesTableModel

Returns the column class in the table model.

getColumnCount() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.AddonTableModel

getColumnCount() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.XlsTableModel

getColumnCount() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.TreeTableModel

Returns the number ofs availible column.

getColumnCount() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.TreeTableModelAdapter

getColumnCount() - Method in class org.graffiti.plugins.views.matrix.MatrixModel

getColumnCount() - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer

Returns the number of columns in the dataset.

getColumnCount() - Method in class org.jfree.data.DefaultCategoryDataset

Returns the number of columns in the table.

getColumnCount() - Method in class org.jfree.data.DefaultIntervalCategoryDataset

Returns the number of categories in the dataset.

getColumnCount() - Method in class org.jfree.data.DefaultKeyedValues2D

Returns the column count.

getColumnCount() - Method in class org.jfree.data.gantt.TaskSeriesCollection

Returns the number of column in the dataset.

getColumnCount() - Method in class org.jfree.data.KeyedObjects2D

Returns the column count.

getColumnCount() - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the number of columns in the table.

getColumnCount() - Method in class org.jfree.data.statistics.DefaultStatisticalCategoryDataset

Returns the number of columns in the table.

getColumnCount() - Method in class org.jfree.data.TimeSeriesTableModel

Returns the number of columns in the table model.

getColumnCount() - Method in interface org.jfree.data.Values2D

Returns the number of columns in the table.

getColumnCount() - Method in class org.jfree.data.XYDatasetTableModel

Gets the number of columns in the model.

getColumnCount() - Method in class qmwi.kseg.som.diagram.DiagrammPaneData

getColumnCount method comment.

getColumnCount() - Method in class qmwi.kseg.som.diagram.TableDataTest

getColumnCount method comment.

getColumnData() - Method in class qmwi.kseg.som.CSV_SOM_dataEntry

getColumnData() - Method in interface qmwi.kseg.som.SOMdataEntry

getColumnData(int) - Method in class qmwi.kseg.som.CSV_SOM_dataEntry

getColumnData(int) - Method in interface qmwi.kseg.som.SOMdataEntry

getColumnIndex(Comparable) - Method in class org.jfree.data.DefaultCategoryDataset

Returns the column index for a given key.

getColumnIndex(Comparable) - Method in class org.jfree.data.DefaultIntervalCategoryDataset

Returns a column index.

getColumnIndex(Comparable) - Method in class org.jfree.data.DefaultKeyedValues2D

Returns the column index for a given key.

getColumnIndex(Comparable) - Method in class org.jfree.data.gantt.TaskSeriesCollection

Returns the column index for a column key.

getColumnIndex(Comparable) - Method in class org.jfree.data.KeyedObjects2D

Returns the column index for a given key.

getColumnIndex(Comparable) - Method in interface org.jfree.data.KeyedValues2D

Returns the column index for a given key.

getColumnIndex(Comparable) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the column index for a given key.

getColumnIndex(Comparable) - Method in class org.jfree.data.statistics.DefaultStatisticalCategoryDataset

Returns the column index for a given key.

getColumnKey(int) - Method in class org.jfree.data.DefaultCategoryDataset

Returns a column key.

getColumnKey(int) - Method in class org.jfree.data.DefaultIntervalCategoryDataset

Returns a column key.

getColumnKey(int) - Method in class org.jfree.data.DefaultKeyedValues2D

Returns the key for a given column.

getColumnKey(int) - Method in class org.jfree.data.gantt.TaskSeriesCollection

Returns a column key.

getColumnKey(int) - Method in class org.jfree.data.KeyedObjects2D

Returns the key for a given column.

getColumnKey(int) - Method in interface org.jfree.data.KeyedValues2D

Returns a column key.

getColumnKey(int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns a column key.

getColumnKey(int) - Method in class org.jfree.data.statistics.DefaultStatisticalCategoryDataset

Returns a column key.

getColumnKeys() - Method in class org.jfree.data.DefaultCategoryDataset

Returns the column keys.

getColumnKeys() - Method in class org.jfree.data.DefaultIntervalCategoryDataset

Returns a list of the categories in the dataset.

getColumnKeys() - Method in class org.jfree.data.DefaultKeyedValues2D

Returns the column keys.

getColumnKeys() - Method in class org.jfree.data.gantt.TaskSeriesCollection

Returns a list of the column keys in the dataset.

getColumnKeys() - Method in class org.jfree.data.KeyedObjects2D

Returns the column keys.

getColumnKeys() - Method in interface org.jfree.data.KeyedValues2D

Returns the column keys.

getColumnKeys() - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the column keys.

getColumnKeys() - Method in class org.jfree.data.statistics.DefaultStatisticalCategoryDataset

Returns the column keys.

getColumnList() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.SubstanceColumnInformation

getColumnName(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.AddonTableModel

getColumnName(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.XlsTableModel

getColumnName(int) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.TreeTableModel

Returns the name for column number column.

getColumnName(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.TreeTableModelAdapter

getColumnName(int) - Method in class org.graffiti.plugins.views.matrix.MatrixModel

getColumnName(int) - Method in class org.jfree.data.TimeSeriesTableModel

Returns the name of a column

getColumnName(int) - Method in class org.jfree.data.XYDatasetTableModel

Returns the column name.

getColumnName(int) - Method in class qmwi.kseg.som.diagram.DiagrammPaneData

Insert the method's description here.

getColumnName(int) - Method in class qmwi.kseg.som.diagram.TableDataTest

Insert the method's description here.

getColumnNameAt(int) - Method in class qmwi.kseg.som.DataSet

getColumnRenderingOrder() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the order in which the columns are rendered.

getColumns() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMplugin

getColumns() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.SubstanceColumnInformation

getColumnsCount() - Method in class org.jfree.data.MatrixSeries

Returns the number of columns in this matrix series.

getComboboxText() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartComponent

getComboboxText() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.GraffitiCharts

getCommandDescription(boolean, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.LoadGraphFileAttributeAction

getCommandDescription(boolean, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.LoadURLattributeAction

getCommandDescription(boolean, boolean) - Method in interface org.graffiti.plugin.actions.URLattributeAction

getCommon() - Method in class org.graffiti.graphics.PortsAttribute

Returns the 'common'-value of the encapsulated ports.

getCommonPath() - Method in enum org.graffiti.event.PathComparisonResult

getCompartment() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartment

getCompartment(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getCompartment(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper

Returns the compartment id of a species

getCompartmentHeadlines(Graph) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartmentHelper

getCompartmentName(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper

getCompatibilityMatrix() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.UllmannSubraphIsomAdjMatrixState

getCompatibleVersion() - Method in class org.graffiti.managers.pluginmgr.PluginDescription

Returns the version for compatibility.

getCompletePaint() - Method in class org.jfree.chart.renderer.GanttRenderer

Returns the paint used to show the percentage complete.

getComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttributeEditor

getComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.LineModeAttributeEditor

getComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartAttributeEditor

getComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartsColumnAttributeEditor

getComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttributeEditor

getComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundImageAttributeEditor

getComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundImagePositionAttributeEditor

getComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings.LabelFontAttributeEditor

getComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style.LabelStyleAttributeEditor

getComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttributeEditor

getComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggGroupPartAttributeEditor

getComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionIdAttributeEditor

getComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionTypeAttributeEditor

getComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSubTypeAttributeEditor

getComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationTypeAttributeEditor

getComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggTypeAttributeEditor

getComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment.LabelAlignmentAttributeEditor

getComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttributeEditor

getComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttributeEditor

getComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.enhanced_attribute_editors.EnhDoubleEditComponent

getComponent() - Method in class org.graffiti.plugin.editcomponent.ComboBoxEditComponent

Returns the ValueEditComponent's JComponent.

getComponent() - Method in class org.graffiti.plugin.editcomponent.EdgeEditComponent

getComponent() - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor

getComponent() - Method in class org.graffiti.plugin.editcomponent.NumberEditComponent

Returns the JComponent associated with this value edit component.

getComponent() - Method in class org.graffiti.plugin.editcomponent.SingleGraphElementEditComponent

Returns the ValueEditComponent's JComponent.

getComponent() - Method in class org.graffiti.plugin.editcomponent.SpinnerEditComponent

Returns the ValueEditComponent's JComponent.

getComponent() - Method in class org.graffiti.plugin.editcomponent.StandardValueEditComponent

Return the component used to display the displayable.

getComponent() - Method in interface org.graffiti.plugin.editcomponent.ValueEditComponent

Returns the ValueEditComponent's JComponent.

getComponent() - Method in class org.graffiti.plugins.editcomponents.defaults.BooleanEditComponent

Returns the JComponent for editing this edit component.

getComponent() - Method in class org.graffiti.plugins.editcomponents.defaults.ColorChooserEditComponent

Returns the ValueEditComponent's JComponent.

getComponent() - Method in class org.graffiti.plugins.editcomponents.defaults.LineModeEditComponent

Returns the ValueEditComponent's JComponent.

getComponent() - Method in class org.graffiti.plugins.editcomponents.defaults.MultiFileSelectionEditComponent

getComponent() - Method in class org.graffiti.plugins.editcomponents.defaults.StringEditComponent

Returns the JComponent of this edit component.

getComponent() - Method in class org.graffiti.plugins.views.defaults.DockingAttributeEditor

getComponent() - Method in class org.graffiti.plugins.views.defaults.GradientFillAttributeEditor

getComponent() - Method in class org.graffiti.plugins.views.defaults.ThicknessAttributeEditor

getComponent() - Method in class org.vanted.plugins.layout.stressminimization.parameters.LandmarkSliderComponent

getComponent() - Method in class org.vanted.plugins.layout.stressminimization.parameters.SliderComponent

getComponentAt(int, int) - Method in class org.graffiti.plugins.views.defaults.GraffitiView

getComponentElementMap() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView

getComponentElementMap() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView

getComponentElementMap() - Method in class org.graffiti.plugin.view.AbstractView

getComponentElementMap() - Method in interface org.graffiti.plugin.view.View

Returns the map mapping GraphElements with GraphElementComponents.

getComponentElementsFromKgmlElement(List<?>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Component

getComponentForElement(GraphElement) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView

getComponentForElement(GraphElement) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView

getComponentForElement(GraphElement) - Method in class org.graffiti.plugin.view.AbstractView

Returns the main GraphElementComponent associated with the given GraphELement.

getComponentForElement(GraphElement) - Method in interface org.graffiti.plugin.view.View

Returns the main GraphElementComponent associated with the given GraphElement.

getComponentOfAnyTypeAt(int, int) - Method in class org.graffiti.plugins.views.defaults.GraffitiView

getComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Entry

getComponents(IndexedNodeSet) - Static method in class org.vanted.indexednodes.IndexedGraphOperations

Get all connected components in the induced `subgraph`

getComposite() - Method in class org.jfree.chart.ClipPath

Returns the composite.

getCompoundImageComponent(JLabel, String, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundImageAttributeEditor

getCompoundImageComponent(JLabel, String, boolean, int, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundImageAttributeEditor

getCondgenotype() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation

getConditionId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getConditionId() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getConditionID() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DataRowExcelExport

getConditionName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getConditionName() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getConditionName(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getConditions(Collection<String>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getConditions(Collection<String>) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getConditionsAsString(ExperimentInterface) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

getCondspecies() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation

getCondtreatment() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation

getConnectedComponents(Collection<Node>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getConnectedComponentsAsCopy(List<Node>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getConnectedComponentsAsCopy(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

builds for all connected components a separate graph and returns them as a collection of graphs

getConnectedGraphElements(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.WeightedDistanceInfo

getConnectedNodes(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

gets the nodes which can be reached by the the specified nodes

getConnectedNodes(Node, boolean, Set<Node>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getConstant() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartment

getConstant() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLParameter

getConstant(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getConstant(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper

Returns the boolean value constant of the species

getConstraintHeadlines(Graph) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLConstraintHelper

getConstraints() - Method in class org.graffiti.plugin.mode.AbstractMode

Returns an array containing the GraphConstraints of the current Mode.

getConstraints() - Method in interface org.graffiti.plugin.mode.Mode

Returns an array containing the GraphConstraints of the current Mode.

getConstraints() - Method in class placement.ActiveSetPlacement

getConstraints() - Method in interface placement.Placement

getConstraints(Component) - Method in class info.clearthought.layout.TableLayout

Gets the constraints of a given component.

getContent(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.DefaultContextMenuManager

getContent(IOurl) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.DefaultContextMenuManager

getContentBetween(String, String, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_editing.DBGETresult

If end == null, get everything from start to the end of line

getContents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.MutableList

getContents() - Method in class org.jfree.chart.demo.resources.DemoResources_de

Returns the array of strings in the resource bundle.

getContents() - Method in class org.jfree.chart.demo.resources.DemoResources_es

Returns the array of strings in the resource bundle.

getContents() - Method in class org.jfree.chart.demo.resources.DemoResources_fr

Returns the array of strings in the resource bundle.

getContents() - Method in class org.jfree.chart.demo.resources.DemoResources_pl

Returns the array of strings in the resource bundle.

getContents() - Method in class org.jfree.chart.demo.resources.DemoResources

Returns the array of strings in the resource bundle.

getContents() - Method in class org.jfree.chart.resources.JFreeChartResources

Returns the array of strings in the resource bundle.

getContents() - Method in class org.jfree.data.resources.DataPackageResources_de

Returns the array of strings in the resource bundle.

getContents() - Method in class org.jfree.data.resources.DataPackageResources_es

Returns the array of strings in the resource bundle.

getContents() - Method in class org.jfree.data.resources.DataPackageResources_fr

Returns the array of strings in the resource bundle.

getContents() - Method in class org.jfree.data.resources.DataPackageResources_pl

Returns the array of strings in the resource bundle.

getContents() - Method in class org.jfree.data.resources.DataPackageResources_ru

Returns the array of strings in the resource bundle.

getContents() - Method in class org.jfree.data.resources.DataPackageResources

Returns the array of strings in the resource bundle.

getContextCommand(MouseEvent, Component, Graph) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.url_attribute_context_commands.URLattributeContextMenuCommandPlugin

getContextCommand(MouseEvent, Component, Graph) - Method in interface org.graffiti.plugin.algorithm.ProvidesDirectMouseClickContextMenu

getContextMenu(MouseEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.DefaultContextMenuManager

getContextMenu(MouseEvent) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.IContextMenuManager

This Method returns a Context Menu.

getContourDataRange() - Method in class org.jfree.chart.plot.ContourPlot

Returns the range for the Contours.

getContourDataRange() - Method in interface org.jfree.chart.plot.ContourValuePlot

Returns the range of data values to be plotted.

getContourDataset() - Method in class org.jfree.chart.plot.ContourPlot

Deprecated.

Use the getDataset() method instead.

getControlValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionDatapoint

getConversionFactor(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper

Returns the conversion factor units of a species

getCoordinate() - Method in class org.graffiti.graphics.CoordinateAttribute

Returns the encapsulated coordinate.

getCoordinate() - Method in class org.graffiti.graphics.NodeGraphicAttribute

Returns the 'coordinate'-value of the encapsulated node.

getCoordinate() - Method in class org.graffiti.graphics.PortAttribute

Returns the 'port'-value of the encapsulated port.

getCoordinates() - Method in class org.graffiti.graphics.ShapeDescriptionAttribute

Gets the x and y coordinates.

getCoordinateSystem() - Method in class org.graffiti.plugins.views.defaults.GraffitiView

getCoordinator() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getCoordinator() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getCoordinator() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

getCoordinator() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader

getCoordinator() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface

getCoordinator() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface

getCoordinatorFromLineNode(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

getCoreLength() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.UllmannSubraphIsomAdjMatrixState

getCorrectGoTermFormat(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.GoProcessing

getCorrelation(Number[], Number[]) - Static method in class org.jfree.data.statistics.Statistics

Calculates the correlation between two datasets.

getCount() - Method in class org.jfree.chart.axis.DateTickUnit

Returns the unit count.

getCount() - Method in class org.jfree.data.statistics.HistogramBin

Returns the number of items in the bin.

getCountAttributs() - Method in class qmwi.kseg.som.diagram.AttributsAll

Insert the method's description here.

getCountAttributs() - Method in class qmwi.kseg.som.diagram.AttributsClass

Insert the method's description here.

getCountAttributs() - Method in class qmwi.kseg.som.diagram.ClassesAll

Insert the method's description here.

getCountAttributs() - Method in class qmwi.kseg.som.diagram.ClassesObject

Insert the method's description here.

getCountAttributs(int) - Method in class qmwi.kseg.som.diagram.AttributsAll

Insert the method's description here.

getCountAttributsNames() - Method in class qmwi.kseg.som.diagram.ClassesAll

Insert the method's description here.

getCountAttributsSelected() - Method in class qmwi.kseg.som.diagram.ClassesAll

Insert the method's description here.

getCountAttributValues(int) - Method in class qmwi.kseg.som.diagram.AttributsAll

Insert the method's description here.

getCountClasses() - Method in class qmwi.kseg.som.diagram.AttributsAll

Insert the method's description here.

getCountClasses() - Method in class qmwi.kseg.som.diagram.ClassesAll

Insert the method's description here.

getCountObjects() - Method in class qmwi.kseg.som.diagram.ClassesClass

Insert the method's description here.

getCountObjects(int) - Method in class qmwi.kseg.som.diagram.ClassesAll

Insert the method's description here.

getCountWeights() - Method in class qmwi.kseg.som.diagram.ClassesNeuron

Insert the method's description here.

getCreationDate() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionReader

getCriticalPaint() - Method in class org.jfree.chart.plot.MeterPlot

Returns the paint used to display the 'critical' range.

getCriticalRange() - Method in class org.jfree.chart.plot.MeterPlot

Returns the critical range for the dial.

getCrosshairX() - Method in class org.jfree.chart.plot.CrosshairState

Get the x-value for the crosshair point.

getCrosshairY() - Method in class org.jfree.chart.plot.CrosshairState

Get the y-value for the crosshair point.

getCSVdata(File, ArrayList<String>, BackgroundTaskStatusProviderSupportingExternalCall) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataFileReader

getCSVline() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation

getCumulativePercentages(KeyedValues) - Static method in class org.jfree.data.DataUtilities

Returns a KeyedValues instance that contains the cumulative percentage values for the data in another KeyedValues instance.

getCumulativeRangeExtent(CategoryDataset) - Static method in class org.jfree.data.DatasetUtilities

Calculates the range of values for a dataset where each item is the running total of the items for the current series.

getCurrentContextMenuItem() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate.RotateAlgorithm

getCurrentContextMenuItem() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color.SetBackgroundColorAlgorithm

getCurrentContextMenuItem() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color.WindowSettings

getCurrentContextMenuItem() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.graph_to_origin_mover.CenterLayouterAlgorithm

getCurrentContextMenuItem() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup.DeleteNodesAlgorithm

getCurrentContextMenuItem() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.link_visualization_legend.LinkVisualizationLegendPlugin

getCurrentContextMenuItem() - Method in interface org.graffiti.plugin.algorithm.ProvidesGeneralContextMenu

This method should be implemented, as that it returns the desired Context-MenuItem for the Plugin.

getCurrentEdgeContextMenuItem(Collection<Edge>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup.DeleteNodesAlgorithm

getCurrentEdgeContextMenuItem(Collection<Edge>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup.NumberNodesAndEdgesAlgorithm

getCurrentEdgeContextMenuItem(Collection<Edge>) - Method in interface org.graffiti.plugin.algorithm.ProvidesEdgeContextMenu

This method should be implemented, as that it returns the desired Context-MenuItem for the Plugin.

getCurrentHandler() - Method in class org.jfree.data.xml.RootHandler

Returns the handler at the top of the stack.

getCurrentLoader() - Static method in class org.graffiti.util.InstanceLoader

getCurrentLoopNumber() - Method in class org.vanted.animation.AnimatorData

getCurrentMaxGraphElementId() - Method in class org.graffiti.graph.AbstractGraph

getCurrentMaxGraphElementId() - Method in interface org.graffiti.graph.Graph

returns current max id of the last added graph element without incrementing it

getCurrentMessage() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings.PluginStatusInfo

getCurrentNodeContextMenuItem(Collection) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement.GridPlacementAlgorithm

getCurrentNodeContextMenuItem(Collection<Node>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.InterpreteParentGOtermsAlgorithm

getCurrentNodeContextMenuItem(Collection<Node>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_reduce_space.ExpandReduceLayouterAlgorithm

getCurrentNodeContextMenuItem(Collection<Node>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup.NumberNodesAndEdgesAlgorithm

getCurrentNodeContextMenuItem(Collection<Node>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.HideOrShowChildNodes

getCurrentNodeContextMenuItem(Collection<Node>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.HierarchyAlgorithm

getCurrentNodeContextMenuItem(Collection<Node>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.SelectLeafNodesAlgorithm

getCurrentNodeContextMenuItem(Collection<Node>) - Method in interface org.graffiti.plugin.algorithm.ProvidesNodeContextMenu

This method should be implemented, as that it returns the desired Context-MenuItem for the Plugin.

getCurrentPage() - Method in class org.FolderPanel

getCurrentPatternGraph() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPatternLayout

For getting the current Pattern Graph.

getCurrentProgress() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings.PluginStatusInfo

getCurrentScenario() - Static method in class scenario.ScenarioService

getCurrentState() - Static method in class org.vanted.scaling.Toolbox

Get the current state of the scaling workflow.

getCurrentStatus() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe.ProgressManager

getCurrentStatusMessage1() - Method in class de.ipk_gatersleben.ag_nw.graffiti.KeggSoapAndPathwayService

getCurrentStatusMessage1() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.HammingCalculator

getCurrentStatusMessage1() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMservice

getCurrentStatusMessage1() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionService

getCurrentStatusMessage1() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeService

getCurrentStatusMessage1() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathService

getCurrentStatusMessage1() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.AllSuperGraphsCreator

getCurrentStatusMessage1() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataFileReader

getCurrentStatusMessage1() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.Experiment2GraphHelper

getCurrentStatusMessage1() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggService

getCurrentStatusMessage1() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.TabKegg

getCurrentStatusMessage1() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyCorrlationFinder

getCurrentStatusMessage1() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.MyClusterGraphBasedReLayoutService

getCurrentStatusMessage1() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.MyNonInteractiveSpringEmb

getCurrentStatusMessage1() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PDFAlgorithm

getCurrentStatusMessage1() - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskStatusProviderSupportingExternalCallImpl

getCurrentStatusMessage1() - Method in interface org.BackgroundTaskStatusProvider

Returns a status message on what is going on.

getCurrentStatusMessage2() - Method in class de.ipk_gatersleben.ag_nw.graffiti.KeggSoapAndPathwayService

getCurrentStatusMessage2() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.HammingCalculator

getCurrentStatusMessage2() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMservice

getCurrentStatusMessage2() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionService

getCurrentStatusMessage2() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeService

getCurrentStatusMessage2() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathService

getCurrentStatusMessage2() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.AllSuperGraphsCreator

getCurrentStatusMessage2() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataFileReader

getCurrentStatusMessage2() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.Experiment2GraphHelper

getCurrentStatusMessage2() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggService

getCurrentStatusMessage2() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.TabKegg

getCurrentStatusMessage2() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyCorrlationFinder

getCurrentStatusMessage2() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.MyClusterGraphBasedReLayoutService

getCurrentStatusMessage2() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.MyNonInteractiveSpringEmb

getCurrentStatusMessage2() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PDFAlgorithm

getCurrentStatusMessage2() - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskStatusProviderSupportingExternalCallImpl

getCurrentStatusMessage2() - Method in interface org.BackgroundTaskStatusProvider

Returns a status message on what is going on.

getCurrentStatusValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.KeggSoapAndPathwayService

getCurrentStatusValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.HammingCalculator

getCurrentStatusValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMservice

getCurrentStatusValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionService

getCurrentStatusValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeService

getCurrentStatusValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathService

getCurrentStatusValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.AllSuperGraphsCreator

getCurrentStatusValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataFileReader

getCurrentStatusValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.Experiment2GraphHelper

getCurrentStatusValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggService

getCurrentStatusValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.TabKegg

getCurrentStatusValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyCorrlationFinder

getCurrentStatusValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.MyClusterGraphBasedReLayoutService

getCurrentStatusValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.MyNonInteractiveSpringEmb

getCurrentStatusValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PDFAlgorithm

getCurrentStatusValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskStatusProviderSupportingExternalCallImpl

getCurrentStatusValue() - Method in interface org.BackgroundTaskStatusProvider

Returns the completion status.

getCurrentStatusValueFine() - Method in class de.ipk_gatersleben.ag_nw.graffiti.KeggSoapAndPathwayService

getCurrentStatusValueFine() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.HammingCalculator

getCurrentStatusValueFine() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMservice

getCurrentStatusValueFine() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionService

getCurrentStatusValueFine() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeService

getCurrentStatusValueFine() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathService

getCurrentStatusValueFine() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.AllSuperGraphsCreator

getCurrentStatusValueFine() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataFileReader

getCurrentStatusValueFine() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.Experiment2GraphHelper

getCurrentStatusValueFine() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggService

getCurrentStatusValueFine() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.TabKegg

getCurrentStatusValueFine() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyCorrlationFinder

getCurrentStatusValueFine() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.MyClusterGraphBasedReLayoutService

getCurrentStatusValueFine() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.MyNonInteractiveSpringEmb

getCurrentStatusValueFine() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PDFAlgorithm

getCurrentStatusValueFine() - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskStatusProviderSupportingExternalCallImpl

getCurrentStatusValueFine() - Method in interface org.BackgroundTaskStatusProvider

Same as getCurrentStatusValue(), but this method should return a finer granted progress value.

getCurrentText() - Method in class org.graffiti.editor.StatusBar

getCurrentVersion() - Static method in class org.vanted.BuildInfo

Gets the current Vanted version, as specified in the build file.

getCursor() - Method in class org.jfree.chart.axis.AxisState

Returns the cursor position.

getCustomDataFlavor() - Method in class net.iharder.dnd.TransferableObject

Returns the custom DataFlavor associated with the encapsulated object or null if the TransferableObject.Fetcher constructor was used without passing a Class.

getCustomizedLabel(JLabel) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.WorkflowHelper

Deprecated.

getCustomTarget() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams

getCycleBound() - Method in class org.jfree.chart.axis.CyclicNumberAxis

The cycle bound is defined as the higest value x such that "offset + period * i = x", with i and integer and x < range.getUpperBound() This is the value which is at both ends of the axis : x...up|low...x The values from x to up are the valued in the current cycle.

getDashArray() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.LineModeSetting

getDashArray() - Method in class org.graffiti.graphics.Dash

Returns the dashArray.

getDashArray() - Method in class org.graffiti.graphics.LineModeAttribute

Returns the dashArray of the encapsulated Dash.

getDashInfo(Edge) - Static method in class org.AttributeHelper

getDashPhase() - Method in class org.graffiti.graphics.Dash

Returns the dashPhase.

getDashPhase() - Method in class org.graffiti.graphics.LineModeAttribute

Returns the dashPhase of the encapsulated Dash.

getData() - Method in class org.jfree.chart.plot.CompassPlot

Returns the dataset.

getData() - Method in class org.jfree.chart.plot.ThermometerPlot

Deprecated.

Use getDataset() instead.

getData() - Method in class qmwi.kseg.som.DataSet

getDataArea() - Method in class org.jfree.chart.plot.PlotRenderingInfo

Returns the plot's data area (in Java2D space).

getDataAreaRatio() - Method in class org.jfree.chart.plot.Plot

Returns the data area ratio.

getDatabase() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getDatabase() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getDatabase() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader

getDatabase() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface

getDatabaseId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader

getDatabaseId() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface

getDataExtractOrder() - Method in class org.jfree.chart.plot.MultiplePiePlot

Returns the data extract order (by row or by column).

getDataImageNodes(Document, Integer) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

getDataInScrollbars(HashMap<Integer, String>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData

getDataItem(int) - Method in class org.jfree.data.time.TimePeriodValues

Returns one data item for the series.

getDataItem(int) - Method in class org.jfree.data.time.TimeSeries

Returns a data item for the series.

getDataItem(int) - Method in class org.jfree.data.XYSeries

Return the data item with the specified index.

getDataItem(RegularTimePeriod) - Method in class org.jfree.data.time.TimeSeries

Returns the data item for a specific period.

getDataList() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample

getDataList() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface

getDataList(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

getDataMappings() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.GraphElementHelper

getDataMappings() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getDataNetworkNodes(Document, Integer) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

getDataNodes(Document, Integer) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

getDataPair(int) - Method in class org.jfree.data.time.TimeSeries

Deprecated.

Use getDataItem(int).

getDataPair(int) - Method in class org.jfree.data.XYSeries

Deprecated.

Use getDataItem(index).

getDataPair(RegularTimePeriod) - Method in class org.jfree.data.time.TimeSeries

Deprecated.

Use getDataItem(RegularTimePeriod).

getDataPointCount(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getDataPointCount(boolean) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getDataPoints() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionDataset

getDataPoints(boolean, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getDataPoints(boolean, boolean) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getDataRange(ValueAxis) - Method in class org.jfree.chart.plot.CategoryPlot

Returns the range of data values that will be plotted against the range axis.

getDataRange(ValueAxis) - Method in class org.jfree.chart.plot.CombinedDomainXYPlot

Returns the range for the axis.

getDataRange(ValueAxis) - Method in class org.jfree.chart.plot.CombinedRangeCategoryPlot

Returns the range for the axis.

getDataRange(ValueAxis) - Method in class org.jfree.chart.plot.CombinedRangeXYPlot

Returns the range for the axis.

getDataRange(ValueAxis) - Method in class org.jfree.chart.plot.ContourPlot

Returns the range for an axis.

getDataRange(ValueAxis) - Method in class org.jfree.chart.plot.FastScatterPlot

Returns the range of data values to be plotted along the axis.

getDataRange(ValueAxis) - Method in class org.jfree.chart.plot.PolarPlot

Returns the range for the specified axis.

getDataRange(ValueAxis) - Method in class org.jfree.chart.plot.ThermometerPlot

Returns the data range.

getDataRange(ValueAxis) - Method in interface org.jfree.chart.plot.ValueAxisPlot

Returns the data range that should apply for the specified axis.

getDataRange(ValueAxis) - Method in class org.jfree.chart.plot.XYPlot

Returns the range for the specified axis.

getDataset() - Method in class org.jfree.chart.entity.CategoryItemEntity

Returns the datset this entity refers to.

getDataset() - Method in class org.jfree.chart.entity.PieSectionEntity

Returns the datset this entity refers to.

getDataset() - Method in class org.jfree.chart.entity.XYItemEntity

Returns the dataset this entity refers to.

getDataset() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the primary dataset for the plot.

getDataset() - Method in class org.jfree.chart.plot.ContourPlot

Returns the primary dataset for the plot.

getDataset() - Method in class org.jfree.chart.plot.MeterPlot

Returns the primary dataset for the plot.

getDataset() - Method in class org.jfree.chart.plot.PiePlot

Returns the dataset.

getDataset() - Method in class org.jfree.chart.plot.PolarPlot

Returns the primary dataset for the plot.

getDataset() - Method in class org.jfree.chart.plot.ThermometerPlot

Returns the primary dataset for the plot.

getDataset() - Method in class org.jfree.chart.plot.WaferMapPlot

Returns the dataset

getDataset() - Method in class org.jfree.chart.plot.XYPlot

Returns the primary dataset for the plot.

getDataset() - Method in class org.jfree.data.DatasetChangeEvent

Returns the dataset that generated the event.

getDataset() - Method in class org.jfree.data.xml.CategoryDatasetHandler

Returns the dataset.

getDataset() - Method in class org.jfree.data.xml.PieDatasetHandler

Returns the dataset.

getDataset(int) - Method in class org.jfree.chart.plot.CategoryPlot

Returns a dataset.

getDataset(int) - Method in class org.jfree.chart.plot.XYPlot

Returns a dataset.

getDataset(File) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.MAGEprocessor

getDataSet(boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMplugin

getDataset2offsetOfMaxOrMinR() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.CorrelationResult

getDatasetCount() - Method in class org.jfree.chart.plot.XYPlot

Returns the number of datasets.

getDatasetGroup() - Method in class org.jfree.chart.plot.Plot

Returns the dataset group for the plot (not currently used).

getDatasetRenderingOrder() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the dataset rendering order.

getDatasetRenderingOrder() - Method in class org.jfree.chart.plot.XYPlot

Returns the dataset rendering order.

getDataSetSize() - Method in class qmwi.kseg.som.DataSet

getDatasetTable() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getDatasetTable() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionConverter

getDataTimePoints(GraphElement, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

getDataValue() - Method in class org.vanted.animation.data.TimePoint

getDataVolumeNodes(Document, Integer) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

getDate() - Method in class org.jfree.chart.axis.DateTick

Returns the date.

getDate() - Method in class org.jfree.chart.axis.SegmentedTimeline.Segment

Returns a Date that represents the reference point for this segment.

getDate() - Method in class org.jfree.data.OHLCDataItem

Returns the date.

getDate(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.RSSFeedManager

getDate(long) - Method in class org.jfree.chart.axis.SegmentedTimeline

Converts a millisecond value into a Date object.

getDateFormat() - Method in class org.jfree.chart.labels.AbstractCategoryItemLabelGenerator

Returns the date formatter.

getDateFormatOverride() - Method in class org.jfree.chart.axis.DateAxis

Returns the date format override.

getDateFromString(String) - Static method in class org.AttributeHelper

getDateString(Date) - Static method in class org.AttributeHelper

If date is null, the current date is used!

getDay() - Method in class org.jfree.data.time.Hour

Returns the day in which this hour falls.

getDayOfMonth() - Method in class org.jfree.data.time.Day

Returns the day of the month.

getDayOfMonth() - Method in class org.jfree.data.time.Hour

Returns the day-of-the-month in which this hour falls.

getDbLinkId2Values() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KoEntry

getDbname() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggDatabases

getDE() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeEntry

getDeactivatedAddons() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.AddonManagerPlugin

getDecimalFormat(String) - Static method in class org.ErrorMsg

getDecimalFormat(String) - Static method in class org.jfree.chart.axis.NumberAxis

getDecimalFormat(String) - Static method in class org.jfree.chart.axis.StandardTickUnitSource

getDecimalFormat(String) - Static method in class org.jfree.chart.axis.TickUnits

getDecimalFormat(String) - Static method in class org.jfree.chart.labels.StandardContourToolTipGenerator

getDef() - Method in class org.vanted.plugins.layout.stressminimization.parameters.SliderOptions

getDefaultAttributeDescriptionFor(String, String, Attribute) - Static method in class org.AttributeHelper

getDefaultAttributeIconFor(String) - Static method in class org.AttributeHelper

getDefaultColor() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttribute

getDefaultEnzymeColor() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggService

getDefaultEventIndex() - Method in class net.iharder.dnd.FileDropBeanBeanInfo

A bean may have a "default" event that is the event that will mostly commonly be used by human's when using the bean.

getDefaultFont() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttribute

getDefaultGraphicsAttributeForEdge(Color, Color, boolean) - Static method in class org.AttributeHelper

getDefaultGraphicsAttributeForKeggNode(double, double) - Static method in class org.AttributeHelper

getDefaultGraphicsAttributeForNode(double, double) - Static method in class org.AttributeHelper

getDefaultGraphicsAttributeForNode(Vector2d) - Static method in class org.AttributeHelper

getDefaultLinesVisible() - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer

Returns the default 'lines visible' attribute.

getDefaultParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartAttributeComponent

getDefaultParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.IPK_MegaMoveTool

override this method, which is already implemented in the superclass This must be done to clear the parameter list again, because this class would have the same parameters than the super class but they wouldn't do anything here and confuse the user

getDefaultParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKGraffitiView

getDefaultParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.RimasTab

getDefaultParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.TabMetaCrop

getDefaultParameters() - Method in interface org.graffiti.options.PreferencesInterface

On first start or on reset there will be no preferences available.

getDefaultParameters() - Method in class org.graffiti.plugins.attributecomponents.simplelabel.LabelComponent

getDefaultParameters() - Method in class org.graffiti.plugins.modes.defaults.MegaMoveTool

getDefaultParameters() - Method in class org.vanted.scaling.vanted.HighDPISupport

getDefaultParameters() - Method in class org.vanted.updater.ScanForUpdate

getDefaultParameters() - Method in class org.vanted.VantedPreferences

getDefaultPropertyIndex() - Method in class net.iharder.dnd.FileDropBeanBeanInfo

A bean may have a "default" property that is the property that will mostly commonly be initially chosen for update by human's who are customizing the bean.

getDefaultSearchFilter(String) - Static method in class org.FolderPanel

getDefaultShapesFilled() - Method in class org.jfree.chart.renderer.LineAndShapeRenderer

Returns the default 'shape filled' attribute.

getDefaultShapesFilled() - Method in class org.jfree.chart.renderer.StandardXYItemRenderer

Returns the default 'shape filled' attribute.

getDefaultShapesFilled() - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer

Returns the default 'shape filled' attribute.

getDefaultShapesVisible() - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer

Returns the default 'shape visible' attribute.

getDefaultValue(int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttribute

getDefaultValue(Collection<String>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttribute

getDefaultView() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKDefaultView

getDefaultView() - Method in class org.graffiti.editor.MainFrame

Returns the defaultView.

getDefaultView() - Method in class org.graffiti.managers.DefaultViewManager

getDefaultView() - Method in interface org.graffiti.managers.ViewManager

getDefaultView() - Method in interface org.graffiti.plugin.GenericPlugin

getDefaultView() - Method in class org.graffiti.plugin.GenericPluginAdapter

getDefinedBarCount() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttribute

getDefinedClusterColorCount() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttribute

getDefinition() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.BriteHierarchy

getDefinition() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.OrganismEntry

getDefStr() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.GOinformation

getDegree() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getDegree() - Method in class org.graffiti.graph.AdjListNode

getDegree() - Method in interface org.graffiti.graph.Node

Returns the degree of a node

getDelayFunction() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper

getDeletePath() - Method in class org.graffiti.attributes.AttributeDescription

getDelimiter() - Static method in class org.graffiti.plugin.XMLHelper

Returns a string used to separate XML elements for better readability.

getDependencies() - Method in class org.graffiti.managers.pluginmgr.PluginDescription

Returns the dependencies.

getDependencies() - Method in interface org.graffiti.plugin.GenericPlugin

Returns the array containing the names of the plugin classes the current plugin depends on.

getDependencies() - Method in class org.graffiti.plugin.GenericPluginAdapter

Returns the array containing the names of the plugin classes the current plugin depends on.

getDependency() - Method in exception org.graffiti.managers.pluginmgr.PluginManagerException

Returns the dependency.

getDependentGraphElementComponents() - Method in class org.graffiti.plugins.views.defaults.AbstractGraphElementComponent

getDependentParameters() - Method in class org.graffiti.plugin.parameter.BooleanParameter

getDepth(Node, double, boolean) - Static method in class org.AttributeHelper

getDepthFactor() - Method in class org.jfree.chart.plot.PiePlot3D

The depth factor for the chart.

getDepthOffset() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.TreeContainer

getDesc() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.RSSFeedManager

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.Addon

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.circle_search.CircleSearchAndLayoutAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping.DataMapping

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.ColorizeAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.DavidTestAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.GrubbsTestAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.BarabasiAlbertGraphGenerator

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.ErdosRenyiGraphGenerator

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.WattsStrogatzGraphGenerator

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.lines_as_substances.LinesToSubstancesAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.RatioViewAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.SubstanceRatioCalculationAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.ShortestPathSelectionAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.WeightedShortestPathSelectionAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.MultiDataView

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMclusterAnalysisDoCluster

getDescription() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.FileDownloadStatusInformationProvider

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionService

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggAPIServiceHelper

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeService

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathService

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.ImageAssignmentCommand

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.AddDiagramLegendAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.ColorScaleLegendAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.CreateDistanceMatrixAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.ExtractMappingDataAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.SetNumericAttributeFromDataAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.alt_id_statistics.AlternativeIDannotationStatistics

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.CombineMappingData

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.CreateFuncatGraphAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.ClusterHistogramFisherTest

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateDirectChildrenClustersHistogramAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateGOchildrenAverageDataDiagramAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateGOchildrenClustersHistogramAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateGOchildrenTtestHistogramAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.PruneTreeAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.InterpreteGOtermsAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.hierarchies.CreateKEGGOrthologyGraphAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.hierarchy.HierarchyWizard

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.MergeNodes

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectEdgesAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectNodesWithExperimentalDataAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.SplitNodeForSingleMappingData

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.ColorizeSuperGraphAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.MergeWindowsAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate.RotateAlgorithm

getDescription() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.EntryType

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayErrorInformation

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph.ApplyGraphLayout

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.DotLayoutAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.NullLayoutAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.connected_components.ConnectedComponentLayout

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_no_overlapp.NoOverlappLayoutAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache.PatternSpringembedder

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BundleParallelEdges

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ClusterGraphLayout

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ClusterIndividualLayout

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.DuplicateEdge

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.IntroduceBendsAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.IntroduceParallelEdgeBends

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.IntroduceSelfEdgeBends

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.PajekClusterColor

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.RemoveParallelEdges

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ResetEdgeSourceOrTarget

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SetClusterInfoAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SortIntoCluster

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder3d

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.ArrayLayout

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.MultiTreeLayout

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.RTTreeLayout

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.AddInterestingAttributes

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.CalculateAttribute

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.HideOrShowChildNodes

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.CopyDataTableAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ExportDataTableAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.RemoveSelectedNodesPreserveEdgesAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SetToolTipAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SetURLAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.EnrichHiddenLabelsAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.RemoveParenthesisLabels

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.ReplaceLabelAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.RestoreLabelAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayReferenceAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayReferenceAutoCreationAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.ppt_exporter.PPTAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.AdditionalIdentifiersAlgorithm

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.ReplaceLabelFromAlternativeSubstanceNames

getDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithm

getDescription() - Method in class org.graffiti.attributes.AbstractAttribute

Returns a description for this attribute.

getDescription() - Method in class org.graffiti.core.GenericFileFilter

The description of this filter.

getDescription() - Method in class org.graffiti.managers.GravistoFileFilter

getDescription() - Method in class org.graffiti.managers.pluginmgr.DefaultPluginEntry

Returns the description of the plugin.

getDescription() - Method in class org.graffiti.managers.pluginmgr.PluginDescription

Returns the description.

getDescription() - Method in interface org.graffiti.managers.pluginmgr.PluginEntry

Returns the plugin description of this entry.

getDescription() - Method in class org.graffiti.managers.pluginmgr.PluginFileFilter

getDescription() - Method in class org.graffiti.plugin.algorithm.AbstractAlgorithm

The algorithm description.

getDescription() - Method in interface org.graffiti.plugin.algorithm.Algorithm

getDescription() - Method in enum org.graffiti.plugin.algorithm.Category

getDescription() - Method in interface org.graffiti.plugin.Displayable

Returns the short description of this object.

getDescription() - Method in class org.graffiti.plugin.parameter.AbstractSingleParameter

Returns the description of the parameter.

getDescription() - Method in class org.graffiti.plugin.parameter.EnumParameter

getDescription() - Method in class org.jfree.data.gantt.Task

Returns the task description.

getDescription() - Method in class org.jfree.data.Series

Returns a description of the series.

getDescription() - Method in class org.vanted.plugins.layout.adaptagrams.edgerouting.EdgeRoutingAlgorithm

getDescription() - Method in interface org.vanted.plugins.layout.multilevelframework.Describable

getDescription() - Method in class org.vanted.plugins.layout.multilevelframework.ForceDirectedLayoutWrapper

getDescription() - Method in class org.vanted.plugins.layout.multilevelframework.MultilevelFrameworkLayout

getDescription() - Method in class org.vanted.plugins.layout.multilevelframework.RandomMerger

getDescription() - Method in class org.vanted.plugins.layout.multilevelframework.RandomPlacer

getDescription() - Method in class org.vanted.plugins.layout.multilevelframework.SolarMerger

getDescription() - Method in class org.vanted.plugins.layout.multilevelframework.SolarPlacer

getDescription() - Method in class org.vanted.plugins.layout.stressminimization.BackgroundExecutionAlgorithm

getDescription() - Method in class org.vanted.plugins.layout.stressminimization.StressMinimizationLayout

getDescription(URLAttribute, boolean, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttributeEditor

getDescriptionComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.SubstanceRatioCalculationAlgorithm

getDescriptionComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.ClusterHistogramFisherTest

getDescriptionComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateGOchildrenClustersHistogramAlgorithm

getDescriptionComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateGOchildrenTtestHistogramAlgorithm

getDescriptionComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ClusterGraphLayout

getDescriptionComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.RemoveSelectedNodesPreserveEdgesAlgorithm

getDescriptionComponent() - Method in interface org.graffiti.plugin.algorithm.AlgorithmWithComponentDescription

getDescriptionDataFromUser() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionConverter

getDesiredCoordinatorValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionConverter

getDesiredExperimentName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionConverter

getDesiredMeasurementUnit() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionConverter

getDesiredNodeCombinations(HashMap<Entry, Node>, Collection<Entry>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation

getDesiredNodeCombinations(HashMap<Entry, Node>, Collection<Entry>, Collection<Relation>, Collection<NodeCombination>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Reaction

getDesiredTimeUnit() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionConverter

getDesktop() - Method in class org.graffiti.editor.MainFrame

getDetachedFrames() - Method in class org.graffiti.editor.MainFrame

getDetachedFrames() - Method in class org.graffiti.plugins.views.defaults.GraffitiView

getDetail() - Method in class org.graffiti.plugin.io.resources.IOurl

getDetectionColumn() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.TextFileColumnInformation

getDI() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeEntry

getDialBackgroundPaint() - Method in class org.jfree.chart.plot.MeterPlot

Returns the paint for the dial background.

getDialog() - Method in class org.graffiti.plugin.editcomponent.AbstractDialogableEditComponent

Returns the dialog of this AbstractDialogableEditComponent.

getDialOutlinePaint() - Method in class org.jfree.chart.plot.MeterPlot

Returns the dial outline paint.

getDialShape() - Method in class org.jfree.chart.plot.MeterPlot

Returns the dial shape.

getDialType() - Method in class org.jfree.chart.plot.MeterPlot

Deprecated.

Use getDialShape().

getDict() - Method in class org.vanted.plugins.layout.stressminimization.parameters.SliderOptions

getDifferencesToCentroids() - Method in class qmwi.kseg.som.CSV_SOM_dataEntry

getDifferencesToCentroids() - Method in interface qmwi.kseg.som.SOMdataEntry

getDimension() - Method in class org.graffiti.graphics.DimensionAttribute

Returns the Dimension of the attribute.

getDimension() - Method in class org.graffiti.graphics.NodeGraphicAttribute

Returns the 'dimension'-value of the encapsulated node.

getDirectChildNodes(List<Node>) - Method in interface org.graffiti.graph.NodeHierarchy

getDirectChildNodes(Node) - Method in interface org.graffiti.graph.NodeHierarchy

getDirectedInEdges() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getDirectedInEdges() - Method in class org.graffiti.graph.AbstractNode

Returns a collection containing the directed, ingoing edges of the Node.

getDirectedInEdges() - Method in interface org.graffiti.graph.Node

Returns a collection containing the directed ingoing edges of the Node.

getDirectedInEdgesIterator() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getDirectedInEdgesIterator() - Method in class org.graffiti.graph.AdjListNode

Returns an iterator containing the directed ingoing edges of the Node.

getDirectedInEdgesIterator() - Method in interface org.graffiti.graph.Node

Returns an iterator containing the directed ingoing edges of the Node.

getDirectedOutEdges() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getDirectedOutEdges() - Method in class org.graffiti.graph.AbstractNode

Returns a collection containing the directed outgoing edges of the Node.

getDirectedOutEdges() - Method in interface org.graffiti.graph.Node

Returns a collection containing the outgoing directed edges of the Node.

getDirectedOutEdgesIterator() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getDirectedOutEdgesIterator() - Method in class org.graffiti.graph.AdjListNode

Returns an iterator containing the outgoing directed edges of the Node.

getDirectedOutEdgesIterator() - Method in interface org.graffiti.graph.Node

Returns an iterator containing the outgoing directed edges of the Node.

getDirection() - Method in class org.jfree.chart.plot.PiePlot

Returns the direction in which the pie sections are drawn (clockwise or anti-clockwise).

getDirectionCode(double) - Method in class org.jfree.chart.axis.CompassFormat

Returns a string representing the direction.

getDirectoryFromUser(String) - Static method in class org.OpenFileDialogService

getDirectParentNodes(List<Node>) - Method in interface org.graffiti.graph.NodeHierarchy

getDirectParentNodes(Node) - Method in interface org.graffiti.graph.NodeHierarchy

getDirectParents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.GOinformation

getDiscardedRowIDs() - Static method in class org.graffiti.plugins.inspectors.defaults.DefaultEditPanel

getDismissDelay() - Method in class org.jfree.chart.ChartPanel

Returns the dismissal tooltip delay value used inside this chart panel.

getDisplayable() - Method in class org.graffiti.plugin.editcomponent.AbstractValueEditComponent

Returns the Attribute instance the current ValueEditComponent contains.

getDisplayable() - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor

getDisplayable() - Method in interface org.graffiti.plugin.editcomponent.ValueEditComponent

Returns the Displayable instance the current ValueEditComponent contains.

getDisplayName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.MyPathWay

getDisplayName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.MyPathWay

getDisplaySeriesLines() - Method in class org.jfree.chart.StandardLegend

Returns a flag that controls whether or not the legend displays the series line stroke.

getDisplaySeriesShapes() - Method in class org.jfree.chart.StandardLegend

Returns a flag that controls whether or not the legend displays the series shapes.

getDistance(double, double, Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.CircleLayouterAlgorithm

getDistanceSubset(Collection<Entry>, Node, HashMap<Entry, Node>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Reaction

getDividerLocation() - Method in class org.graffiti.editor.JMyProgressSplitPane

getDocking() - Method in class org.graffiti.graphics.EdgeGraphicAttribute

Returns the 'docking'-value of the encapsulated edge.

getDocument() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ProjectEntity

Deprecated.

getDocument(InputStream) - Static method in class org.graffiti.plugin.XMLHelper

getDocumentData() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataInfoPane

getDocumentData() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ProjectEntity

getDocumentFromXMLstring(String) - Static method in class org.graffiti.plugin.XMLHelper

getDocuments(ExperimentInterface) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

<experimentdata> <experiment experimentid="-1"> <experimentname>Gluthation</experimentname> <remark>SXD plants</remark> <coordinator>Mohammad Hajirezaei</coordinator> <excelfileid/> <importusername/> <importdate>Tue Mar 10 11:39:36 CET 2009</importdate> <startdate>Sun Jan 18 00:00:00 CET 2004</startdate> <measurements>92</measurements> <imagefiles>0</imagefiles> <sizekb>0</sizekb> </experiment> <measurements> <substance id="column 6" name="Cys"> ...

getDocuments(ExperimentInterface, BackgroundTaskStatusProviderSupportingExternalCall, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

getDomainAxis() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the domain axis for the plot.

getDomainAxis() - Method in class org.jfree.chart.plot.ContourPlot

Returns the domain axis for the plot.

getDomainAxis() - Method in class org.jfree.chart.plot.FastScatterPlot

Returns the domain axis for the plot.

getDomainAxis() - Method in class org.jfree.chart.plot.XYPlot

Returns the domain axis for the plot.

getDomainAxis(int) - Method in class org.jfree.chart.plot.CategoryPlot

Returns a domain axis.

getDomainAxis(int) - Method in class org.jfree.chart.plot.XYPlot

Returns a domain axis.

getDomainAxisCount() - Method in class org.jfree.chart.plot.XYPlot

Returns the number of domain axes.

getDomainAxisEdge() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the domain axis edge.

getDomainAxisEdge() - Method in class org.jfree.chart.plot.XYPlot

Returns the edge for the primary domain axis (taking into account the plot's orientation.

getDomainAxisEdge(int) - Method in class org.jfree.chart.plot.CategoryPlot

Returns the edge for a domain axis.

getDomainAxisEdge(int) - Method in class org.jfree.chart.plot.XYPlot

Returns the edge for a domain axis.

getDomainAxisForDataset(int) - Method in class org.jfree.chart.plot.CategoryPlot

Returns the domain axis for a dataset.

getDomainAxisForDataset(int) - Method in class org.jfree.chart.plot.XYPlot

Returns the domain axis for a dataset.

getDomainAxisLocation() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the domain axis location.

getDomainAxisLocation() - Method in class org.jfree.chart.plot.XYPlot

Returns the location of the primary domain axis.

getDomainAxisLocation(int) - Method in class org.jfree.chart.plot.CategoryPlot

Returns the location for a domain axis.

getDomainAxisLocation(int) - Method in class org.jfree.chart.plot.XYPlot

Returns the location for a domain axis.

getDomainAxisPropertyEditPanel() - Method in class org.jfree.chart.ui.PlotPropertyEditPanel

Returns a reference to the panel for editing the properties of the domain axis.

getDomainCrosshairPaint() - Method in class org.jfree.chart.plot.ContourPlot

Returns the domain crosshair color.

getDomainCrosshairPaint() - Method in class org.jfree.chart.plot.XYPlot

Returns the domain crosshair color.

getDomainCrosshairStroke() - Method in class org.jfree.chart.plot.ContourPlot

Returns the Stroke used to draw the crosshair (if visible).

getDomainCrosshairStroke() - Method in class org.jfree.chart.plot.XYPlot

Returns the Stroke used to draw the crosshair (if visible).

getDomainCrosshairValue() - Method in class org.jfree.chart.plot.ContourPlot

Returns the domain crosshair value.

getDomainCrosshairValue() - Method in class org.jfree.chart.plot.XYPlot

Returns the domain crosshair value.

getDomainDescription() - Method in class org.jfree.data.time.TimePeriodValues

Returns the domain description.

getDomainDescription() - Method in class org.jfree.data.time.TimeSeries

Returns the domain description.

getDomainExtent(Dataset) - Static method in class org.jfree.data.DatasetUtilities

Returns the range of values in the domain for the dataset.

getDomainGridlinePaint() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the paint used to draw grid-lines against the domain axis.

getDomainGridlinePaint() - Method in class org.jfree.chart.plot.FastScatterPlot

Returns the paint for the grid lines (if any) plotted against the domain axis.

getDomainGridlinePaint() - Method in class org.jfree.chart.plot.XYPlot

Returns the paint for the grid lines (if any) plotted against the domain axis.

getDomainGridlinePosition() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the position used for the domain gridlines.

getDomainGridlineStroke() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the stroke used to draw grid-lines against the domain axis.

getDomainGridlineStroke() - Method in class org.jfree.chart.plot.FastScatterPlot

Returns the stroke for the grid-lines (if any) plotted against the domain axis.

getDomainGridlineStroke() - Method in class org.jfree.chart.plot.XYPlot

Returns the stroke for the grid-lines (if any) plotted against the domain axis.

getDomainIsPointsInTime() - Method in class org.jfree.data.time.TimePeriodValuesCollection

Returns a flag that controls whether the domain is treated as 'points in time'.

getDomainIsPointsInTime() - Method in class org.jfree.data.time.TimeSeriesCollection

Returns a flag that controls whether the domain is treated as 'points in time'.

getDomainIsPointsInTime() - Method in class org.jfree.data.time.TimeTableXYDataset

Returns a flag that controls whether the domain is treated as 'points in time'.

getDomainMarkers(int, Layer) - Method in class org.jfree.chart.plot.XYPlot

Returns a collection of domain markers for a particular renderer and layer.

getDomainMarkers(Layer) - Method in class org.jfree.chart.plot.XYPlot

Returns the list of domain markers (read only) for the specified layer.

getDomainRange() - Method in class org.jfree.chart.demo.SampleXYDataset2

Returns the range of values in the domain.

getDomainRange() - Method in class org.jfree.data.CategoryTableXYDataset

getDomainRange() - Method in class org.jfree.data.DefaultTableXYDataset

getDomainRange() - Method in interface org.jfree.data.DomainInfo

Returns the range of the values in this dataset's domain.

getDomainRange() - Method in class org.jfree.data.time.DynamicTimeSeriesCollection

Returns the range of values for the domain.

getDomainRange() - Method in class org.jfree.data.time.TimePeriodValuesCollection

Returns the range of the values in the series domain.

getDomainRange() - Method in class org.jfree.data.time.TimeSeriesCollection

Returns the range of the values in the series domain.

getDomainRange() - Method in class org.jfree.data.time.TimeTableXYDataset

Returns the range of the values in this dataset's domain.

getDomainRange() - Method in class org.jfree.data.XYSeriesCollection

Returns the range of the dataset on the domain.

getDomainTickBandPaint() - Method in class org.jfree.chart.plot.XYPlot

Returns the paint used for the domain tick bands.

getDomainUnits() - Method in class org.BioStatisticalCategoryDataset

getDOMfromJDOM(Document) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.JDOM2DOM

getDouble() - Method in class org.graffiti.attributes.DoubleAttribute

Returns the value of this attribute wrapped in an Double object.

getDouble() - Method in class org.graffiti.plugin.algorithm.ThreadSafeOptions

getDouble() - Method in class org.graffiti.plugin.parameter.DoubleParameter

Returns the value of this parameter as a Double.

getDouble(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getDouble(String) - Method in class org.graffiti.attributes.AbstractAttributable

Returns the value of the Attribute at the given path.

getDouble(String) - Method in interface org.graffiti.attributes.Attributable

Returns the value of the Attribute at the given path.

getDouble(String, double) - Method in class org.graffiti.options.GravistoPreferences

getDoubleRow(JComponent, JComponent, Color) - Static method in class info.clearthought.layout.TableLayout

getDoubleValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.DoubleAndSourceList

getDoubleValues() - Method in class org.vanted.animation.data.ColorTimePoint

getDoubleValues() - Method in class org.vanted.animation.data.DoubleTimePoint

getDoubleValues() - Method in class org.vanted.animation.data.InterpolatableTimePoint

Unpacks the data value and turns it into an array of double values.

getDoubleValues() - Method in class org.vanted.animation.data.Point2DTimePoint

getDoubleValues() - Method in class org.vanted.animation.data.VectorTimePoint

getDownArrow() - Method in class org.jfree.chart.axis.ValueAxis

Returns a shape that can be displayed as an arrow pointing downwards at the end of an axis line.

getDownPaint() - Method in class org.jfree.chart.renderer.CandlestickRenderer

Returns the paint used to fill candles when the price moves down from open to close.

getDPI() - Method in class org.vanted.scaling.resources.ScaledFontUIResource

The corresponding DPI of the scaled resource.

getDPIScalingRatio() - Static method in class org.vanted.scaling.Toolbox

This is the scaling factor that could be passed onto a ComponentScaler to directly scale an exception component, for example, without going through the whole component tree, when using the ScalingCoordinator.

getDrawBorder() - Method in class org.jfree.chart.plot.CompassPlot

Returns a flag that controls whether or not a border is drawn.

getDrawBorder() - Method in class org.jfree.chart.plot.MeterPlot

Returns a flag that controls whether or not a rectangular border is drawn around the plot area.

getDrawCloseTicks() - Method in class org.jfree.chart.renderer.HighLowRenderer

Returns the flag that controls whether close ticks are drawn.

getDrawingSupplier() - Method in class org.jfree.chart.plot.Plot

Returns the drawing supplier for the plot.

getDrawingSupplier() - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer

Returns the drawing supplier from the plot.

getDrawingSupplier() - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the drawing supplier from the plot.

getDrawingSupplier() - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer

Returns the drawing supplier from the plot.

getDrawingSupplier() - Method in class org.jfree.chart.renderer.DefaultPolarItemRenderer

Returns the drawing supplier from the plot.

getDrawingSupplier() - Method in class org.jfree.chart.renderer.WaferMapRenderer

Returns the drawing supplier from the plot.

getDrawMode() - Method in class org.graffiti.plugins.views.defaults.GraffitiView

getDrawOpenTicks() - Method in class org.jfree.chart.renderer.HighLowRenderer

Returns the flag that controls whether open ticks are drawn.

getDrawOutlines() - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer

Returns true if outlines should be drawn for filled shapes, and false otherwise.

getDrawPaint() - Method in class org.jfree.chart.ClipPath

Returns the drawPaint.

getDrawSharedDomainAxis() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the flag that controls whether or not the shared domain axis is drawn for each subplot.

getDrawStroke() - Method in class org.jfree.chart.ClipPath

Returns the drawStroke.

getDuration() - Method in class org.jfree.data.gantt.Task

Returns the duration (actual or estimated) of the task.

getDval(int, double) - Method in class org.graffiti.plugin.algorithm.ThreadSafeOptions

DOCUMENT ME!

getECEntriesMap() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.BriteHierarchy

getEdge() - Method in class org.graffiti.event.EdgeEvent

Returns the originator of the event.

getEdge() - Method in class org.graffiti.event.GraphEvent

Returns the edge that originates this event, e.g.: the edge that has been added.

getEdge() - Method in class org.graffiti.event.NodeEvent

Returns the edge that originated this event.

getEdge() - Method in class org.graffiti.plugin.parameter.EdgeParameter

Returns the Edge contained in this EdgeParameter.

getEdgeAttribute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView

getEdgeAttribute() - Method in interface org.graffiti.attributes.AttributeConsumer

Returns the attribute, which should be available in a edge object.

getEdgeAttribute() - Method in class org.graffiti.plugins.views.matrix.MatrixView

getEdgeBendCoordinateAttributes(Edge) - Static method in class org.AttributeHelper

getEdgeBends(ConnRef) - Static method in class org.vanted.plugins.layout.adaptagrams.edgerouting.AdaptagramsRouting

Returns the edge bend points for a connector.

getEdgeBends(ConnRef, double) - Static method in class org.vanted.plugins.layout.adaptagrams.edgerouting.AdaptagramsRouting

Returns the edge bend points for a connector.

getEdgeBends(Edge) - Static method in class org.AttributeHelper

getEdgeBendStyle(Edge) - Static method in class org.AttributeHelper

getEdgeCursor() - Method in class org.graffiti.plugins.modes.defaults.MegaCreateTool

getEdgeElementName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLContentHandler

getEdgeElementName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLHandler

getEdgeIndex(Edge, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.PatternAttributeUtils

Returns the edge index for the given edge and position.

getEdgeLabel(Edge) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.metatool.MetatoolWriter

getEdges() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getEdges() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.TreeContainer

getEdges() - Method in class org.graffiti.graph.AbstractGraph

Returns a java.util.Collection containing all the edges of the current graph.

getEdges() - Method in class org.graffiti.graph.AbstractNode

Returns a collection containing all the ingoing and outgoing directed and undirected edges of the current Node.

getEdges() - Method in class org.graffiti.graph.AdjListGraph

getEdges() - Method in class org.graffiti.graph.AdjListNode

getEdges() - Method in interface org.graffiti.graph.Graph

Returns a java.util.Collection containing all the edges of the current Graph.

getEdges() - Method in interface org.graffiti.graph.Node

Returns a collection containing all the ingoing and outgoing directed and undirected edges of the current Node.

getEdges() - Method in class org.graffiti.graph.OptAdjListGraph

Returns a java.util.Collection containing all the edges of the current graph.

getEdges() - Method in class org.graffiti.selection.Selection

Returns the list of selected edges.

getEdges(Node, Node) - Method in class org.graffiti.graph.AbstractGraph

Returns a collection containing all the edges between n1 and n2.

getEdges(Node, Node) - Method in class org.graffiti.graph.AdjListGraph

getEdges(Node, Node) - Method in interface org.graffiti.graph.Graph

Returns a collection containing all the edges between n1 and n2.

getEdges(Node, Node) - Static method in class org.graffiti.util.GeneralUtils

Returns a Collection of edges between n1 (source) and n2 (target).

getEdgeScale() - Method in class org.vanted.plugins.layout.stressminimization.StressMinParamModel.MethodEdgeScaleGroup

getEdgeShapes() - Static method in class org.AttributeHelper

getEdgesIterator() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getEdgesIterator() - Method in class org.graffiti.graph.AbstractGraph

Returns an iterator over the edges of the graph.

getEdgesIterator() - Method in class org.graffiti.graph.AdjListNode

Returns an iterator containing all the ingoing and outgoing directed and undirected edges of the current Node.

getEdgesIterator() - Method in interface org.graffiti.graph.Graph

Returns an iterator over the edges of the Graph.

getEdgesIterator() - Method in interface org.graffiti.graph.Node

Returns an iterator containing all the ingoing and outgoing directed and undirected edges of the current Node.

getEdgesIterator() - Method in class org.graffiti.graph.OptAdjListGraph

Returns an iterator over the edges of the graph.

getEdgeStyle() - Method in class org.graffiti.plugins.ios.importers.gml.parser

getEditComponentManager() - Method in class org.graffiti.editor.MainFrame

DOCUMENT ME!

getEditComponents() - Method in class org.graffiti.editor.dialog.AbstractGraffitiValueEditContainer

Returns a java.util.List containing all the edit components of this ValueEditContainer.

getEditComponents() - Method in interface org.graffiti.editor.dialog.ValueEditContainer

Returns a java.util.List containing all the edit components of this ValueEditContainer.

getEditComponents() - Method in class org.graffiti.managers.EditComponentManager

Returns the map of value edit components.

getEditDeleteAction() - Static method in class org.graffiti.plugins.modes.defaults.AdvancedLabelTool

getEditedParameters() - Method in class org.graffiti.editor.dialog.DefaultParameterDialog

getEditedParameters() - Method in interface org.graffiti.editor.dialog.ParameterDialog

Returns the array of edited parameters.

getEditGraphElement() - Static method in class org.graffiti.plugins.modes.defaults.AdvancedLabelTool

getEditingRow() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.JTreeTable

getEditorSessionForGraph(Graph) - Method in class org.graffiti.editor.MainFrame

getEditorSessions() - Static method in class org.graffiti.editor.MainFrame

getEditPanel() - Method in class org.graffiti.plugin.inspector.InspectorTab

Returns the EditPanel of this tab.

getElementAt(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.MyDynamicObjectListModel

getElementID() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Reaction

getElements() - Method in class org.graffiti.editor.GraffitiButtonGroup

Returns all the buttons that are participating in this GraffitiButtonGroup.

getElements() - Method in class org.graffiti.selection.Selection

Returns a list containing all edges and nodes in this selection.

getEmptyDataMappingWithoutReplicateInformation(int, String, String, String, String, String, String, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingId

getEmptyDescription() - Method in class org.graffiti.plugins.inspectors.defaults.AbstractTab

getEmptyDescription() - Method in class org.graffiti.plugins.inspectors.defaults.EdgeTab

getEmptyDescription() - Method in class org.graffiti.plugins.inspectors.defaults.GraphTab

getEmptyDescription() - Method in class org.graffiti.plugins.inspectors.defaults.NodeTab

getEmptyDocument(ExperimentHeaderInterface) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

getEncodedUrl(String) - Static method in class org.AttributeHelper

getEnd() - Method in class org.jfree.data.time.RegularTimePeriod

Returns the date/time that marks the end of the time period.

getEnd() - Method in class org.jfree.data.time.SimpleTimePeriod

Returns the end date/time.

getEnd() - Method in interface org.jfree.data.time.TimePeriod

Returns the end date/time.

getEndBoundary() - Method in class org.jfree.data.statistics.HistogramBin

Returns the end boundary.

getEndPercent() - Method in class org.jfree.chart.renderer.GanttRenderer

Returns the position of the end of the progress indicator, as a percentage of the bar width.

getEndPort() - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.network.BroadCastService

getEndTime() - Method in class org.vanted.animation.Animation

getEndType() - Method in class org.jfree.chart.renderer.AreaRenderer

Returns a token that controls how the renderer draws the end points.

getEndValue() - Method in class org.jfree.chart.plot.IntervalMarker

Returns the end value for the interval.

getEndValue(int, int) - Method in class org.jfree.data.DefaultIntervalCategoryDataset

Returns the end data value for one category in a series.

getEndValue(int, int) - Method in class org.jfree.data.gantt.TaskSeriesCollection

Returns the end value for a task.

getEndValue(int, int) - Method in interface org.jfree.data.IntervalCategoryDataset

Returns the end value for the interval for a given series and category.

getEndValue(int, int, int) - Method in interface org.jfree.data.gantt.GanttCategoryDataset

Returns the end value of a sub-interval for a given item.

getEndValue(int, int, int) - Method in class org.jfree.data.gantt.TaskSeriesCollection

Returns the end value of a sub-interval for a given item.

getEndValue(Comparable, Comparable) - Method in class org.jfree.data.DefaultIntervalCategoryDataset

Returns the end data value for one category in a series.

getEndValue(Comparable, Comparable) - Method in class org.jfree.data.gantt.TaskSeriesCollection

Returns the end value for a task.

getEndValue(Comparable, Comparable) - Method in interface org.jfree.data.IntervalCategoryDataset

Returns the end value for the interval for a given series and category.

getEndValue(Comparable, Comparable, int) - Method in interface org.jfree.data.gantt.GanttCategoryDataset

Returns the end value of a sub-interval for a given item.

getEndValue(Comparable, Comparable, int) - Method in class org.jfree.data.gantt.TaskSeriesCollection

Returns the end value of a sub-interval for a given item.

getEndX(int, int) - Method in class org.jfree.data.AbstractIntervalXYDataset

Returns the end x-value (as a double primitive) for an item within a series.

getEndX(int, int) - Method in interface org.jfree.data.IntervalXYDataset

Returns the end x-value (as a double primitive) for an item within a series.

getEndXValue(int, int) - Method in class org.jfree.chart.demo.SimpleIntervalXYDataset

Returns the ending X value for the specified series and item.

getEndXValue(int, int) - Method in class org.jfree.chart.demo.SimpleIntervalXYDataset2

Returns the ending X value for the specified series and item.

getEndXValue(int, int) - Method in class org.jfree.data.CategoryTableXYDataset

Returns the ending X value for the specified series and item.

getEndXValue(int, int) - Method in class org.jfree.data.CombinedDataset

Returns the ending X value for the specified series and item.

getEndXValue(int, int) - Method in class org.jfree.data.DefaultTableXYDataset

Returns the ending X value for the specified series and item.

getEndXValue(int, int) - Method in interface org.jfree.data.IntervalXYDataset

Returns the ending X value for the specified series and item.

getEndXValue(int, int) - Method in interface org.jfree.data.IntervalXYZDataset

Returns the ending X value for the specified series and item.

getEndXValue(int, int) - Method in class org.jfree.data.statistics.HistogramDataset

Returns the end value for a bin.

getEndXValue(int, int) - Method in class org.jfree.data.SubSeriesDataset

Returns the ending X value for the specified series and item.

getEndXValue(int, int) - Method in class org.jfree.data.time.DynamicTimeSeriesCollection

Returns the end x-value.

getEndXValue(int, int) - Method in class org.jfree.data.time.TimePeriodValuesCollection

Returns the ending X value for the specified series and item.

getEndXValue(int, int) - Method in class org.jfree.data.time.TimeSeriesCollection

Returns the ending X value for the specified series and item.

getEndXValue(int, int) - Method in class org.jfree.data.time.TimeTableXYDataset

Returns the ending X value for the specified series and item.

getEndXValue(int, int) - Method in class org.jfree.data.XYBarDataset

Returns the ending X value for the specified series and item.

getEndXValue(int, int) - Method in class org.jfree.data.XYSeriesCollection

Returns the ending X value for the specified series and item.

getEndY(int, int) - Method in class org.jfree.data.AbstractIntervalXYDataset

Returns the end y-value (as a double primitive) for an item within a series.

getEndY(int, int) - Method in interface org.jfree.data.IntervalXYDataset

Returns the end y-value (as a double primitive) for an item within a series.

getEndYValue(int, int) - Method in class org.jfree.chart.demo.SimpleIntervalXYDataset

Returns the ending Y value for the specified series and item.

getEndYValue(int, int) - Method in class org.jfree.chart.demo.SimpleIntervalXYDataset2

Returns the ending Y value for the specified series and item.

getEndYValue(int, int) - Method in class org.jfree.data.CategoryTableXYDataset

Returns the ending Y value for the specified series and item.

getEndYValue(int, int) - Method in class org.jfree.data.CombinedDataset

Returns the ending Y value for the specified series and item.

getEndYValue(int, int) - Method in class org.jfree.data.DefaultTableXYDataset

Returns the ending Y value for the specified series and item.

getEndYValue(int, int) - Method in interface org.jfree.data.IntervalXYDataset

Returns the ending Y value for the specified series and item.

getEndYValue(int, int) - Method in interface org.jfree.data.IntervalXYZDataset

Returns the ending Y value for the specified series and item.

getEndYValue(int, int) - Method in class org.jfree.data.statistics.HistogramDataset

Returns the end y-value for a bin (which is the same as the y-value, this method exists only to support the general form of the IntervalXYDataset interface).

getEndYValue(int, int) - Method in class org.jfree.data.SubSeriesDataset

Returns the ending Y value for the specified series and item.

getEndYValue(int, int) - Method in class org.jfree.data.time.DynamicTimeSeriesCollection

Returns the end y-value.

getEndYValue(int, int) - Method in class org.jfree.data.time.TimePeriodValuesCollection

Returns the ending Y value for the specified series and item.

getEndYValue(int, int) - Method in class org.jfree.data.time.TimeSeriesCollection

Returns the ending Y value for the specified series and item.

getEndYValue(int, int) - Method in class org.jfree.data.time.TimeTableXYDataset

Returns the ending Y value for the specified series and item.

getEndYValue(int, int) - Method in class org.jfree.data.XYBarDataset

Returns the ending Y value for the specified series and item.

getEndYValue(int, int) - Method in class org.jfree.data.XYSeriesCollection

Returns the ending Y value for the specified series and item.

getEndZValue(int, int) - Method in interface org.jfree.data.IntervalXYZDataset

Returns the ending Z value for the specified series and item.

getEntities() - Method in interface org.jfree.chart.entity.EntityCollection

Returns the entities in an unmodifiable collection.

getEntities() - Method in class org.jfree.chart.entity.StandardEntityCollection

Returns the entities in an unmodifiable collection.

getEntity() - Method in class org.jfree.chart.ChartMouseEvent

Returns the chart entity (if any) under the mouse point.

getEntity(double, double) - Method in interface org.jfree.chart.entity.EntityCollection

Returns an entity whose area contains the specified point.

getEntity(double, double) - Method in class org.jfree.chart.entity.StandardEntityCollection

Returns an entity for the specified coordinates.

getEntityCollection() - Method in class org.jfree.chart.ChartRenderingInfo

Returns the collection of entities maintained by this instance.

getEntityForPoint(int, int) - Method in class org.jfree.chart.ChartPanel

Returns the chart entity at a given point.

getEntries() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway

getEntriesByEC(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggAPIServiceHelper

Retrieves an array of KO entries for a given EC number

getEntriesByEC(List<String>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggAPIServiceHelper

Algorithm to retrieve KO entries from EC numbers 2 step process 1.

getEntriesByKO(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggAPIServiceHelper

Retrieves an array of KO entries for a given KO id

getEntriesByKO(List<String>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggAPIServiceHelper

returns List of koEntry objects matching the given KO ids (K numbers)

getEntriesMap() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.BriteHierarchy

getEntriesRepresentingThisReaction(Collection<Entry>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Reaction

getEntry() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.KeggId

getEntryElementsFromGraphNodes(KgmlIdGenerator, List<Node>, Collection<Gml2PathwayWarningInformation>, Collection<Gml2PathwayErrorInformation>, HashMap<Entry, Node>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Entry

getEntryFromKgmlEntryElement(Collection<IdRef>, Collection<IdRef>, Element, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Entry

getEntryType(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.EntryType

getEntryTypeFromId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_editing.DBGETresult

getEnumValue() - Method in class org.graffiti.plugin.parameter.EnumParameter

getEnzClassEntry(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzClassEntry

getEnzymeClasses(String, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeService

Retuns all matches for the enzyme class.

getEnzymeInformation(String, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeService

Get a EnzymeEntry with the associated information.

getEnzymeNames() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionEntry

getEnzymeNodes(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelperBio

getError() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayErrorInformation

getErrorBarLen() - Method in class org.jfree.data.statistics.DefaultStatisticalCategoryDataset

getErrorBarLen() - Method in interface org.jfree.data.statistics.StatisticalCategoryDataset

getErrorMessages() - Static method in class org.ErrorMsg

Returns pending error messages that were not shown to the user immediately.

getErrorMessagesAsXML() - Static method in class org.ErrorMsg

getErrorMessagesShort() - Static method in class org.ErrorMsg

getErrorMsgCount() - Static method in class org.ErrorMsg

getErrors() - Static method in class org.ErrorMsg

getEuklidDistance(ClassesObject, ClassesNeuron) - Method in class qmwi.kseg.som.diagram.ClassesClass

Euklidische Distanz: Wurzel aus der Summe der Quadrate der Abst�nde der Eigenschaften zweier Objekte Bsp: a | a1=2, a2=4 b | b1=4, b2=6 ED = Wurzel( (a1-b1)*(a1-b1) + (a2-b2)*(a2-b2) ) ED = Wurzel( (2-4)*(2-4) + (4-6)*(4-6) ) Creation date: (13.12.2001 16:02:07)

getEventSetDescriptors() - Method in class net.iharder.dnd.FileDropBeanBeanInfo

Gets the bean's EventSetDescriptors.

getEventType() - Method in class org.graffiti.event.AbstractEvent

getExcelColumnName(int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData

converts the column from an integer to Excel column notation

getExcelFile() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.OpenExcelFileDialogService

getExcelfileid() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader

Deprecated.

getExcelfileid() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface

Deprecated.

getExcelFiles() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.OpenExcelFileDialogService

getExcelOrAnnotationFiles() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.OpenExcelFileDialogService

getExcelOrBinaryFile() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.OpenExcelFileDialogService

getExcelOrBinaryFiles() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.OpenExcelFileDialogService

getExcelTableData(BufferedReader, int, ArrayList<TextFileColumnInformation>, BackgroundTaskStatusProviderSupportingExternalCall) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataFileReader

getExcelTableData(File) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataFileReader

getExcelTableData(File, int, ArrayList<TextFileColumnInformation>, BackgroundTaskStatusProviderSupportingExternalCall) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataFileReader

getExcelTableData(File, ArrayList<String>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataFileReader

getExcelTableData(String, int, ArrayList<TextFileColumnInformation>, BackgroundTaskStatusProviderSupportingExternalCall) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataFileReader

getExcelTableDataPeak(File, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataFileReader

getExceptionSegmentCount(long, long) - Method in class org.jfree.chart.axis.SegmentedTimeline

Returns the number of exception segments wholly contained in the (fromDomainValue, toDomainValue) interval.

getExceptionSegments() - Method in class org.jfree.chart.axis.SegmentedTimeline

Returns a list of all the exception segments.

getExpAndConditionName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getExpAndConditionName() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getExpAndSeriesName(String, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

getExpcoord() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation

getExperiment(List<Document>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

getExperimentAnnotation(List<ExperimentDataProcessor>, Collection<File>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotationManager

getExperimentCoordinator() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getExperimentCoordinator() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getExperimentDatabaseId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getExperimentDatabaseId() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getExperimentDataProcessors() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataProcessingManager

getExperimentFromDOM(Document) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

getExperimentFromJDOM(Document) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

getExperimentHeader() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getExperimentHeader() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getExperimentHeader(StringBuilder, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getExperimentHeader(StringBuilder, int) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getExperimentId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader

getExperimentId() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface

getExperimentImportdate() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getExperimentImportdate() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getExperimentname() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader

getExperimentname() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface

getExperimentName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getExperimentName() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getExperimentName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingId

getExperimentName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataInfoPane

getExperimentName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ProjectEntity

getExperimentNameFromGUIselection(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TabDBE

getExperimentNameFromLineNode(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

getExperimentProcessor() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.MappingButton

getExperimentRemark() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getExperimentRemark() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getExperiments(Collection<GraphElement>, boolean, BackgroundTaskStatusProviderSupportingExternalCall) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.ExtractMappingDataAlgorithm

getExperimentStartDate() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getExperimentStartDate() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getExperimentType() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getExperimentType() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getExperimentType() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader

getExperimentType() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface

getExpimportdate() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation

getExplanation() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.ProvidesExplanation

getExplanation() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.RelationType

getExplodedPieArea() - Method in class org.jfree.chart.plot.PiePlotState

Returns the exploded pie area.

getExplodePercent(int) - Method in class org.jfree.chart.plot.PiePlot

Returns the amount that a section should be 'exploded'.

getExpname() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation

getExpstartdate() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation

getExpTickLabelsFlag() - Method in class org.jfree.chart.axis.LogarithmicAxis

Returns the 'expTickLabelsFlag' flag.

getExtension() - Method in class org.graffiti.core.GenericFileFilter

Return the extension string for files that this filter allows.

getExtension(File) - Method in class org.graffiti.managers.pluginmgr.PluginFileFilter

Returns the extension of the selected file.

getExtensionDescription() - Method in class org.graffiti.plugin.parameter.MultiFileSelectionParameter

getExtensions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.biopax.BioPAX_OWL_Writer

getExtensions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.metatool.MetaToolReader

getExtensions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.metatool.MetatoolWriter

getExtensions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.pajek.PajekWriter

getExtensions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.pajek.PovrayWriter

getExtensions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_XML_Writer

Return the file extension that can be read in.

getExtensions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sif.SIFWriter

getExtensions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.xwg_wilma.XWGSerializer

getExtensions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.BioPAX_OWL_Reader

getExtensions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kegg_xml.KEGG_XML_Reader

getExtensions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kegg_xml.KEGG2_XML_Reader

getExtensions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kegg_xml.KEGG2_XML_Writer

getExtensions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kgml.KEGG_XML_Reader_g

getExtensions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.pajek.PajekReader

getExtensions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.petri_ina_pnt.PNTReader

getExtensions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.petri_ina_pnt.PNTSerializer

getExtensions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_XML_Reader

Implemented method of interface InputSerializer.java Returns the extension of files that can be read in with the SBML importer

getExtensions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list.SIFreader

getExtensions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list.TextListReader

getExtensions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLReader

Returns the extensions supported by this reader.

getExtensions() - Method in interface org.graffiti.plugin.GenericPlugin

Returns an array of Extensions the plugin contains.

getExtensions() - Method in class org.graffiti.plugin.GenericPluginAdapter

Returns an Array of Extensions the plugin provides.

getExtensions() - Method in interface org.graffiti.plugin.io.Serializer

The file extensions the serializer can read or write.

getExtensions() - Method in class org.graffiti.plugin.parameter.MultiFileSelectionParameter

getExtensions() - Method in class org.graffiti.plugins.ios.exporters.gml.GMLgzWriter

getExtensions() - Method in class org.graffiti.plugins.ios.exporters.gml.GMLWriter

getExtensions() - Method in class org.graffiti.plugins.ios.exporters.gmlxml.GMLXMLWriter

getExtensions() - Method in class org.graffiti.plugins.ios.exporters.graphml.GraphMLgzWriter

getExtensions() - Method in class org.graffiti.plugins.ios.exporters.graphml.GraphMLWriter

getExtensions() - Method in class org.graffiti.plugins.ios.exporters.graphviz.DOTreader

getExtensions() - Method in class org.graffiti.plugins.ios.exporters.graphviz.DOTSerializer

getExtensions() - Method in class org.graffiti.plugins.ios.importers.gml.GMLReader

Returns the extensions supported by this reader.

getExtensions() - Method in class org.graffiti.plugins.ios.importers.graphml.GraphMLReader

getFactor() - Method in class org.vanted.scaling.ComponentRegulator

getFaroutCoefficient() - Method in interface org.jfree.data.statistics.BoxAndWhiskerXYDataset

Returns the value used as the farout coefficient.

getFaroutCoefficient() - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerXYDataset

Returns the value used as the farout coefficient.

getFast(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getFeed() - Method in class org.graffiti.managers.pluginmgr.PluginDescription

getFeedtextfile() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.RSSFeedManager

getFGcolor() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Graphics

getFile() - Method in class de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoaderInstance

getFile() - Method in interface de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoaderInterface

getFile(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeService

getFile(String[], String) - Static method in class org.OpenFileDialogService

getFile(String[], String, String) - Static method in class org.OpenFileDialogService

getFile(IOurl) - Static method in class org.graffiti.plugin.io.resources.FileSystemHandler

getFileChooser() - Method in class org.graffiti.managers.DefaultIOManager

getFileDir() - Method in class org.graffiti.plugin.io.resources.FileSystemIOConfig

getFileExt(String) - Static method in class org.graffiti.editor.actions.FileSaveAction

DOCUMENT ME!

getFileIdFromUrl(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.CachedWebDownload

getFileInputSource(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathService

getFileList() - Method in class org.graffiti.plugin.parameter.MultiFileSelectionParameter

getFileLoaderHelper() - Static method in enum org.Release

getFileModificationDateAndTime(File, String) - Static method in class org.graffiti.editor.GravistoService

getFileName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionDataset

getFileName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkItem

getFileName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.SessionLinkInfo

getFileName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.BufferedImageResult

getFileName() - Method in class org.graffiti.managers.pluginmgr.DefaultPluginEntry

Returns the file name of the plugin.

getFileName() - Method in interface org.graffiti.managers.pluginmgr.PluginEntry

Returns the file name of the plugin.

getFileName() - Method in class org.graffiti.plugin.io.resources.IOurl

getFileName() - Method in class org.graffiti.session.EditorSession

Get just the file name excluding the path

getFileName() - Method in class scenario.Scenario

getFileName(String, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.FileHelper

getFileName(String, String, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.FileHelper

getFileNameDecoded() - Method in class org.graffiti.plugin.io.resources.IOurl

getFileNameFull() - Method in class org.graffiti.session.EditorSession

Returns the full fileName including path of this session's graph.

getFileReader(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathService

getFiles() - Method in class net.iharder.dnd.FileDropEvent

Returns an array of files that were dropped on a registered drop target.

getFiles(String[], String) - Static method in class org.OpenFileDialogService

getFileSeparator() - Static method in class org.ReleaseInfo

getFileSystemName(String) - Static method in class org.StringManipulationTools

getFileTypeDescription() - Method in class org.graffiti.graph.AdjListGraph

Returns a file type description which can be used to choose an appropriate output serializer independent of the file extension.

getFileTypeDescription() - Method in interface org.graffiti.graph.Graph

Returns a file type description which can be used to choose an appropriate output serializer independent of the file extension.

getFileTypeDescription() - Method in class org.graffiti.session.EditorSession

Returns a file type description which can be used to choose an appropriate output serializer independent of the file extension.

getFileTypeDescriptions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.biopax.BioPAX_OWL_Writer

getFileTypeDescriptions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.metatool.MetaToolReader

getFileTypeDescriptions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.metatool.MetatoolWriter

getFileTypeDescriptions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.pajek.PajekWriter

getFileTypeDescriptions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.pajek.PovrayWriter

getFileTypeDescriptions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_XML_Writer

returns the file type description.

getFileTypeDescriptions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sif.SIFWriter

getFileTypeDescriptions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.xwg_wilma.XWGSerializer

getFileTypeDescriptions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.BioPAX_OWL_Reader

getFileTypeDescriptions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kegg_xml.KEGG_XML_Reader

getFileTypeDescriptions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kegg_xml.KEGG2_XML_Reader

getFileTypeDescriptions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kegg_xml.KEGG2_XML_Writer

getFileTypeDescriptions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kgml.KEGG_XML_Reader_g

getFileTypeDescriptions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.pajek.PajekReader

getFileTypeDescriptions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.petri_ina_pnt.PNTReader

getFileTypeDescriptions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.petri_ina_pnt.PNTSerializer

getFileTypeDescriptions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_XML_Reader

Implemented method of interface InputSerializer.java Returns the description of the input format

getFileTypeDescriptions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list.SIFreader

getFileTypeDescriptions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list.TextListReader

getFileTypeDescriptions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLReader

getFileTypeDescriptions() - Method in interface org.graffiti.plugin.io.Serializer

The file type descriptions of the files the serializer can read or write.

getFileTypeDescriptions() - Method in class org.graffiti.plugins.ios.exporters.gml.GMLgzWriter

getFileTypeDescriptions() - Method in class org.graffiti.plugins.ios.exporters.gml.GMLWriter

getFileTypeDescriptions() - Method in class org.graffiti.plugins.ios.exporters.gmlxml.GMLXMLWriter

getFileTypeDescriptions() - Method in class org.graffiti.plugins.ios.exporters.graphml.GraphMLgzWriter

getFileTypeDescriptions() - Method in class org.graffiti.plugins.ios.exporters.graphml.GraphMLWriter

getFileTypeDescriptions() - Method in class org.graffiti.plugins.ios.exporters.graphviz.DOTreader

getFileTypeDescriptions() - Method in class org.graffiti.plugins.ios.exporters.graphviz.DOTSerializer

getFileTypeDescriptions() - Method in class org.graffiti.plugins.ios.importers.gml.GMLReader

getFileTypeDescriptions() - Method in class org.graffiti.plugins.ios.importers.graphml.GraphMLReader

getFillBox() - Method in class org.jfree.chart.renderer.BoxAndWhiskerRenderer

Returns the flag that controls whether or not the box is filled.

getFillBox() - Method in class org.jfree.chart.renderer.XYBoxAndWhiskerRenderer

Returns the flag that controls whether or not the box is filled.

getFillcolor() - Method in class org.graffiti.graphics.GraphElementGraphicAttribute

Returns the 'fillcolor'-value of the encapsulated edge.

getFillColor() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getFillColor(Attributable) - Static method in class org.AttributeHelper

Returns the fill color of a given Atttibutable.

getFillPaint() - Method in class org.jfree.chart.ClipPath

Returns the fillPaint.

getFillPaint() - Method in class org.jfree.chart.needle.MeterNeedle

Returns the fill paint.

getFirstBarPaint() - Method in class org.jfree.chart.renderer.WaterfallBarRenderer

Returns the paint used to draw the first bar.

getFirstColumn() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.SubstanceColumnInformation

getFirstMillisecond() - Method in class org.jfree.data.time.FixedMillisecond

Returns the first millisecond of the time period.

getFirstMillisecond() - Method in class org.jfree.data.time.Millisecond

Returns the first millisecond of the time period.

getFirstMillisecond() - Method in class org.jfree.data.time.RegularTimePeriod

Returns the first millisecond of the time period, evaluated in the default time zone.

getFirstMillisecond(Calendar) - Method in class org.jfree.data.time.Day

Returns the first millisecond of the day, evaluated using the supplied calendar (which determines the time zone).

getFirstMillisecond(Calendar) - Method in class org.jfree.data.time.FixedMillisecond

Returns the first millisecond of the time period.

getFirstMillisecond(Calendar) - Method in class org.jfree.data.time.Hour

Returns the first millisecond of the hour.

getFirstMillisecond(Calendar) - Method in class org.jfree.data.time.Millisecond

Returns the first millisecond of the time period.

getFirstMillisecond(Calendar) - Method in class org.jfree.data.time.Minute

Returns the first millisecond of the minute.

getFirstMillisecond(Calendar) - Method in class org.jfree.data.time.Month

Returns the first millisecond of the month, evaluated using the supplied calendar (which determines the time zone).

getFirstMillisecond(Calendar) - Method in class org.jfree.data.time.Quarter

Returns the first millisecond in the Quarter, evaluated using the supplied calendar (which determines the time zone).

getFirstMillisecond(Calendar) - Method in class org.jfree.data.time.RegularTimePeriod

Returns the first millisecond of the time period, evaluated using the supplied calendar (which incorporates a timezone).

getFirstMillisecond(Calendar) - Method in class org.jfree.data.time.Second

Returns the first millisecond of the minute.

getFirstMillisecond(Calendar) - Method in class org.jfree.data.time.Week

Returns the first millisecond of the week, evaluated using the supplied calendar (which determines the time zone).

getFirstMillisecond(Calendar) - Method in class org.jfree.data.time.Year

Returns the first millisecond of the year, evaluated using the supplied calendar (which determines the time zone).

getFirstMillisecond(TimeZone) - Method in class org.jfree.data.time.RegularTimePeriod

Returns the first millisecond of the time period, evaluated within a specific time zone.

getFirstName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_editing.DBGETresult

getFixedAutoRange() - Method in class org.jfree.chart.axis.ValueAxis

Returns the fixed auto range.

getFixedDimension() - Method in class org.jfree.chart.axis.Axis

Returns the fixed dimension for the axis.

getFixedDomainAxisSpace() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the fixed domain axis space.

getFixedDomainAxisSpace() - Method in class org.jfree.chart.plot.XYPlot

Returns the fixed domain axis space.

getFixedLegendItems() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the fixed legend items, if any.

getFixedLegendItems() - Method in class org.jfree.chart.plot.XYPlot

Returns the fixed legend items, if any.

getFixedRangeAxisSpace() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the fixed range axis space.

getFixedRangeAxisSpace() - Method in class org.jfree.chart.plot.XYPlot

Returns the fixed range axis space.

getFixedSearchFilterMatchCount() - Method in class org.FolderPanel

getFloat() - Method in class org.graffiti.attributes.FloatAttribute

Returns the value of this object.

getFloat() - Method in class org.graffiti.plugin.parameter.FloatParameter

Returns the value of this parameter as a Float.

getFloat(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getFloat(String) - Method in class org.graffiti.attributes.AbstractAttributable

Returns the value of the Attribute at the given path.

getFloat(String) - Method in interface org.graffiti.attributes.Attributable

Returns the value of the Attribute at the given path.

getFloat(String, float) - Method in class org.graffiti.options.GravistoPreferences

getFolderPanel() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.FileHandlerUserDecision

getFollowDataInSubranges() - Method in class org.jfree.chart.plot.ThermometerPlot

Returns a flag that controls whether or not the thermometer axis zooms to display the subrange within which the data value falls.

getFont() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttribute

getFont() - Method in class org.jfree.chart.annotations.TextAnnotation

Returns the font for the annotation.

getFont() - Method in class org.jfree.chart.title.TextTitle

Returns the font used to display the title string.

getFont() - Method in class org.vanted.scaling.resources.ImmutableCheckBox

getFont() - Method in class org.vanted.scaling.resources.ImmutableSlider

getFontName() - Method in class org.graffiti.graphics.LabelAttribute

getFontSize() - Method in class org.graffiti.graphics.LabelAttribute

getFontStyle() - Method in class org.graffiti.graphics.LabelAttribute

getFontStyleJava() - Method in class org.graffiti.graphics.LabelAttribute

getForegroundAlpha() - Method in class org.jfree.chart.plot.Plot

Returns the alpha-transparency for the plot foreground.

getFormatString() - Method in class org.jfree.chart.labels.AbstractXYItemLabelGenerator

Returns the format string (this controls the overall structure of the label).

getFormData() - Method in class de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoaderInstance

getFormData() - Method in interface de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoaderInterface

getFormula() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getFormula() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getFoundComponent() - Method in class org.graffiti.plugins.modes.defaults.MegaTools

getFPS() - Method in class org.vanted.animation.Animator

Gets the number of times animations are updated per second.

getFrame() - Method in class org.graffiti.plugins.attributecomponents.simplelabel.ViewLabel

getFramecolor() - Method in class org.graffiti.graphics.GraphElementGraphicAttribute

Returns the 'framecolor'-value of the encapsulated edge.

getFrameColor() - Method in class org.FolderPanel

getFrameNumber() - Method in class org.graffiti.editor.GraffitiFrame

getFrameNumber() - Method in class org.graffiti.editor.GraffitiInternalFrame

getFrameThickness() - Method in class org.graffiti.graphics.GraphElementGraphicAttribute

Returns the 'frameThickness'-value of the encapsulated edge.

getFrameThickNess(GraphElement) - Static method in class org.AttributeHelper

getFst() - Method in class org.graffiti.plugins.attributecomponents.simplelabel.PointPair

DOCUMENT ME!

getFst() - Method in class org.graffiti.util.BoolPair

DOCUMENT ME!

getFst() - Method in class org.graffiti.util.Pair

Returns the first (left) component of the pair.

getFullDataMappingIdForReplicate(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingId

getFullId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample

Get a id, based on experiment name, plant name and genotype, time point and time unit This can be used to find similar data entries for example for other substances.

getFullId() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface

Get a id, based on experiment name, plant name and genotype, time point and time unit This can be used to find similar data entries for example for other substances.

getFuncat() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getFuncat() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getFunction() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLAlgebraicRule

getFunction() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLAssignmentRule

getFunction() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLConstraint

getFunction() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventAssignmentHelper

getFunction() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLFunctionDefinition

getFunction() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLInitialAssignment

getFunction() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLRateRule

getFunction(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.KineticLawHelper

getFunctionDefinitionHeadlines(Graph) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLFunctionDefinitionHelper

getFuzzyLabels(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.ReplaceLabelAlgorithm

Deprecated.

Use AttributeHelper.getFuzzyLabels(String) instead

getFuzzyLabels(String) - Static method in class org.AttributeHelper

getGap() - Method in class org.jfree.chart.plot.CombinedDomainCategoryPlot

Returns the space between subplots.

getGap() - Method in class org.jfree.chart.plot.CombinedDomainXYPlot

Returns the space between subplots.

getGap() - Method in class org.jfree.chart.plot.CombinedRangeCategoryPlot

Returns the space between subplots.

getGap() - Method in class org.jfree.chart.plot.CombinedRangeXYPlot

Returns the space between subplots.

getGap() - Method in class org.jfree.chart.plot.PieLabelRecord

Returns the gap.

getGapThreshold() - Method in class org.jfree.chart.renderer.StandardXYItemRenderer

Returns the gap threshold for discontinuous lines.

getGeneId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionDatapoint

getGeneIDs(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KoEntry

getGenotype() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getGenotype() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getGenotype() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MemPlant

getGenoType() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingId

getGenotypeFromSeriesInformation(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow

getGOinformation(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.GoProcessing

getGradientPaintTransformer() - Method in class org.jfree.chart.renderer.BarRenderer

Returns the gradient paint transformer (an object used to transform gradient paint objects to fit each bar.

getGradientPaintTransformer() - Method in class org.jfree.chart.renderer.XYBarRenderer

Returns the gradient paint transformer (an object used to transform gradient paint objects to fit each bar.

getGraph() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getGraph() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView

getGraph() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView

getGraph() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.LVL3ModelConverter

getGraph() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.LVL2ModelConverter

getGraph() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLHandler

getGraph() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway

getGraph() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.copy_pattern_layout.CopyPatternLayoutAlgorithm

getGraph() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.SessionLinkInfo

getGraph() - Method in class org.graffiti.event.GraphEvent

Returns the graph that has been changed.

getGraph() - Method in class org.graffiti.graph.AbstractGraphElement

Returns the Graph the AbstractGraphElement belongs to.

getGraph() - Method in interface org.graffiti.graph.GraphElement

Returns the Graph the GraphElement belongs to.

getGraph() - Method in class org.graffiti.plugin.view.AbstractView

getGraph() - Method in interface org.graffiti.plugin.view.View

getGraph() - Method in class org.graffiti.plugins.ios.importers.gml.parser

Returns the read in graph from the parser.

getGraph() - Method in class org.graffiti.selection.Selection

getGraph() - Method in class org.graffiti.session.Session

Returns the graph of this session.

getGraph() - Method in class placement.GraphParser

getGraph(File) - Method in class org.graffiti.editor.MainFrame

getGraph(String, URL) - Method in class org.graffiti.editor.MainFrame

getGraph(Graph) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway

getGraph(IOurl) - Method in class org.graffiti.editor.MainFrame

getGraph(IOurl, String) - Method in class org.graffiti.editor.MainFrame

Will not be able to read cluster information (in separate file) for ".net" files and .gz-files

getGraphAttribute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView

getGraphAttribute() - Method in interface org.graffiti.attributes.AttributeConsumer

Returns the attribute, which should be available in a graph object.

getGraphAttribute() - Method in class org.graffiti.plugins.views.matrix.MatrixView

getGraphElement() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.WeightedDistanceInfo

getGraphElement() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ValueAndGraphElement

getGraphElement() - Method in interface org.graffiti.plugin.view.GraphElementComponentInterface

Returns the graphElement.

getGraphElement() - Method in class org.graffiti.plugins.views.defaults.AbstractGraphElementComponent

Returns the graphElement.

getGraphElementComponent(GraphElement) - Method in class org.graffiti.plugin.view.AbstractView

getGraphElementComponentMap() - Method in class org.graffiti.plugin.view.AbstractView

getGraphElements() - Method in class org.graffiti.graph.AbstractGraph

Returns all nodes and all edges contained in this graph.

getGraphElements() - Method in interface org.graffiti.graph.Graph

Returns all nodes and all edges contained in this graph.

getGraphElementsMap() - Method in class org.graffiti.session.EditorSession

Returns the graphElementMap.

getGraphFileExtensions() - Method in class org.graffiti.managers.DefaultIOManager

getGraphFileExtensions() - Method in interface org.graffiti.managers.IOManager

getGraphFilesFromUser() - Static method in class org.graffiti.editor.actions.FileOpenAction

getGraphics() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Entry

getGraphics() - Method in class org.graffiti.plugins.views.defaults.GraffitiView

getGraphicsFromGraphNode(Node, Collection<Gml2PathwayWarningInformation>, Collection<Gml2PathwayErrorInformation>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Graphics

getGraphicsFromKgmlElement(Element) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Graphics

getGraphicsType(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.kgmlGraphicsType

getGraphInstance() - Method in class org.graffiti.plugin.algorithm.ThreadSafeOptions

DOCUMENT ME!

getGraphNode() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getGraphNode(Graph, String, HashMap<String, Node>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathMolecule

getGraphPath() - Static method in class org.graffiti.plugins.ios.importers.PortableUrlService

getGraphPostProcessors() - Method in class org.graffiti.plugin.GenericPluginAdapter

getGrayColors(int) - Static method in class org.Colors

getGrayColorsInverse(int) - Static method in class org.Colors

getGreen() - Method in class org.graffiti.graphics.ColorAttribute

Returns the 'green'-value of the encapsulated color.

getGrid(double) - Static method in class org.graffiti.plugins.modes.defaults.MegaMoveTool

getGridColor(Graph, Color) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

getGroup() - Method in class org.jfree.data.AbstractDataset

Returns the dataset group for the dataset.

getGroup() - Method in interface org.jfree.data.Dataset

Returns the dataset group.

getGroup(Comparable) - Method in class org.jfree.data.KeyToGroupMap

Returns the group that a key is mapped to.

getGroup1() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkItem

getGroup2() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkItem

getGroupCount() - Method in class org.jfree.data.KeyToGroupMap

Returns the number of groups in the map.

getGroupIndex(Comparable) - Method in class org.jfree.data.KeyToGroupMap

Returns the index for the group.

getGroupName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggPathwayEntry

getGroupPaint() - Method in class org.jfree.chart.renderer.MinMaxCategoryRenderer

Gets the paint of the line between the minimum value and the maximum value.

getGroups() - Method in class org.jfree.data.KeyToGroupMap

Returns the groups (always including the default group) in the map.

getGroupSegmentCount() - Method in class org.jfree.chart.axis.SegmentedTimeline

Returns the number of segments in a segment group.

getGroupSize() - Method in class qmwi.kseg.som.DataSet

getGroupStroke() - Method in class org.jfree.chart.renderer.MinMaxCategoryRenderer

Gets the stroke of the line between the minimum value and the maximum value.

getGrowthconditions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getGrowthconditions() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getGUI() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ProjectEntity

getGUI() - Method in class org.vanted.plugins.layout.multilevelframework.LayoutAlgorithmWrapper

getGUIComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartAttributePlugin

getGUIComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartAttributePlugin

getGUIComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttributePlugin

getGUIComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundImageAttributePlugin

getGUIComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_color.LabelColorAttributePlugin

getGUIComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings.LabelFontAttributePlugin

getGUIComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style.LabelStyleAttributePlugin

getGUIComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttributePlugin

getGUIComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggAttributePlugin

getGUIComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment.LabelAlignmentAttributePlugin

getGUIComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttributePlugin

getGUIComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttributePlugin

getGUIComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.DBEplugin

getGUIComponents() - Method in interface org.graffiti.plugin.EditorPlugin

Returns the array of GraffitiComponents the plugin contains.

getGUIComponents() - Method in class org.graffiti.plugin.EditorPluginAdapter

Returns the array of GraffitiComponents the plugin contains.

getGUIName() - Method in class org.vanted.plugins.layout.multilevelframework.LayoutAlgorithmWrapper

getHandlerFromPrefix(String) - Static method in class org.graffiti.plugin.io.resources.ResourceIOManager

getHandlers(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.FileHandlerUserDecision

getHashFromFile(File, HashType) - Static method in class org.graffiti.editor.GravistoService

getHashFromFile(String, HashType) - Static method in class org.graffiti.editor.GravistoService

getHashFromInputStream(InputStream, HashType) - Static method in class org.graffiti.editor.GravistoService

getHashFromInputStream(InputStream, ObjectRef, HashType) - Static method in class org.graffiti.editor.GravistoService

getHasOnlySubstanceUnits(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper

Returns the boolean value hasOnlySubstanceUnits of the species

getHeadArrow() - Method in interface org.graffiti.plugin.view.EdgeShape

Returns the shape representing the arrow at the target node.

getHeadArrow() - Method in class org.graffiti.plugins.views.defaults.LineEdgeShape

Returns the arrow at the target side.

getHeader() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

getHeader() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface

getHeaders() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

getHeaders() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface

getHeading() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow

getHeatmapColor(double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.HeatMapOptions

getHeatMapGamma(Graph) - Static method in class org.AttributeHelper

getHeatMapLowerBound(Graph) - Static method in class org.AttributeHelper

getHeatMapMiddleBound(Graph) - Static method in class org.AttributeHelper

getHeatMapUpperBound(Graph) - Static method in class org.AttributeHelper

getHeight() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getHeight() - Method in class org.graffiti.graphics.DimensionAttribute

Returns the 'height'-value of the encapsulated dimension.

getHeight() - Method in class org.jfree.chart.DrawableLegendItem

Get the height of this item.

getHeight(Graphics2D) - Method in class org.jfree.chart.axis.MarkerAxisBand

Returns the height of the band.

getHeight(Node) - Static method in class org.AttributeHelper

getHelpActionListener(String) - Static method in class org.JLabelJavaHelpLink

getHelpButton(ActionListener, Color) - Static method in class org.FolderPanel

getHelpContext() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.FileOpenAction

getHelpContext() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.FileSaveAsAction

getHelpContext() - Method in class org.graffiti.editor.actions.AddAttributeAction

Returns the help context of this action.

getHelpContext() - Method in class org.graffiti.editor.actions.ChangeAttributeValueAction

Returns the help context for the action.

getHelpContext() - Method in class org.graffiti.editor.actions.CloneViewAction

Returns the help context for this action.

getHelpContext() - Method in class org.graffiti.editor.actions.CloseViewAction

Returns the help context for this action.

getHelpContext() - Method in class org.graffiti.editor.actions.CopyAction

Returns the help context for the action.

getHelpContext() - Method in class org.graffiti.editor.actions.CutAction

Returns the help context for the action.

getHelpContext() - Method in class org.graffiti.editor.actions.DeleteAction

Returns the help context for the action.

getHelpContext() - Method in class org.graffiti.editor.actions.DeleteAttributeAction

Returns the help context of this action.

getHelpContext() - Method in class org.graffiti.editor.actions.EditRedoAction

getHelpContext() - Method in class org.graffiti.editor.actions.EditUndoAction

getHelpContext() - Method in class org.graffiti.editor.actions.ExitAction

getHelpContext() - Method in class org.graffiti.editor.actions.FileCloseAction

getHelpContext() - Method in class org.graffiti.editor.actions.FileNewAction

getHelpContext() - Method in class org.graffiti.editor.actions.FileOpenAction

getHelpContext() - Method in class org.graffiti.editor.actions.FileSaveAction

getHelpContext() - Method in class org.graffiti.editor.actions.FileSaveAllAction

getHelpContext() - Method in class org.graffiti.editor.actions.FileSaveAsAction

getHelpContext() - Method in class org.graffiti.editor.actions.PasteAction

Returns the help context for the action.

getHelpContext() - Method in class org.graffiti.editor.actions.PluginManagerEditAction

getHelpContext() - Method in class org.graffiti.editor.actions.RedrawViewAction

getHelpContext() - Method in class org.graffiti.editor.actions.RunAlgorithm

getHelpContext() - Method in class org.graffiti.editor.actions.SelectAllAction

Returns the help context for the action.

getHelpContext() - Method in class org.graffiti.editor.actions.ViewNewAction

getHelpContext() - Method in class org.graffiti.plugin.actions.GraffitiAction

Returns the help context for this action.

getHelpContext() - Method in class org.graffiti.plugin.actions.PopupAction

Returns the help context for the action.

getHelpContext() - Method in class org.graffiti.plugins.guis.switchselections.SelectionChangeAction

getHelpContext() - Method in class org.graffiti.plugins.guis.switchselections.SelectionSaveAction

getHelperNodes(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getHelpID() - Method in class org.graffiti.help.HelpContext

Returns the java help id of this help context.

getHelpIntroductionText() - Static method in class org.ReleaseInfo

getHelpTextComponent(String, String, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.services.GUIhelper

getHelpTopicFor(String, String) - Static method in class org.AttributeHelper

getHelpURL() - Method in class org.graffiti.help.HelpContext

Returns the url of this help context.

getHeterogenitaet() - Method in class qmwi.kseg.som.diagram.ClassesAll

Gesamt-Homogenit�t ist die Summe der einzelnen Klassenhomogenit�ten Creation date: (13.12.2001 15:59:21)

getHeterogenitaet(ClassesAll, int) - Method in class qmwi.kseg.som.diagram.ClassesClass

Homogenit�t ist die Summe der Euklidische Abst�nde zwischen den Objekten und dem Neuron Creation date: (13.12.2001 15:59:21)

getHexFromColor(Color) - Static method in class org.color.ColorUtil

getHideDeactivateSwitch() - Static method in class org.graffiti.editor.MainFrame

getHigh() - Method in class org.jfree.data.OHLCDataItem

Returns the high value.

getHigh(int, int) - Method in class org.jfree.data.CombinedDataset

Returns the high-value (as a double primitive) for an item within a series.

getHigh(int, int) - Method in class org.jfree.data.DefaultHighLowDataset

Returns the high-value (as a double primitive) for an item within a series.

getHigh(int, int) - Method in interface org.jfree.data.HighLowDataset

Returns the high-value (as a double primitive) for an item within a series.

getHigh(int, int) - Method in class org.jfree.data.OHLCDataset

Returns the high-value (as a double primitive) for an item within a series.

getHigh(int, int) - Method in class org.jfree.data.SubSeriesDataset

Returns the high-value (as a double primitive) for an item within a series.

getHighlightPaint() - Method in class org.jfree.chart.needle.MeterNeedle

Returns the highlight paint.

getHighValue(int, int) - Method in class org.jfree.data.CombinedDataset

Returns the high-value for the specified series and item.

getHighValue(int, int) - Method in class org.jfree.data.DefaultHighLowDataset

Returns the high-value for one item in a series.

getHighValue(int, int) - Method in interface org.jfree.data.HighLowDataset

Returns the high-value for the specified series and item.

getHighValue(int, int) - Method in class org.jfree.data.OHLCDataset

Returns the high value.

getHighValue(int, int) - Method in class org.jfree.data.SubSeriesDataset

Returns the high-value for the specified series and item.

getHistoryCount() - Method in class org.jfree.data.time.TimeSeries

Returns the history count for the series.

getHomeFolder() - Static method in class org.HomeFolder

getHomogenitaet() - Method in class qmwi.kseg.som.diagram.ClassesAll

Gesamt-Homogenit�t ist die Summe der einzelnen Klassenhomogenit�ten Creation date: (13.12.2001 15:59:21)

getHomogenitaet() - Method in class qmwi.kseg.som.diagram.ClassesClass

Homogenit�t ist die Summe der Euklidische Abst�nde zwischen den Objekten und dem Neuron Creation date: (13.12.2001 15:59:21)

getHorizontalAlignment() - Method in class org.jfree.chart.title.Title

Returns the horizontal alignment of the title.

getHorizontalOpposite(ItemLabelAnchor) - Static method in class org.jfree.chart.labels.ItemLabelAnchor

Deprecated.

Renderer now has positive and negative item label anchors.

getHostName() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.threading.SystemAnalysis

getHour() - Method in class org.jfree.data.time.Hour

Returns the hour.

getHour() - Method in class org.jfree.data.time.Minute

Returns the hour.

getHSplitLayout(JComponent, JComponent, double, double) - Static method in class org.FolderPanel

getIcon() - Method in class de.ipk_gatersleben.ag_nw.graffiti.DBE_EditorPluginAdapter

getIcon() - Method in class de.ipk_gatersleben.ag_nw.graffiti.DBE_PluginAdapter

getIcon() - Method in class de.ipk_gatersleben.ag_nw.graffiti.IPK_EditorPluginAdapter

getIcon() - Method in class de.ipk_gatersleben.ag_nw.graffiti.IPK_PluginAdapter

getIcon() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.Addon

getIcon() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.AddonAdapter

Override to add custom Add-on icon.

getIcon() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping.DataMapping

getIcon() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartComponent

getIcon() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.GraffitiCharts

getIcon() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.DBEplugin

getIcon() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.MappingButton

getIcon() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.PutIntoSidePanel

getIcon() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TabDBE

getIcon() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.WebsiteGeneration

getIcon() - Method in class org.graffiti.attributes.AbstractAttribute

getIcon() - Static method in class org.graffiti.editor.GraffitiInternalFrame

getIcon() - Method in class org.graffiti.plugin.algorithm.AbstractEditorAlgorithm

Returns the icon of the algorithm (used, e.g.

getIcon() - Method in interface org.graffiti.plugin.algorithm.EditorAlgorithm

Returns the icon of the algorithm (used, e.g.

getIcon() - Method in interface org.graffiti.plugin.Displayable

getIcon() - Method in interface org.graffiti.plugin.GenericPlugin

Returns the icon of the plugin.

getIcon() - Method in class org.graffiti.plugin.GenericPluginAdapter

Returns the default icon for a plugin, which does not overwrite this method.

getIcon() - Method in class org.graffiti.plugin.inspector.InspectorTab

getIcon() - Method in class org.graffiti.plugin.parameter.AbstractSingleParameter

getIcon() - Method in enum org.graffiti.plugins.views.defaults.DockingAttributeEditor.DockingModes

getIcon() - Method in enum org.graffiti.plugins.views.defaults.GradientFillAttributeEditor.NodeGradientModes

getIcon() - Method in class org.vanted.plugins.layout.multilevelframework.MultilevelFrameworkPlugin

getIcon() - Method in class org.vanted.scaling.resources.ImmutableCheckBox

getIcon(int) - Method in class net.iharder.dnd.FileDropBeanBeanInfo

This method returns an image object that can be used to represent the bean in toolboxes, toolbars, etc.

getIcon(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.RimasTab

getIcon(String) - Method in class org.graffiti.core.ImageBundle

Returns the specified image icon or a blank icon, if the specified image icon could not be found.

getIconHeight() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.CompositeIcon

Returns the icon's height.

getIconHeight() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.VTextIcon

Returns the icon's height.

getIconHeight() - Method in class org.vanted.scaling.resources.ScaledIcon

getIconWidth() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.CompositeIcon

Returns the icon's width.

getIconWidth() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.VTextIcon

Returns the icon's width.

getIconWidth() - Method in class org.vanted.scaling.resources.ScaledIcon

getId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.BriteEntry

getId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.BriteHierarchy

getId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_editing.DBGETresult

getId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_dbe.MenuItemInfoDialog

DOCUMENT ME!

getId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_example.MenuItemInfoDialog

Deprecated.

DOCUMENT ME!

getId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.SimpleModel

Get model identifier

getId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.KeggId

getId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Entry

getId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Reaction

getId() - Method in class org.graffiti.attributes.AbstractAttribute

Returns the Attribute's identifier.

getId() - Method in interface org.graffiti.attributes.Attribute

Returns the Attribute's identifier.

getId() - Method in class org.graffiti.attributes.AttributeDescription

getId() - Method in class org.graffiti.plugin.gui.AbstractGraffitiContainer

Returns an unique identifier for this GraffitiContainer.

getId() - Method in interface org.graffiti.plugin.gui.GraffitiContainer

Returns an unique identifier for this GraffitiComponent.

getId() - Method in class org.graffiti.plugin.gui.GraffitiToolbar

Returns the id of this toolbar.

getId() - Method in class org.graffiti.plugin.gui.ToolButton

getId() - Method in class org.graffiti.plugin.mode.AbstractMode

Returns the name of this mode.

getId() - Method in interface org.graffiti.plugin.mode.Mode

Returns the name of this mode.

getId() - Method in class org.graffiti.plugins.inspectors.defaults.InspectorContainer

getId(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.Id

getId(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.IdRef

getID() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionEntry

getID() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeEntry

getID() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getID() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartment

getID() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper

getID() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLFunctionDefinition

getID() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLParameter

getID() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLUnitDefinition

getID() - Method in class org.graffiti.graph.AbstractGraphElement

getID() - Method in interface org.graffiti.graph.GraphElement

getID(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getID(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter

getID(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getID(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper

Returns the id of the species

getIdGlycanProcessed() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.KeggId

getIdList(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttribute

getIdsAndAverageValues() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getIdsAndValues(Integer) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getIdx() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyDouble

getIgnoreNullValues() - Method in class org.jfree.chart.plot.PiePlot

Returns the flag that controls whether null values in the dataset are ignored.

getIgnorePolygon() - Method in class org.graffiti.plugins.views.defaults.PolygonalNodeShape

getImage() - Method in class org.graffiti.graphics.AWTImageAttribute

Returns the 'image'-value of the encapsulated awt-image.

getImage() - Method in class org.graffiti.graphics.ImageAttribute

Returns the 'image'-value of the encapsulated image.

getImage() - Method in class org.graffiti.plugin.parameter.AbstractSingleParameter

Returns the image representing the parameter.

getImage() - Method in interface org.graffiti.plugin.parameter.Parameter

Returns an image representing the Parameter.

getImage() - Method in class org.jfree.chart.title.ImageTitle

Returns the image for the title.

getImage(String) - Method in class org.graffiti.core.ImageBundle

Returns the specified image or a blank image, if the specified image could not be found.

getImage(URL) - Static method in class org.graffiti.editor.GravistoService

getImageIcon(String) - Method in class org.graffiti.core.ImageBundle

Returns the specified image icon or a blank icon, if the specified image icon could not be found.

getImageMap(String, ChartRenderingInfo) - Static method in class org.jfree.chart.ChartUtilities

Creates an HTML image map.

getImageMap(String, ChartRenderingInfo, ToolTipTagFragmentGenerator, URLTagFragmentGenerator) - Static method in class org.jfree.chart.ChartUtilities

Creates an HTML image map.

getImageMapAreaTag(ToolTipTagFragmentGenerator, URLTagFragmentGenerator) - Method in class org.jfree.chart.entity.ChartEntity

Returns an HTML image map tag tag for this entity.

getImportdate() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader

getImportdate() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface

getImportDate() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

getImportDate() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface

getImportStatements() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption

getImportusergroup() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader

getImportusergroup() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface

getImportusername() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader

getImportusername() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface

getIncompletePaint() - Method in class org.jfree.chart.renderer.GanttRenderer

Returns the paint used to show the percentage incomplete.

getInConstraints() - Method in class placement.Variable

getInCount() - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.network.BroadCastService

getIncrement() - Method in class org.graffiti.editor.Rule

getInDegree() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getInDegree() - Method in class org.graffiti.graph.AbstractNode

Returns the in-degree of the current Node.

getInDegree() - Method in class org.graffiti.graph.AdjListNode

Returns the in-degree of the current Node.

getInDegree() - Method in interface org.graffiti.graph.Node

Returns the in-degree of the current Node.

getIndex() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.IndexAndString

getIndex() - Method in class org.jfree.chart.axis.SegmentedTimeline.Segment

Deprecated.

Use getMillisecond().

getIndex() - Method in class org.jfree.chart.entity.ContourEntity

Returns the index.

getIndex(Comparable) - Method in class org.jfree.data.CategoryToPieDataset

Returns the index for a given key.

getIndex(Comparable) - Method in class org.jfree.data.DefaultKeyedValues

Returns the index for a given key or -1 if the key is not found.

getIndex(Comparable) - Method in class org.jfree.data.DefaultPieDataset

Returns the index for a key.

getIndex(Comparable) - Method in class org.jfree.data.KeyedObjects

Returns the index for a given key.

getIndex(Comparable) - Method in interface org.jfree.data.KeyedValues

Returns the index for a given key.

getIndex(Node) - Method in class org.vanted.indexednodes.IndexedNodeSet

Returns the index in this set, based on the indexing of the based collection.

getIndex(RegularTimePeriod) - Method in class org.jfree.data.time.TimeSeries

Returns the index for the item (if any) that corresponds to a time period.

getIndexOfChild(Object, Object) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.AbstractTreeTableModel

getIndexOfPathWhichContains(double, double) - Method in class org.graffiti.plugins.views.defaults.PolyLineEdgeShape

getInducedNeighboursOf(int) - Method in class org.vanted.indexednodes.IndexedNodeSet

Returns a org.vanted.addons.indexednodes.IndexedNodeSet containing all neighbors of the node at the specified index that *are also contained in this set*.

getInducedNeighboursOf(Node) - Method in class org.vanted.indexednodes.IndexedNodeSet

Returns a org.vanted.addons.indexednodes.IndexedNodeSet containing all neighbors of the node specified node that are also contained in this set.

getInfo() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getInfo() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getInfo() - Method in class org.jfree.chart.renderer.RendererState

Returns the plot rendering info.

getInformationLazy(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionService

getIngoing() - Method in class org.graffiti.graphics.PortsAttribute

Returns the 'ingoing'-value of the encapsulated ports.

getInitialAmount(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper

Returns the initial amount of a species

getInitialAssignmentHeadlines(Graph) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLInitialAssignmentHelper

getInitialConcentration(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper

Returns the initial concentration of a species

getInitialDelay() - Method in class org.jfree.chart.ChartPanel

Returns the initial tooltip delay value used inside this chart panel.

getInitialValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper

getInitTitle() - Method in class org.graffiti.editor.GraffitiFrame

getInitTitle() - Method in class org.graffiti.editor.GraffitiInternalFrame

getInMessages() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network.BroadCastTask

getInNeighbors() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getInNeighbors() - Method in class org.graffiti.graph.AbstractNode

Returns a collection containing the neighbor nodes belonging to incoming edges.

getInNeighbors() - Method in interface org.graffiti.graph.Node

Returns a collection containing the neighbor nodes belonging to incoming edges.

getInNeighborsIterator() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getInNeighborsIterator() - Method in class org.graffiti.graph.AbstractNode

Returns an iterator over the neighbor nodes belonging to incoming edges.

getInNeighborsIterator() - Method in interface org.graffiti.graph.Node

Returns an iterator over the neighbor nodes belonging to incoming edges.

getInnerClusterEdges(Collection<Edge>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectEdgesAlgorithm

getInnerGap() - Method in class org.jfree.chart.StandardLegend

Returns the inner gap for the legend.

getInnerNodes() - Method in class org.vanted.plugins.layout.multilevelframework.MergedNode

getInput(Object, String, Object...) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.MyInputHelper

getInput(Object, String, Object...) - Static method in class org.graffiti.editor.dialog.DefaultParameterDialog

getInputMap() - Method in class org.graffiti.editor.GlobalHotkeyManager

getInputSerializers() - Method in interface org.graffiti.plugin.GenericPlugin

Returns the input serializers the plugin provides.

getInputSerializers() - Method in class org.graffiti.plugin.GenericPluginAdapter

Returns the input serializers the plugin provides.

getInputStream() - Method in class org.graffiti.plugin.io.resources.IOurl

getInputStream(IOurl) - Method in class org.graffiti.plugin.io.resources.FileSystemHandler

getInputStream(IOurl) - Method in class org.graffiti.plugin.io.resources.FTPhandler

getInputStream(IOurl) - Method in class org.graffiti.plugin.io.resources.HTTPhandler

getInputStream(IOurl) - Method in class org.graffiti.plugin.io.resources.HTTPShandler

getInputStream(IOurl) - Method in interface org.graffiti.plugin.io.resources.ResourceIOHandler

getInputStreamMemoryCached(InputStream) - Static method in class org.graffiti.plugin.io.resources.ResourceIOManager

getInputStreamMemoryCached(IOurl) - Static method in class org.graffiti.plugin.io.resources.ResourceIOManager

getInputVector() - Method in class qmwi.kseg.som.diagram.ClassesObject

Insert the method's description here.

getInputVector() - Method in class qmwi.kseg.som.diagram.ClassesObjectInputVector

Insert the method's description here.

getInputVector(int) - Static method in class qmwi.kseg.som.diagram.ClassesAll

Insert the method's description here.

getInputVectors() - Static method in class qmwi.kseg.som.diagram.ClassesAll

Insert the method's description here.

getInputVectorSize() - Method in class qmwi.kseg.som.diagram.ClassesObjectInputVector

Insert the method's description here.

getInputVectorSize() - Method in class qmwi.kseg.som.Map

getInputVectorsSize() - Static method in class qmwi.kseg.som.diagram.ClassesAll

Insert the method's description here.

getInputVectorValue(int) - Method in class qmwi.kseg.som.diagram.ClassesObject

Insert the method's description here.

getInputVectorValue(int, int) - Method in class qmwi.kseg.som.diagram.ClassesClass

Insert the method's description here.

getInsets() - Method in class org.jfree.chart.plot.Plot

Returns the insets for the plot area.

getInspectorContainer() - Method in class org.graffiti.plugins.inspectors.defaults.Inspector

Returns the InspectorContainer.

getInspectorPlugin() - Method in class org.graffiti.editor.MainFrame

getInspectorTabs() - Method in class de.ipk_gatersleben.ag_nw.graffiti.IPK_PluginAdapter

getInspectorTabs() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartAttributePlugin

getInspectorTabs() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.DBEplugin

getInspectorTabs() - Method in interface org.graffiti.plugin.EditorPlugin

getInspectorTabs() - Method in class org.graffiti.plugin.EditorPluginAdapter

getInstallPath() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.DotLayoutAlgorithm

getInstance() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.AddonManagerPlugin

getInstance() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggAPIServiceHelper

getInstance() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggBriteService

getInstance() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeService

getInstance() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartComponentManager

getInstance() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotationManager

getInstance() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataProcessingManager

getInstance() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TemplateFileManager

getInstance() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.RSSFeedManager

getInstance() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.WorkflowHelper

Deprecated.

getInstance() - Static method in class de.ipk_gatersleben.ag_pbi.datahandling.TemplateManager

getInstance() - Static method in class org.graffiti.attributes.AttributeManager

getInstance() - Static method in class org.graffiti.core.ImageBundle

Returns the only instance of this class.

getInstance() - Static method in class org.graffiti.core.StringBundle

Returns the only instance of this class.

getInstance() - Static method in class org.graffiti.editor.actions.FileHandlingManager

getInstance() - Static method in class org.graffiti.editor.GlobalHotkeyManager

getInstance() - Static method in class org.graffiti.editor.GravistoService

Returns the single instance of this class.

getInstance() - Static method in class org.graffiti.editor.MainFrame

getInstance() - Static method in class org.graffiti.managers.PreferenceManager

getInstance() - Static method in class org.graffiti.plugins.inspectors.defaults.EdgeTab

getInstance() - Static method in class org.graffiti.plugins.inspectors.defaults.GraphTab

getInstance() - Static method in class org.graffiti.plugins.inspectors.defaults.NodeTab

getInstance() - Static method in class org.graffiti.plugins.modes.defaults.MegaMoveTool

getInstance() - Static method in class org.vanted.scaling.DPIHelper

getInstance() - Static method in class org.vanted.VantedPreferences

getInstance(Axis) - Static method in class org.jfree.chart.ui.AxisPropertyEditPanel

A static method that returns a panel that is appropriate for the axis type.

getInstance(ColorBar) - Static method in class org.jfree.chart.ui.ColorBarPropertyEditPanel

A static method that returns a panel that is appropriate for the axis type.

getInt() - Method in class org.graffiti.plugin.algorithm.ThreadSafeOptions

getInt(String, int) - Method in class org.graffiti.options.GravistoPreferences

getInteger() - Method in class org.graffiti.attributes.IntegerAttribute

Returns the value of this object.

getInteger() - Method in class org.graffiti.plugin.parameter.IntegerParameter

Returns the value of this parameter as an Integer.

getInteger(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getInteger(String) - Method in class org.graffiti.attributes.AbstractAttributable

Returns the value of theAttributeat the given path.

getInteger(String) - Method in interface org.graffiti.attributes.Attributable

Returns the value of the Attribute at the given path.

getInterClusterEdges(Collection<Edge>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectEdgesAlgorithm

getInteriorGap() - Method in class org.jfree.chart.plot.PiePlot

Returns the interior gap, measured as a percentage of the available drawing space.

getInternalEdgeIndex(Edge, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.PatternAttributeUtils

Returns the internal edge index for the given edge and position.

getInternalNodeIndex(Node, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.PatternAttributeUtils

Returns the internal node index for the given node and position.

getIntersection(Line2D) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.MultiRectangleShape

getIntersection(Line2D) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNCircleShape

getIntersection(Line2D) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNMultiStadiumShape

getIntersection(Line2D) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNProcessShape

getIntersection(Line2D) - Method in interface org.graffiti.plugin.view.NodeShape

Calculates the intersection point between this node shape and a line.

getIntersection(Line2D) - Method in class org.graffiti.plugins.views.defaults.CircleNodeShape

Calculates the intersection between this shape and a line.

getIntersection(Line2D) - Method in class org.graffiti.plugins.views.defaults.CircularNodeShape

Calculates the intersection between this shape and a line.

getIntersection(Line2D) - Method in class org.graffiti.plugins.views.defaults.EllipseNodeShape

Calculates the intersection between this ellipse and a line.

getIntersection(Line2D) - Method in class org.graffiti.plugins.views.defaults.PolygonalNodeShape

getIntersection(Line2D) - Method in class org.graffiti.plugins.views.defaults.RectangleNodeShape

getIntersection(Line2D, Line2D) - Static method in class org.graffiti.util.GraphicHelper

Returns the point where both lines intersect.

getIntersectionOfRoundRectangleAndLine(Line2D, Rectangle2D, double) - Static method in class org.graffiti.plugins.views.defaults.RectangleNodeShape

getIntersectionsWithCircle(Ellipse2D, Line2D) - Static method in class org.graffiti.plugins.views.defaults.CircularNodeShape

getIntersectionWithCircle(Ellipse2D, Line2D) - Static method in class org.graffiti.plugins.views.defaults.CircularNodeShape

Calculates the intersection between a circle and a line.

getIntervalPositionFactor() - Method in class org.jfree.data.CategoryTableXYDataset

Returns the interval position factor.

getIntervalPositionFactor() - Method in class org.jfree.data.DefaultTableXYDataset

Returns the interval position factor.

getIntervalPositionFactor() - Method in class org.jfree.data.XYSeriesCollection

Returns the interval position factor.

getIntervalWidth() - Method in class org.jfree.data.CategoryTableXYDataset

returns the full interval width.

getIntervalWidth() - Method in class org.jfree.data.DefaultTableXYDataset

returns the full interval width.

getIntervalWidth() - Method in class org.jfree.data.XYSeriesCollection

Returns the interval width.

getIoManager() - Method in class org.graffiti.editor.MainFrame

DOCUMENT ME!

getIsAllowedFeature(FeatureSet) - Static method in class org.ReleaseInfo

getIsAutoLoopDuration() - Method in class org.vanted.animation.Animator

Sets whether the animator is automatically calculating the animator loop duration.

getIsAutoLoopDuration() - Method in class org.vanted.animation.AnimatorData

getIsDouble() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.SpecialTableValue

getIsPartOfGroup(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getItem() - Method in class org.jfree.chart.DrawableLegendItem

Returns the legend item.

getItem() - Method in class org.jfree.chart.entity.XYItemEntity

Returns the item index.

getItem(int) - Method in class org.jfree.data.MatrixSeries

Return the matrix item at the specified index.

getItem(int) - Method in class org.jfree.data.NormalizedMatrixSeries

Returns an item.

getItem(Object) - Method in class org.jfree.data.DefaultIntervalCategoryDataset

Returns an item.

getItemColumn(int) - Method in class org.jfree.data.MatrixSeries

Returns the column of the specified item.

getItemCount() - Method in class org.jfree.chart.LegendItemCollection

Returns the number of legend items in the collection.

getItemCount() - Method in class org.jfree.chart.plot.PieLabelDistributor

Returns the number of items in the list.

getItemCount() - Method in class org.jfree.chart.renderer.OutlierList

Returns the number of outliers in the list.

getItemCount() - Method in class org.jfree.data.CategoryTableXYDataset

Returns the number of x values in the dataset.

getItemCount() - Method in class org.jfree.data.CategoryToPieDataset

Returns the number of items (values) in the collection.

getItemCount() - Method in class org.jfree.data.DefaultIntervalCategoryDataset

Returns the item count.

getItemCount() - Method in class org.jfree.data.DefaultKeyedValues

Returns the number of items (values) in the collection.

getItemCount() - Method in class org.jfree.data.DefaultPieDataset

Returns the number of items in the dataset.

getItemCount() - Method in class org.jfree.data.DefaultTableXYDataset

Returns the number of x values in the dataset.

getItemCount() - Method in class org.jfree.data.gantt.TaskSeries

Returns the number of items in the series.

getItemCount() - Method in class org.jfree.data.JDBCXYDataset

Returns the number of items in all series.

getItemCount() - Method in class org.jfree.data.KeyedObjects

Returns the number of items (values) in the collection.

getItemCount() - Method in class org.jfree.data.MatrixSeries

Returns the number of items in the series.

getItemCount() - Method in interface org.jfree.data.TableXYDataset

Returns the number of items every series.

getItemCount() - Method in class org.jfree.data.time.TimePeriodValues

Returns the number of items in the series.

getItemCount() - Method in class org.jfree.data.time.TimeSeries

Returns the number of items in the series.

getItemCount() - Method in class org.jfree.data.time.TimeTableXYDataset

Returns the number of items every series.

getItemCount() - Method in interface org.jfree.data.Values

Returns the number of items (values) in the collection.

getItemCount() - Method in class org.jfree.data.XYSeries

Returns the number of items in the series.

getItemCount(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyXML_XYDataset

getItemCount(int) - Method in class org.jfree.chart.demo.EmptyXYDataset

Returns the number of items in the specified series.

getItemCount(int) - Method in class org.jfree.chart.demo.SampleSignalDataset

Returns the number of items in a series.

getItemCount(int) - Method in class org.jfree.chart.demo.SampleXYDataset

Returns the number of items in the specified series.

getItemCount(int) - Method in class org.jfree.chart.demo.SampleXYDataset2

Returns the number of items in the specified series.

getItemCount(int) - Method in class org.jfree.chart.demo.SampleXYSymbolicDataset

Returns the number of items in the specified series.

getItemCount(int) - Method in class org.jfree.chart.demo.SampleXYZDataset

Returns the number of items in a series.

getItemCount(int) - Method in class org.jfree.chart.demo.SampleYSymbolicDataset

Returns the number of items in the specified series.

getItemCount(int) - Method in class org.jfree.chart.demo.SimpleIntervalXYDataset

Returns the number of items in a series.

getItemCount(int) - Method in class org.jfree.chart.demo.SimpleIntervalXYDataset2

Returns the number of items in a series.

getItemCount(int) - Method in class org.jfree.data.CategoryTableXYDataset

Returns the number of items in the specified series.

getItemCount(int) - Method in class org.jfree.data.CombinedDataset

Returns the number of items in a series.

getItemCount(int) - Method in class org.jfree.data.DefaultContourDataset

Returns the number of items in the specified series.

getItemCount(int) - Method in class org.jfree.data.DefaultHighLowDataset

Returns the number of items in the specified series.

getItemCount(int) - Method in class org.jfree.data.DefaultTableXYDataset

Returns the number of items in the specified series.

getItemCount(int) - Method in class org.jfree.data.DefaultWindDataset

Returns the number of items in a series.

getItemCount(int) - Method in class org.jfree.data.JDBCXYDataset

Returns the number of items in the specified series.

getItemCount(int) - Method in class org.jfree.data.MatrixSeriesCollection

Returns the number of items in the specified series.

getItemCount(int) - Method in class org.jfree.data.OHLCDataset

Returns the item count for the specified series.

getItemCount(int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerXYDataset

Returns the number of items in the specified series.

getItemCount(int) - Method in class org.jfree.data.statistics.HistogramDataset

Returns the number of data items for a series.

getItemCount(int) - Method in class org.jfree.data.SubSeriesDataset

Returns the number of items in a series.

getItemCount(int) - Method in class org.jfree.data.time.DynamicTimeSeriesCollection

Returns the number of items in a series.

getItemCount(int) - Method in class org.jfree.data.time.TimePeriodValuesCollection

Returns the number of items in the specified series.

getItemCount(int) - Method in class org.jfree.data.time.TimeSeriesCollection

Returns the number of items in the specified series.

getItemCount(int) - Method in class org.jfree.data.time.TimeTableXYDataset

Returns the number of items in a series.

getItemCount(int) - Method in class org.jfree.data.XYBarDataset

Returns the number of items in a series.

getItemCount(int) - Method in interface org.jfree.data.XYDataset

Returns the number of items in a series.

getItemCount(int) - Method in class org.jfree.data.XYSeriesCollection

Returns the number of items in the specified series.

getItemFont() - Method in class org.jfree.chart.StandardLegend

Returns the series label font.

getItemLabelAnchor() - Method in class org.jfree.chart.labels.ItemLabelPosition

Returns the item label anchor.

getItemLabelAnchor(int, int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Deprecated.

Use getPositiveItemLabelPosition() or getNegativeItemLabelPosition().

getItemLabelAnchor(int, int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Deprecated.

Use getPositiveItemLabelPosition() or getNegativeItemLabelPosition().

getItemLabelAnchorOffset() - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the item label anchor offset.

getItemLabelAngle(int, int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Deprecated.

Use getPositiveItemLabelPosition()/getNegativeItemLabelPosition().

getItemLabelFont() - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the font used for all item labels.

getItemLabelFont() - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the font used for all item labels.

getItemLabelFont() - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the font used for all item labels.

getItemLabelFont(int, int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the font for an item label.

getItemLabelFont(int, int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the font for an item label.

getItemLabelFont(int, int) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the font for an item label.

getItemLabelPaint() - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the paint used for all item labels.

getItemLabelPaint() - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the paint used for all item labels.

getItemLabelPaint() - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the paint used for all item labels.

getItemLabelPaint(int, int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the paint used to draw an item label.

getItemLabelPaint(int, int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the paint used to draw an item label.

getItemLabelPaint(int, int) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the paint used to draw an item label.

getItemLabelRotationAnchor(int, int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Deprecated.

Use getPositiveItemLabelPosition()/getNegativeItemLabelPosition().

getItemLabelTextAnchor(int, int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Deprecated.

Use getPositiveItemLabelPosition()/getNegativeItemLabelPosition().

getItemLabelTextAnchor(int, int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Deprecated.

Use getPositiveItemLabelPosition() or getNegativeItemLabelPosition().

getItemLineVisible(int, int) - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer

Returns the flag used to control whether or not the shape for an item is visible.

getItemMargin() - Method in class org.jfree.chart.renderer.BarRenderer

Returns the item margin as a percentage of the available space for all bars.

getItemMargin() - Method in class org.jfree.chart.renderer.BoxAndWhiskerRenderer

Returns the item margin.

getItemMargin() - Method in class org.jfree.chart.renderer.LevelRenderer

Returns the item margin.

getItemOutlinePaint(int, int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the paint used to outline data items as they are drawn.

getItemOutlinePaint(int, int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the paint used to outline data items as they are drawn.

getItemOutlinePaint(int, int) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the paint used to outline data items as they are drawn.

getItemOutlineStroke(int, int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the stroke used to outline data items.

getItemOutlineStroke(int, int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the stroke used to outline data items.

getItemOutlineStroke(int, int) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the stroke used to outline data items.

getItemPaint() - Method in class org.jfree.chart.StandardLegend

Returns the series label paint.

getItemPaint(int, int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the paint used to fill data items as they are drawn.

getItemPaint(int, int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the paint used to fill data items as they are drawn.

getItemPaint(int, int) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the paint used to fill data items as they are drawn.

getItemRow(int) - Method in class org.jfree.data.MatrixSeries

Returns the row of the specified item.

getItems() - Method in class org.jfree.data.time.TimeSeries

Returns the list of data items for the series (the list contains TimeSeriesDataItem objects and is unmodifiable).

getItems() - Method in class org.jfree.data.XYSeries

Returns the list of data items for the series (the list contains XYDataItem objects and is unmodifiable).

getItemSeparator() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.WebsiteGeneration

getItemShape(int, int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns a shape used to represent a data item.

getItemShape(int, int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns a shape used to represent a data item.

getItemShape(int, int) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns a shape used to represent a data item.

getItemShapeFilled(int, int) - Method in class org.jfree.chart.renderer.LineAndShapeRenderer

Returns the flag used to control whether or not the shape for an item is filled.

getItemShapeFilled(int, int) - Method in class org.jfree.chart.renderer.StandardXYItemRenderer

Returns the flag used to control whether or not the shape for an item is filled.

getItemShapeFilled(int, int) - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer

Returns the flag used to control whether or not the shape for an item is filled.

getItemShapeVisible(int, int) - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer

Returns the flag used to control whether or not the shape for an item is visible.

getItemStroke(int, int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the stroke used to draw data items.

getItemStroke(int, int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the stroke used to draw data items.

getItemStroke(int, int) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the stroke used to draw data items.

getItemURLGenerator(int, int) - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer

Returns the URL generator for a data item.

getItemURLGenerator(int, int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the URL generator for an item.

getJarFile() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.Addon

getJarMd5Pairs() - Static method in class org.vanted.updater.CalcClassPathJarsMd5

getJavaVersion() - Static method in class org.Java_1_5_compatibility

getJDOMfromDOM(Document) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.JDOM2DOM

getJDOMfromDOM(Document) - Static method in class org.graffiti.plugin.XMLHelper

getJMenuBar() - Method in class org.graffiti.editor.MainFrame

getKeggCompoundsOfMap(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggHelper

getKeggElmentsOfMap(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggHelper

getKeggEnzymesByReactionId(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggHelper

getKeggEnzymesOfMap(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggHelper

getKeggGenesOfMap(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggHelper

getKeggGraphicsBgColor(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKeggGraphicsFgColor(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKeggGraphicsHeight(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKeggGraphicsTitle(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKeggGraphicsType(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKeggGraphicsWidth(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKeggGraphicsX(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKeggGraphicsY(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKeggId(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.KeggId

getKeggId(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKeggId(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggHelper

getKeggId(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKeggIds(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKeggImageUrl(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKeggImageUrl(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKeggKOsOfMap(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggHelper

getKEGGlibText() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_dbe.MenuItemInfoDialog

Deprecated.

getKEGGLicense() - Static method in class org.vanted.KeggAccess

Full license available at http://www.genome.jp/kegg/legal.html

getKeggLinkUrl(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKeggLinkUrl(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKeggLinkUrl(Node, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKeggMapNumber(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKeggName(GraphElement, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelperBio

getKeggOrg(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKEGGorganismFromUser(List<OrganismEntry>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.TabKegg

getKeggPathwayGravistoGraph(KeggPathwayEntry, boolean, Color) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggService

getKeggPathwayGravistoGraph(KeggPathwayEntry, boolean, Color, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggService

getKeggReactionProducts(Edge) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKeggReactions(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKeggReactionsOfMap(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggHelper

getKeggReactionSubstrates(Edge) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKeggReactionType(Attributable, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKeggReactionTypes(Attributable) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKeggTitle(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKeggType(GraphElement, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelperBio

getKeggType(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKeggType(Node, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getKey() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathEntityType

getKey() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathGene

getKey() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathMolecule

getKey() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathPathway

getKey() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReaction

getKey() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReference

getKey() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.MyEntry

getKey() - Method in class org.jfree.chart.plot.PieLabelRecord

Returns the key for the section that the label applies to.

getKey() - Method in class org.jfree.data.DefaultKeyedValue

Returns the key.

getKey() - Method in class org.jfree.data.DefaultKeyedValueDataset

Returns the key associated with the value, or null if the dataset has no data item.

getKey() - Method in class org.jfree.data.KeyedObject

Returns the key.

getKey() - Method in interface org.jfree.data.KeyedValue

Returns the key associated with the value.

getKey() - Method in class org.jfree.data.xml.ItemHandler

Returns the key that has been read by the handler, or null.

getKey(int) - Method in class org.jfree.data.CategoryToPieDataset

Returns a key.

getKey(int) - Method in class org.jfree.data.DefaultKeyedValues

Returns a key.

getKey(int) - Method in class org.jfree.data.DefaultPieDataset

Returns the key for an item.

getKey(int) - Method in class org.jfree.data.KeyedObjects

Returns a key.

getKey(int) - Method in interface org.jfree.data.KeyedValues

Returns the key associated with an item (value).

getKeys() - Method in class org.jfree.data.CategoryToPieDataset

Returns the keys.

getKeys() - Method in class org.jfree.data.DefaultKeyedValues

Returns the keys for the values in the collection.

getKeys() - Method in class org.jfree.data.DefaultPieDataset

Returns the categories in the dataset.

getKeys() - Method in class org.jfree.data.KeyedObjects

Returns the keys.

getKeys() - Method in interface org.jfree.data.KeyedValues

Returns the keys for the values in the collection.

getKgmlColor(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.kgmlColor

getKgmlComponentElement(IdRef) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Component

getKgmlDocument() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway

Use getPathwayFromKGML to read a KGML document and to create pathway object.

getKgmlEntryElement(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Entry

getKgmlGraphicsElement() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Graphics

getKgmlReactionElement() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Reaction

getKgmlRelationElement() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation

getKgmlSubtypeElement() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Subtype

getKgmlVersion() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggHelper

getKGMLversionSelectionCombobox() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggHelper

getkId() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggDatabases

getKineticLawFunction(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the function of a kinetic law

getKnownOptionPanes() - Method in class org.graffiti.editor.GravistoService

getKoDbLinks() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KoEntry

getKoDbLinks(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KoEntry

getKoDefinition() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KoEntry

getKoID() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KoEntry

getKoName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KoEntry

getL() - Method in class org.color.Color_CIE_Lab

getLabel() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.GraphElementHelper

getLabel() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getLabel() - Method in class org.graffiti.graphics.LabelAttribute

Returns the 'label'-value of the encapsulated label.

getLabel() - Method in class org.graffiti.plugins.inspectors.defaults.ClickableInspectorLabel

getLabel() - Method in class org.jfree.chart.axis.Axis

Returns the label for the axis.

getLabel() - Method in class org.jfree.chart.axis.CategoryTick

Returns the label.

getLabel() - Method in class org.jfree.chart.LegendItem

Returns the label.

getLabel() - Method in class org.jfree.chart.plot.Marker

Returns the label (if null no label is displayed).

getLabel() - Method in class org.jfree.chart.plot.PieLabelRecord

Returns the label.

getLabel() - Method in class org.jfree.chart.ui.AxisPropertyEditPanel

Returns the current axis label.

getLabel(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getLabel(int, Attributable, String) - Static method in class org.AttributeHelper

getLabel(int, Edge) - Static method in class org.AttributeHelper

Get EdgeLabelAttribute (if available)

getLabel(int, Node) - Static method in class org.AttributeHelper

Get NodeLabelAttribute (if available)

getLabel(Attributable, String) - Static method in class org.AttributeHelper

Gets the Label of a Node

getLabelAlignment(int, Node) - Static method in class org.AttributeHelper

getLabelAnchor() - Method in class org.jfree.chart.axis.CategoryLabelPosition

Returns the text block anchor.

getLabelAnchor() - Method in class org.jfree.chart.axis.CategoryTick

Returns the label anchor.

getLabelAnchor() - Method in class org.jfree.chart.plot.Marker

Returns the label anchor.

getLabelAngle() - Method in class org.jfree.chart.axis.Axis

Returns the angle of the axis label.

getLabelBackgroundPaint() - Method in class org.jfree.chart.plot.PiePlot

Returns the section label background paint.

getLabelColor(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

getLabelColor(Node) - Static method in class org.AttributeHelper

getLabelConsumption(Edge, String) - Static method in class org.AttributeHelper

getLabelFont() - Method in class org.jfree.chart.axis.Axis

Returns the font for the axis label.

getLabelFont() - Method in class org.jfree.chart.plot.CompassPlot

Returns the label font.

getLabelFont() - Method in class org.jfree.chart.plot.Marker

Returns the label font.

getLabelFont() - Method in class org.jfree.chart.plot.PiePlot

Returns the section label font.

getLabelFont() - Method in class org.jfree.chart.ui.AxisPropertyEditPanel

Returns the current label font.

getLabelFont(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

getLabelFormat() - Method in class org.jfree.chart.labels.AbstractCategoryItemLabelGenerator

Returns the label format string.

getLabelFrameSetting() - Method in class org.graffiti.graphics.LabelAttribute

getLabelFrameSetting() - Method in class org.graffiti.plugins.attributecomponents.simplelabel.LabelComponent

getLabelFromNode(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache.MyTools

getLabelFromNode(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.MyTools

getLabelGap() - Method in class org.jfree.chart.plot.PiePlot

Returns the gap between the edge of the pie and the labels, expressed as a percentage of the plot width.

getLabelGenerator() - Method in class org.jfree.chart.plot.PiePlot

Returns the section label generator.

getLabelGenerator(int, int) - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer

Returns the label generator for a data item.

getLabelGenerator(int, int) - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer

Returns the label generator for a data item.

getLabelGenerator(int, int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the item label generator for the specified data item.

getLabelGenerator(int, int) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the label generator for a data item.

getLabelHeight() - Method in class org.jfree.chart.plot.PieLabelRecord

Returns the label height.

getLabelInsets() - Method in class org.jfree.chart.axis.Axis

Returns the insets for the label (that is, the amount of blank space that should be left around the label).

getLabelInsets() - Method in class org.jfree.chart.ui.AxisPropertyEditPanel

Returns the current label insets value

getLabelLinkMargin() - Method in class org.jfree.chart.plot.PiePlot

Returns the margin (expressed as a percentage of the width or height) between the edge of the pie and the link point.

getLabelLinkPaint() - Method in class org.jfree.chart.plot.PiePlot

Returns the paint used for the lines that connect pie sections to their corresponding labels.

getLabelLinkStroke() - Method in class org.jfree.chart.plot.PiePlot

Returns the stroke used for the label linking lines.

getLabelOffset() - Method in class org.graffiti.graphics.LabelAttribute

Get the relative offset of label position from center of a node.

getLabelOffset() - Method in class org.jfree.chart.annotations.XYPointerAnnotation

Sets the label offset.

getLabelOffset() - Method in class org.jfree.chart.plot.Marker

Returns the label offset.

getLabelOffset(Attributable) - Method in class org.AttributeHelper

Get the relative offset of label position from center of a node.

getLabelOutlinePaint() - Method in class org.jfree.chart.plot.PiePlot

Returns the section label outline paint.

getLabelOutlineStroke() - Method in class org.jfree.chart.plot.PiePlot

Returns the section label outline stroke.

getLabelPaint() - Method in class org.jfree.chart.axis.Axis

Returns the color/shade used to draw the axis label.

getLabelPaint() - Method in class org.jfree.chart.plot.Marker

Returns the label paint.

getLabelPaint() - Method in class org.jfree.chart.plot.PiePlot

Returns the section label paint.

getLabelPaint() - Method in class org.jfree.chart.ui.AxisPropertyEditPanel

Returns the current label paint.

getLabelPath() - Static method in class org.AttributeHelper

Get the Labelpath

getLabelPosition() - Method in class org.jfree.chart.DrawableLegendItem

Returns the label position.

getLabelPosition(Attributable) - Static method in class org.AttributeHelper

getLabelPosition(RectangleEdge) - Method in class org.jfree.chart.axis.CategoryLabelPositions

Returns the category label position specification for an axis at the given location.

getLabelProduction(Edge, String) - Static method in class org.AttributeHelper

getLabels(GraphElement) - Static method in class org.AttributeHelper

getLabels(GraphElement, boolean) - Static method in class org.AttributeHelper

getLabelShadowPaint() - Method in class org.jfree.chart.plot.PiePlot

Returns the section label shadow paint.

getLabelTextAnchor() - Method in class org.jfree.chart.plot.Marker

Returns the label text anchor.

getLabelType() - Method in class org.jfree.chart.plot.CompassPlot

Returns the label type.

getLargerTickUnit(TickUnit) - Method in class org.jfree.chart.axis.StandardTickUnitSource

Returns a tick unit that is larger than the supplied unit.

getLargerTickUnit(TickUnit) - Method in class org.jfree.chart.axis.TickUnits

Returns a tick unit that is larger than the supplied unit.

getLargerTickUnit(TickUnit) - Method in interface org.jfree.chart.axis.TickUnitSource

Returns a tick unit that is larger than the supplied unit.

getLastBarPaint() - Method in class org.jfree.chart.renderer.WaterfallBarRenderer

Returns the paint used to draw the last bar.

getLastBuildDate() - Static method in class org.vanted.BuildInfo

Gets the last Vanted build number, as specified in the build file.

getLastBuildNumber() - Static method in class org.vanted.BuildInfo

Gets the last Vanted build number, as specified in the build file.

getLastComponentHeight() - Method in class org.graffiti.graphics.LabelAttribute

getLastComponentWidth() - Method in class org.graffiti.graphics.LabelAttribute

getLastMillisecond() - Method in class org.jfree.data.time.FixedMillisecond

Returns the last millisecond of the time period.

getLastMillisecond() - Method in class org.jfree.data.time.Millisecond

Returns the last millisecond of the time period.

getLastMillisecond() - Method in class org.jfree.data.time.RegularTimePeriod

Returns the last millisecond of the time period, evaluated in the default time zone.

getLastMillisecond(Calendar) - Method in class org.jfree.data.time.Day

Returns the last millisecond of the day, evaluated using the supplied calendar (which determines the time zone).

getLastMillisecond(Calendar) - Method in class org.jfree.data.time.FixedMillisecond

Returns the last millisecond of the time period.

getLastMillisecond(Calendar) - Method in class org.jfree.data.time.Hour

Returns the last millisecond of the hour.

getLastMillisecond(Calendar) - Method in class org.jfree.data.time.Millisecond

Returns the last millisecond of the time period.

getLastMillisecond(Calendar) - Method in class org.jfree.data.time.Minute

Returns the last millisecond of the minute.

getLastMillisecond(Calendar) - Method in class org.jfree.data.time.Month

Returns the last millisecond of the month, evaluated using the supplied calendar (which determines the time zone).

getLastMillisecond(Calendar) - Method in class org.jfree.data.time.Quarter

Returns the last millisecond of the Quarter, evaluated using the supplied calendar (which determines the time zone).

getLastMillisecond(Calendar) - Method in class org.jfree.data.time.RegularTimePeriod

Returns the last millisecond of the time period, evaluated using the supplied calendar (which incorporates a timezone).

getLastMillisecond(Calendar) - Method in class org.jfree.data.time.Second

Returns the last millisecond of the second.

getLastMillisecond(Calendar) - Method in class org.jfree.data.time.Week

Returns the last millisecond of the week, evaluated using the supplied calendar (which determines the time zone).

getLastMillisecond(Calendar) - Method in class org.jfree.data.time.Year

Returns the last millisecond of the year, evaluated using the supplied calendar (which determines the time zone).

getLastMillisecond(TimeZone) - Method in class org.jfree.data.time.RegularTimePeriod

Returns the last millisecond of the time period, evaluated within a specific time zone.

getLastModificationDateStr() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.SimpleModel

Get the date of last modification, in a human readable form.

getLastMouseE() - Static method in class org.graffiti.plugins.modes.defaults.MegaTools

getLastMouseSrc() - Static method in class org.graffiti.plugins.modes.defaults.MegaTools

getLastMovementPosition() - Static method in class org.graffiti.plugins.modes.defaults.MegaMoveTool

getLastStatusMessage() - Static method in class org.ErrorMsg

getLastUseAverageSetting() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMplugin

getLatestAngle() - Method in class org.jfree.chart.plot.PiePlotState

Returns the latest angle.

getLaunchGuiDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOManalysis

getLaunchGuiDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.ProcessHierarchynodesDepOnLeafNodes

getLaunchGuiDescription() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.launch_gui.LaunchGui

getLayout() - Method in class org.vanted.plugins.layout.stressminimization.BackgroundAlgorithm

getLayout(double[], double) - Static method in class info.clearthought.layout.TableLayout

getLayout(double, double) - Static method in class info.clearthought.layout.TableLayout

getLayout(double, double[]) - Static method in class info.clearthought.layout.TableLayout

getLayout(double, double, int, int) - Static method in class info.clearthought.layout.TableLayout

getLayout(int, int) - Static method in class info.clearthought.layout.TableLayout

getLayoutAlgorithms() - Static method in class org.vanted.plugins.layout.multilevelframework.LayoutAlgorithmWrapper

Find all currently available layout algorithms and returns those whitelisted.

getLayoutAlignmentX(Container) - Method in class info.clearthought.layout.TableLayout

Returns the alignment along the x axis.

getLayoutAlignmentY(Container) - Method in class info.clearthought.layout.TableLayout

Returns the alignment along the y axis.

getLayoutSupplier() - Method in class org.vanted.plugins.layout.stressminimization.StressMinimizationImplementation

getLeafNodes(Collection<Node>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getLeafNodes(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getLeafNodesClusterIDs(HashSet<Node>, NodeHelper) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateGOchildrenClustersHistogramAlgorithm

getLeft() - Method in class org.jfree.chart.axis.AxisSpace

Returns the left space.

getLeftArrow() - Method in class org.jfree.chart.axis.ValueAxis

Returns a shape that can be displayed as an arrow pointing left at the end of an axis line.

getLeftCategoryLabelPosition() - Method in class org.jfree.chart.axis.CategoryAxis

Deprecated.

Use getCategoryLabelPositions().getLabelPosition(RectangleEdge.LEFT).

getLeftDivider(JComponent, double, Color, int) - Static method in class info.clearthought.layout.TableLayout

getLeftOrRightIcon(boolean) - Static method in class org.FolderPanel

getLeftRightIcon(FolderPanel.Iconsize, boolean) - Static method in class org.FolderPanel

getLegend() - Method in class org.jfree.chart.event.LegendChangeEvent

Returns the legend that generated the event.

getLegend() - Method in class org.jfree.chart.JFreeChart

Returns the chart legend.

getLegendCollection() - Method in class org.jfree.chart.renderer.WaferMapRenderer

Builds the list of legend entries.

getLegendItem(int) - Method in class org.jfree.chart.renderer.DefaultPolarItemRenderer

Return the legend for the given series.

getLegendItem(int) - Method in interface org.jfree.chart.renderer.PolarItemRenderer

Return the legend for the given series.

getLegendItem(int, int) - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer

Returns a legend item for a series.

getLegendItem(int, int) - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer

Returns a legend item for a series.

getLegendItem(int, int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns a legend item for a series.

getLegendItem(int, int) - Method in class org.jfree.chart.renderer.StandardXYItemRenderer

Returns a legend item for a series.

getLegendItem(int, int) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns a legend item for a series from a dataset.

getLegendItemCount() - Method in class org.jfree.data.JDBCXYDataset

Returns the number of items that should be displayed in the legend.

getLegendItemLabels() - Method in class org.jfree.chart.plot.CompassPlot

Deprecated.

use getLegendItems().

getLegendItemLabels() - Method in class org.jfree.chart.plot.MeterPlot

Deprecated.

use getLegendItems().

getLegendItemLabels() - Method in class org.jfree.chart.plot.ThermometerPlot

Deprecated.

use getLegendItems().

getLegendItemLabels() - Method in class org.jfree.data.JDBCXYDataset

Returns the legend item labels.

getLegendItems() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the legend items for the plot.

getLegendItems() - Method in class org.jfree.chart.plot.CombinedDomainCategoryPlot

Returns a collection of legend items for the plot.

getLegendItems() - Method in class org.jfree.chart.plot.CombinedDomainXYPlot

Returns a collection of legend items for the plot.

getLegendItems() - Method in class org.jfree.chart.plot.CombinedRangeCategoryPlot

Returns a collection of legend items for the plot.

getLegendItems() - Method in class org.jfree.chart.plot.CombinedRangeXYPlot

Returns a collection of legend items for the plot.

getLegendItems() - Method in class org.jfree.chart.plot.CompassPlot

Returns the legend items for the plot.

getLegendItems() - Method in class org.jfree.chart.plot.MeterPlot

Returns null.

getLegendItems() - Method in class org.jfree.chart.plot.MultiplePiePlot

Returns a collection of legend items for the pie chart.

getLegendItems() - Method in class org.jfree.chart.plot.PiePlot

Returns a collection of legend items for the pie chart.

getLegendItems() - Method in class org.jfree.chart.plot.Plot

Returns the legend items for the plot.

getLegendItems() - Method in class org.jfree.chart.plot.PolarPlot

Returns the legend items for the plot.

getLegendItems() - Method in class org.jfree.chart.plot.ThermometerPlot

Returns the legend items for the plot.

getLegendItems() - Method in class org.jfree.chart.plot.WaferMapPlot

Return the legend items from the renderer.

getLegendItems() - Method in class org.jfree.chart.plot.XYPlot

Returns the legend items for the plot.

getLegendPropertyEditPanel() - Method in class org.jfree.chart.ui.ChartPropertyEditPanel

Returns a reference to the legend property sub-panel.

getLegendText() - Method in class org.jfree.chart.MeterLegend

Returns the legend text.

getLength() - Method in class org.jfree.data.Range

Returns the length of the range.

getLevel(int, int) - Method in class org.jfree.chart.demo.SampleSignalDataset

Returns the level.

getLevel(int, int) - Method in interface org.jfree.data.SignalsDataset

Returns the level.

getLevel(int, int) - Method in class org.jfree.data.SubSeriesDataset

Returns the level.

getLibraryNames() - Static method in class org.vanted.plugins.layout.adaptagrams.AdaptagramsLibrary

Return the names of the native Adaptagrams libraries for the different operating systems.

getLifesaverBoolean() - Static method in class org.vanted.scaling.DPIHelper

getLimit() - Method in class org.jfree.chart.plot.MultiplePiePlot

Returns the limit (as a percentage) below which small pie sections are aggregated.

getLine() - Method in class org.jfree.chart.DrawableLegendItem

Returns the list.

getLine() - Method in class org.jfree.chart.renderer.HighLow

Returns the line.

getLinearFit(Number[], Number[]) - Static method in class org.jfree.data.statistics.Statistics

Fits a straight line to a set of (x, y) data, returning the slope and intercept.

getLineCountForSubstanceNode(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

getLineMode() - Method in class org.graffiti.graphics.GraphElementGraphicAttribute

Returns the 'lineMode'-value of the encapsulated edge.

getLines() - Method in class placement.Graph

getLineStroke() - Method in class org.jfree.chart.DrawableLegendItem

Returns the stroke used to render the line for this series.

getLinesVisible() - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer

Returns a flag that controls whether or not lines are drawn for ALL series.

getLineType() - Method in class org.graffiti.graphics.EdgeGraphicAttribute

Returns the line type.

getLink() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Entry

getLinkArea() - Method in class org.jfree.chart.plot.PiePlotState

Returns the link area.

getLinkedPathwayIDs(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggHelper

getLinkPercent() - Method in class org.jfree.chart.plot.PieLabelRecord

Returns the link percent.

getList() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition.ConditionInfo

getListCellRendererComponent(JList<?>, Object, int, boolean, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.LineModeCellRenderer

getListCellRendererComponent(JList<?>, Object, int, boolean, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.MyChartCellRenderer

getListCellRendererComponent(JList<?>, Object, int, boolean, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.MyDiagramPlacementSettingCellRenderer

getListCellRendererComponent(JList<? extends SimpleModel>, SimpleModel, int, boolean, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.ListBiomodelsCellRenderer

getListCellRendererComponent(JList<? extends Algorithm>, Algorithm, int, boolean, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.algorithms.AlgorithmListCellRenderer

getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class org.graffiti.plugins.editcomponents.defaults.ArrowShapeCellRenderer

getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class org.graffiti.plugins.editcomponents.defaults.NodeShapeCellRenderer

getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class org.graffiti.plugins.views.defaults.DockingAttributeEditor.EdgeDockingRenderer

getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class org.graffiti.plugins.views.defaults.GradientFillAttributeEditor.NodeGradientRenderer

getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class org.jfree.chart.ui.PaletteSample

Returns a list cell renderer for the stroke, so the sample can be displayed in a list or combo.

getListCount() - Method in class org.jfree.chart.labels.CustomXYToolTipGenerator

Returns the number of tool tip lists stored by the renderer.

getListCount() - Method in class org.jfree.chart.urls.CustomPieURLGenerator

Returns the number of URL lists stored by the renderer.

getListCount() - Method in class org.jfree.chart.urls.CustomXYURLGenerator

Returns the number of URL lists stored by the renderer.

getListenerManager() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getListenerManager() - Method in interface org.graffiti.attributes.Attributable

Returns the ListenerManager asscociated to this Attributable.

getListenerManager() - Method in class org.graffiti.graph.AbstractGraph

Returns the ListenerManager of the current graph.

getListenerManager() - Method in class org.graffiti.graph.AbstractGraphElement

Returns the ListenerManager of the GraphElement.

getLoadActionListener(JTree) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkTab

getLoadedProjectEntities() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TabDBE

getLoadOnStartup() - Method in class org.graffiti.managers.pluginmgr.DefaultPluginEntry

Returns true if the plugin shall be loaded on the startup of the editor, false otherwise.

getLoadOnStartup() - Method in interface org.graffiti.managers.pluginmgr.PluginEntry

Returns true, if the plugin should be loaded at startup.

getLocalAlign() - Method in class org.graffiti.graphics.NodeLabelPositionAttribute

Returns the localAlign.

getLocalParameterID(Node, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the value of the attribute id

getLocalParameterName(Node, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the value of the attribute name

getLocalParameterUnits(Node, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the value of the attribute units

getLocalParameterValue(Node, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the value of the attribute value

getLog10TickLabelsFlag() - Method in class org.jfree.chart.axis.LogarithmicAxis

Returns the 'log10TickLabelsFlag' flag.

getLog2TargetDivControlValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionDatapoint

getLogicalConnection() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption

getLoginDataPanel() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.PasswordDialog

getLong() - Method in class org.graffiti.attributes.LongAttribute

Returns the value of this object.

getLong() - Method in class org.graffiti.plugin.algorithm.ThreadSafeOptions

getLong() - Method in class org.ObjectRef

getLong(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getLong(String) - Method in class org.graffiti.attributes.AbstractAttributable

Returns the value of the Attribute at the given path.

getLong(String) - Method in interface org.graffiti.attributes.Attributable

Returns the value of the Attribute at the given path.

getLoopDuration() - Method in class org.vanted.animation.Animation

Get's the loop duration of the animation.

getLoopDuration() - Method in class org.vanted.animation.Animator

Get's the loop duration of the animation.

getLoopDuration() - Method in class org.vanted.animation.AnimatorData

getLow() - Method in class org.jfree.data.OHLCDataItem

Returns the low value.

getLow(int, int) - Method in class org.jfree.data.CombinedDataset

Returns the low-value (as a double primitive) for an item within a series.

getLow(int, int) - Method in class org.jfree.data.DefaultHighLowDataset

Returns the low-value (as a double primitive) for an item within a series.

getLow(int, int) - Method in interface org.jfree.data.HighLowDataset

Returns the low-value (as a double primitive) for an item within a series.

getLow(int, int) - Method in class org.jfree.data.OHLCDataset

Returns the low-value (as a double primitive) for an item within a series.

getLow(int, int) - Method in class org.jfree.data.SubSeriesDataset

Returns the low-value (as a double primitive) for an item within a series.

getLowerBound() - Method in class org.jfree.chart.axis.ValueAxis

Returns the lower bound of the axis range.

getLowerBound() - Method in class org.jfree.chart.plot.ThermometerPlot

Returns the lower bound for the thermometer.

getLowerBound() - Method in class org.jfree.data.Range

Returns the lower bound for the range.

getLowerClip() - Method in class org.jfree.chart.renderer.BarRenderer

Returns the lower clip value.

getLowerDate() - Method in class org.jfree.data.DateRange

Returns the lower (earlier) date for the range.

getLowerMargin() - Method in class org.jfree.chart.axis.CategoryAxis

Returns the lower margin for the axis.

getLowerMargin() - Method in class org.jfree.chart.axis.ValueAxis

Returns the lower margin for the axis, expressed as a percentage of the axis range.

getLowerY() - Method in class org.jfree.chart.plot.PieLabelRecord

Returns the lower bound of the label.

getLowValue(int, int) - Method in class org.jfree.data.CombinedDataset

Returns the low-value for the specified series and item.

getLowValue(int, int) - Method in class org.jfree.data.DefaultHighLowDataset

Returns the low-value for one item in a series.

getLowValue(int, int) - Method in interface org.jfree.data.HighLowDataset

Returns the low-value for the specified series and item.

getLowValue(int, int) - Method in class org.jfree.data.OHLCDataset

Returns the low value.

getLowValue(int, int) - Method in class org.jfree.data.SubSeriesDataset

Returns the low-value for the specified series and item.

getMain() - Method in interface org.graffiti.managers.pluginmgr.Dependency

Returns the main.

getMain() - Method in class org.graffiti.managers.pluginmgr.PluginDependency

Returns the main.

getMain() - Method in class org.graffiti.managers.pluginmgr.PluginDescription

Returns the main.

getMainFrame() - Method in class org.graffiti.editor.GravistoService

Returns the main frame (application window).

getMainGraphs() - Method in class org.graffiti.editor.GravistoService

Returns a Vector which contains a list of graphs from the main view.

getMainSessions() - Method in class org.graffiti.editor.GravistoService

Returns a Vector which contains a list of sessions, loaded in the main view.

getMap() - Method in interface org.jfree.data.CombinationDataset

Returns a map or indirect indexing form our series into parent's series.

getMap() - Method in class org.jfree.data.CombinedDataset

Returns a map or indirect indexing form our series into parent's series.

getMap() - Method in class org.jfree.data.SubSeriesDataset

Returns a map or indirect indexing form our series into parent's series.

getMapLinkEdges(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelperBio

getMapLinkNodes(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelperBio

getMapName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggPathwayEntry

getMapOrg() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway

getMapPathToAttributable(HashSet<SearchType>, Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.TreeAttributSearcher

getMapPathToAttributable(HashSet<SearchType>, GraphElement) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.TreeAttributSearcher

getMappedAverageSampleData() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getMappedCtrlModifierText() - Static method in class org.vanted.osx.OSXSupport

Gets the textual representation of the mapped CTRL modifier.

getMappedData() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttribute

getMappedDataListFromGraphElement(GraphElement) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.Experiment2GraphHelper

Get a list of mapped xml data that has been assigned to a node (or other GraphElement).

getMappedDataListFromGraphElement(GraphElement, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.Experiment2GraphHelper

getMappedDataListFromNode(GraphElement) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

getMappedDataListSizeFromGraphElement(GraphElement) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.Experiment2GraphHelper

getMappedMaxSampleAvgValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getMappedMeanValuesForTimePoint(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getMappedMinSampleAvgValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getMappedSampleData() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.GraphElementHelper

getMappedSampleData() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getMappedSampleDataForTimePoint(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getMappedSeriesData() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.GraphElementHelper

getMappedSeriesData() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getMappedSeriesNames() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getMappedTimePointsCoveredByAllLines() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.GraphElementHelper

getMappedTimePointsCoveredByAllLines() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getMappedUniqueTimePoints() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.GraphElementHelper

getMappedUniqueTimePoints() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getMappingCountDescription(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggPathwayEntry

getMappingDataDocument(String, String, String, String, String, String, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getMappingDataListSize() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttribute

getMappings() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getMapRef() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Entry

getMargin() - Method in class org.jfree.chart.renderer.XYBarRenderer

Returns the margin which is a percentage amount by which the bars are trimmed.

getMarker() - Method in class org.jfree.chart.DrawableLegendItem

Get the marker.

getMarkerBand() - Method in class org.jfree.chart.axis.NumberAxis

Returns the (optional) marker band for the axis.

getMarkOffset() - Method in class org.jfree.chart.renderer.SignalRenderer

Returns the mark offset.

getMatchingNodesOfPattern() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.UllmannSubraphIsomAdjMatrixState

getMatchingNodesOfTarget() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.UllmannSubraphIsomAdjMatrixState

getMatchNodesInGraphForPattern() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.UllmannSubraphIsomAdjMatrixState

getMatchNodesInPatternForGraph() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.UllmannSubraphIsomAdjMatrixState

getMax() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverage

getMax() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverageInterface

getMax() - Method in class org.graffiti.plugin.parameter.DoubleParameter

Returns the max defined value of this Double parameter.

getMax() - Method in class org.graffiti.plugin.parameter.FloatParameter

Returns the max defined value of this Float parameter.

getMax() - Method in class org.graffiti.plugin.parameter.IntegerParameter

Returns the maximum of the interval.

getMax() - Method in interface org.graffiti.plugin.parameter.LimitableParameter

Returns the maximum value for this LimitableParameter.

getMax() - Method in class org.jfree.chart.axis.AxisState

Returns the maximum width/height.

getMax() - Method in class org.vanted.plugins.layout.stressminimization.parameters.SliderOptions

getMaxAddIncEdges(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.PatternAttributeUtils

Returns the maximal value for the additional incoming edges.

getMaxAddOutEdges(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.PatternAttributeUtils

Returns the maximal value for the additional outgoing edges.

getMaxBarWidth() - Method in class org.jfree.chart.renderer.BarRenderer

Returns the maximum bar width, as a percentage of the available drawing space.

getMaxCandleWidthInMilliseconds() - Method in class org.jfree.chart.renderer.CandlestickRenderer

Returns the maximum width (in milliseconds) of each candle.

getMaxCategoryLabelWidthRatio() - Method in class org.jfree.chart.axis.CategoryAxis

Returns the category label width ratio.

getMaxChipX() - Method in class org.jfree.data.WaferMapDataset

Returns the wafer x-dimension.

getMaxChipY() - Method in class org.jfree.data.WaferMapDataset

Returns the number of chips in the y-dimension.

getMaxCol() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.RSSFeedManager

getMaxEndIndex() - Method in class org.jfree.data.time.TimePeriodValues

Returns the index of the time period with the maximum end milliseconds.

getMaxHeight() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams

getMaxIcone() - Method in class org.jfree.chart.renderer.MinMaxCategoryRenderer

Gets the icon used to indicate the maximum value.

getMaximize() - Method in class org.graffiti.graphics.ImageAttribute

Returns the 'maximize'-value of the encapsulated image.

getMaximum() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.SampleEntry

getMaximum() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.ClusterSplashScreen

getMaximum() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.DBEsplashScreen

getMaximum() - Method in class org.graffiti.editor.SplashScreen

getMaximum() - Method in interface org.graffiti.util.ProgressViewer

getMaximum(ArrayList<ReplicateDouble>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentData

getMaximumAlternativeIDidx(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

Returns the highest index number of a alternative identifier.

getMaximumAxisValue() - Method in class org.jfree.chart.axis.ValueAxis

Deprecated.

Use getUpperBound().

getMaximumCol() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData

getMaximumCriticalValue() - Method in class org.jfree.data.DefaultMeterDataset

Deprecated.

Returns the maximum critical value.

getMaximumCriticalValue() - Method in interface org.jfree.data.MeterDataset

Deprecated.

Returns the upper value in the critical range.

getMaximumDate() - Method in class org.jfree.chart.axis.DateAxis

Returns the latest date visible on the axis.

getMaximumDomainValue() - Method in class org.jfree.chart.demo.SampleXYDataset2

Returns the maximum domain value.

getMaximumDomainValue() - Method in class org.jfree.data.CategoryTableXYDataset

getMaximumDomainValue() - Method in class org.jfree.data.DefaultTableXYDataset

getMaximumDomainValue() - Method in interface org.jfree.data.DomainInfo

Returns the maximum value in the dataset (or null if all the values in the domain are null).

getMaximumDomainValue() - Method in class org.jfree.data.time.DynamicTimeSeriesCollection

Returns the maximum value in the dataset (or null if all the values in the domain are null).

getMaximumDomainValue() - Method in class org.jfree.data.time.TimePeriodValuesCollection

Returns the maximum value in the dataset (or null if all the values in the domain are null).

getMaximumDomainValue() - Method in class org.jfree.data.time.TimeSeriesCollection

Returns the maximum value in the dataset (or null if all the values in the domain are null).

getMaximumDomainValue() - Method in class org.jfree.data.time.TimeTableXYDataset

Returns the maximum value in the dataset (or null if all the values in the domain are null).

getMaximumDomainValue() - Method in class org.jfree.data.XYSeriesCollection

Returns the maximum value of the dataset on the domain.

getMaximumDomainValue(Dataset) - Static method in class org.jfree.data.DatasetUtilities

Returns the maximum domain value for the specified dataset.

getMaximumDrawHeight() - Method in class org.jfree.chart.ChartPanel

Returns the maximum drawing height for charts.

getMaximumDrawWidth() - Method in class org.jfree.chart.ChartPanel

Returns the maximum drawing width for charts.

getMaximumExplodePercent() - Method in class org.jfree.chart.plot.PiePlot

Returns the maximum explode percent.

getMaximumItemCount() - Method in class org.jfree.data.time.TimeSeries

Returns the maximum number of items that will be retained in the series.

getMaximumItemCount() - Method in class org.jfree.data.XYSeries

Returns the maximum number of items that will be retained in the series.

getMaximumLabelWidth() - Method in class org.jfree.chart.plot.PiePlot

Returns the maximum label width as a percentage of the plot width.

getMaximumNormalValue() - Method in class org.jfree.data.DefaultMeterDataset

Deprecated.

Returns the maximum normal value.

getMaximumNormalValue() - Method in interface org.jfree.data.MeterDataset

Deprecated.

Returns the upper value in the normal range.

getMaximumPatternPosition(Edge) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.PatternAttributeUtils

Returns the maximal position value of the pattern container.

getMaximumPatternPosition(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.PatternAttributeUtils

Returns the maximal position value of the pattern container.

getMaximumRangeValue() - Method in class org.BioStatisticalCategoryDataset

getMaximumRangeValue() - Method in class org.jfree.chart.demo.SampleXYDataset2

Returns the maximum range value.

getMaximumRangeValue() - Method in class org.jfree.data.JDBCXYDataset

Returns the maximum data value in the dataset's range.

getMaximumRangeValue() - Method in interface org.jfree.data.RangeInfo

Returns the maximum value in the dataset's range (or null if all the values in the range are null).

getMaximumRangeValue() - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the maximum value in the dataset's range (or null if all the values in the range are null).

getMaximumRangeValue() - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerXYDataset

Returns the maximum value in the dataset's range (or null if all the values in the range are null).

getMaximumRangeValue() - Method in class org.jfree.data.statistics.DefaultStatisticalCategoryDataset

Returns the maximum value in the dataset's range (or null if all the values in the range are null).

getMaximumRangeValue() - Method in class org.jfree.data.time.DynamicTimeSeriesCollection

Returns the maximum range value.

getMaximumRangeValue(Dataset) - Static method in class org.jfree.data.DatasetUtilities

Returns the maximum range value for the specified dataset.

getMaximumRow() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData

getMaximumRow(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData

getMaximumSize() - Method in class org.graffiti.plugins.tools.zoomtool.ZoomChangeComponent

Deprecated.

getMaximumSize() - Method in class org.vanted.scaling.resources.ImmutableCheckBox

getMaximumStackedRangeValue(CategoryDataset) - Static method in class org.jfree.data.DatasetUtilities

Returns the maximum value in the dataset range, assuming that values in each category are "stacked".

getMaximumSynonymeIndex(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getMaximumSynonymeIndex(int) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getMaximumValue() - Method in class org.jfree.chart.ui.ColorBarPropertyEditPanel

Returns the current setting of the maximum value in the axis range.

getMaximumValue() - Method in class org.jfree.data.DefaultMeterDataset

Deprecated.

Returns the maximum value.

getMaximumValue() - Method in interface org.jfree.data.MeterDataset

Deprecated.

Returns the upper value in the overall range.

getMaximumVerticalDataValue() - Method in class org.jfree.chart.plot.ThermometerPlot

Returns the maximum value in either the domain or the range, whichever is displayed against the vertical axis for the particular type of plot implementing this interface.

getMaximumWarningValue() - Method in class org.jfree.data.DefaultMeterDataset

Deprecated.

Returns the maximum warning value.

getMaximumWarningValue() - Method in interface org.jfree.data.MeterDataset

Deprecated.

Returns the upper value in the warning range.

getMaximumXY(Collection<?>, double, int, int, boolean) - Static method in class org.graffiti.plugins.ios.exporters.graphviz.DOTSerializer

getMaximumXY(Collection<Node>, double, double, double, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

getMaximumXY(Collection<Node>, double, double, double, boolean, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

getMaxItemWidth() - Method in class org.jfree.chart.renderer.LevelRenderer

Returns the maximum width, as a percentage of the available drawing space.

getMaxIterations() - Method in class org.vanted.plugins.layout.stressminimization.StressMinParamModel.TerminationCheckboxGroup

getMaxMiddleIndex() - Method in class org.jfree.data.time.TimePeriodValues

Returns the index of the time period with the maximum middle milliseconds.

getMaxNodeHeight() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.TreeContainer

getMaxOrMinProb() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.CorrelationResult

getMaxOrMinR2() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.CorrelationResult

getMaxOutlier() - Method in class org.jfree.data.statistics.BoxAndWhiskerItem

Returns the maximum outlier.

getMaxOutlier(int, int) - Method in interface org.jfree.data.statistics.BoxAndWhiskerCategoryDataset

Returns the maximum outlier (non-farout) for an item.

getMaxOutlier(int, int) - Method in interface org.jfree.data.statistics.BoxAndWhiskerXYDataset

Returns the maximum value which is not a farout, ie Q3 + (interquartile range * farout coefficient).

getMaxOutlier(int, int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the maximum outlier (non farout) value for an item.

getMaxOutlier(int, int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerXYDataset

Returns the maximum value which is not a farout, ie Q3 + (interquartile range * farout coefficient).

getMaxOutlier(Comparable, Comparable) - Method in interface org.jfree.data.statistics.BoxAndWhiskerCategoryDataset

Returns the maximum outlier (non-farout) for an item.

getMaxOutlier(Comparable, Comparable) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the maximum outlier (non farout) value for an item.

getMaxR() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.CorrelationResult

getMaxRadius() - Method in class org.jfree.chart.plot.PolarPlot

Returns the upper bound of the radius axis.

getMaxRegularValue() - Method in class org.jfree.data.statistics.BoxAndWhiskerItem

Returns the maximum regular value.

getMaxRegularValue(int, int) - Method in interface org.jfree.data.statistics.BoxAndWhiskerCategoryDataset

Returns the maximum regular (non-outlier) value for an item.

getMaxRegularValue(int, int) - Method in interface org.jfree.data.statistics.BoxAndWhiskerXYDataset

Returns the max-value for the specified series and item.

getMaxRegularValue(int, int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the maximum regular (non outlier) value for an item.

getMaxRegularValue(int, int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerXYDataset

Returns the max-value for the specified series and item.

getMaxRegularValue(Comparable, Comparable) - Method in interface org.jfree.data.statistics.BoxAndWhiskerCategoryDataset

Returns the maximum regular (non-outlier) value for an item.

getMaxRegularValue(Comparable, Comparable) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the maximum regular (non outlier) value for an item.

getMaxRowCount() - Method in class org.FolderPanel

getMaxSaturationColor(ArrayList<Color>) - Static method in class org.color.ColorUtil

getMaxStartIndex() - Method in class org.jfree.data.time.TimePeriodValues

Returns the index of the time period with the maximum start milliseconds.

getMaxTrueCorrProb() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.CorrelationResult

getMaxUsefullValue() - Method in class org.vanted.plugins.layout.stressminimization.parameters.LandmarkParameter

Returns the maximum value that is a useful value for the algorithm

getMaxValue() - Method in class org.jfree.data.WaferMapDataset

Returns the maximum value stored in the dataset.

getMaxWidth() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams

getMaxX() - Method in class org.jfree.chart.DrawableLegendItem

Returns the largest X coordinate of the framing rectangle of this legend item.

getMaxY() - Method in class org.jfree.chart.DrawableLegendItem

Returns the largest Y coordinate of the framing rectangle of this legend item.

getMaxZ() - Method in class org.jfree.chart.ui.ColorPalette

Returns the maximum Z value.

getMaxZValue() - Method in interface org.jfree.data.ContourDataset

Returns the largest Z data value.

getMaxZValue() - Method in class org.jfree.data.DefaultContourDataset

Returns the maximum z-value.

getMCDPs() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getMCDPs() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getMD5fromFile(File) - Static method in class org.AttributeHelper

Deprecated.

getMD5fromFile(String) - Static method in class org.AttributeHelper

Deprecated.

getMD5fromInputStream(InputStream) - Static method in class org.AttributeHelper

Deprecated.

getMD5fromInputStream(InputStream, ObjectRef) - Static method in class org.AttributeHelper

Deprecated.

getMean() - Method in class org.jfree.data.MeanAndStandardDeviation

Returns the mean.

getMean() - Method in class org.jfree.data.statistics.BoxAndWhiskerItem

Returns the mean.

getMeanMCDPs() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getMeanMCDPs() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getMeanTimePoints() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getMeanTimePoints() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getMeanTimeUnits() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getMeanTimeUnits() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getMeanValue(int, int) - Method in interface org.jfree.data.statistics.BoxAndWhiskerCategoryDataset

Returns the mean value for an item.

getMeanValue(int, int) - Method in interface org.jfree.data.statistics.BoxAndWhiskerXYDataset

Returns the mean for the specified series and item.

getMeanValue(int, int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the mean value for an item.

getMeanValue(int, int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerXYDataset

Returns the mean for the specified series and item.

getMeanValue(int, int) - Method in class org.jfree.data.statistics.DefaultStatisticalCategoryDataset

Returns the mean value for an item.

getMeanValue(int, int) - Method in interface org.jfree.data.statistics.StatisticalCategoryDataset

Returns the mean value for an item.

getMeanValue(Comparable, Comparable) - Method in interface org.jfree.data.statistics.BoxAndWhiskerCategoryDataset

Returns the average value for an item.

getMeanValue(Comparable, Comparable) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the mean value for an item.

getMeanValue(Comparable, Comparable) - Method in class org.jfree.data.statistics.DefaultStatisticalCategoryDataset

Returns the mean value for an item.

getMeanValue(Comparable, Comparable) - Method in interface org.jfree.data.statistics.StatisticalCategoryDataset

Returns the mean value for an item.

getMeanValues() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getMeanValues() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getMeasurement() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint

getMeasurementtool() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample

getMeasurementtool() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface

getMeasurementUnit() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.SampleEntry

getMeasurementValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ReplicateDouble

getMeasurementValues() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.SampleEntry

getMeasurementValues(TableData, ArrayList<DataColumnHeader>, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentData

getMeasurementValuesSum() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

getMeasurementValuesSum() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface

getMeasurementValuesSum(ExperimentInterface) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

Deprecated.

getMedian() - Method in class org.jfree.data.statistics.BoxAndWhiskerItem

Returns the median.

getMedianValue(int, int) - Method in interface org.jfree.data.statistics.BoxAndWhiskerCategoryDataset

Returns the median value for an item.

getMedianValue(int, int) - Method in interface org.jfree.data.statistics.BoxAndWhiskerXYDataset

Returns the median-value for the specified series and item.

getMedianValue(int, int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the median value for an item.

getMedianValue(int, int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerXYDataset

Returns the median-value for the specified series and item.

getMedianValue(Comparable, Comparable) - Method in interface org.jfree.data.statistics.BoxAndWhiskerCategoryDataset

Returns the median value for an item.

getMedianValue(Comparable, Comparable) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the median value for an item.

getMember(int) - Method in class org.graffiti.options.OptionGroup

Returns the member at the specified index.

getMemberCount() - Method in class org.graffiti.options.OptionGroup

Returns the number of members.

getMemberIndex(Object) - Method in class org.graffiti.options.OptionGroup

Returns the index of the specified member.

getMembers() - Method in class org.graffiti.options.OptionGroup

Returns an enumeration of all members in this option group.

getMemoryInfoLabel(boolean) - Static method in class org.graffiti.editor.GravistoService

getMemoryMB() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.threading.SystemAnalysis

The option -Xmx5g will not result in a result of 5 GB.

getMenu() - Method in class scenario.Scenario

getMenuCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.ShortestPathSelectionAlgorithm

getMenuCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.WeightedShortestPathSelectionAlgorithm

getMenuCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate.RotateAlgorithm

getMenuCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph.ApplyGraphLayout

getMenuCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache.PatternSpringembedder

getMenuCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ClusterGraphLayout

getMenuCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.CreateClusterGraphAlgorithm

getMenuCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ShowClusterGraphAlgorithm

getMenuCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder

getMenuCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder3d

getMenuCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ChangeEdgeStyle

getMenuCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.EnrichHiddenLabelsAlgorithm

getMenuCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.RemoveHiddenLabelsAlgorithm

getMenuCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.RemoveParenthesisLabels

getMenuCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.ReplaceLabelAlgorithm

getMenuCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.RestoreLabelAlgorithm

getMenuCategory() - Method in class org.graffiti.plugin.algorithm.AbstractAlgorithm

For backwards compatibility the standard implementation will return the Category

getMenuCategory() - Method in interface org.graffiti.plugin.algorithm.Algorithm

Returns a path to a menu category.

getMenuCategory() - Method in class org.vanted.plugins.layout.multilevelframework.ForceDirectedLayoutWrapper

getMenuCategory() - Method in class org.vanted.plugins.layout.multilevelframework.MultilevelFrameworkLayout

getMenuCategory() - Method in class org.vanted.plugins.layout.stressminimization.BackgroundExecutionAlgorithm

getMenuItems() - Method in interface org.graffiti.plugin.extension.Extension

Override this method in order to provide menu items, that are added to the main menu bar.

getMercuryPaint() - Method in class org.jfree.chart.plot.ThermometerPlot

Returns the default mercury paint.

getMergedNodes() - Method in interface org.vanted.plugins.layout.multilevelframework.CoarsenedGraph

getMergers() - Static method in class org.vanted.plugins.layout.multilevelframework.MultilevelFrameworkLayout

getMessage() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLConstraint

getMessage() - Method in exception org.graffiti.plugin.algorithm.PreconditionException

getMetaCropListItem() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkTreeNode

getMetaCropListItems() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.WebDirectoryFileListAccess

getMetaID(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.KineticLawHelper

getMetaID(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter

getMetaID(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getMetaID(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper

getMetaIDModifier(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getMetaIDProduct(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getMetaIDReactant(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getMeterAngle() - Method in class org.jfree.chart.plot.MeterPlot

Returns the meter angle.

getMethodDescriptors() - Method in class net.iharder.dnd.FileDropBeanBeanInfo

Gets the bean's MethodDescriptors.

getMiddleMillisecond() - Method in class org.jfree.data.time.FixedMillisecond

Returns the millisecond closest to the middle of the time period.

getMiddleMillisecond() - Method in class org.jfree.data.time.RegularTimePeriod

Returns the millisecond closest to the middle of the time period, evaluated in the default time zone.

getMiddleMillisecond(Calendar) - Method in class org.jfree.data.time.FixedMillisecond

Returns the millisecond closest to the middle of the time period.

getMiddleMillisecond(Calendar) - Method in class org.jfree.data.time.RegularTimePeriod

Returns the millisecond closest to the middle of the time period, evaluated using the supplied calendar (which incorporates a timezone).

getMiddleMillisecond(TimeZone) - Method in class org.jfree.data.time.RegularTimePeriod

Returns the millisecond closest to the middle of the time period, evaluated within a specific time zone.

getMillisecond() - Method in class org.jfree.chart.axis.SegmentedTimeline.Segment

Returns the millisecond used to reference this segment (always between the segmentStart and segmentEnd).

getMillisecond() - Method in class org.jfree.data.time.Millisecond

Returns the millisecond.

getMin() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverage

getMin() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverageInterface

getMin() - Method in class org.graffiti.plugin.parameter.DoubleParameter

Returns the min defined value of this Double parameter.

getMin() - Method in class org.graffiti.plugin.parameter.FloatParameter

Returns the min defined value of this Float parameter.

getMin() - Method in class org.graffiti.plugin.parameter.IntegerParameter

Returns the minimum of the interval.

getMin() - Method in interface org.graffiti.plugin.parameter.LimitableParameter

Returns the minimum value for this LimitableParameter.

getMin() - Method in class org.vanted.plugins.layout.stressminimization.parameters.SliderOptions

getMinAddIncEdges(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.PatternAttributeUtils

Returns the minimal value for the additional incoming edges.

getMinAddOutEdges(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.PatternAttributeUtils

Returns the minimal value for the additional outgoing edges.

getMinDiff() - Method in class qmwi.kseg.som.CSV_SOM_dataEntry

getMinDiff() - Method in interface qmwi.kseg.som.SOMdataEntry

getMinDistance() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.DistanceInfo

getMinDistance() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.WeightedDistanceInfo

getMinEndIndex() - Method in class org.jfree.data.time.TimePeriodValues

Returns the index of the time period with the minimum end milliseconds.

getMinIcon() - Method in class org.jfree.chart.renderer.MinMaxCategoryRenderer

Gets the icon used to indicate the minimum value.

getMinimalCompatibility() - Static method in class org.vanted.BuildInfo

Gets the minimal Vanted compatibility, as specified in the build file.

getMinimum() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.SampleEntry

getMinimum(ArrayList<ReplicateDouble>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentData

getMinimumArcAngleToDraw() - Method in class org.jfree.chart.plot.PiePlot

Returns the minimum arc angle that will be drawn.

getMinimumAxisValue() - Method in class org.jfree.chart.axis.ValueAxis

Deprecated.

Use getLowerBound().

getMinimumBarLength() - Method in class org.jfree.chart.renderer.BarRenderer

Returns the minimum bar length (in Java2D units).

getMinimumCriticalValue() - Method in class org.jfree.data.DefaultMeterDataset

Deprecated.

Returns the minimum critical value.

getMinimumCriticalValue() - Method in interface org.jfree.data.MeterDataset

Deprecated.

Returns the lower value in the critical range.

getMinimumDate() - Method in class org.jfree.chart.axis.DateAxis

Returns the earliest date visible on the axis.

getMinimumDomainValue() - Method in class org.jfree.chart.demo.SampleXYDataset2

Returns the minimum domain value.

getMinimumDomainValue() - Method in class org.jfree.data.CategoryTableXYDataset

getMinimumDomainValue() - Method in class org.jfree.data.DefaultTableXYDataset

getMinimumDomainValue() - Method in interface org.jfree.data.DomainInfo

Returns the minimum value in the dataset (or null if all the values in the domain are null).

getMinimumDomainValue() - Method in class org.jfree.data.time.DynamicTimeSeriesCollection

Returns the minimum value in the dataset (or null if all the values in the domain are null).

getMinimumDomainValue() - Method in class org.jfree.data.time.TimePeriodValuesCollection

Returns the minimum value in the dataset (or null if all the values in the domain are null).

getMinimumDomainValue() - Method in class org.jfree.data.time.TimeSeriesCollection

Returns the minimum value in the dataset (or null if all the values in the domain are null).

getMinimumDomainValue() - Method in class org.jfree.data.time.TimeTableXYDataset

Returns the minimum value in the dataset (or null if all the values in the domain are null).

getMinimumDomainValue() - Method in class org.jfree.data.XYSeriesCollection

Returns the minimum value of the dataset on the domain.

getMinimumDomainValue(Dataset) - Static method in class org.jfree.data.DatasetUtilities

Returns the minimum domain value for the specified dataset.

getMinimumDrawHeight() - Method in class org.jfree.chart.ChartPanel

Returns the minimum drawing height for charts.

getMinimumDrawWidth() - Method in class org.jfree.chart.ChartPanel

Returns the minimum drawing width for charts.

getMinimumNormalValue() - Method in class org.jfree.data.DefaultMeterDataset

Deprecated.

Returns the minimum normal value.

getMinimumNormalValue() - Method in interface org.jfree.data.MeterDataset

Deprecated.

Returns the lower value in the normal range.

getMinimumRangeValue() - Method in class org.BioStatisticalCategoryDataset

getMinimumRangeValue() - Method in class org.jfree.chart.demo.SampleXYDataset2

Returns the minimum range value.

getMinimumRangeValue() - Method in class org.jfree.data.JDBCXYDataset

Returns the minimum data value in the dataset's range.

getMinimumRangeValue() - Method in interface org.jfree.data.RangeInfo

Returns the minimum value in the dataset's range (or null if all the values in the range are null).

getMinimumRangeValue() - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the minimum value in the dataset's range (or null if all the values in the range are null).

getMinimumRangeValue() - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerXYDataset

Returns the minimum value in the dataset's range (or null if all the values in the range are null).

getMinimumRangeValue() - Method in class org.jfree.data.statistics.DefaultStatisticalCategoryDataset

Returns the minimum value in the dataset's range (or null if all the values in the range are null).

getMinimumRangeValue() - Method in class org.jfree.data.time.DynamicTimeSeriesCollection

Returns the minimum range value.

getMinimumRangeValue(Dataset) - Static method in class org.jfree.data.DatasetUtilities

Returns the minimum range value for the specified dataset.

getMinimumSize() - Method in class org.vanted.scaling.resources.ImmutableCheckBox

getMinimumStackedRangeValue(CategoryDataset) - Static method in class org.jfree.data.DatasetUtilities

Returns the minimum value in the dataset range, assuming that values in each category are "stacked".

getMinimumValue() - Method in class org.jfree.chart.ui.ColorBarPropertyEditPanel

Returns the current setting of the minimum value in the axis range.

getMinimumValue() - Method in class org.jfree.data.DefaultMeterDataset

Deprecated.

Returns the minimum value.

getMinimumValue() - Method in interface org.jfree.data.MeterDataset

Deprecated.

Returns the lower value in the overall range.

getMinimumVerticalDataValue() - Method in class org.jfree.chart.plot.ThermometerPlot

Returns the minimum value in either the domain or the range, whichever is displayed against the vertical axis for the particular type of plot implementing this interface.

getMinimumWarningValue() - Method in class org.jfree.data.DefaultMeterDataset

Deprecated.

Returns the minimum warning value.

getMinimumWarningValue() - Method in interface org.jfree.data.MeterDataset

Deprecated.

Returns the lower value in the warning range.

getMinimumXY(Collection<Node>, double, double, double, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

getMinimumXY(Collection<Node>, double, double, double, boolean, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

getMinMiddleIndex() - Method in class org.jfree.data.time.TimePeriodValues

Returns the index of the time period with the minimum middle milliseconds.

getMinOutlier() - Method in class org.jfree.data.statistics.BoxAndWhiskerItem

Returns the minimum outlier.

getMinOutlier(int, int) - Method in interface org.jfree.data.statistics.BoxAndWhiskerCategoryDataset

Returns the minimum outlier (non-farout) for an item.

getMinOutlier(int, int) - Method in interface org.jfree.data.statistics.BoxAndWhiskerXYDataset

Returns the minimum value which is not a farout.

getMinOutlier(int, int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the minimum outlier (non farout) value for an item.

getMinOutlier(int, int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerXYDataset

Returns the minimum value which is not a farout.

getMinOutlier(Comparable, Comparable) - Method in interface org.jfree.data.statistics.BoxAndWhiskerCategoryDataset

Returns the minimum outlier (non-farout) for an item.

getMinOutlier(Comparable, Comparable) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the minimum outlier (non farout) value for an item.

getMinRegularValue() - Method in class org.jfree.data.statistics.BoxAndWhiskerItem

Returns the minimum regular value.

getMinRegularValue(int, int) - Method in interface org.jfree.data.statistics.BoxAndWhiskerCategoryDataset

Returns the minimum regular (non-outlier) value for an item.

getMinRegularValue(int, int) - Method in interface org.jfree.data.statistics.BoxAndWhiskerXYDataset

Returns the min-value for the specified series and item.

getMinRegularValue(int, int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the minimum regular (non outlier) value for an item.

getMinRegularValue(int, int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerXYDataset

Returns the min-value for the specified series and item.

getMinRegularValue(Comparable, Comparable) - Method in interface org.jfree.data.statistics.BoxAndWhiskerCategoryDataset

Returns the minimum regular (non-outlier) value for an item.

getMinRegularValue(Comparable, Comparable) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the minimum regular (non outlier) value for an item.

getMinStartIndex() - Method in class org.jfree.data.time.TimePeriodValues

Returns the index of the time period with the minimum start milliseconds.

getMinUsefullValue() - Method in class org.vanted.plugins.layout.stressminimization.parameters.LandmarkParameter

Returns the minimum useful value for the algorithm.

getMinute() - Method in class org.jfree.data.time.Minute

Returns the minute.

getMinute() - Method in class org.jfree.data.time.Second

Returns the minute.

getMinValue() - Method in class org.jfree.data.WaferMapDataset

Returns the minimum value stored in the dataset.

getMinZ() - Method in class org.jfree.chart.ui.ColorPalette

Returns the minimum Z value.

getMinZValue() - Method in interface org.jfree.data.ContourDataset

Returns the smallest Z data value.

getMinZValue() - Method in class org.jfree.data.DefaultContourDataset

Returns the minimum z-value.

getMinZValue(double, double, double, double) - Method in class org.jfree.data.DefaultContourDataset

Returns the minimum z-value.

getMissingPaint() - Method in class org.jfree.chart.plot.ContourPlot

Returns the missingPaint.

getMode(double) - Static method in enum org.graffiti.plugins.views.defaults.GradientFillAttributeEditor.NodeGradientModes

getMode(double) - Static method in enum org.graffiti.plugins.views.defaults.ThicknessAttributeEditor.ArrowHeadModes

getMode(String) - Method in class org.graffiti.managers.DefaultModeManager

getMode(String) - Method in interface org.graffiti.managers.ModeManager

Returns the specified mode from the list of modes.

getMode(String) - Static method in enum org.graffiti.plugins.views.defaults.DockingAttributeEditor.DockingModes

getModelSBMLById(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.RestApiBiomodels

Retrieves the SBML form of a model (in a string) given its identifier.

getModes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartAttributePlugin

getModes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartAttributePlugin

getModes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttributePlugin

getModes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundImageAttributePlugin

getModes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_color.LabelColorAttributePlugin

getModes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings.LabelFontAttributePlugin

getModes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style.LabelStyleAttributePlugin

getModes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttributePlugin

getModes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggAttributePlugin

getModes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment.LabelAlignmentAttributePlugin

getModes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttributePlugin

getModes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttributePlugin

getModes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.DBEplugin

getModes() - Method in interface org.graffiti.plugin.EditorPlugin

Returns the array of org.graffiti.plugin.mode.Modes the plugin contains.

getModes() - Method in class org.graffiti.plugin.EditorPluginAdapter

Returns the array of org.graffiti.plugin.mode.Modes the plugin contains.

getModifier(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the modifier edges

getModifierClones() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getMolecule(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathService

getMonth() - Method in class org.jfree.data.time.Day

Returns the month.

getMonth() - Method in class org.jfree.data.time.Hour

Returns the month in which this hour falls.

getMonth() - Method in class org.jfree.data.time.Month

Returns the month.

getMovingAverage(Number[], Number[], int) - Static method in class org.jfree.data.statistics.Statistics

Returns a data set for a moving average on the data set passed in.

getMultipleInput(Object...) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.MyInputHelper

getMultiSplit(ArrayList<JComponent>) - Static method in class info.clearthought.layout.TableLayout

getMultiSplit(ArrayList<JComponent>, double, int, int, int, int) - Static method in class info.clearthought.layout.TableLayout

getMultiSplitVertical(Collection<?>) - Static method in class info.clearthought.layout.TableLayout

getMultiSplitVertical(Collection<?>, double, int) - Static method in class info.clearthought.layout.TableLayout

getMultiSplitVertical(Collection<?>, int) - Static method in class info.clearthought.layout.TableLayout

getMultiSplitVerticalNonPrefHeight(Collection<?>, double) - Static method in class info.clearthought.layout.TableLayout

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.Addon

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.circle_search.CircleSearchAndLayoutAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping.DataMapping

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.ColorizeAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.DavidTestAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.GrubbsTestAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.ShowStatisticsTab

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.BarabasiAlbertGraphGenerator

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.ErdosRenyiGraphGenerator

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.WattsStrogatzGraphGenerator

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.HammingDistanceAlgorithm

Returns the name of the algorithm.

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.inverse_graph.InverseGraphPluginAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.lines_as_substances.LinesToSubstancesAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.NaivePatternFinderAlgorithm

Returns the name of the algorithm.

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.ExchangeNodePositionsAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.RatioViewAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.SubstanceRatioCalculationAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.AllPathsSelectionAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.ShortestPathSelectionAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.WeightedShortestPathSelectionAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.MultiDataView

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOManalysis

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMclusterAnalysis

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMclusterAnalysisDoCluster

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMprintDataset

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.BriteEntry

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.BriteHierarchy

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.commands.TranspathPathwayLoader

getName() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartComponent

getName() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.GraffitiCharts

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.ImageAssignmentCommand

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.AddDiagramLegendAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.ColorScaleLegendAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.CreateDistanceMatrixAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.ExtractMappingDataAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.RecolorEdgesAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.RemoveMappingDataAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.SetNumericAttributeFromDataAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.alt_id_statistics.AlternativeIDannotationStatistics

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.ApplyAlternativeIdentifiersTo

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.CombineMappingData

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.CreateFuncatGraphAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.ClusterHistogramFisherTest

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateDirectChildrenClustersHistogramAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateGOchildrenAverageDataDiagramAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateGOchildrenClustersHistogramAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateGOchildrenTtestHistogramAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.ProcessHierarchynodesDepOnLeafNodes

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.PruneTreeAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.CreateGOtreeAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.GOinformation

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.InterpreteGOtermsAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.InterpreteParentGOtermsAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.hierarchies.CreateKEGGOrthologyGraphAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.kegg_reaction.CreateKeggReactionNetworkAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.hierarchy.HierarchyAlgorithms

Deprecated.

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.hierarchy.HierarchyWizard

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.MergeNodes

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.ReplaceDiagramTitleFromAlternativeSubstanceNames

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectCompoundsAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectEdgesAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectEnzymesAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectGenesAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectMapNodesAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectMapTitleNodesAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectNodesWithExperimentalDataAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectReactionsAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.ShowOrHideImageAttributesAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.SplitNodeForSingleMappingData

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.UserMappingAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.CloseAllWindows

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.EvaluateKGML

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.RecreateView

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getName() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

getName() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getName() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.ColorizeSuperGraphAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.CreateOrgSpecificSuperGraphsAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.MergeWindowsAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.SelectWindowsAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.launch_gui.LaunchGui

getName() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter.QueryType

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.SimpleModel

Get the model name

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.TabBiomodels

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.TextFileColumnInformation

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.PutIntoSidePanel

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.RimasTab

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network.TabNetworkAlgorithms

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.LookAndFeelWrapper

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate.RotateAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color.SetBackgroundColorAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color.WindowSettings

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.startlayout.StartLayoutAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Entry

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Graphics

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Subtype

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartment

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLFunctionDefinition

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLParameter

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLUnitDefinition

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph.ApplyGraphLayout

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph.ShowLayoutTab

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.CircleLayouterAlgorithm

Returns the name of the algorithm.

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.CircleLayouterWithMinimumCrossingsAlgorithm

Returns the name of the algorithm.

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.CountCircularCrossingsAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.DotLayoutAlgorithm

Returns the name of the algorithm.

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.NullLayoutAlgorithm

Returns the name of the algorithm.

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.connected_components.ConnectedComponentLayout

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.copy_pattern_layout.CopyPatternLayoutAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_no_overlapp.NoOverlappLayoutAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_reduce_space.ExpandReduceLayouterAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fd_edge_routing.ForceDirectedEdgeLayout

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fish_eye.FishEyeLayout

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.graph_to_origin_mover.CenterLayouterAlgorithm

The external name of this algorithm.

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.graph_to_origin_mover.NoOverlappOfClustersAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement.GridPlacementAlgorithm

Returns the name of the algorithm.

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement.IterateGridPlacementLayout

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid.GridLayouterAlgorithm

Returns the name of the algorithm.

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.no_overlapp_as_tim.NoOverlappLayoutAlgorithmAS

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache.PatternSpringembedder

Sets Menu Command Title

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.AddRandomClusterInformationAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BendsLaunchGUI

Deprecated.

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BringToFrontOrBackAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BundleParallelEdges

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ClusterGraphLayout

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ClusterIndividualLayout

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ClusterOverviewNetworkLaunchGui

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.CreateClusterGraphAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.CreateHierarchyTree

Deprecated.

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.DuplicateEdge

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.IntroduceBendsAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.IntroduceParallelEdgeBends

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.IntroduceSelfEdgeBends

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.PajekClusterColor

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.RemoveBendsAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.RemoveParallelEdges

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ResetEdgeSourceOrTarget

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ResizeNodesDepDegreeAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SelectClusterAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SetClusterInfoAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SetClusterInfoFromLabelAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SetClusterInfoFromSubgraphAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SetClusterLaunchGui

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ShowClusterGraphAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SortIntoCluster

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder

Sets Menu Command Title

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder3d

Sets Menu Command Title

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.radial_tree.RadialTreeLayout

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.random.RandomLayouterAlgorithm

Returns the name of the algorithm.

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.ArrayLayout

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.GridLayoutAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.ResizeFromMappingCountLayoutAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.MultiTreeLayout

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.RTTreeLayout

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.springembedder_1.SpringEmbedderAlgorithm

Sets Menu Command Title

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.tree_simple.GraphTreeLayout

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.AddInterestingAttributes

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.CalculateAttribute

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.ComputeAttributesAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup.DeleteNodesAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup.NumberNodesAndEdgesAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.HideOrShowChildNodes

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.HierarchyAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.SelectLeafNodesAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ChangeEdgeStyle

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ChangeElementStyle

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ChangeNodeStyle

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ClearSelection

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.CopyDataTableAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ExpandSelectionAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ExportDataTableAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.FindReplaceDialog

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.InvertSelectionAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.RemoveSelectedNodesPreserveEdgesAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchAndSelecAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SetToolTipAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SetURLAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.ChangeLabelsAlgorithm

Deprecated.

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.EnrichHiddenLabelsAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.RemoveHiddenLabelsAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.RemoveParenthesisLabels

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.ReplaceLabelAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.RestoreLabelAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.LinkSelection

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayReferenceAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayReferenceAutoCreationAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.ppt_exporter.PPTAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.printer.PrintAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.AdditionalIdentifiersAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.ReplaceLabelFromAlternativeSubstanceNames

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.scripting.BeanShellDesktopAlgorithm

Returns the algorithms name.

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.GraphicExport

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PDFAlgorithm

Returns the display name (in menu area) for this plugin.

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PDFSVGAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithm

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SVGAlgorithm

Returns the display name (in menu area) for this plugin.

getName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.WebsiteGeneration

getName() - Method in class org.graffiti.attributes.AbstractAttribute

getName() - Method in class org.graffiti.editor.actions.AddAttributeAction

Returns the name of this action.

getName() - Method in class org.graffiti.editor.actions.ChangeAttributeValueAction

Returns the name represented by a String.

getName() - Method in class org.graffiti.editor.actions.CloneViewAction

Returns the name of this action.

getName() - Method in class org.graffiti.editor.actions.CloseViewAction

Returns the name of this action.

getName() - Method in class org.graffiti.editor.actions.DeleteAttributeAction

Returns the name of this action.

getName() - Method in class org.graffiti.graph.AdjListGraph

getName() - Method in interface org.graffiti.graph.Graph

getName() - Method in class org.graffiti.graphics.Port

Returns the name.

getName() - Method in class org.graffiti.graphics.PortAttribute

Returns the 'name'-value of the encapsulated port.

getName() - Method in interface org.graffiti.managers.pluginmgr.Dependency

Returns the name.

getName() - Method in class org.graffiti.managers.pluginmgr.PluginDependency

Returns the name.

getName() - Method in class org.graffiti.managers.pluginmgr.PluginDescription

Returns the name.

getName() - Method in class org.graffiti.managers.pluginmgr.RSSfeedDefinition

getName() - Method in class org.graffiti.options.AbstractOptionPane

Returns the internal name of the option pane.

getName() - Method in class org.graffiti.options.AddonsOptionsPane

getName() - Method in class org.graffiti.options.OptionGroup

Returns the name of the option group.

getName() - Method in interface org.graffiti.options.OptionPane

Returns the internal name of this option pane.

getName() - Method in class org.graffiti.options.ParameterOptionPane

getName() - Method in class org.graffiti.plugin.actions.GraffitiAction

Returns the abstract name of the action.

getName() - Method in class org.graffiti.plugin.actions.PopupAction

Returns the name of this action.

getName() - Method in interface org.graffiti.plugin.algorithm.Algorithm

Returns the name (ID) of the algorithm.

getName() - Method in interface org.graffiti.plugin.Displayable

Returns the name of this object.

getName() - Method in interface org.graffiti.plugin.extension.Extension

getName() - Method in class org.graffiti.plugin.inspector.InspectorTab

getName() - Method in class org.graffiti.plugin.parameter.AbstractSingleParameter

Returns the name of the parameter.

getName() - Method in class org.graffiti.plugin.parameter.EnumParameter

getName() - Method in class org.graffiti.selection.Selection

Returns the name of this selection.

getName() - Method in class org.jfree.data.Series

Returns the name of the series.

getName() - Method in class org.vanted.LookAndFeelNameAndClass

getName() - Method in class org.vanted.plugins.layout.adaptagrams.edgerouting.EdgeRoutingAlgorithm

getName() - Method in interface org.vanted.plugins.layout.multilevelframework.Describable

getName() - Method in class org.vanted.plugins.layout.multilevelframework.ForceDirectedLayoutWrapper

getName() - Method in class org.vanted.plugins.layout.multilevelframework.MultilevelFrameworkLayout

getName() - Method in class org.vanted.plugins.layout.multilevelframework.RandomMerger

getName() - Method in class org.vanted.plugins.layout.multilevelframework.RandomPlacer

getName() - Method in class org.vanted.plugins.layout.multilevelframework.SolarMerger

getName() - Method in class org.vanted.plugins.layout.multilevelframework.SolarPlacer

getName() - Method in class org.vanted.plugins.layout.stressminimization.BackgroundExecutionAlgorithm

getName() - Method in class org.vanted.plugins.layout.stressminimization.StressMinimizationLayout

getName() - Method in class scenario.Scenario

getName() - Method in class vanted_feature.SelectAlgorithm

Deprecated.

getName(boolean) - Method in class org.graffiti.graph.AdjListGraph

getName(boolean) - Method in interface org.graffiti.graph.Graph

getName(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getName(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter

getName(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getName(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper

Returns the name of the species

getNamespace() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.GOinformation

getNeedlePaint() - Method in class org.jfree.chart.plot.MeterPlot

Returns the paint for the needle.

getNegativeBarPaint() - Method in class org.jfree.chart.renderer.WaterfallBarRenderer

Returns the paint used to draw bars with negative values.

getNegativeItemLabelPosition() - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the item label position for negative values in ALL series.

getNegativeItemLabelPosition() - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the item label position for negative values in ALL series.

getNegativeItemLabelPosition() - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the item label position for negative values in ALL series.

getNegativeItemLabelPosition(int, int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the item label position for negative values.

getNegativeItemLabelPosition(int, int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the item label position for negative values.

getNegativeItemLabelPosition(int, int) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the item label position for negative values.

getNegativeItemLabelPositionFallback() - Method in class org.jfree.chart.renderer.BarRenderer

Returns the fallback position for negative item labels that don't fit within a bar.

getNegativePaint() - Method in class org.jfree.chart.renderer.XYDifferenceRenderer

Returns the paint used to highlight negative differences.

getNeighbors() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getNeighbors() - Method in class org.graffiti.graph.AbstractNode

Returns a collection containing all the neighbor nodes of the current Node.

getNeighbors() - Method in interface org.graffiti.graph.Node

Returns a collection containing all the neighbor nodes of the current Node.

getNeighborsIterator() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getNeighborsIterator() - Method in class org.graffiti.graph.AbstractNode

Returns an interator over the neighbor nodes of the current Node.

getNeighborsIterator() - Method in interface org.graffiti.graph.Node

Returns an interator over the neighbor nodes of the current Node.

getNetZ(double[], ObjectRef) - Method in class qmwi.kseg.som.Map

getNeuron() - Method in class qmwi.kseg.som.diagram.ClassesClass

Insert the method's description here.

getNeuron(int) - Method in class qmwi.kseg.som.diagram.ClassesAll

Insert the method's description here.

getNeuronNodeCount() - Method in class qmwi.kseg.som.Map

getNeuronWeight(int) - Method in class qmwi.kseg.som.diagram.ClassesClass

Insert the method's description here.

getNeuronWeights() - Method in class qmwi.kseg.som.diagram.ClassesClass

Insert the method's description here.

getNewAttribute(String, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KGMLhelper

getNewBlast() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getNewBlast() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getNewBlastEval() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getNewBlastEval() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getNewBlastScore() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getNewBlastScore() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getNewColor() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.FontChooser

getNewCondition(SubstanceInterface) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingTypeManager

getNewCondition(SubstanceInterface) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingTypeManagerInterface

getNewEdgeGraphicsAttribute(Color, Color, boolean) - Static method in class org.AttributeHelper

getNewestIndex() - Method in class org.jfree.data.time.DynamicTimeSeriesCollection

Returns the index of the newest data item.

getNewestTime() - Method in class org.jfree.data.time.DynamicTimeSeriesCollection

Returns the newest time.

getNewFont() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.FontChooser

getNewInputStream() - Method in class org.graffiti.managers.MyInputStreamCreator

getNewLineString() - Static method in class org.graffiti.util.GeneralUtils

DOCUMENT ME!

getNewMarked() - Method in class org.graffiti.selection.Selection

Returns the map holding graph elements that have been marked since the last selectionChanged event.

getNewMeasurement(SampleInterface) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingTypeManager

getNewMeasurement(SampleInterface) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingTypeManagerInterface

getNews(JTabbedPane) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.NewsHelper

getNewSample(ConditionInterface) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingTypeManager

getNewSample(ConditionInterface) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingTypeManagerInterface

getNewSampleAverage(SampleInterface) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingTypeManager

getNewSampleAverage(SampleInterface) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingTypeManagerInterface

getNewsComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.RSSFeedManager

getNewSubstance() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingTypeManager

getNewSubstance() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingTypeManagerInterface

getNewThreadSafeOptionsWithDefaultSettings() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.MyNonInteractiveSpringEmb

getNewUnmarked() - Method in class org.graffiti.selection.Selection

Returns the map holding graph elements that have been unmarked since the last selectionChanged event.

getNextID() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway

getNextLong() - Method in class org.graffiti.plugin.algorithm.ThreadSafeOptions

getNextLoopPreviousIndex(List<T>, int) - Method in class org.vanted.animation.loopers.Looper

Specifies what the previousIndex animation should be set to when it starts a new loop.

getNextLoopPreviousIndex(List<T>, int) - Method in class org.vanted.animation.loopers.SwingLooper

getNextNodeOfPattern() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.UllmannSubraphIsomAdjMatrixState

getNextNodeOfTarget() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.UllmannSubraphIsomAdjMatrixState

getNextOutlinePaint() - Method in class org.jfree.chart.plot.DefaultDrawingSupplier

Returns the next outline paint in the sequence.

getNextOutlinePaint() - Method in interface org.jfree.chart.plot.DrawingSupplier

Returns the next outline paint in a sequence maintained by the supplier.

getNextOutlineStroke() - Method in class org.jfree.chart.plot.DefaultDrawingSupplier

Returns the next outline stroke in the sequence.

getNextOutlineStroke() - Method in interface org.jfree.chart.plot.DrawingSupplier

Returns the next Stroke object in a sequence maintained by the supplier.

getNextPaint() - Method in class org.jfree.chart.plot.DefaultDrawingSupplier

Returns the next paint in the sequence.

getNextPaint() - Method in interface org.jfree.chart.plot.DrawingSupplier

Returns the next paint in a sequence maintained by the supplier.

getNextPosition() - Method in class org.PositionGridGenerator

getNextPositionVec2d() - Method in class org.PositionGridGenerator

getNextShape() - Method in class org.jfree.chart.plot.DefaultDrawingSupplier

Returns the next shape in the sequence.

getNextShape() - Method in interface org.jfree.chart.plot.DrawingSupplier

Returns the next Shape object in a sequence maintained by the supplier.

getNextStroke() - Method in class org.jfree.chart.plot.DefaultDrawingSupplier

Returns the next stroke in the sequence.

getNextStroke() - Method in interface org.jfree.chart.plot.DrawingSupplier

Returns the next Stroke object in a sequence maintained by the supplier.

getNextTimePeriod() - Method in class org.jfree.data.time.TimeSeries

Returns a time period that would be the next in sequence on the end of the time series.

getNiceEdgeOrNodeLabel(GraphElement, String) - Static method in class org.AttributeHelper

getNiceHeadline(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_SBase_Reader

Method transforms an presented headline into an intern headline

getNiceID() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.AttributePathNameSearchType

getNiceIdFromAttributeId(String) - Static method in class org.AttributeHelper

getNoDataMessage() - Method in class org.jfree.chart.plot.Plot

Returns the string that is displayed when the dataset is empty or null.

getNoDataMessageFont() - Method in class org.jfree.chart.plot.Plot

Returns the font used to display the 'no data' message.

getNoDataMessagePaint() - Method in class org.jfree.chart.plot.Plot

Returns the paint used to display the 'no data' message.

getNode() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.DistanceInfo

getNode() - Method in class org.graffiti.event.GraphEvent

Returns the node that is concerned with that event, e.g.: the node that has been / is to be removed.

getNode() - Method in class org.graffiti.event.NodeEvent

Returns the node that has been changed by this event.

getNode() - Method in class org.graffiti.plugin.parameter.NodeParameter

Returns the Node contained in this NodeParameter.

getNodeA() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.NodeCombination

getNodeAttribute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView

getNodeAttribute() - Method in interface org.graffiti.attributes.AttributeConsumer

Returns the attribute, which should be available in a node object.

getNodeAttribute() - Method in class org.graffiti.plugins.views.matrix.MatrixView

getNodeB() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.NodeCombination

getNodeComponentType(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

getNodeCursor() - Method in class org.graffiti.plugins.modes.defaults.MegaCreateTool

getNodeElementName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLContentHandler

getNodeElementName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLHandler

getNodeForJDOMElement(Element) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.JDOM2DOM

getNodeHelperList(Collection<Node>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getNodeIndex(Node, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.PatternAttributeUtils

Returns the node index for the given node and position.

getNodeLabel(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.metatool.MetatoolWriter

getNodeMovementThreshold() - Method in class org.vanted.plugins.layout.stressminimization.StressMinParamModel.TerminationCheckboxGroup

getNodeRectangle(Node) - Static method in class org.AttributeHelper

getNodeRectangleAWT(Node) - Static method in class org.AttributeHelper

getNodes() - Method in class org.graffiti.graph.AdjListGraph

getNodes() - Method in interface org.graffiti.graph.Graph

Returns a java.util.List containing all the nodes of the Graph.

getNodes() - Method in class org.graffiti.graph.OptAdjListGraph

Returns a list containing a copy of the node list of the graph.

getNodes() - Method in class org.graffiti.selection.Selection

Returns the list of selected nodes.

getNodesInsideThisNode(Node, Collection<Node>, HashMap<Node, Vector2d>, HashMap<Node, Vector2d>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

Find those nodes, which are located inside the "bigNode".

getNodesIterator() - Method in class org.graffiti.graph.AdjListGraph

Returns an iterator over the nodes of the graph.

getNodesIterator() - Method in interface org.graffiti.graph.Graph

Returns an iterator over the nodes of the Graph.

getNodesIterator() - Method in class org.graffiti.graph.OptAdjListGraph

Returns an iterator over the nodes of the graph.

getNodeStyle() - Method in class org.graffiti.plugins.ios.importers.gml.parser

getNoLoops() - Method in class org.vanted.animation.Animator

Gets the number of times the animator will perform a loop.

getNoLoops() - Method in class org.vanted.animation.AnimatorData

getNonRDFAnnotation(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.KineticLawHelper

getNonRDFAnnotation(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter

getNonRDFAnnotation(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getNonRDFAnnotation(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper

getNonRDFAnnotationModifier(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getNonRDFAnnotationProduct(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getNonRDFAnnotationReactant(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getNormalizedTime(double, double, List<T>, List<T>, T, T) - Method in class org.vanted.animation.loopers.ForwardLooper

getNormalizedTime(double, double, List<T>, List<T>, T, T) - Method in class org.vanted.animation.loopers.Looper

Calculates how far the time is from the next data point as a percentage.

getNormalPaint() - Method in class org.jfree.chart.plot.MeterPlot

Returns the paint for the 'normal' level.

getNormalRange() - Method in class org.jfree.chart.plot.MeterPlot

Returns the normal range for the dial.

getNormCursor() - Method in class org.graffiti.plugins.modes.defaults.MegaCreateTool

getNotes(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.KineticLawHelper

getNotes(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter

getNotes(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getNotes(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper

getNotesModifier(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getNotesProduct(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getNotesReactant(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getNotify() - Method in class org.jfree.chart.title.Title

Returns the flag that indicates whether or not the notification mechanism is enabled.

getNotify() - Method in class org.jfree.data.Series

Returns the flag that controls whether or not change events are sent to registered listeners.

getNumber() - Method in class org.jfree.chart.axis.NumberTick

Returns the number.

getNumber(int) - Method in class org.jfree.chart.demo.Performance

Repeatedly grabs a value from a Number instance.

getNumber(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.kgmlNumber

Parses a string to a kgml number.

getNumberFormat() - Method in class org.jfree.chart.labels.AbstractCategoryItemLabelGenerator

Returns the number formatter.

getNumberFormat() - Method in class org.jfree.chart.labels.StandardPieItemLabelGenerator

Returns the number formatter.

getNumberFormatOverride() - Method in class org.jfree.chart.axis.NumberAxis

Returns the number format override.

getNumberOfCircularEdgeCrossings(Collection<Node>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.services.AlgorithmServices

getNumberOfCPUs() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.threading.SystemAnalysis

getNumberOfCPUs(int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.threading.SystemAnalysis

getNumberOfCPUsMax(int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.threading.SystemAnalysis

getNumberOfDifferentTimePoints() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getNumberOfDifferentTimePoints() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getNumberOfDirectedEdges() - Method in class org.graffiti.graph.AbstractGraph

Returns the number of directed edges of the graph.

getNumberOfDirectedEdges() - Method in interface org.graffiti.graph.Graph

Returns the number of directed edges of the Graph.

getNumberOfDirectedEdges() - Method in class org.graffiti.graph.OptAdjListGraph

Returns the number of directed edges of the graph.

getNumberOfEdges() - Method in class org.graffiti.graph.AbstractGraph

Returns the number of edges of the graph.

getNumberOfEdges() - Method in class org.graffiti.graph.AdjListGraph

getNumberOfEdges() - Method in interface org.graffiti.graph.Graph

Returns the number of edges of the Graph.

getNumberOfEdges() - Method in class org.graffiti.graph.OptAdjListGraph

Returns the number of edges of the graph.

getNumberOfEdges() - Method in class org.graffiti.selection.Selection

getNumberOfEnzymeAnnotations() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.special.EnzymeStatisticInformation

getNumberOfEnzymeNodes(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeService

Get the number of nodes in this graph which could possible be valid EC numbers.

getNumberOfFiles() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader

getNumberOfFiles() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface

getNumberOfKeggEnzymes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.special.EnzymeStatisticInformation

getNumberOfLevels() - Method in class org.vanted.plugins.layout.multilevelframework.MultilevelGraph

Calculate the number of levels.

getNumberOfMeasurementValues() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

getNumberOfMeasurementValues() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface

getNumberOfMeasurementValues(ExperimentInterface) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

Deprecated.

getNumberOfNodes() - Method in class org.graffiti.graph.AbstractGraph

Returns the number of nodes in the graph.

getNumberOfNodes() - Method in class org.graffiti.graph.AdjListGraph

getNumberOfNodes() - Method in interface org.graffiti.graph.Graph

Returns the number of nodes in the Graph.

getNumberOfNodes() - Method in class org.graffiti.graph.OptAdjListGraph

Returns the number of nodes in the graph.

getNumberOfNodes() - Method in class org.graffiti.selection.Selection

getNumberOfOpenSessions() - Method in class org.graffiti.editor.MainFrame

getNumberOfPages() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.DefaultPageable

getNumberOfUndirectedEdges() - Method in class org.graffiti.graph.AbstractGraph

Returns the number of undirected edges in the graph.

getNumberOfUndirectedEdges() - Method in interface org.graffiti.graph.Graph

Returns the number of undirected edges in the Graph.

getNumberOfUndirectedEdges() - Method in class org.graffiti.graph.OptAdjListGraph

Returns the number of undirected edges in the graph.

getNumbersFromString(String) - Static method in class org.StringManipulationTools

getNumColumn() - Method in class info.clearthought.layout.TableLayout

Gets the number of columns in this layout.

getNumRow() - Method in class info.clearthought.layout.TableLayout

Gets the number of rows in this layout.

getNumTransactionsActive() - Method in class org.graffiti.event.ListenerManager

getObject() - Method in interface net.iharder.dnd.TransferableObject.Fetcher

Return the object being encapsulated in the TransferableObject.

getObject() - Method in class org.jfree.chart.demo.Performance2

Returns the object - caller has to use doubleValue() method.

getObject() - Method in class org.jfree.data.KeyedObject

Returns the object.

getObject() - Method in class org.ObjectRef

getObject(int) - Method in class org.jfree.data.KeyedObjects

Returns an object.

getObject(int) - Method in class qmwi.kseg.som.diagram.ClassesClass

Insert the method's description here.

getObject(int, int) - Method in class org.jfree.data.KeyedObjects2D

Returns the object for a given row and column.

getObject(int, int) - Method in class qmwi.kseg.som.diagram.ClassesAll

Insert the method's description here.

getObject(Comparable) - Method in class org.jfree.data.KeyedObjects

Returns the object for a given key.

getObject(Comparable, Comparable) - Method in class org.jfree.data.KeyedObjects2D

Returns the object for the given row and column keys.

getObjectAsPrimitive() - Method in class org.jfree.chart.demo.Performance2

Returns a double value generated from the Object - should be similar to previous method, but is not!

getObjectAsPrimitiveLoop(int) - Method in class org.jfree.chart.demo.Performance2

Cycles through accessing the object as a primitive.

getObjectFromString(String) - Static method in class org.ObjectAttributeService

getObjectIcon() - Method in class org.jfree.chart.renderer.MinMaxCategoryRenderer

Gets the icon used to indicate the values.

getObjectIndex() - Method in class qmwi.kseg.som.diagram.ClassesObjectInputVector

Insert the method's description here.

getObjectLoop(int) - Method in class org.jfree.chart.demo.Performance2

Cycles through accessing the object.

getOffset() - Method in class org.jfree.chart.axis.CyclicNumberAxis

The cycle bound is a multiple of the period, plus optionally a start offset.

getOldestIndex() - Method in class org.jfree.data.time.DynamicTimeSeriesCollection

Returns the index of the oldest data item.

getOldestTime() - Method in class org.jfree.data.time.DynamicTimeSeriesCollection

Returns the oldest time.

getOldValueZooming() - Static method in class org.vanted.scaling.vanted.GraphScaler

getOldVersionIfAppHasBeenUpdated(String) - Static method in class org.ReleaseInfo

getOLSRegression(double[][]) - Static method in class org.jfree.data.Regression

Returns the parameters 'a' and 'b' for an equation y = a + bx, fitted to the data using ordinary least squares regression.

getOLSRegression(XYDataset, int) - Static method in class org.jfree.data.Regression

Returns the parameters 'a' and 'b' for an equation y = a + bx, fitted to the data using ordinary least squares regression.

getOneAndTwoSidedFisherProbability(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.exact_fisher_test.ContTable

One and two sided Fisher test Calculate the probability of given arrangement or any more extreme arrangement.

getOneSided() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.exact_fisher_test.FisherProbability

getOneSidedD() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.exact_fisher_test.FisherProbability

getOpacity() - Method in class org.graffiti.graphics.ColorAttribute

Returns the 'opacity'-value of the encapsulated color.

getOpacity() - Method in class org.graffiti.graphics.GraphElementGraphicAttribute

Returns the current opacity of this graph element

getOpacity(GraphElement) - Static method in class org.AttributeHelper

Gets the opacity of a given graph element

getOpen() - Method in class org.jfree.data.OHLCDataItem

Returns the open value.

getOpen(int, int) - Method in class org.jfree.data.CombinedDataset

Returns the open-value (as a double primitive) for an item within a series.

getOpen(int, int) - Method in class org.jfree.data.DefaultHighLowDataset

Returns the open-value (as a double primitive) for an item within a series.

getOpen(int, int) - Method in interface org.jfree.data.HighLowDataset

Returns the open-value (as a double primitive) for an item within a series.

getOpen(int, int) - Method in class org.jfree.data.OHLCDataset

Returns the open-value (as a double primitive) for an item within a series.

getOpen(int, int) - Method in class org.jfree.data.SubSeriesDataset

Returns the open-value (as a double primitive) for an item within a series.

getOpenInputStream() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggPathwayEntry

getOpenTickLine() - Method in class org.jfree.chart.renderer.HighLow

Returns the line for open tick.

getOpenValue(int, int) - Method in class org.jfree.data.CombinedDataset

Returns the open-value for the specified series and item.

getOpenValue(int, int) - Method in class org.jfree.data.DefaultHighLowDataset

Returns the open-value for one item in a series.

getOpenValue(int, int) - Method in interface org.jfree.data.HighLowDataset

Returns the open-value for the specified series and item.

getOpenValue(int, int) - Method in class org.jfree.data.OHLCDataset

Returns the open value.

getOpenValue(int, int) - Method in class org.jfree.data.SubSeriesDataset

Returns the open-value for the specified series and item.

getOperatingSystem() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.threading.SystemAnalysis

getOpposite(AxisLocation) - Static method in class org.jfree.chart.axis.AxisLocation

Returns the location that is opposite to the supplied location.

getOppositeColor(Color) - Static method in class org.Colors

getOptionalQualityAnnotation() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ReplicateDouble

getOptionDialogComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKGraffitiView

getOptionDialogComponent() - Method in class org.graffiti.options.AbstractOptionPane

Returns the component that should be displayed for this option pane.

getOptionDialogComponent() - Method in class org.graffiti.options.AddonsOptionsPane

getOptionDialogComponent() - Method in interface org.graffiti.options.OptionPane

Returns the component, that should be displayed for this option pane.

getOptionDialogComponent() - Method in class org.graffiti.options.ParameterOptionPane

getOptionName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.XmlDataChartComponent

getOptionName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKGraffitiView

getOptionName() - Method in class org.graffiti.editor.options.LoadSaveOptionsPane

getOptionName() - Method in class org.graffiti.editor.options.ShortcutsOptionPane

getOptionName() - Method in class org.graffiti.editor.options.ToolBarOptionPane

getOptionName() - Method in class org.graffiti.options.AddonsOptionsPane

getOptionName() - Method in interface org.graffiti.options.OptionPane

getOptionName() - Method in class org.graffiti.options.OverviewOptionPane

getOptionName() - Method in class org.graffiti.options.ParameterOptionPane

getOptQualityTag(String, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionDatapoint

getOptX() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionDatapoint

getOptY() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionDatapoint

getOrganism() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionReader

getOrganismCodes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KoEntry

getOrganismCodesForGeneID(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KoEntry

getOrganismHierarchyInfo(String, String, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_organisms.OrganismInfo

getOrganismLetters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggPathwayEntry

getOrganismLettersFromMapId(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggPathwayEntry

getOrganismName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionDataset

getOrganisms() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggHelper

getOrientation() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the orientation of the plot.

getOrientation() - Method in class org.jfree.chart.plot.XYPlot

Returns the orientation of the plot.

getOrSetParam(boolean, int, Object) - Method in class org.graffiti.plugin.algorithm.AbstractThreadSaveLayoutAlgorithm

Sets or gets a Parameter Threadsafe for the Algorithm.

getOrthogonal() - Method in class org.Vector2d

getOSXApplication() - Static method in class org.vanted.osx.OSXSupport

Get an Apple eAWT Application object

getOtherInCount() - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.network.BroadCastService

getOtherTabs() - Method in class org.jfree.chart.ui.AxisPropertyEditPanel

Returns a reference to the tabbed pane.

getOutConstraints() - Method in class placement.Variable

getOutCount() - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.network.BroadCastService

getOutDegree() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getOutDegree() - Method in class org.graffiti.graph.AbstractNode

Returns the out-degree of the current Node.

getOutDegree() - Method in class org.graffiti.graph.AdjListNode

Returns the out-degree of the current Node.

getOutDegree() - Method in interface org.graffiti.graph.Node

Returns the out-degree of the current Node.

getOuterGap() - Method in class org.jfree.chart.StandardLegend

Returns the outer gap for the legend.

getOuterXml(Node) - Static method in class org.graffiti.plugin.XMLHelper

getOuterXmlPretty(Node) - Static method in class org.graffiti.plugin.XMLHelper

getOutgoing() - Method in class org.graffiti.graphics.PortsAttribute

Returns the 'outgoing'-value of the encapsulated ports.

getOutlierCoefficient() - Method in interface org.jfree.data.statistics.BoxAndWhiskerXYDataset

Returns the value used as the outlier coefficient.

getOutlierCoefficient() - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerXYDataset

Returns the value used as the outlier coefficient.

getOutliers() - Method in class org.jfree.data.statistics.BoxAndWhiskerItem

Returns a list of outliers.

getOutliers(int, int) - Method in interface org.jfree.data.statistics.BoxAndWhiskerCategoryDataset

Returns a list of outlier values for an item.

getOutliers(int, int) - Method in interface org.jfree.data.statistics.BoxAndWhiskerXYDataset

Returns an array of outliers for the specified series and item.

getOutliers(int, int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns a list of outlier values for an item.

getOutliers(int, int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerXYDataset

Returns an array of outliers for the specified series and item.

getOutliers(Comparable, Comparable) - Method in interface org.jfree.data.statistics.BoxAndWhiskerCategoryDataset

Returns a list of outlier values for an item.

getOutliers(Comparable, Comparable) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns a list of outlier values for an item.

getOutlineColor(Attributable) - Static method in class org.AttributeHelper

Returns the outline color of a given Atttibutable.

getOutlinePaint() - Method in class org.jfree.chart.LegendItem

Returns the outline paint.

getOutlinePaint() - Method in class org.jfree.chart.needle.MeterNeedle

Returns the outline paint.

getOutlinePaint() - Method in class org.jfree.chart.plot.Marker

Returns the outline paint.

getOutlinePaint() - Method in class org.jfree.chart.plot.Plot

Returns the color used to draw the outline of the plot area.

getOutlinePaint() - Method in class org.jfree.chart.StandardLegend

Returns the outline paint.

getOutlinePaint() - Method in class org.jfree.chart.ui.PlotPropertyEditPanel

Returns the current outline paint.

getOutlineShapes() - Method in class org.jfree.chart.StandardLegend

Returns the flag that indicates whether or not outlines are drawn around shapes.

getOutlineStroke() - Method in class org.jfree.chart.LegendItem

Returns the outline stroke.

getOutlineStroke() - Method in class org.jfree.chart.needle.MeterNeedle

Returns the outline stroke.

getOutlineStroke() - Method in class org.jfree.chart.plot.Marker

Returns the outline stroke.

getOutlineStroke() - Method in class org.jfree.chart.plot.Plot

Returns the stroke used to outline the plot area.

getOutlineStroke() - Method in class org.jfree.chart.StandardLegend

Returns the outline stroke.

getOutlineStroke() - Method in class org.jfree.chart.ui.PlotPropertyEditPanel

Returns the current outline stroke.

getOutNeighbors() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getOutNeighbors() - Method in class org.graffiti.graph.AbstractNode

Returns a collection containing all the neighbors of the current Node which are connected by an outgoing Edge.

getOutNeighbors() - Method in interface org.graffiti.graph.Node

Returns a collection containing all the neighbors of the current Node which are connected by an outgoing Edge.

getOutNeighborsIterator() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getOutNeighborsIterator() - Method in class org.graffiti.graph.AbstractNode

Returns an iterator containing all the neighbors of the current Node which are connected by an outgoing Edge.

getOutNeighborsIterator() - Method in interface org.graffiti.graph.Node

Returns an iterator containing all the neighbors of the current Node which are connected by an outgoing Edge.

getOutputSerializers() - Method in interface org.graffiti.plugin.GenericPlugin

Returns the output serializers the plugin provides.

getOutputSerializers() - Method in class org.graffiti.plugin.GenericPluginAdapter

Returns the output serializers the plugin provides.

getOwner() - Method in class org.jfree.chart.plot.PlotRenderingInfo

Returns the owner.

getPadding() - Method in class org.jfree.chart.plot.ThermometerPlot

Returns the padding for the thermometer.

getPageFormat(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.DefaultPageable

getPaint() - Method in class org.jfree.chart.annotations.TextAnnotation

Returns the paint for the annotation.

getPaint() - Method in class org.jfree.chart.LegendItem

Returns the paint.

getPaint() - Method in class org.jfree.chart.plot.FastScatterPlot

Returns the paint used to plot data points.

getPaint() - Method in class org.jfree.chart.plot.Marker

Returns the paint.

getPaint() - Method in class org.jfree.chart.renderer.HighLow

Returns the Paint object used to color the line.

getPaint() - Method in class org.jfree.chart.renderer.XYBoxAndWhiskerRenderer

Returns the paint used to fill boxes.

getPaint() - Method in class org.jfree.chart.title.TextTitle

Returns the paint used to display the title string.

getPaint(double) - Method in class org.jfree.chart.axis.ColorBar

Returns the Paint associated with a value.

getPaint(double) - Method in class org.jfree.chart.ui.ColorPalette

Returns Paint by mapping a given value to a either a linear or common log palette as controlled by the value logscale.

getPalette() - Method in class org.jfree.chart.ui.PaletteSample

Returns the current palette object being displayed.

getPaletteName() - Method in class org.jfree.chart.ui.ColorPalette

Returns the palette name.

getParam(int, Object) - Method in class org.graffiti.plugin.algorithm.ThreadSafeOptions

Get a parameter object

getParameterDialog(Selection) - Method in class org.graffiti.plugin.algorithm.AbstractEditorAlgorithm

getParameterDialog(Selection) - Method in interface org.graffiti.plugin.algorithm.EditorAlgorithm

Returns a custom ParameterDialog if the algorithm wants to provide one.

getParameterHeadlines(Graph) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLParameterHelper

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.circle_search.CircleSearchAndLayoutAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping.DataMapping

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.ColorizeAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.DavidTestAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.GrubbsTestAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.BarabasiAlbertGraphGenerator

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.ErdosRenyiGraphGenerator

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.WattsStrogatzGraphGenerator

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.HammingDistanceAlgorithm

Get parameters

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.RatioViewAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.SubstanceRatioCalculationAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.AllPathsSelectionAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.ShortestPathSelectionAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.WeightedShortestPathSelectionAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMclusterAnalysis

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMclusterAnalysisDoCluster

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMprintDataset

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.ImageAssignmentCommand

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.AddDiagramLegendAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.ColorScaleLegendAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.ExtractMappingDataAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.SetNumericAttributeFromDataAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.alt_id_statistics.AlternativeIDannotationStatistics

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.CombineMappingData

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.CreateFuncatGraphAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.ClusterHistogramFisherTest

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateGOchildrenClustersHistogramAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.InterpreteGOtermsAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.hierarchies.CreateKEGGOrthologyGraphAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.hierarchy.HierarchyWizard

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.MergeNodes

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectEdgesAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectNodesWithExperimentalDataAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.SplitNodeForSingleMappingData

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.ColorizeSuperGraphAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.CreateOrgSpecificSuperGraphsAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.MergeWindowsAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.SelectWindowsAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate.RotateAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph.ApplyGraphLayout

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.CircleLayouterAlgorithm

Returns the parameter object for the radius.

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.CircleLayouterWithMinimumCrossingsAlgorithm

Returns the parameter object for the radius and the minimize edge crossings parameter.

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.DotLayoutAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_no_overlapp.NoOverlappLayoutAlgorithm

Returns the parameter object for the radius.

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_reduce_space.ExpandReduceLayouterAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fd_edge_routing.ForceDirectedEdgeLayout

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fish_eye.FishEyeLayout

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement.GridPlacementAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid.GridLayouterAlgorithm

Parameters

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.no_overlapp_as_tim.NoOverlappLayoutAlgorithmAS

Returns the parameter object for the radius.

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache.PatternSpringembedder

DOCUMENT ME!

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.AddRandomClusterInformationAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BringToFrontOrBackAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BundleParallelEdges

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ClusterIndividualLayout

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.CreateClusterGraphAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.IntroduceBendsAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.IntroduceParallelEdgeBends

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.IntroduceSelfEdgeBends

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.PajekClusterColor

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.RemoveBendsAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.RemoveParallelEdges

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ResizeNodesDepDegreeAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SetClusterInfoAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SortIntoCluster

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder3d

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.radial_tree.RadialTreeLayout

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.random.RandomLayouterAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.ArrayLayout

Parameters

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.GridLayoutAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.ResizeFromMappingCountLayoutAlgorithm

Parameters

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.MultiTreeLayout

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.RTTreeLayout

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.springembedder_1.SpringEmbedderAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.tree_simple.GraphTreeLayout

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.AddInterestingAttributes

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.CalculateAttribute

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup.DeleteNodesAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup.NumberNodesAndEdgesAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.HideOrShowChildNodes

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.CopyDataTableAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ExpandSelectionAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ExportDataTableAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.FindReplaceDialog

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.InvertSelectionAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.RemoveSelectedNodesPreserveEdgesAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchAndSelecAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SetToolTipAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SetURLAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.EnrichHiddenLabelsAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.RemoveParenthesisLabels

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.ReplaceLabelAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayReferenceAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayReferenceAutoCreationAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.ppt_exporter.PPTAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.AdditionalIdentifiersAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.ReplaceLabelFromAlternativeSubstanceNames

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PDFAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PDFSVGAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithm

getParameters() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SVGAlgorithm

getParameters() - Method in class org.graffiti.plugin.algorithm.AbstractAlgorithm

getParameters() - Method in interface org.graffiti.plugin.algorithm.Algorithm

Returns a list of Parameter that are set for this algorithm.

getParameters() - Method in class org.vanted.plugins.layout.adaptagrams.edgerouting.EdgeRoutingAlgorithm

getParameters() - Method in class org.vanted.plugins.layout.multilevelframework.ForceDirectedLayoutWrapper

getParameters() - Method in interface org.vanted.plugins.layout.multilevelframework.Merger

Settings (parameters) for the Merger.

getParameters() - Method in class org.vanted.plugins.layout.multilevelframework.MultilevelFrameworkLayout

getParameters() - Method in interface org.vanted.plugins.layout.multilevelframework.Parameterizable

Gets a list of Parameters this class provides.

getParameters() - Method in interface org.vanted.plugins.layout.multilevelframework.Placer

Settings (parameters) for the Placer.

getParameters() - Method in class org.vanted.plugins.layout.multilevelframework.RandomMerger

getParameters() - Method in class org.vanted.plugins.layout.multilevelframework.RandomPlacer

See Placer

getParameters() - Method in class org.vanted.plugins.layout.multilevelframework.SolarMerger

getParameters() - Method in class org.vanted.plugins.layout.multilevelframework.SolarPlacer

getParameters() - Method in class org.vanted.plugins.layout.stressminimization.BackgroundExecutionAlgorithm

getParameters() - Method in class org.vanted.plugins.layout.stressminimization.StressMinimizationLayout

Deprecated.

getParameters(double, double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder

getParameterUI() - Method in class org.vanted.plugins.layout.stressminimization.BackgroundAlgorithm

getParameterUI() - Method in class org.vanted.plugins.layout.stressminimization.StressMinimizationLayout

getParent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.BriteEntry

getParent() - Method in class org.graffiti.attributes.AbstractAttribute

Returns the Attribute's parent, null if it is root.

getParent() - Method in interface org.graffiti.attributes.Attribute

Returns the Attribute's parent.

getParent() - Method in class org.jfree.chart.plot.Plot

Returns the parent plot (or null if this plot is not part of a combined plot).

getParent() - Method in interface org.jfree.data.CombinationDataset

Returns the parent Dataset of this combination.

getParent() - Method in class org.jfree.data.CombinedDataset

Returns the parent Dataset of this combination.

getParent() - Method in class org.jfree.data.SubSeriesDataset

Returns the parent Dataset of this combination.

getParentCondition() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample

getParentCondition() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface

getParentSample() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Measurement

getParentSample() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurement

getParentSample() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurementInterface

getParentSample() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverage

getParentSample() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverageInterface

getParentSubstance() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getParentSubstance() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getPartOf() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.GOinformation

getPassCount() - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer

Returns the number of passes through the data that the renderer requires in order to draw the chart.

getPassCount() - Method in class org.jfree.chart.renderer.StackedXYAreaRenderer

Returns the number of passes required by the renderer.

getPassCount() - Method in class org.jfree.chart.renderer.StackedXYAreaRenderer2

Returns the number of passes required by the renderer.

getPassCount() - Method in class org.jfree.chart.renderer.XYDifferenceRenderer

Returns 2, the number of passes required by the renderer.

getPassCount() - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the number of passes through the data required by the renderer.

getPassCount() - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer

Returns the number of passes through the data that the renderer requires in order to draw the chart.

getPassesRequired() - Method in class org.jfree.chart.plot.PiePlotState

Returns the number of passes required by the renderer.

getPath() - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.web.RestService

getPath() - Method in class org.graffiti.attributes.AbstractAttribute

Returns the Attribute's location.

getPath() - Method in interface org.graffiti.attributes.Attribute

Returns the Attribute's path.

getPath() - Method in class org.graffiti.event.AttributeEvent

Returns the path to the attribute that has been changed by this event.

getPathArray() - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.web.RestService

Gibt den gesamten Path zur�ck

getPathElements(Collection<Node>, Node, Collection<Node>, boolean, boolean, boolean, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.AllPathsSelectionAlgorithm

getPathId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.BriteEntry

getPathIterator(AffineTransform) - Method in class org.graffiti.plugins.views.defaults.AbstractArrowShape

DOCUMENT ME!

getPathIterator(AffineTransform) - Method in class org.graffiti.plugins.views.defaults.CircularNodeShape

DOCUMENT ME!

getPathIterator(AffineTransform) - Method in class org.graffiti.plugins.views.defaults.LineEdgeShape

DOCUMENT ME!

getPathIterator(AffineTransform) - Method in class org.graffiti.plugins.views.defaults.PolygonalNodeShape

getPathIterator(AffineTransform) - Method in class org.graffiti.plugins.views.defaults.RectangleNodeShape

getPathIterator(AffineTransform) - Method in class org.graffiti.plugins.views.defaults.RectangularNodeShape

getPathIterator(AffineTransform) - Method in class org.graffiti.plugins.views.defaults.StraightLineEdgeShape

DOCUMENT ME!

getPathIterator(AffineTransform, double) - Method in class org.graffiti.plugins.views.defaults.AbstractArrowShape

DOCUMENT ME!

getPathIterator(AffineTransform, double) - Method in class org.graffiti.plugins.views.defaults.CircularNodeShape

DOCUMENT ME!

getPathIterator(AffineTransform, double) - Method in class org.graffiti.plugins.views.defaults.LineEdgeShape

DOCUMENT ME!

getPathIterator(AffineTransform, double) - Method in class org.graffiti.plugins.views.defaults.PolygonalNodeShape

getPathIterator(AffineTransform, double) - Method in class org.graffiti.plugins.views.defaults.RectangleNodeShape

getPathIterator(AffineTransform, double) - Method in class org.graffiti.plugins.views.defaults.RectangularNodeShape

getPathIterator(AffineTransform, double) - Method in class org.graffiti.plugins.views.defaults.StraightLineEdgeShape

getPathway(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathService

getPathwayComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.MyPathWay

getPathwayComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.MyPathWay

getPathwayFromGraph(Graph, Collection<Gml2PathwayWarningInformation>, Collection<Gml2PathwayErrorInformation>, HashMap<Entry, Node>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway

getPathwayFromKGML(InputStream) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway

getPathwayFromKGML(Reader) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway

getPathwayFromKGML(Element) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway

getPathwayName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggPathwayEntry

getPathwayReference() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getPathwayReference(Attributable) - Static method in class org.AttributeHelper

getPathwayReferences(Attributable, boolean) - Static method in class org.AttributeHelper

getPathways() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathService

getPathWays() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.PathWayHandler

returns all PathWays found by getPathWaysfromModel

getPathWays() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.PathWayHandler

returns all PathWays found by getPathWaysfromModel

getPathWaysfromModel() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.PathWayHandler

use to write PathWays in an own data structure

getPathWaysfromModel() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.PathWayHandler

use to write PathWays in an own data structure

getPathwayURL() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggPathwayEntry

getPathwayURL(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggPathwayEntry

getPathwayURLstring() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggPathwayEntry

getPatternGraph() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.UllmannSubraphIsomAdjMatrixState

getPatternGraphs() - Method in class org.graffiti.editor.GravistoService

Returns a Vector which contains a list of pattern graphs.

getPatternIndex(Edge, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.PatternAttributeUtils

Returns the pattern index for the given edge and position.

getPatternIndex(Node, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.PatternAttributeUtils

Returns the pattern index for the given node and position.

getPatternName(Edge, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.PatternAttributeUtils

Returns the pattern name for the given edge and position.

getPatternName(Node, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.PatternAttributeUtils

Returns the pattern name for the given node and position.

getPatternNodeDistance() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.CircleLayouterAlgorithm

getPatternNodesPublic(ArrayList<NodeCacheEntry>, NodeCacheEntry) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder

getPatternNodesPublic(ArrayList<NodeCacheEntry3d>, NodeCacheEntry3d) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder3d

getPatternSessionList() - Method in class org.graffiti.editor.GravistoService

A List of the pattern sessions.

getPercent() - Method in class org.jfree.chart.event.ChartProgressEvent

Returns the percentage complete.

getPercentComplete() - Method in class org.jfree.data.gantt.Task

Returns the percentage complete for this task.

getPercentComplete(int, int) - Method in interface org.jfree.data.gantt.GanttCategoryDataset

Returns the percent complete for a given item.

getPercentComplete(int, int) - Method in class org.jfree.data.gantt.TaskSeriesCollection

Returns the percent complete for a given item.

getPercentComplete(int, int, int) - Method in interface org.jfree.data.gantt.GanttCategoryDataset

Returns the percentage complete value of a sub-interval for a given item.

getPercentComplete(int, int, int) - Method in class org.jfree.data.gantt.TaskSeriesCollection

Returns the percentage complete value of a sub-interval for a given item.

getPercentComplete(Comparable, Comparable) - Method in interface org.jfree.data.gantt.GanttCategoryDataset

Returns the percent complete for a given item.

getPercentComplete(Comparable, Comparable) - Method in class org.jfree.data.gantt.TaskSeriesCollection

Returns the percent complete for a given item.

getPercentComplete(Comparable, Comparable, int) - Method in interface org.jfree.data.gantt.GanttCategoryDataset

Returns the percentage complete value of a sub-interval for a given item.

getPercentComplete(Comparable, Comparable, int) - Method in class org.jfree.data.gantt.TaskSeriesCollection

Returns the percentage complete value of a sub-interval for a given item.

getPercentFormat() - Method in class org.jfree.chart.labels.StandardPieItemLabelGenerator

Returns the percent formatter.

getPeriod() - Method in class org.jfree.chart.axis.CyclicNumberAxis

The cycle bound is a multiple of the period, plus optionally a start offset.

getPeriod() - Method in class org.jfree.data.time.TimePeriodValue

Returns the time period.

getPeriod() - Method in class org.jfree.data.time.TimeSeriesDataItem

Returns the time period.

getPermissions(CodeSource) - Method in class org.graffiti.util.AllPermissionPolicy

getPersistent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper

getPieArea() - Method in class org.jfree.chart.plot.PiePlotState

Returns the pie area.

getPieCenterX() - Method in class org.jfree.chart.plot.PiePlotState

Returns the x-coordinate of the center of the pie chart.

getPieCenterY() - Method in class org.jfree.chart.plot.PiePlotState

Returns the y-coordinate (in Java2D space) of the center of the pie chart.

getPieChart() - Method in class org.jfree.chart.plot.MultiplePiePlot

Returns the pie chart that is used to draw the individual pie plots.

getPieHRadius() - Method in class org.jfree.chart.plot.PiePlotState

Returns the vertical pie radius.

getPieIndex() - Method in class org.jfree.chart.entity.PieSectionEntity

Returns the pie index.

getPieIndex() - Method in class org.jfree.chart.plot.PiePlot

Returns the pie index (this is used by the MultiplePiePlot class to track subplots).

getPieLabelRecord(int) - Method in class org.jfree.chart.plot.PieLabelDistributor

Returns a label record from the list.

getPieWRadius() - Method in class org.jfree.chart.plot.PiePlotState

Returns the horizontal pie radius.

getPlacers() - Static method in class org.vanted.plugins.layout.multilevelframework.MultilevelFrameworkLayout

getPlant() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DataColumnHeader

getPlant() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TimeAndPlantName

getPlantID() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MemSample

getPlantNodes(Document) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

getPlantOrLineIterator(TableData, int, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentData

getPlants(Document) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

Get a list of analyzed plants for the experiment.

getPlot() - Method in class org.jfree.chart.axis.Axis

Returns the plot that the axis is assigned to.

getPlot() - Method in class org.jfree.chart.event.PlotChangeEvent

Returns the plot that generated the event.

getPlot() - Method in class org.jfree.chart.JFreeChart

Returns the plot for the chart.

getPlot() - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer

Returns the plot that the renderer has been assigned to (where null indicates that the renderer is not currently assigned to a plot).

getPlot() - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer

Returns the plot that the renderer is assigned to.

getPlot() - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the plot that the renderer has been assigned to (where null indicates that the renderer is not currently assigned to a plot).

getPlot() - Method in class org.jfree.chart.renderer.DefaultPolarItemRenderer

Return the plot associated with this renderer.

getPlot() - Method in interface org.jfree.chart.renderer.PolarItemRenderer

Returns the plot that this renderer has been assigned to.

getPlot() - Method in class org.jfree.chart.renderer.WaferMapRenderer

Returns the plot.

getPlot() - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the plot that this renderer has been assigned to.

getPlotArea() - Method in class org.jfree.chart.ChartRenderingInfo

Returns the area in which the plot (and axes, if any) were drawn.

getPlotArea() - Method in class org.jfree.chart.plot.PlotRenderingInfo

Returns the plot area (in Java2D space).

getPlotArea() - Method in class org.jfree.chart.renderer.AreaXYRenderer

Deprecated.

Returns true if Area is being plotted by the renderer.

getPlotArea() - Method in class org.jfree.chart.renderer.XYAreaRenderer

Returns true if Area is being plotted by the renderer.

getPlotArea() - Method in class org.jfree.chart.renderer.XYAreaRenderer2

Returns true if Area is being plotted by the renderer.

getPlotArea() - Method in class org.jfree.chart.renderer.XYStepAreaRenderer

Returns true if Area is being plotted by the renderer.

getPlotDiscontinuous() - Method in class org.jfree.chart.renderer.StandardXYItemRenderer

Returns true if lines should be discontinuous.

getPlotImages() - Method in class org.jfree.chart.renderer.StandardXYItemRenderer

Returns true if images are being plotted by the renderer.

getPlotInfo() - Method in class org.jfree.chart.ChartRenderingInfo

Returns the rendering info for the chart's plot.

getPlotInsets() - Method in class org.jfree.chart.ui.PlotPropertyEditPanel

Returns the current plot insets.

getPlotLines() - Method in class org.jfree.chart.renderer.AreaXYRenderer

Deprecated.

Returns true if lines are being plotted by the renderer.

getPlotLines() - Method in class org.jfree.chart.renderer.StandardXYItemRenderer

Returns true if lines are being plotted by the renderer.

getPlotLines() - Method in class org.jfree.chart.renderer.XYAreaRenderer

Returns true if lines are being plotted by the renderer.

getPlotLines() - Method in class org.jfree.chart.renderer.XYAreaRenderer2

Returns true if lines are being plotted by the renderer.

getPlotPropertyEditPanel() - Method in class org.jfree.chart.ui.ChartPropertyEditPanel

Returns a reference to the plot property sub-panel.

getPlotShapes() - Method in class org.jfree.chart.renderer.AreaXYRenderer

Deprecated.

Returns true if shapes are being plotted by the renderer.

getPlotShapes() - Method in class org.jfree.chart.renderer.StandardXYItemRenderer

Returns true if shapes are being plotted by the renderer.

getPlotShapes() - Method in class org.jfree.chart.renderer.XYAreaRenderer

Returns true if shapes are being plotted by the renderer.

getPlotShapes() - Method in class org.jfree.chart.renderer.XYAreaRenderer2

Returns true if shapes are being plotted by the renderer.

getPlotShapes() - Method in class org.jfree.chart.renderer.XYDifferenceRenderer

Returns a flag that controls whether or not shapes are drawn for each data value.

getPlotShapes() - Method in class org.jfree.chart.renderer.XYStepAreaRenderer

Returns true if shapes are being plotted by the renderer.

getPlotType() - Method in class org.jfree.chart.plot.CategoryPlot

Returns a string describing the type of plot.

getPlotType() - Method in class org.jfree.chart.plot.CombinedDomainXYPlot

Returns a string describing the type of plot.

getPlotType() - Method in class org.jfree.chart.plot.CombinedRangeXYPlot

Returns a string describing the type of plot.

getPlotType() - Method in class org.jfree.chart.plot.CompassPlot

Returns a short string describing the type of plot.

getPlotType() - Method in class org.jfree.chart.plot.ContourPlot

Returns the plot type as a string.

getPlotType() - Method in class org.jfree.chart.plot.FastScatterPlot

Returns a short string describing the plot type.

getPlotType() - Method in class org.jfree.chart.plot.MeterPlot

Returns a short string describing the type of plot.

getPlotType() - Method in class org.jfree.chart.plot.MultiplePiePlot

Returns a short string describing the type of plot.

getPlotType() - Method in class org.jfree.chart.plot.PiePlot

Returns a short string describing the type of plot.

getPlotType() - Method in class org.jfree.chart.plot.PiePlot3D

Returns a short string describing the type of plot.

getPlotType() - Method in class org.jfree.chart.plot.Plot

Returns a short string describing the plot type.

getPlotType() - Method in class org.jfree.chart.plot.PolarPlot

Returns the plot type as a string.

getPlotType() - Method in class org.jfree.chart.plot.ThermometerPlot

Returns a short string describing the type of plot.

getPlotType() - Method in class org.jfree.chart.plot.WaferMapPlot

Returns the plot type as a string.

getPlotType() - Method in class org.jfree.chart.plot.XYPlot

Returns the plot type as a string.

getPlugin() - Method in class org.graffiti.managers.pluginmgr.DefaultPluginEntry

Returns the plugin.

getPlugin() - Method in interface org.graffiti.managers.pluginmgr.PluginEntry

Returns the plugin of this entry.

getPluginDependenciesIterator() - Method in class org.graffiti.managers.pluginmgr.PluginDescription

Returns an iterator over the plugin dependency list.

getPluginDescriptionTable(PluginEntry) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_dbe.PluginInfoHelper

getPluginEntries() - Method in class org.graffiti.managers.pluginmgr.DefaultPluginManager

Returns the corrent list of plugin entries.

getPluginEntries() - Method in interface org.graffiti.managers.pluginmgr.PluginManager

Returns the current list of plugin entries.

getPluginFeeds() - Method in class org.graffiti.managers.pluginmgr.DefaultPluginManager

getPluginFeeds() - Method in interface org.graffiti.managers.pluginmgr.PluginManager

getPluginInstance(String) - Method in class org.graffiti.managers.pluginmgr.DefaultPluginManager

Returns the plugin instance of the given plugin name.

getPluginInstance(String) - Method in interface org.graffiti.managers.pluginmgr.PluginManager

Returns the plugin instance of the given plugin name.

getPluginInstanceFromPluginDescription(String) - Method in class org.graffiti.editor.GravistoService

Returns a plugin instance, given by its classname.

getPluginLayoutAlgs() - Static method in class org.vanted.plugins.layout.multilevelframework.LayoutAlgorithmWrapper

Find layout algorithms supplied by plugins.

getPluginLocation() - Method in class org.graffiti.managers.pluginmgr.DefaultPluginEntry

Returns the plugin location.

getPluginLocation() - Method in interface org.graffiti.managers.pluginmgr.PluginEntry

Returns the location of the plugin.

getPluginManager() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.GravistoMainHelper

getPluginManager() - Method in class org.graffiti.editor.MainFrame

DOCUMENT ME!

getPluginManager() - Method in class org.graffiti.managers.pluginmgr.PluginManagerDialog

Returns the plugin manager of this dialog.

getPluginStatusText() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.helper.DBEgravistoHelper

getPluginStatusText() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.helper.PatternGraffitiHelper

getPluginUrl() - Method in class org.graffiti.managers.pluginmgr.DefaultPluginEntry

getPluginUrl() - Method in interface org.graffiti.managers.pluginmgr.PluginEntry

getPoint() - Method in class org.jfree.chart.renderer.Outlier

Returns the xy coordinates of the bounding box containing the outlier ellipse.

getPoint2D() - Method in class org.Vector2d

getPoint2D() - Method in class org.Vector2df

getPoint2D() - Method in class org.Vector3d

getPointIndexes(List<T>, int, int, int) - Method in class org.vanted.animation.loopers.Looper

getPointsUsed(List<T>, int, int, int) - Method in class org.vanted.animation.loopers.Looper

getPopupMenu() - Method in class org.jfree.chart.ChartPanel

Returns the popup menu.

getPort() - Method in class org.graffiti.graphics.PortAttribute

Returns the encapsulated port.

getPort(String, boolean) - Method in class org.graffiti.graphics.PortsAttribute

Look if there is a PortAttribute in this CollectionAttribute called name.

getPorts() - Method in class org.graffiti.graphics.NodeGraphicAttribute

Returns the 'ports'-value of the encapsulated node.

getPosiblePositions(boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundImagePositionAttributeEditor

getPosition() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getPosition() - Method in class org.graffiti.graphics.EdgeLabelAttribute

Returns the NodeLabelPositionAttribute specifying the position of the encapsulated label.

getPosition() - Method in class org.graffiti.graphics.NodeLabelAttribute

Returns the NodeLabelPositionAttribute specifying the position of the encapsulated label.

getPosition() - Method in class org.jfree.chart.title.Title

Returns the position of the title.

getPosition() - Method in class org.jfree.data.time.DynamicTimeSeriesCollection

Returns the x position type (START, MIDDLE or END).

getPosition() - Method in class org.jfree.data.time.TimePeriodValuesCollection

Deprecated.

Use getXPosition().

getPosition() - Method in class org.jfree.data.time.TimeSeriesCollection

Deprecated.

Use getXPosition().

getPosition(Node) - Static method in class org.AttributeHelper

Returns the position of a node

getPosition(Node, Vector2d) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache.MyTools

getPositionOfOnes(String) - Static method in class org.graffiti.util.GeneralUtils

DOCUMENT ME!

getPositions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation

getPositionsOfGraphElementsForThisSearchOption(Collection<GraphElement>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption

getPositionUnits() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation

getPositionVec2d(Node) - Static method in class org.AttributeHelper

Returns the position of a node

getPositionVec2df(Node) - Static method in class org.AttributeHelper

Returns the position of a node

getPositionVec3d(Node, boolean) - Static method in class org.AttributeHelper

If setDefault is true, values will be initilized, saved and returned as 0.

getPositionVec3d(Node, double, boolean) - Static method in class org.AttributeHelper

getPositionX(Node) - Static method in class org.AttributeHelper

For getting the x position of a node through attribute access,

getPositionY(Node) - Static method in class org.AttributeHelper

For geting the y position of a node through attribute access,

getPositionZ(Node, boolean) - Static method in class org.AttributeHelper

getPositionZ(Node, double, boolean) - Static method in class org.AttributeHelper

getPositiveBarPaint() - Method in class org.jfree.chart.renderer.WaterfallBarRenderer

Returns the paint used to draw bars with positive values.

getPositiveItemLabelPosition() - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the item label position for positive values in ALL series.

getPositiveItemLabelPosition() - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the item label position for positive values in ALL series.

getPositiveItemLabelPosition() - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the item label position for positive values in ALL series.

getPositiveItemLabelPosition(int, int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the item label position for positive values.

getPositiveItemLabelPosition(int, int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the item label position for positive values.

getPositiveItemLabelPosition(int, int) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the item label position for positive values.

getPositiveItemLabelPositionFallback() - Method in class org.jfree.chart.renderer.BarRenderer

Returns the fallback position for positive item labels that don't fit within a bar.

getPositivePaint() - Method in class org.jfree.chart.renderer.XYDifferenceRenderer

Returns the paint used to highlight positive differences.

getPossibleNodes() - Method in class org.graffiti.plugin.parameter.NodeParameter

getPossibleValues() - Method in class org.graffiti.plugin.parameter.ObjectListParameter

getPostBorderShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.DoubleEllipseShape

getPostBorderShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.MultiComplexShape

getPostBorderShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.MultiEllipseShape

getPostBorderShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.MultiNucleicAcidFeatureShape

getPostBorderShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.MultiRectangleShape

getPostBorderShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNCircleShape

getPostBorderShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNMultiStadiumShape

getPostBorderShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNProcessShape

getPostBorderShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SourceSinkShape

getPostBorderShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TransitionShape

getPostBorderShapes() - Method in interface org.graffiti.plugin.view.ProvidesAdditonalDrawingShapes

getPowerRegression(double[][]) - Static method in class org.jfree.data.Regression

Returns the parameters 'a' and 'b' for an equation y = ax^b, fitted to the data using a power regression equation.

getPowerRegression(XYDataset, int) - Static method in class org.jfree.data.Regression

Returns the parameters 'a' and 'b' for an equation y = ax^b, fitted to the data using a power regression equation.

getPreBorderShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.DoubleEllipseShape

getPreBorderShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.MultiComplexShape

getPreBorderShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.MultiEllipseShape

getPreBorderShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.MultiNucleicAcidFeatureShape

getPreBorderShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.MultiRectangleShape

getPreBorderShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNCircleShape

getPreBorderShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNDissociationShape

getPreBorderShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNMultiStadiumShape

getPreBorderShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNProcessShape

getPreBorderShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SourceSinkShape

getPreBorderShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TransitionShape

getPreBorderShapes() - Method in interface org.graffiti.plugin.view.ProvidesAdditonalDrawingShapes

getPreferenceCategoryForClass(Class<?>, String) - Static method in class org.graffiti.managers.PreferenceManager

This method should be used when getting Preferences for a specific category (folder) for a class/object.

getPreferenceForClass(Class<?>) - Static method in class org.graffiti.managers.PreferenceManager

This method should be used when getting Preferences for a specific class/object.

getPreferences() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.GravistoMainHelper

getPreferencesAlternativeName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartAttributeComponent

getPreferencesAlternativeName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKGraffitiView

getPreferencesAlternativeName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.RimasTab

getPreferencesAlternativeName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.TabMetaCrop

getPreferencesAlternativeName() - Method in interface org.graffiti.options.PreferencesInterface

return a custom preference category, that this class will reside in.

getPreferencesAlternativeName() - Method in class org.graffiti.plugins.attributecomponents.simplelabel.LabelComponent

getPreferencesAlternativeName() - Method in class org.graffiti.plugins.modes.defaults.MegaMoveTool

getPreferencesAlternativeName() - Method in class org.vanted.scaling.vanted.HighDPISupport

getPreferencesAlternativeName() - Method in class org.vanted.updater.ScanForUpdate

getPreferencesAlternativeName() - Method in class org.vanted.VantedPreferences

getPreferencingClasses() - Method in class org.graffiti.managers.PreferenceManager

getPreferredComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.ClusterHelperToolbarComponent

getPreferredComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.zoomfit.AlignNodesComponent

getPreferredComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.zoomfit.ZoomFitChangeComponent

getPreferredComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SelectNodesComponent

getPreferredComponent() - Method in class org.graffiti.plugin.gui.AbstractGraffitiComponent

DOCUMENT ME!

getPreferredComponent() - Method in class org.graffiti.plugin.gui.GraffitiButton

Returns the id of the component the button prefers to be inserted in.

getPreferredComponent() - Method in interface org.graffiti.plugin.gui.GraffitiComponent

Returns the id of the component this component should be placed in.

getPreferredComponent() - Method in class org.graffiti.plugin.gui.GraffitiMenu

getPreferredComponent() - Method in class org.graffiti.plugin.gui.GraffitiMenuItem

Returns the id of the component the menu item prefers to be inserted in.

getPreferredComponent() - Method in class org.graffiti.plugin.gui.GraffitiToggleButton

Returns the id of the component the button prefers to be inserted in.

getPreferredComponent() - Method in class org.graffiti.plugin.gui.GraffitiToolbar

Returns the id of the component the toolbar prefers to be inserted.

getPreferredComponent() - Method in class org.graffiti.plugins.inspectors.defaults.InspectorContainer

getPreferredHeight(Graphics2D, float) - Method in class org.jfree.chart.title.ImageTitle

Returns the preferred height of the title.

getPreferredHeight(Graphics2D, float) - Method in class org.jfree.chart.title.TextTitle

Returns the preferred height of the title.

getPreferredHeight(Graphics2D, float) - Method in class org.jfree.chart.title.Title

Returns the preferred height of the title.

getPreferredSize() - Method in class org.graffiti.editor.dialog.DefaultParameterDialog

getPreferredSize() - Method in class org.graffiti.plugins.attributecomponents.simplelabel.ViewLabel

getPreferredSize() - Method in class org.graffiti.plugins.inspectors.defaults.InspectorContainer

getPreferredSize() - Method in class org.jfree.chart.demo.DescriptionPanel

Returns the preferred size.

getPreferredSize() - Method in class org.jfree.chart.demo.JFreeChartDemo

Returns the preferred size for the frame.

getPreferredSize() - Method in class org.jfree.chart.ui.PaletteSample

Returns the preferred size of the component.

getPreferredSize() - Method in class org.vanted.scaling.resources.ImmutableCheckBox

getPreferredTabPosition() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.TabBiomodels

getPreferredTabPosition() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.TabKegg

getPreferredTabPosition() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.RimasTab

getPreferredTabPosition() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.TabMetaCrop

getPreferredTabPosition() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network.TabNetworkAlgorithms

getPreferredTabPosition() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics

getPreferredTabPosition() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPatternLayout

getPreferredTabPosition() - Method in class org.graffiti.plugin.inspector.InspectorTab

Returns the preferred tab position in its parent tab.

getPreferredTabPosition() - Method in class org.graffiti.plugins.inspectors.defaults.EdgeTab

getPreferredTabPosition() - Method in class org.graffiti.plugins.inspectors.defaults.GraphTab

getPreferredTabPosition() - Method in class org.graffiti.plugins.inspectors.defaults.NodeTab

getPreferredWidth() - Method in class org.jfree.chart.StandardLegend

Returns the preferred width of the legend bounding box if such width has been defined; otherwise returns NO_PREFERRED_WIDTH.

getPreferredWidth(Graphics2D, float) - Method in class org.jfree.chart.title.ImageTitle

Returns the preferred width of the title.

getPreferredWidth(Graphics2D, float) - Method in class org.jfree.chart.title.TextTitle

Returns the preferred width of the title.

getPreferredWidth(Graphics2D, float) - Method in class org.jfree.chart.title.Title

Returns the preferred width of the title.

getPrefix() - Method in class org.graffiti.plugin.io.resources.FileSystemHandler

getPrefix() - Method in class org.graffiti.plugin.io.resources.FTPhandler

getPrefix() - Method in class org.graffiti.plugin.io.resources.HTTPhandler

getPrefix() - Method in class org.graffiti.plugin.io.resources.HTTPShandler

getPrefix() - Method in class org.graffiti.plugin.io.resources.IOurl

getPrefix() - Method in interface org.graffiti.plugin.io.resources.ResourceIOHandler

getPreIdentifyer() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.LoadGraphFileAttributeAction

getPreIdentifyer() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.LoadURLattributeAction

getPreIdentifyer() - Method in interface org.graffiti.plugin.actions.URLattributeAction

getPresentationName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.KeggNavigationToolbarCommand

getPresentationName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.zoomfit.AlignNodesCommand

getPresentationName() - Method in class org.graffiti.plugin.algorithm.AbstractAlgorithm

getPresentationName() - Method in class org.graffiti.undo.AddEdgeEdit

Used to display the name for this edit.

getPresentationName() - Method in class org.graffiti.undo.AddNodeEdit

Used to display the name for this edit.

getPresentationName() - Method in class org.graffiti.undo.ChangeAttributesEdit

getPresentationName() - Method in class org.graffiti.undo.GraphElementsDeletionEdit

Used to display the name for this edit.

getPreviousRatio() - Static method in class org.vanted.scaling.scalers.component.WindowScaler

getPrimitive() - Method in class org.jfree.chart.demo.Performance2

Just use double value - should be fast.

getPrimitiveAsObject() - Method in class org.jfree.chart.demo.Performance2

Creates a Number object every time the primitive is accessed - should be really slow.

getPrimitiveAsObjectLoop(int) - Method in class org.jfree.chart.demo.Performance2

Cycles through accessing the primitive as an object.

getPrimitiveLoop(int) - Method in class org.jfree.chart.demo.Performance2

Cycles through accessing the primitive.

getPrintable(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.DefaultPageable

getPriorityFunction() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper

getProcessedLink(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.LinkProcessor

getProcessingResults() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.DataDragAndDropHandler

getProdId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.ReactionAndInfo

May return multiple IDs (e.g.

getProductClones() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getProductNames() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionEntry

getProducts() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Reaction

getProducts(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

The edges with the simple species references will be returned

getProgress() - Method in class org.vanted.plugins.layout.stressminimization.BackgroundAlgorithm

getProjectList() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TabDBE

getPropertyChangeListener() - Method in class org.vanted.plugins.layout.stressminimization.BackgroundAlgorithm

returns an array of PropertyChangeListener that were added to the BackgroundAlgorithm

getPropertyDescriptors() - Method in class net.iharder.dnd.FileDropBeanBeanInfo

Gets the bean's PropertyDescriptors.

getPtSizePct() - Method in class org.jfree.chart.plot.ContourPlot

Returns the ptSizePct.

getPvalueForGivenTable(int, int, int, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.exact_fisher_test.ContTable

getQ1() - Method in class org.jfree.data.statistics.BoxAndWhiskerItem

Returns the first quartile.

getQ1Value(int, int) - Method in interface org.jfree.data.statistics.BoxAndWhiskerCategoryDataset

Returns the q1median value for an item.

getQ1Value(int, int) - Method in interface org.jfree.data.statistics.BoxAndWhiskerXYDataset

Returns the Q1 median-value for the specified series and item.

getQ1Value(int, int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the first quartile value.

getQ1Value(int, int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerXYDataset

Returns the Q1 median-value for the specified series and item.

getQ1Value(Comparable, Comparable) - Method in interface org.jfree.data.statistics.BoxAndWhiskerCategoryDataset

Returns the q1median value for an item.

getQ1Value(Comparable, Comparable) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the first quartile value.

getQ3() - Method in class org.jfree.data.statistics.BoxAndWhiskerItem

Returns the third quartile.

getQ3Value(int, int) - Method in interface org.jfree.data.statistics.BoxAndWhiskerCategoryDataset

Returns the q3median value for an item.

getQ3Value(int, int) - Method in interface org.jfree.data.statistics.BoxAndWhiskerXYDataset

Returns the Q3 median-value for the specified series and item.

getQ3Value(int, int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the third quartile value.

getQ3Value(int, int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerXYDataset

Returns the Q3 median-value for the specified series and item.

getQ3Value(Comparable, Comparable) - Method in interface org.jfree.data.statistics.BoxAndWhiskerCategoryDataset

Returns the q3median value for an item.

getQ3Value(Comparable, Comparable) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the third quartile value.

getQuadrantOrigin() - Method in class org.jfree.chart.plot.XYPlot

Returns the origin for the quadrants that can be displayed on the plot.

getQuadrantPaint(int) - Method in class org.jfree.chart.plot.XYPlot

Returns the paint used for the specified quadrant.

getQualityAnnotation() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurement

getQualityAnnotation() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurementInterface

getQuarter() - Method in class org.jfree.data.time.Quarter

Returns the quarter.

getRadialAxis() - Method in class org.jfree.chart.plot.PolarPlot

Returns the radius axis for the plot.

getRadius() - Method in class org.jfree.chart.renderer.Outlier

Returns the radius of the outlier ellipse.

getRadiusGridlinePaint() - Method in class org.jfree.chart.plot.PolarPlot

Returns the paint for the grid lines (if any) plotted against the radius axis.

getRadiusGridlineStroke() - Method in class org.jfree.chart.plot.PolarPlot

Returns the stroke for the grid lines (if any) plotted against the radius axis.

getRange() - Method in class org.jfree.chart.axis.ValueAxis

Returns the range for the axis.

getRange() - Method in class org.jfree.chart.plot.MeterPlot

Returns the overall range for the dial.

getRangeAxis() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the range axis for the plot.

getRangeAxis() - Method in class org.jfree.chart.plot.ContourPlot

Returns the range axis for the plot.

getRangeAxis() - Method in class org.jfree.chart.plot.FastScatterPlot

Returns the range axis for the plot.

getRangeAxis() - Method in class org.jfree.chart.plot.ThermometerPlot

Returns the range axis.

getRangeAxis() - Method in class org.jfree.chart.plot.XYPlot

Returns the range axis for the plot.

getRangeAxis(int) - Method in class org.jfree.chart.plot.CategoryPlot

Returns a range axis.

getRangeAxis(int) - Method in class org.jfree.chart.plot.XYPlot

Returns a range axis.

getRangeAxisCount() - Method in class org.jfree.chart.plot.XYPlot

Returns the number of range axes.

getRangeAxisEdge() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the edge where the primary range axis is located.

getRangeAxisEdge() - Method in class org.jfree.chart.plot.XYPlot

Returns the edge for the primary range axis.

getRangeAxisEdge(int) - Method in class org.jfree.chart.plot.CategoryPlot

Returns the edge for a range axis.

getRangeAxisEdge(int) - Method in class org.jfree.chart.plot.XYPlot

Returns the edge for a range axis.

getRangeAxisForDataset(int) - Method in class org.jfree.chart.plot.CategoryPlot

Returns the range axis for a dataset.

getRangeAxisForDataset(int) - Method in class org.jfree.chart.plot.XYPlot

Returns the range axis for a dataset.

getRangeAxisLocation() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the range axis location.

getRangeAxisLocation() - Method in class org.jfree.chart.plot.XYPlot

Returns the location of the primary range axis.

getRangeAxisLocation(int) - Method in class org.jfree.chart.plot.CategoryPlot

Returns the location for a range axis.

getRangeAxisLocation(int) - Method in class org.jfree.chart.plot.XYPlot

Returns the location for a range axis.

getRangeAxisPropertyEditPanel() - Method in class org.jfree.chart.ui.PlotPropertyEditPanel

Returns a reference to the panel for editing the properties of the range axis.

getRangeBase() - Method in class org.jfree.chart.renderer.XYStepAreaRenderer

Returns the value on the range axis which defines the 'lower' border of the area.

getRangeCrosshairPaint() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the range crosshair color.

getRangeCrosshairPaint() - Method in class org.jfree.chart.plot.ContourPlot

Returns the range crosshair color.

getRangeCrosshairPaint() - Method in class org.jfree.chart.plot.XYPlot

Returns the range crosshair color.

getRangeCrosshairStroke() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the pen-style (Stroke) used to draw the crosshair (if visible).

getRangeCrosshairStroke() - Method in class org.jfree.chart.plot.ContourPlot

Returns the Stroke used to draw the crosshair (if visible).

getRangeCrosshairStroke() - Method in class org.jfree.chart.plot.XYPlot

Returns the Stroke used to draw the crosshair (if visible).

getRangeCrosshairValue() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the range crosshair value.

getRangeCrosshairValue() - Method in class org.jfree.chart.plot.ContourPlot

Returns the range crosshair value.

getRangeCrosshairValue() - Method in class org.jfree.chart.plot.XYPlot

Returns the range crosshair value.

getRangeDescription() - Method in class org.jfree.data.time.TimePeriodValues

Returns the range description.

getRangeDescription() - Method in class org.jfree.data.time.TimeSeries

Returns the range description.

getRangeExtent(CategoryDataset) - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer

Returns the range of values the renderer requires to display all the items from the specified dataset.

getRangeExtent(CategoryDataset) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the range of values the renderer requires to display all the items from the specified dataset.

getRangeExtent(CategoryDataset) - Method in class org.jfree.chart.renderer.GroupedStackedBarRenderer

Returns the range of values the renderer requires to display all the items from the specified dataset.

getRangeExtent(CategoryDataset) - Method in class org.jfree.chart.renderer.StackedAreaRenderer

Returns the range of values the renderer requires to display all the items from the specified dataset.

getRangeExtent(CategoryDataset) - Method in class org.jfree.chart.renderer.StackedBarRenderer

Returns the range of values the renderer requires to display all the items from the specified dataset.

getRangeExtent(CategoryDataset) - Method in class org.jfree.chart.renderer.StackedBarRenderer3D

Returns the range of values the renderer requires to display all the items from the specified dataset.

getRangeExtent(CategoryDataset) - Method in class org.jfree.chart.renderer.WaterfallBarRenderer

Returns the range of values the renderer requires to display all the items from the specified dataset.

getRangeExtent(Dataset) - Static method in class org.jfree.data.DatasetUtilities

Returns the range of values in the range for the dataset.

getRangeExtent(XYDataset) - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer

Returns the range of values the renderer requires to display all the items from the specified dataset.

getRangeExtent(XYDataset) - Method in class org.jfree.chart.renderer.StackedXYAreaRenderer

Returns the range of values the renderer requires to display all the items from the specified dataset.

getRangeExtent(XYDataset) - Method in class org.jfree.chart.renderer.StackedXYAreaRenderer2

Returns the range of values the renderer requires to display all the items from the specified dataset.

getRangeExtent(XYDataset) - Method in class org.jfree.chart.renderer.StackedXYBarRenderer

Returns the range of values the renderer requires to display all the items from the specified dataset.

getRangeExtent(XYDataset) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the range of values the renderer requires to display all the items from the specified dataset.

getRangeGridlinePaint() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the paint used to draw the grid-lines against the range axis.

getRangeGridlinePaint() - Method in class org.jfree.chart.plot.FastScatterPlot

Returns the paint for the grid lines (if any) plotted against the range axis.

getRangeGridlinePaint() - Method in class org.jfree.chart.plot.XYPlot

Returns the paint for the grid lines (if any) plotted against the range axis.

getRangeGridlineStroke() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the stroke used to draw the grid-lines against the range axis.

getRangeGridlineStroke() - Method in class org.jfree.chart.plot.FastScatterPlot

Returns the stroke for the grid lines (if any) plotted against the range axis.

getRangeGridlineStroke() - Method in class org.jfree.chart.plot.XYPlot

Returns the stroke for the grid lines (if any) plotted against the range axis.

getRangeMarkers(int, Layer) - Method in class org.jfree.chart.plot.CategoryPlot

Returns a collection of range markers for a particular renderer and layer.

getRangeMarkers(int, Layer) - Method in class org.jfree.chart.plot.XYPlot

Returns a collection of range markers for a particular renderer and layer.

getRangeMarkers(Layer) - Method in class org.jfree.chart.plot.CategoryPlot

Returns the list of range markers (read only) for the specified layer.

getRangeMarkers(Layer) - Method in class org.jfree.chart.plot.XYPlot

Returns the list of range markers (read only) for the specified layer.

getRangeTickBandPaint() - Method in class org.jfree.chart.plot.XYPlot

Returns the paint used for the range tick bands.

getRangeType() - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer

Returns the range type for the renderer.

getRangeType() - Method in class org.jfree.chart.renderer.StackedXYAreaRenderer

Returns the range type.

getRangeType() - Method in class org.jfree.chart.renderer.StackedXYAreaRenderer2

Returns the range type.

getRangeType() - Method in class org.jfree.chart.renderer.StackedXYBarRenderer

Returns the range type.

getRangeType() - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the range type for the renderer.

getRangeUnits() - Method in class org.BioStatisticalCategoryDataset

getRangValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.DoubleAndSourceList

getRankValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.Tie

getRankValues(Double[], Double[]) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics

getRankValues(Collection<Double>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics

getRaster(int, int, int, int) - Method in class org.graffiti.plugins.views.defaults.RoundGradientContext

getRateRuleHeadlines(Graph) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLRuleHelper

getRawTextFileColumnInformation(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionReader

getRcolor(float) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics

getRcolor(float, double, Color, Color, Color) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics

Returns col1 if maxOrMinR is -1, returns col2 if maxOrMinR is 1, returns a color between these colors if marOrMin is between -1 and 1.

getRDFId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.MyPathWay

getRDFId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.MyPathWay

getReachableLeafNodes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getReactantClones() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getReactants(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

The edges with the simple species references will be returned

getReaction() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.ReactionLabel

getReaction() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.ReactionAndInfo

getReaction(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathService

getReaction(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns a JSBML Reaction object belonging to a reaction node

getReactionClones() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getReactionCompartment(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the compartment of a reaction

getReactionConstant(Edge) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the value of the attribute constant

getReactionElementsFromGraphEdges(Collection<Entry>, Collection<Edge>, Collection<Gml2PathwayWarningInformation>, Collection<Gml2PathwayErrorInformation>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Reaction

getReactionElementsFromGraphNodes(Collection<Entry>, List<Node>, Collection<Gml2PathwayWarningInformation>, Collection<Gml2PathwayErrorInformation>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Reaction

getReactionFast(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the attribute fast of a reaction

getReactionFromId(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionService

getReactionFromKgmlReactionElement(Element, Collection<Entry>, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Reaction

getReactionID() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.ReactionIDSpeciesIDWrapper

getReactionID(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the id of a reaction

getReactionName(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the name of a reaction

getReactionNetwork() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.kegg_reaction.CreateKeggReactionNetworkAlgorithm

getReactionNode(String, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getReactionNode(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the reaction node with a distinct id

getReactionNodes(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns all reaction nodes of the graph

getReactionReversible(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the attribute reversible of a reaction

getReactions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Entry

getReactions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway

getReactionSpecies(Edge) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the species

getReactionSpeciesID(Edge) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Return the species id

getReactionSpeciesName(Edge) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the species name

getReactiontype(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.ReactionType

getReactionType() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.NodeCombination

getRealBounds2D() - Method in interface org.graffiti.plugin.view.GraphElementShape

DOCUMENT ME!

getRealBounds2D() - Method in class org.graffiti.plugins.views.defaults.LineEdgeShape

Returns the correct bounding box with coordinates relative to the view.

getRealBounds2D() - Method in class org.graffiti.plugins.views.defaults.RectangularNodeShape

Returns a Rectangle2D that represents the encapsulated Rectangle2D, but has coordinates transformed relative to the view (instead of relative to the NodeComponent).

getRealNumberOfCPUs() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.threading.SystemAnalysis

Use getNumberOfCPUs to determine the number of CPUs to be used for parallel computing.

getRealSystemMemoryInByte() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.threading.SystemAnalysis

getRectangles() - Method in class placement.Graph

getRed() - Method in class org.graffiti.graphics.ColorAttribute

Returns the 'red'-value of the encapsulated color.

getRedoPresentationName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.KeggNavigationToolbarCommand

getRedoPresentationName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.zoomfit.AlignNodesCommand

getRedoPresentationName() - Method in class org.graffiti.plugin.algorithm.AbstractAlgorithm

getRef() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.IdRef

getReference() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.KeggId

getReference() - Method in class org.graffiti.graphics.ImageAttribute

Returns the 'reference'-value of the encapsulated image.

getReferencePathway() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.KeggId

getReferenceReaction() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.KeggId

getReferenceURL(Attributable) - Static method in class org.AttributeHelper

getRegisteredChangeListeners() - Static method in class org.vanted.scaling.ScalingSlider

getRelAlign() - Method in class org.graffiti.graphics.EdgeLabelPositionAttribute

Returns the relAlign.

getRelation() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.RelationLabel

getRelationElementsFromGraph(Collection<Entry>, Graph, Collection<Gml2PathwayWarningInformation>, Collection<Gml2PathwayErrorInformation>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation

getRelationFromKgmlRelationElement(Element, Collection<Entry>, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation

getRelations() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway

getRelationSourceAndTargets(Edge) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getRelationSourceTarget(Edge, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getRelationSubtypeName(Edge, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getRelationSubTypeNames(Edge) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getRelationType(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.RelationType

getRelationTypes(Edge) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper

getRelativeCenterPosition(JDialog) - Static method in class org.graffiti.editor.MainFrame

getReleaseVersionForEnzymeClasses() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeService

getReleaseVersionForEnzymeInformation() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionService

getReleaseVersionForEnzymeInformation() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeService

getReleaseVersionForTranspath() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathService

getRelevantAffymetrixAnnotationColumnHeaders() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData

getRelHor() - Method in class org.graffiti.graphics.NodeLabelPositionAttribute

Returns the relHor.

getRelVert() - Method in class org.graffiti.graphics.NodeLabelPositionAttribute

Returns the relVert.

getRemainTime(boolean, double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.ProgressStatusService

getRemark() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggDatabases

getRemark() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

getRemark() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader

getRemark() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface

getRemark() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface

getRemoveHTML() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.RSSFeedManager

getRenderer() - Method in class org.graffiti.plugin.parameter.ObjectListParameter

getRenderer() - Method in class org.jfree.chart.event.RendererChangeEvent

Returns the renderer that generated the event.

getRenderer() - Method in class org.jfree.chart.plot.CategoryPlot

Returns a reference to the renderer for the plot.

getRenderer() - Method in class org.jfree.chart.plot.PolarPlot

Returns the item renderer.

getRenderer() - Method in class org.jfree.chart.plot.XYPlot

Returns the renderer for the primary dataset.

getRenderer(int) - Method in class org.jfree.chart.plot.CategoryPlot

Returns a renderer.

getRenderer(int) - Method in class org.jfree.chart.plot.XYPlot

Returns the renderer for a dataset, or null.

getRendererForDataset(CategoryDataset) - Method in class org.jfree.chart.plot.CategoryPlot

Returns the renderer for the specified dataset.

getRendererForDataset(XYDataset) - Method in class org.jfree.chart.plot.XYPlot

Returns the renderer for the specified dataset.

getRenderingHints() - Method in class org.jfree.chart.JFreeChart

Returns the collection of rendering hints for the chart.

getRenderingOrder() - Method in class org.jfree.chart.StandardLegend

Returns the legend rendering order.

getReplicateColumns(TableData, TimeAndPlantName, int, int, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentData

getReplicateCount() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint

Returns the number of replicates, if this datapoint represents a mean-value datapoint.

getReplicateId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingId

getReplicateID() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Measurement

getReplicateID() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MemSample

getReplicateID() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurement

getReplicateID() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurementInterface

getReplicateID() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverage

getReplicateID() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverageInterface

getReplicateID() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DataRowExcelExport

getReplicateIDs() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation

getReplicateNumber() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DataColumnHeader

getReplicateNumber() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ReplicateDouble

getRes(String) - Method in class org.graffiti.core.GenericBundle

Returns the relative location of the specified resource.

getReshowDelay() - Method in class org.jfree.chart.ChartPanel

Returns the reshow tooltip delay value used inside this chart panel.

getResource(Class<?>, String) - Static method in class org.graffiti.editor.GravistoService

getResource(Class<?>, String, String) - Static method in class org.graffiti.editor.GravistoService

getResources() - Method in class org.jfree.chart.demo.JFreeChartDemoBase

This makes the resources bundle available.

getResult() - Method in interface org.graffiti.plugin.algorithm.AlgorithmResult

Returns the Map.

getResult() - Method in interface org.graffiti.plugin.algorithm.CalculatingAlgorithm

Returns the AlgorithmResult that was computed by the Algorithm during the last execution.

getResult() - Method in class org.graffiti.plugin.algorithm.DefaultAlgorithmResult

getResultString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.exact_fisher_test.FisherProbability

getReversible(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getRevolutionDistance() - Method in class org.jfree.chart.plot.CompassPlot

Gets the count to complete one revolution.

getRight() - Method in class org.jfree.chart.axis.AxisSpace

Returns the right space.

getRightArrow() - Method in class org.jfree.chart.axis.ValueAxis

Returns a shape that can be displayed as an arrow pointing right at the end of an axis line.

getRightCategoryLabelPosition() - Method in class org.jfree.chart.axis.CategoryAxis

Deprecated.

Use getCategoryLabelPositions().getLabelPosition(RectangleEdge.RIGHT).

getRlist() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.CorrelationResult

getRollCount() - Method in class org.jfree.chart.axis.DateTickUnit

Returns the roll count.

getRollUnit() - Method in class org.jfree.chart.axis.DateTickUnit

Returns the roll unit.

getRoot() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.BriteHierarchy

getRoot() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.AbstractTreeTableModel

getRootPlot() - Method in class org.jfree.chart.plot.Plot

Returns the root plot.

getRotateX() - Method in class org.jfree.chart.needle.MeterNeedle

Returns the scalar used for determining the rotation x value.

getRotateY() - Method in class org.jfree.chart.needle.MeterNeedle

Returns the scalar used for determining the rotation y value.

getRotationAnchor() - Method in class org.jfree.chart.annotations.TextAnnotation

Returns the rotation anchor.

getRotationAnchor() - Method in class org.jfree.chart.axis.CategoryLabelPosition

Returns the rotation anchor point.

getRotationAnchor() - Method in class org.jfree.chart.axis.Tick

Returns the text anchor that defines the point around which the label is rotated.

getRotationAnchor() - Method in class org.jfree.chart.labels.ItemLabelPosition

Returns the rotation anchor point.

getRotationAngle() - Method in class org.jfree.chart.annotations.TextAnnotation

Returns the rotation angle.

getRoundedEdges() - Method in class org.graffiti.graphics.GraphElementGraphicAttribute

Returns the rounding of the edges.

getRoundedEdges(Node) - Static method in class org.AttributeHelper

getRounding() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getRow() - Method in class info.clearthought.layout.TableLayout

Gets the height of a single row in this layout.

getRow(int) - Method in class info.clearthought.layout.TableLayout

Gets the sizes of a row in this layout.

getRowCount() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.AddonTableModel

getRowCount() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.XlsTableModel

getRowCount() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.TreeTableModelAdapter

getRowCount() - Method in class org.FolderPanel

getRowCount() - Method in class org.graffiti.plugins.views.matrix.MatrixModel

getRowCount() - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer

Returns the number of rows in the dataset.

getRowCount() - Method in class org.jfree.data.DefaultCategoryDataset

Returns the number of rows in the table.

getRowCount() - Method in class org.jfree.data.DefaultIntervalCategoryDataset

Returns the number of series in the dataset (possibly zero).

getRowCount() - Method in class org.jfree.data.DefaultKeyedValues2D

Returns the row count.

getRowCount() - Method in class org.jfree.data.gantt.TaskSeriesCollection

Returns the number of rows (series) in the collection.

getRowCount() - Method in class org.jfree.data.KeyedObjects2D

Returns the row count.

getRowCount() - Method in class org.jfree.data.MatrixSeries

Returns the number of rows in this matrix series.

getRowCount() - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the number of rows in the table.

getRowCount() - Method in class org.jfree.data.statistics.DefaultStatisticalCategoryDataset

Returns the number of rows in the table.

getRowCount() - Method in class org.jfree.data.TimeSeriesTableModel

Returns the number of rows in the table model.

getRowCount() - Method in interface org.jfree.data.Values2D

Returns the number of rows in the table.

getRowCount() - Method in class org.jfree.data.XYDatasetTableModel

Returns the number of rows.

getRowCount() - Method in class qmwi.kseg.som.diagram.DiagrammPaneData

getRowCount method comment.

getRowCount() - Method in class qmwi.kseg.som.diagram.TableDataTest

getRowCount method comment.

getRowId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getRowId() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getRowId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample

getRowId() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface

getRowId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getRowId() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getRowIndex(Comparable) - Method in class org.jfree.data.DefaultCategoryDataset

Returns the row index for a given key.

getRowIndex(Comparable) - Method in class org.jfree.data.DefaultIntervalCategoryDataset

Returns a row index.

getRowIndex(Comparable) - Method in class org.jfree.data.DefaultKeyedValues2D

Returns the row index for a given key.

getRowIndex(Comparable) - Method in class org.jfree.data.gantt.TaskSeriesCollection

Returns the row index for the given row key.

getRowIndex(Comparable) - Method in class org.jfree.data.KeyedObjects2D

Returns the row index for a given key.

getRowIndex(Comparable) - Method in interface org.jfree.data.KeyedValues2D

Returns the row index for a given key.

getRowIndex(Comparable) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the row index for a given key.

getRowIndex(Comparable) - Method in class org.jfree.data.statistics.DefaultStatisticalCategoryDataset

Returns the row index for a given key.

getRowKey(int) - Method in class org.jfree.data.DefaultCategoryDataset

Returns a row key.

getRowKey(int) - Method in class org.jfree.data.DefaultIntervalCategoryDataset

Returns the name of the specified series.

getRowKey(int) - Method in class org.jfree.data.DefaultKeyedValues2D

Returns the key for a given row.

getRowKey(int) - Method in class org.jfree.data.gantt.TaskSeriesCollection

Returns the key for a row.

getRowKey(int) - Method in class org.jfree.data.KeyedObjects2D

Returns the key for a given row.

getRowKey(int) - Method in interface org.jfree.data.KeyedValues2D

Returns a row key.

getRowKey(int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns a row key.

getRowKey(int) - Method in class org.jfree.data.statistics.DefaultStatisticalCategoryDataset

Returns a row key.

getRowKeys() - Method in class org.jfree.data.DefaultCategoryDataset

Returns the row keys.

getRowKeys() - Method in class org.jfree.data.DefaultIntervalCategoryDataset

Returns a list of the series in the dataset.

getRowKeys() - Method in class org.jfree.data.DefaultKeyedValues2D

Returns the row keys.

getRowKeys() - Method in class org.jfree.data.gantt.TaskSeriesCollection

Returns the row keys.

getRowKeys() - Method in class org.jfree.data.KeyedObjects2D

Returns the row keys.

getRowKeys() - Method in interface org.jfree.data.KeyedValues2D

Returns the row keys.

getRowKeys() - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the row keys.

getRowKeys() - Method in class org.jfree.data.statistics.DefaultStatisticalCategoryDataset

Returns the row keys.

getRowName(int) - Method in class org.graffiti.plugins.views.matrix.MatrixModel

getRowRenderingOrder() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the order in which the rows should be rendered.

getRows() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetTable

getRSSfeed() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.ProvidesRSSfeed

Deprecated.

getRunningReleaseStatus() - Static method in class org.ReleaseInfo

getRunStatus() - Method in class org.graffiti.plugin.algorithm.ThreadSafeOptions

getRunThread() - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskHelper

getSampcomp() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation

getSampleAverage() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample

getSampleAverage() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface

getSampleCountForSubstanceNode(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

getSampleNodes(Document, Integer, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

getSamples(SubstanceColumnInformation, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData

getSampleTime() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample

getSampleTime() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface

getSampleTime(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

getSampleTimeIterator(TableData, String, int, int, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentData

getSampleTimeUnit(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

getSampleTimeValueForComparison(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

getSampleValues(boolean, int, int, String, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData

getSampmeas() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation

getSamptimepoint() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation

getSamptimeunit() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation

getSaveAttributeName(String) - Static method in class org.AttributeHelper

getSaveFile(String[], String) - Static method in class org.OpenFileDialogService

getSBMLid(GraphElement) - Static method in class org.AttributeHelper

getSBMLModel(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter

getSBMLrole(GraphElement) - Static method in class org.AttributeHelper

getSBOTerm(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.KineticLawHelper

getSBOTerm(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter

getSBOTerm(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getSBOTerm(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper

getSBOTermModifier(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getSBOTermProduct(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getSBOTermReactant(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getScale() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.BufferedImageResult

getScale(double) - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SizeSettingZoom

getScaledDataArea() - Method in class org.jfree.chart.ChartPanel

Returns the data area for the chart (the area inside the axes) with the current scaling applied.

getScaledImage(BufferedImage, int, int) - Static method in class org.graffiti.editor.GravistoService

getScaledImage(Image, int, int) - Static method in class org.graffiti.editor.GravistoService

getScaleDPIprintDPI() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams

getScaleDPIprintSize() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams

getScaleDPIprintSizeUnit() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams

getScaleFactor() - Method in class org.jfree.data.NormalizedMatrixSeries

Returns the factor that multiplies each item in this series when observed using getItem mehtod.

getScaleFactor() - Method in class org.vanted.scaling.scalers.BasicScaler

The current scaling factor.

getScaleFixedUseWidthOrHeightValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams

getScaleSetting() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams

getScaleType() - Method in class org.jfree.chart.renderer.XYBubbleRenderer

Returns the scale type.

getScaleX() - Method in class org.jfree.chart.ChartPanel

Returns the X scale factor for the chart.

getScaleY() - Method in class org.jfree.chart.ChartPanel

Returns the Y scale factory for the chart.

getScaleZoomSetting() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams

getScatterPlot(Graph) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics

getScenarioCommand() - Method in class org.graffiti.plugin.parameter.BooleanParameter

getScenarioCommand() - Method in class org.graffiti.plugin.parameter.DoubleParameter

getScenarioCommand() - Method in class org.graffiti.plugin.parameter.IntegerParameter

getScenarioCommand() - Method in class org.graffiti.plugin.parameter.StringParameter

getScenarioCommand() - Method in interface scenario.ProvidesScenarioSupportCommand

getScenarioCommands() - Method in interface scenario.ProvidesScenarioSupportCommands

getScenarioCommands() - Method in class scenario.Scenario

getScenarioImports() - Method in class org.graffiti.plugin.parameter.BooleanParameter

getScenarioImports() - Method in class org.graffiti.plugin.parameter.DoubleParameter

getScenarioImports() - Method in class org.graffiti.plugin.parameter.IntegerParameter

getScenarioImports() - Method in class org.graffiti.plugin.parameter.StringParameter

getScenarioImports() - Method in interface scenario.ProvidesScenarioSupportCommand

getScenarioImports() - Method in interface scenario.ProvidesScenarioSupportCommands

getScore() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getScore() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getScriptCommandForRecreationOfThisObject() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption

getSearchAttributeDouble() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption

getSearchAttributeInteger() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption

getSearchAttributeName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption

getSearchAttributePath() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption

getSearchAttributeString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption

getSearchIcon() - Static method in class org.FolderPanel

getSearchLogic() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption

getSearchNodeOrEdge() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption

getSearchOperation() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption

getSearchOption() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOptionEditorGUI

getSearchOptionEditorGUI(Collection<AttributePathNameSearchType>, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption

getSearchOptionEditorGUI(Collection<AttributePathNameSearchType>, boolean, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption

getSearchScriptCommands(ArrayList<SearchOption>, boolean, ArrayList<String>, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption

getSearchType() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.AttributePathNameSearchType

getSearchType() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption

getSecond() - Method in class org.jfree.data.time.Millisecond

Returns the second.

getSecond() - Method in class org.jfree.data.time.Second

Returns the second within the minute.

getSecondNode() - Method in class org.graffiti.event.GraphEvent

Returns the node that is concerned with that event, e.g.: the node that has been / is to be removed.

getSectionIndex() - Method in class org.jfree.chart.entity.PieSectionEntity

Returns the section index.

getSectionKey() - Method in class org.jfree.chart.entity.PieSectionEntity

Returns the section key.

getSectionOutlinePaint() - Method in class org.jfree.chart.plot.PiePlot

Returns the outline paint for ALL sections in the plot.

getSectionOutlinePaint(int) - Method in class org.jfree.chart.plot.PiePlot

Returns the paint for the specified section.

getSectionOutlineStroke() - Method in class org.jfree.chart.plot.PiePlot

Returns the outline stroke for ALL sections in the plot.

getSectionOutlineStroke(int) - Method in class org.jfree.chart.plot.PiePlot

Returns the stroke for the specified section.

getSectionPaint() - Method in class org.jfree.chart.plot.PiePlot

Returns the paint for ALL sections in the plot.

getSectionPaint(int) - Method in class org.jfree.chart.plot.PiePlot

Returns the paint for the specified section.

getSecure() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getSecure() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getSegment(long) - Method in class org.jfree.chart.axis.SegmentedTimeline

Returns a segment that contains a domainValue.

getSegment(Date) - Method in class org.jfree.chart.axis.SegmentedTimeline

Returns a segment that contains a date.

getSegmentCount() - Method in class org.jfree.chart.axis.SegmentedTimeline.Segment

Returns always one (the number of segments contained in this segment).

getSegmentEnd() - Method in class org.jfree.chart.axis.SegmentedTimeline.Segment

Gets the end of this segment in ms.

getSegmentNumber() - Method in class org.jfree.chart.axis.SegmentedTimeline.Segment

Returns the segment number of this segment.

getSegmentsExcluded() - Method in class org.jfree.chart.axis.SegmentedTimeline

Returns the number of segments excluded per segment group.

getSegmentsExcludedSize() - Method in class org.jfree.chart.axis.SegmentedTimeline

Returns the size in milliseconds of the segments excluded per segment group.

getSegmentsGroupSize() - Method in class org.jfree.chart.axis.SegmentedTimeline

Returns the size in milliseconds of a segment group.

getSegmentsIncluded() - Method in class org.jfree.chart.axis.SegmentedTimeline

Returns the number of segments included per segment group.

getSegmentsIncludedSize() - Method in class org.jfree.chart.axis.SegmentedTimeline

Returns the size in ms of the segments included per segment group.

getSegmentSize() - Method in class org.jfree.chart.axis.SegmentedTimeline

Returns the size of one segment in ms.

getSegmentStart() - Method in class org.jfree.chart.axis.SegmentedTimeline.Segment

Gets the start of this segment in ms.

getSelectClusterAlgorithm() - Static method in class vanted_feature.PluginFeatureClusterCommands

getSelected() - Method in class org.vanted.plugins.layout.multilevelframework.MLFParamModel.LayoutAlgGroup

getSelected() - Method in class org.vanted.plugins.layout.multilevelframework.MLFParamModel.MergerGroup

getSelected() - Method in class org.vanted.plugins.layout.multilevelframework.MLFParamModel.PlacerGroup

getSelected() - Method in class org.vanted.plugins.layout.stressminimization.StressMinParamModel.RadiosOFEnum

getSelectedColor() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.MyColorButton

getSelectedInitialLayout() - Method in class org.vanted.plugins.layout.stressminimization.StressMinParamModel.PreprocessingGroup

getSelectedItems() - Method in class org.graffiti.managers.pluginmgr.PluginSelector

Returns the selected plugin entries.

getSelectedItems() - Method in class org.graffiti.plugin.actions.SelectionAction

Returns the current list of selected items of this action.

getSelectedNodes(EditorSession) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getSelectedOrAllEdges() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getSelectedOrAllEdges(Selection, Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getSelectedOrAllEdges(EditorSession) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getSelectedOrAllGraphElements() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getSelectedOrAllGraphElements(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getSelectedOrAllGraphElements(Selection, Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getSelectedOrAllGraphElements(EditorSession) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getSelectedOrAllHelperNodes(EditorSession) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getSelectedOrAllNodes() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getSelectedOrAllNodes(Selection, Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

Returns a list of the currently selected nodes.

getSelectedOrAllNodes(EditorSession) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getSelectedPalette() - Method in class org.jfree.chart.ui.PaletteChooserPanel

Returns the selected palette.

getSelectedTab() - Method in class org.graffiti.plugins.inspectors.defaults.Inspector

getSelectedView() - Method in class org.graffiti.editor.ViewTypeChooser

Returns the index of the selected view in the list.

getSelection() - Method in class org.graffiti.editor.GraffitiButtonGroup

Returns the model of the selected button.

getSelection() - Method in class org.graffiti.plugin.actions.SelectionAction

getSelection() - Method in class org.graffiti.plugin.algorithm.ThreadSafeOptions

getSelection() - Method in class org.graffiti.plugin.parameter.SelectionParameter

Returns the selection encapsulated in this parameter.

getSelection() - Method in class org.graffiti.selection.SelectionEvent

Returns the selection contained in the event.

getSelectionAlgorithms() - Static method in class vanted_feature.PluginFeatureHierarchyCommands

getSelectionModel() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.CheckTreeManager

getSelectionModel() - Method in class org.graffiti.session.EditorSession

Returns the selectionModel.

getSenderHostNameOrIP() - Method in class de.ipk_gatersleben.ag_nw.graffiti.UDPreceiveStructure

getSequence() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getSequence() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getSequence() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

getSequence() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader

getSequence() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface

getSequence() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface

getSerialDate() - Method in class org.jfree.data.time.Day

Returns the day as a SerialDate.

getSerialIndex() - Method in class org.jfree.data.time.Day

Returns a serial index number for the day.

getSerialIndex() - Method in class org.jfree.data.time.FixedMillisecond

Returns a serial index number for the millisecond.

getSerialIndex() - Method in class org.jfree.data.time.Hour

Returns a serial index number for the hour.

getSerialIndex() - Method in class org.jfree.data.time.Millisecond

Returns a serial index number for the millisecond.

getSerialIndex() - Method in class org.jfree.data.time.Minute

Returns a serial index number for the minute.

getSerialIndex() - Method in class org.jfree.data.time.Month

Returns a serial index number for the month.

getSerialIndex() - Method in class org.jfree.data.time.Quarter

Returns a serial index number for the quarter.

getSerialIndex() - Method in class org.jfree.data.time.RegularTimePeriod

Returns a serial index number for the time unit.

getSerialIndex() - Method in class org.jfree.data.time.Second

Returns a serial index number for the minute.

getSerialIndex() - Method in class org.jfree.data.time.Week

Returns a serial index number for the week.

getSerialIndex() - Method in class org.jfree.data.time.Year

Returns a serial index number for the year.

getSeries() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyDouble

getSeries() - Method in class org.jfree.chart.entity.CategoryItemEntity

Returns the series index.

getSeries() - Method in class org.jfree.chart.entity.XYItemEntity

Deprecated.

Renamed getSeriesIndex().

getSeries() - Method in class org.jfree.data.DefaultIntervalCategoryDataset

Returns a list of the series in the dataset.

getSeries() - Method in class org.jfree.data.time.TimeSeriesCollection

Returns a list of all the series in the collection.

getSeries() - Method in class org.jfree.data.XYSeriesCollection

Returns a list of all the series in the collection.

getSeries(int) - Method in class org.jfree.data.DefaultIntervalCategoryDataset

Returns the name of the specified series.

getSeries(int) - Method in class org.jfree.data.DefaultTableXYDataset

Returns a series.

getSeries(int) - Method in class org.jfree.data.MatrixSeriesCollection

Returns the series having the specified index.

getSeries(int) - Method in class org.jfree.data.time.TimePeriodValuesCollection

Returns a series.

getSeries(int) - Method in class org.jfree.data.time.TimeSeriesCollection

Returns a series.

getSeries(int) - Method in class org.jfree.data.XYSeriesCollection

Returns a series.

getSeries(String) - Method in class org.jfree.data.time.TimeSeriesCollection

Returns the series with the specified name, or null if there is no such series.

getSeriesBarWidth(int, CategoryItemRendererState) - Method in class org.jfree.chart.renderer.LayeredBarRenderer

Returns the bar width for a series.

getSeriesColor(String, Color) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttribute

getSeriesColors(Collection<String>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttribute

getSeriesCount() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyXML_XYDataset

getSeriesCount() - Method in class org.jfree.chart.demo.EmptyXYDataset

Returns the number of series in the dataset.

getSeriesCount() - Method in class org.jfree.chart.demo.SampleSignalDataset

Returns the number of series in the dataset.

getSeriesCount() - Method in class org.jfree.chart.demo.SampleXYDataset

Returns the number of series in the dataset.

getSeriesCount() - Method in class org.jfree.chart.demo.SampleXYDataset2

Returns the number of series in the dataset.

getSeriesCount() - Method in class org.jfree.chart.demo.SampleXYSymbolicDataset

Returns the number of series in the dataset.

getSeriesCount() - Method in class org.jfree.chart.demo.SampleXYZDataset

Returns the number of series in the dataset.

getSeriesCount() - Method in class org.jfree.chart.demo.SampleYSymbolicDataset

Returns the number of series in the dataset.

getSeriesCount() - Method in class org.jfree.chart.demo.SimpleIntervalXYDataset

Returns the number of series in the dataset.

getSeriesCount() - Method in class org.jfree.chart.demo.SimpleIntervalXYDataset2

Returns the number of series in the dataset.

getSeriesCount() - Method in class org.jfree.chart.plot.PolarPlot

Returns the number of series in the dataset for this plot.

getSeriesCount() - Method in class org.jfree.chart.plot.XYPlot

Returns the number of series in the primary dataset for this plot.

getSeriesCount() - Method in class org.jfree.data.AbstractSeriesDataset

Returns the number of series in the dataset.

getSeriesCount() - Method in class org.jfree.data.CategoryTableXYDataset

Returns the number of series in the collection.

getSeriesCount() - Method in class org.jfree.data.CombinedDataset

Returns the number of series in the dataset.

getSeriesCount() - Method in class org.jfree.data.DefaultContourDataset

Returns the number of series.

getSeriesCount() - Method in class org.jfree.data.DefaultHighLowDataset

Returns the number of series in the dataset.

getSeriesCount() - Method in class org.jfree.data.DefaultIntervalCategoryDataset

Returns the number of series in the dataset (possibly zero).

getSeriesCount() - Method in class org.jfree.data.DefaultTableXYDataset

Returns the number of series in the collection.

getSeriesCount() - Method in class org.jfree.data.DefaultWindDataset

Returns the number of series in the dataset.

getSeriesCount() - Method in class org.jfree.data.gantt.TaskSeriesCollection

Returns the number of series in the collection.

getSeriesCount() - Method in class org.jfree.data.JDBCXYDataset

Returns the number of series in the dataset.

getSeriesCount() - Method in class org.jfree.data.MatrixSeriesCollection

Returns the number of series in the collection.

getSeriesCount() - Method in class org.jfree.data.OHLCDataset

Returns the series count.

getSeriesCount() - Method in interface org.jfree.data.SeriesDataset

Returns the number of series in the dataset.

getSeriesCount() - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerXYDataset

Returns the number of series in the dataset.

getSeriesCount() - Method in class org.jfree.data.statistics.HistogramDataset

Returns the number of series in the dataset.

getSeriesCount() - Method in class org.jfree.data.SubSeriesDataset

Returns the number of series in the dataset.

getSeriesCount() - Method in class org.jfree.data.time.DynamicTimeSeriesCollection

Returns the number of series in the collection.

getSeriesCount() - Method in class org.jfree.data.time.TimePeriodValuesCollection

Returns the number of series in the collection.

getSeriesCount() - Method in class org.jfree.data.time.TimeSeriesCollection

Returns the number of series in the collection.

getSeriesCount() - Method in class org.jfree.data.time.TimeTableXYDataset

Returns the number of series in the dataset.

getSeriesCount() - Method in class org.jfree.data.XYBarDataset

Returns the number of series in the dataset.

getSeriesCount() - Method in class org.jfree.data.XYSeriesCollection

Returns the number of series in the collection.

getSeriesFromSpeciesAndGenotype() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow

getSeriesId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getSeriesId() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getSeriesID() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint

getSeriesIDforLine(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

getSeriesIndex() - Method in class org.jfree.chart.entity.LegendItemEntity

Returns the series index.

getSeriesIndex() - Method in class org.jfree.chart.entity.XYItemEntity

Returns the series index.

getSeriesIndex(Object) - Method in class org.jfree.data.DefaultIntervalCategoryDataset

Returns a series index.

getSeriesInformation(String, String, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow

getSeriesItemLabelAnchor(int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Deprecated.

Use getSeriesPositiveItemLabelPosition() or getSeriesNegativeItemLabelPosition().

getSeriesItemLabelAnchor(int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Deprecated.

Use getSeriesPositiveItemLabelPosition() or getSeriesNegativeItemLabelPosition().

getSeriesItemLabelAngle(int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Deprecated.

Use getSeriesPositiveItemLabelPosition()/getSeriesNegativeItemLabelPosition().

getSeriesItemLabelFont(int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the font for all the item labels in a series.

getSeriesItemLabelFont(int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the font for all the item labels in a series.

getSeriesItemLabelFont(int) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the font for all the item labels in a series.

getSeriesItemLabelPaint(int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the paint used to draw the item labels for a series.

getSeriesItemLabelPaint(int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the paint used to draw the item labels for a series.

getSeriesItemLabelPaint(int) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the paint used to draw the item labels for a series.

getSeriesItemLabelRotationAnchor(int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Deprecated.

Use getSeriesPositiveItemLabelPosition()/getSeriesNegativeItemLabelPosition().

getSeriesItemLabelTextAnchor(int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Deprecated.

Use getSeriesPositiveItemLabelPosition()/getSeriesNegativeItemLabelPosition().

getSeriesItemLabelTextAnchor(int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Deprecated.

Use getSeriesPositiveItemLabelPosition() or getSeriesNegativeItemLabelPosition().

getSeriesItemURLGenerator(int) - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer

Returns the URL generator for a series.

getSeriesItemURLGenerator(int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the item URL generator for a series.

getSeriesLabelGenerator(int) - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer

Returns the label generator for a series.

getSeriesLabelGenerator(int) - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer

Returns the label generator for a series.

getSeriesLabelGenerator(int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the item label generator for a series.

getSeriesLabelGenerator(int) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the label generator for a series.

getSeriesLinesVisible(int) - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer

Returns the flag used to control whether or not the lines for a series are visible.

getSeriesName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingId

getSeriesName(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyXML_XYDataset

getSeriesName(int) - Method in class org.jfree.chart.demo.EmptyXYDataset

Returns the name of the series.

getSeriesName(int) - Method in class org.jfree.chart.demo.SampleSignalDataset

Returns the name of a series.

getSeriesName(int) - Method in class org.jfree.chart.demo.SampleXYDataset

Returns the name of the series.

getSeriesName(int) - Method in class org.jfree.chart.demo.SampleXYDataset2

Returns the name of the series.

getSeriesName(int) - Method in class org.jfree.chart.demo.SampleXYSymbolicDataset

Returns the name of the series.

getSeriesName(int) - Method in class org.jfree.chart.demo.SampleXYZDataset

Returns the name of a series.

getSeriesName(int) - Method in class org.jfree.chart.demo.SampleYSymbolicDataset

Returns the name of the series.

getSeriesName(int) - Method in class org.jfree.chart.demo.SimpleIntervalXYDataset

Returns the name of a series.

getSeriesName(int) - Method in class org.jfree.chart.demo.SimpleIntervalXYDataset2

Returns the name of a series.

getSeriesName(int) - Method in class org.jfree.data.AbstractSeriesDataset

Returns the name of a series.

getSeriesName(int) - Method in class org.jfree.data.CategoryTableXYDataset

Returns the name of a series.

getSeriesName(int) - Method in class org.jfree.data.CombinedDataset

Returns the name of a series.

getSeriesName(int) - Method in class org.jfree.data.DefaultContourDataset

Returns the name of the specified series.

getSeriesName(int) - Method in class org.jfree.data.DefaultHighLowDataset

Returns the name of the series stored in this dataset.

getSeriesName(int) - Method in class org.jfree.data.DefaultIntervalCategoryDataset

Returns the name of the specified series.

getSeriesName(int) - Method in class org.jfree.data.DefaultTableXYDataset

Returns the name of a series.

getSeriesName(int) - Method in class org.jfree.data.DefaultWindDataset

Returns the name of a series.

getSeriesName(int) - Method in class org.jfree.data.gantt.TaskSeriesCollection

Returns the name of a series.

getSeriesName(int) - Method in class org.jfree.data.JDBCXYDataset

Returns the name of the specified series.

getSeriesName(int) - Method in class org.jfree.data.MatrixSeriesCollection

Returns the name of a series.

getSeriesName(int) - Method in class org.jfree.data.OHLCDataset

Returns the series name.

getSeriesName(int) - Method in interface org.jfree.data.SeriesDataset

Returns the name of a series.

getSeriesName(int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerXYDataset

Returns the name of the series stored in this dataset.

getSeriesName(int) - Method in class org.jfree.data.statistics.HistogramDataset

Returns the name for a series.

getSeriesName(int) - Method in class org.jfree.data.SubSeriesDataset

Returns the name of a series.

getSeriesName(int) - Method in class org.jfree.data.time.DynamicTimeSeriesCollection

Returns the name of a series.

getSeriesName(int) - Method in class org.jfree.data.time.TimePeriodValuesCollection

Returns the name of a series.

getSeriesName(int) - Method in class org.jfree.data.time.TimeSeriesCollection

Returns the name of a series.

getSeriesName(int) - Method in class org.jfree.data.time.TimeTableXYDataset

Returns the name of a series.

getSeriesName(int) - Method in class org.jfree.data.XYBarDataset

Returns the name of a series.

getSeriesName(int) - Method in class org.jfree.data.XYSeriesCollection

Returns the name of a series.

getSeriesNameForLine(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

getSeriesNameFromSpeciesGenotypeAndTreatment(String, String, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

getSeriesNegativeItemLabelPosition(int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the item label position for all negative values in a series.

getSeriesNegativeItemLabelPosition(int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the item label position for all negative values in a series.

getSeriesNegativeItemLabelPosition(int) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the item label position for all negative values in a series.

getSeriesOutlineColor(String, Color) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttribute

getSeriesOutlineColors(Collection<String>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttribute

getSeriesOutlinePaint(int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the paint used to outline an item drawn by the renderer.

getSeriesOutlinePaint(int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the paint used to outline an item drawn by the renderer.

getSeriesOutlinePaint(int) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the paint used to outline an item drawn by the renderer.

getSeriesOutlineStroke(int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the stroke used to outline the items in a series.

getSeriesOutlineStroke(int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the stroke used to outline the items in a series.

getSeriesOutlineStroke(int) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the stroke used to outline the items in a series.

getSeriesPaint(int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the paint used to fill an item drawn by the renderer.

getSeriesPaint(int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the paint used to fill an item drawn by the renderer.

getSeriesPaint(int) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the paint used to fill an item drawn by the renderer.

getSeriesPositiveItemLabelPosition(int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the item label position for all positive values in a series.

getSeriesPositiveItemLabelPosition(int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the item label position for all positive values in a series.

getSeriesPositiveItemLabelPosition(int) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the item label position for all positive values in a series.

getSeriesRunningTotal() - Method in class org.jfree.chart.renderer.CategoryItemRendererState

Returns the series running total.

getSeriesShape(int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns a shape used to represent the items in a series.

getSeriesShape(int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns a shape used to represent the items in a series.

getSeriesShape(int) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns a shape used to represent the items in a series.

getSeriesShapesFilled(int) - Method in class org.jfree.chart.renderer.LineAndShapeRenderer

Returns the flag used to control whether or not the shapes for a series are filled.

getSeriesShapesFilled(int) - Method in class org.jfree.chart.renderer.StandardXYItemRenderer

Returns the flag used to control whether or not the shapes for a series are filled.

getSeriesShapesFilled(int) - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer

Returns the flag used to control whether or not the shapes for a series are filled.

getSeriesShapesVisible(int) - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer

Returns the flag used to control whether or not the shapes for a series are visible.

getSeriesStroke(int) - Method in class org.jfree.chart.renderer.AbstractRenderer

Returns the stroke used to draw the items in a series.

getSeriesStroke(int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the stroke used to draw the items in a series.

getSeriesStroke(int) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the stroke used to draw the items in a series.

getSeriesToolTipGenerator(int) - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer

Returns the tool tip generator for the specified series (a "layer 1" generator).

getSeriesToolTipGenerator(int) - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer

Returns the tool tip generator for a series.

getSeriesToolTipGenerator(int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the tool tip generator for the specified series (a "layer 1" generator).

getSeriesToolTipGenerator(int) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the tool tip generator for a series.

getSession() - Method in class org.graffiti.editor.GraffitiFrame

Returns the session this frame is opened in.

getSession() - Method in class org.graffiti.editor.GraffitiInternalFrame

Returns the session this frame is opened in.

getSessionFromGraph(Graph) - Method in class org.graffiti.editor.GravistoService

getSessionFromView(View) - Method in class org.graffiti.editor.GravistoService

getSessionManager() - Method in class org.graffiti.editor.MainFrame

DOCUMENT ME!

getSessions() - Static method in class org.graffiti.editor.MainFrame

getSessionsIterator() - Method in class org.graffiti.editor.MainFrame

Returns an iterator over all sessions.

getSessionsIterator() - Method in interface org.graffiti.session.SessionManager

Returns an iterator over all sessions.

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.circle_search.CircleSearchAndLayoutAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping.DataMapping

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.ColorizeAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.DavidTestAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.GrubbsTestAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.ShowStatisticsTab

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.BarabasiAlbertGraphGenerator

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.ErdosRenyiGraphGenerator

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.WattsStrogatzGraphGenerator

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.HammingDistanceAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.inverse_graph.InverseGraphPluginAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.lines_as_substances.LinesToSubstancesAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.NaivePatternFinderAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.ExchangeNodePositionsAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.RatioViewAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.SubstanceRatioCalculationAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.AllPathsSelectionAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.ShortestPathSelectionAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.WeightedShortestPathSelectionAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.MultiDataView

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOManalysis

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMclusterAnalysis

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMclusterAnalysisDoCluster

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMprintDataset

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.commands.TranspathPathwayLoader

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.ImageAssignmentCommand

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.AddDiagramLegendAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.ColorScaleLegendAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.CreateDistanceMatrixAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.ExtractMappingDataAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.RecolorEdgesAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.RemoveMappingDataAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.SetNumericAttributeFromDataAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.alt_id_statistics.AlternativeIDannotationStatistics

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.ApplyAlternativeIdentifiersTo

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.CombineMappingData

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.ClusterHistogramFisherTest

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateDirectChildrenClustersHistogramAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateGOchildrenAverageDataDiagramAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateGOchildrenClustersHistogramAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateGOchildrenTtestHistogramAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.ProcessHierarchynodesDepOnLeafNodes

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.PruneTreeAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.CreateGOtreeAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.InterpreteParentGOtermsAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.kegg_reaction.CreateKeggReactionNetworkAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.hierarchy.HierarchyAlgorithms

Deprecated.

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.hierarchy.HierarchyWizard

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.MergeNodes

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.ReplaceDiagramTitleFromAlternativeSubstanceNames

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectCompoundsAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectEdgesAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectEnzymesAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectGenesAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectMapNodesAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectMapTitleNodesAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectNodesWithExperimentalDataAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectReactionsAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.ShowOrHideImageAttributesAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.SplitNodeForSingleMappingData

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.UserMappingAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.CloseAllWindows

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.EvaluateKGML

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.RecreateView

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.ColorizeSuperGraphAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.CreateOrgSpecificSuperGraphsAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.MergeWindowsAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.SelectWindowsAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.PutIntoSidePanel

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate.RotateAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color.SetBackgroundColorAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color.WindowSettings

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.startlayout.StartLayoutAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph.ApplyGraphLayout

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph.ShowLayoutTab

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.CircleLayouterAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.CircleLayouterWithMinimumCrossingsAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.CountCircularCrossingsAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.DotLayoutAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.NullLayoutAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.connected_components.ConnectedComponentLayout

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.copy_pattern_layout.CopyPatternLayoutAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_no_overlapp.NoOverlappLayoutAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_reduce_space.ExpandReduceLayouterAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fd_edge_routing.ForceDirectedEdgeLayout

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fish_eye.FishEyeLayout

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.graph_to_origin_mover.CenterLayouterAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.graph_to_origin_mover.NoOverlappOfClustersAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement.GridPlacementAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement.IterateGridPlacementLayout

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid.GridLayouterAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.no_overlapp_as_tim.NoOverlappLayoutAlgorithmAS

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache.PatternSpringembedder

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.AddRandomClusterInformationAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BendsLaunchGUI

Deprecated.

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BringToFrontOrBackAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BundleParallelEdges

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ClusterGraphLayout

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ClusterIndividualLayout

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ClusterOverviewNetworkLaunchGui

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.CreateClusterGraphAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.CreateHierarchyTree

Deprecated.

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.DuplicateEdge

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.IntroduceBendsAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.IntroduceParallelEdgeBends

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.IntroduceSelfEdgeBends

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.PajekClusterColor

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.RemoveBendsAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.RemoveParallelEdges

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ResetEdgeSourceOrTarget

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ResizeNodesDepDegreeAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SelectClusterAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SetClusterInfoAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SetClusterInfoFromLabelAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SetClusterInfoFromSubgraphAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SetClusterLaunchGui

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ShowClusterGraphAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SortIntoCluster

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder3d

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.radial_tree.RadialTreeLayout

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.random.RandomLayouterAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.ArrayLayout

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.GridLayoutAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.ResizeFromMappingCountLayoutAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.MultiTreeLayout

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.RTTreeLayout

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.springembedder_1.SpringEmbedderAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.tree_simple.GraphTreeLayout

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.AddInterestingAttributes

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.CalculateAttribute

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.ComputeAttributesAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup.DeleteNodesAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup.NumberNodesAndEdgesAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.HideOrShowChildNodes

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.HierarchyAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.SelectLeafNodesAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ChangeEdgeStyle

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ChangeElementStyle

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ChangeNodeStyle

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ClearSelection

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.CopyDataTableAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ExpandSelectionAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ExportDataTableAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.FindReplaceDialog

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.InvertSelectionAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.RemoveSelectedNodesPreserveEdgesAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchAndSelecAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SetToolTipAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SetURLAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.ChangeLabelsAlgorithm

Deprecated.

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.EnrichHiddenLabelsAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.RemoveHiddenLabelsAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.RemoveParenthesisLabels

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.ReplaceLabelAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.RestoreLabelAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.LinkSelection

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayReferenceAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayReferenceAutoCreationAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.ppt_exporter.PPTAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.printer.PrintAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.AdditionalIdentifiersAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.ReplaceLabelFromAlternativeSubstanceNames

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.scripting.BeanShellDesktopAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.GraphicExport

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PDFAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PDFSVGAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SVGAlgorithm

getSetCategory() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.WebsiteGeneration

getSetCategory() - Method in class org.graffiti.plugin.algorithm.AbstractAlgorithm

getSetCategory() - Method in interface org.graffiti.plugin.algorithm.Algorithm

Returns a set of categories to classify this algorithm .

getSetCategory() - Method in class org.vanted.plugins.layout.multilevelframework.ForceDirectedLayoutWrapper

getSetCategory() - Method in class org.vanted.plugins.layout.multilevelframework.MultilevelFrameworkLayout

getSetCategory() - Method in class org.vanted.plugins.layout.stressminimization.BackgroundExecutionAlgorithm

getSetCategory() - Method in class vanted_feature.SelectAlgorithm

Deprecated.

getSetEC() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.BriteEntry

getSetOfColorSearchTypes() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchType

getSetOfNumericSearchTypes() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchType

getSetOfSearchTypes() - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchType

getSettingFromString(String) - Static method in enum org.LabelFrameSetting

getShadowColor() - Method in class org.graffiti.plugins.attributecomponents.simplelabel.ViewLabel

getShadowOffX() - Method in class org.graffiti.graphics.LabelAttribute

getShadowOffY() - Method in class org.graffiti.graphics.LabelAttribute

getShadowPaint() - Method in class org.jfree.chart.plot.PiePlot

Returns the shadow paint.

getShadowTextColor() - Method in class org.graffiti.graphics.LabelAttribute

getShadowXOffset() - Method in class org.jfree.chart.plot.PiePlot

Returns the x-offset for the shadow effect.

getShadowYOffset() - Method in class org.jfree.chart.plot.PiePlot

Returns the y-offset for the shadow effect.

getShape() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getShape() - Method in class org.graffiti.graphics.GraphElementGraphicAttribute

Returns the 'shape'-value of the encapsulated edge.

getShape() - Method in interface org.graffiti.plugin.view.GraphElementComponentInterface

Returns GraphElementShape object

getShape() - Method in class org.graffiti.plugins.views.defaults.AbstractGraphElementComponent

Returns GraphElementShape object

getShape() - Method in class org.jfree.chart.LegendItem

Returns the shape used to label the series represented by this legend item.

getShape(int, int, double, double, double) - Method in class org.jfree.chart.DefaultShapeFactory

Deprecated.

Returns a Shape that can be used in plotting data.

getShape(int, int, double, double, double) - Method in class org.jfree.chart.SeriesShapeFactory

Deprecated.

Returns a Shape that can be used in plotting data.

getShape(int, int, double, double, double) - Method in interface org.jfree.chart.ShapeFactory

Deprecated.

Returns a Shape that can be used in plotting data.

getShape(int, Object, double, double, double) - Method in class org.jfree.chart.DefaultShapeFactory

Deprecated.

Returns a Shape that can be used in plotting data.

getShape(int, Object, double, double, double) - Method in class org.jfree.chart.SeriesShapeFactory

Deprecated.

Returns a Shape that can be used in plotting data.

getShape(int, Object, double, double, double) - Method in interface org.jfree.chart.ShapeFactory

Deprecated.

Returns a Shape that can be used in plotting data.

getShape(Node) - Static method in class org.AttributeHelper

getShapeClasses() - Static method in class org.AttributeHelper

getShapeClassFromDescription(String) - Static method in class org.AttributeHelper

getShapeClassFromShapeName(String) - Static method in class org.AttributeHelper

getShapeCoords() - Method in class org.jfree.chart.entity.ChartEntity

Returns the shape coordinates as a string.

getShapeDescritions() - Static method in class org.AttributeHelper

getShapeHeight() - Method in class org.jfree.chart.renderer.SignalRenderer

Returns the shape height.

getShapeOutlinePaint() - Method in class org.jfree.chart.StandardLegend

Returns the paint used to outline shapes.

getShapeOutlineStroke() - Method in class org.jfree.chart.StandardLegend

Returns the stroke used to outline shapes.

getShapePaint() - Method in class org.jfree.chart.renderer.StackedXYAreaRenderer

Returns the Paint used for rendering shapes, or null if using series Paints

getShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartAttributePlugin

getShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartAttributePlugin

getShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttributePlugin

getShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundImageAttributePlugin

getShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_color.LabelColorAttributePlugin

getShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings.LabelFontAttributePlugin

getShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style.LabelStyleAttributePlugin

getShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttributePlugin

getShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggAttributePlugin

getShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment.LabelAlignmentAttributePlugin

getShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttributePlugin

getShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttributePlugin

getShapes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.DBEplugin

getShapes() - Method in interface org.graffiti.plugin.EditorPlugin

Returns the array of org.graffiti.plugin.view.GraffitiShapes the plugin contains.

getShapes() - Method in class org.graffiti.plugin.EditorPluginAdapter

Returns the array of org.graffiti.plugin.view.GraffitiShapes the plugin contains.

getShapeScaleX() - Method in class org.jfree.chart.StandardLegend

Returns the x scale factor for shapes displayed in the legend.

getShapeScaleY() - Method in class org.jfree.chart.StandardLegend

Returns the y scale factor for shapes displayed in the legend.

getShapesFilled() - Method in class org.jfree.chart.renderer.LineAndShapeRenderer

Returns the flag that controls whether or not shapes are filled for ALL series.

getShapeStroke() - Method in class org.jfree.chart.renderer.StackedXYAreaRenderer

Returns the Stroke used for rendering shapes, or null if using series Strokes.

getShapesVisible() - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer

Returns the flag that controls whether the shapes are visible for the items in ALL series.

getShapeType() - Method in class org.jfree.chart.entity.ChartEntity

Returns a string describing the entity area.

getShapeWidth() - Method in class org.jfree.chart.renderer.SignalRenderer

Returns the shape width.

getSharedAxisStates() - Method in class org.jfree.chart.plot.PlotState

Returns a map containing the shared axis states.

getShort() - Method in class org.graffiti.attributes.ShortAttribute

Returns the value of this object.

getShort(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getShort(String) - Method in class org.graffiti.attributes.AbstractAttributable

Returns the value of the Attribute at the given path.

getShort(String) - Method in interface org.graffiti.attributes.Attributable

Returns the value of the Attribute at the given path.

getShortDescription() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartComponent

getShortDescription() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.GraffitiCharts

getShortestDistances(HashMap<Node, Integer>, HashSet<Node>, boolean, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getShortestPathElements(Collection<GraphElement>, GraphElement, ListOrderedSet, boolean, boolean, boolean, double, AttributePathNameSearchType, boolean, boolean, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.WeightedShortestPathSelectionAlgorithm

getShortName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping.DataMapping

getShortName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.OrganismEntry

getShortName() - Method in class org.graffiti.plugin.algorithm.AbstractEditorAlgorithm

getShortName() - Method in interface org.graffiti.plugin.algorithm.EditorAlgorithm

getShowAxisLocation() - Method in class org.jfree.chart.plot.JThermometer

Returns the location for the axis.

getShowEmpty() - Method in class org.graffiti.plugin.editcomponent.AbstractValueEditComponent

getShowEmpty() - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor

getShowEmpty() - Method in interface org.graffiti.plugin.editcomponent.ValueEditComponent

Returns true when this component actually does not represent the value of an attribute.

getShowValueLines() - Method in class org.jfree.chart.plot.ThermometerPlot

Returns the flag that controls whether not value lines are displayed.

getSignalColumn() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.TextFileColumnInformation

getSize() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.MyDynamicObjectListModel

getSize() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartment

getSize() - Method in class org.jfree.chart.axis.TickUnit

Returns the size of the tick unit.

getSize() - Method in class org.jfree.chart.needle.MeterNeedle

Returns the size.

getSize(Node) - Static method in class org.AttributeHelper

Gets the size of the Node.

getSize3D(Node, double, boolean) - Static method in class org.AttributeHelper

getSizeD(Node) - Static method in class org.AttributeHelper

Gets the size of the Node.

getSizekb() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader

getSizekb() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface

getSkalar() - Method in class qmwi.kseg.som.diagram.ClassesObject

Insert the method's description here.

getSkipCategoryLabelsToFit() - Method in class org.jfree.chart.axis.CategoryAxis

Deprecated.

No longer supported.

getSliderOptions() - Method in class org.vanted.plugins.layout.stressminimization.parameters.SliderParameter

getSliderValue() - Method in class org.vanted.plugins.layout.stressminimization.StressMinParamModel.MethodRadioGroup

getSliderValue() - Static method in class org.vanted.scaling.ScalingSlider

Get the slider value.

getSliderValue() - Static method in class org.vanted.scaling.Toolbox

getSliderValuePos() - Method in class org.vanted.plugins.layout.stressminimization.StressMinParamModel.MethodRadioGroup

getSlope(Number[], Number[]) - Static method in class org.jfree.data.statistics.Statistics

Finds the slope of a regression line using least squares.

getSnd() - Method in class org.graffiti.plugins.attributecomponents.simplelabel.PointPair

DOCUMENT ME!

getSnd() - Method in class org.graffiti.util.BoolPair

DOCUMENT ME!

getSnd() - Method in class org.graffiti.util.Pair

Returns the second (right) component of the pair.

getSOMcolumnDesc(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint

getSOMdataSet(GraphElement, int, String[], boolean, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.IAPnodeTools

getSOMmap() - Method in class qmwi.kseg.som.DataSet

getSomWidth() - Method in class qmwi.kseg.som.Map

getSortedAverageDataSetValues(SubstanceInterface) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

Get a list of MyComparableDataPoint entries from a xmldata-node.

getSortedAverageDataSetValues(SubstanceInterface, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

getSortedDataSetValues(SubstanceInterface) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

getSortedGraphElements(boolean) - Method in class org.graffiti.plugins.views.defaults.GraffitiView

getSortedLines(NodeList) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools

getSortedNodeHelpers(Collection<Node>, NodeSortCommand, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getSortedNodeHelpersNHL(Collection<NodeHelper>, NodeSortCommand, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getSortValuesIndex(int, int) - Method in class qmwi.kseg.som.diagram.AttributsAll

Insert the method's description here.

getSource() - Method in class org.graffiti.graph.AdjListEdge

Returns the source of the Edge.

getSource() - Method in interface org.graffiti.graph.Edge

Returns the source of the current Edge.

getSource() - Method in class org.graffiti.graphics.DockingAttribute

Returns the 'source'-value of the encapsulated docking.

getSourceEntry() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation

getSourceGraphElementsWithMinimalDistance() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.WeightedDistanceInfo

getSourceGraphNode() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Entry

In case this entry has been created from a Graph node, the souce graph node may be retrieved with this function.

getSourceID() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation

getSourceListIndex01() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.DoubleAndSourceList

getSourceNodes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.DistanceInfo

getSourcePathwayKeggId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Entry

getSpacer() - Method in class org.jfree.chart.title.Title

Returns the spacer which determines the blank space around the edges of the title.

getSpatialDimensions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartment

getSpecies() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getSpecies() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getSpecies() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingId

getSpecies() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MemPlant

getSpecies(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getSpecies(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns a JSBML Species object belonging to a species node

getSpeciesBoundaryCondition(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the boolean value boundaryCondition of the species

getSpeciesCompartment(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the compartment id of a species

getSpeciesConstant(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the boolean value constant of the species

getSpeciesConversionFactor(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the conversion factor units of a species

getSpeciesFromSeriesInformation(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow

getSpeciesHasOnlySubstanceUnits(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the boolean value hasOnlySubstanceUnits of the species

getSpeciesID() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.ReactionIDSpeciesIDWrapper

getSpeciesID(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the id of the species

getSpeciesInitialAmount(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the initial amount of a species

getSpeciesInitialConcentration(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the initial concentration of a species

getSpeciesName(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the name of the species

getSpeciesNode(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper

Returns the species with a distinct id

getSpeciesNode(String, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper

getSpeciesNode(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the species node with a distinct id

getSpeciesNodes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper

Returns all species nodes of the graph

getSpeciesNodes(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns all species nodes of the graph

getSpeciesSubstanceUnits(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the substance units of a species

getSpeicesClones() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper

getSplit(JComponent, JComponent, double, double) - Static method in class info.clearthought.layout.TableLayout

getSplitValue(String, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.IndexAndString

getSplitVertical(Component, Component, double, double) - Static method in class info.clearthought.layout.TableLayout

getSpot() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getSpot() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getStackedRangeExtent(CategoryDataset) - Static method in class org.jfree.data.DatasetUtilities

Returns the minimum and maximum values for the dataset's range (as in domain/range), assuming that the series in one category are stacked.

getStackedRangeExtent(CategoryDataset, KeyToGroupMap) - Static method in class org.jfree.data.DatasetUtilities

Returns the minimum and maximum values for the dataset's range (as in domain/range), assuming that the series in one category are stacked.

getStackedRangeExtent(TableXYDataset) - Static method in class org.jfree.data.DatasetUtilities

Returns the minimum and maximum values for the dataset's range, assuming that the series are stacked.

getStackFrame() - Static method in class org.Java_1_5_compatibility_impl

getStackFrame() - Static method in class org.Java_1_5_compatibility

getStagger() - Method in class org.jfree.chart.renderer.CategoryStepRenderer

Returns the flag that controls whether the series steps are staggered.

getStandard() - Static method in class org.vanted.scaling.ScalingSlider

This determines what our standard DPI is.

getStandardDeviation() - Method in class org.jfree.data.MeanAndStandardDeviation

Returns the standard deviation.

getStandardTickUnits() - Method in class org.jfree.chart.axis.ValueAxis

Returns the source for obtaining standard tick units for the axis.

getStart() - Method in class org.jfree.data.time.RegularTimePeriod

Returns the date/time that marks the start of the time period.

getStart() - Method in class org.jfree.data.time.SimpleTimePeriod

Returns the start date/time.

getStart() - Method in interface org.jfree.data.time.TimePeriod

Returns the start date/time.

getStartAngle() - Method in class org.jfree.chart.plot.PiePlot

Returns the start angle for the first pie section.

getStartBoundary() - Method in class org.jfree.data.statistics.HistogramBin

Returns the start boundary.

getStartdate() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader

getStartdate() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface

getStartDate() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

getStartDate() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface

getStartDateFromLineNode(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

getStartingMethod() - Static method in class qmwi.kseg.som.diagram.Aus

Insert the method's description here.

getStartLogo() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.DBEsplashScreen

getStartPercent() - Method in class org.jfree.chart.renderer.GanttRenderer

Returns the position of the start of the progress indicator, as a percentage of the bar width.

getStartPort() - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.network.BroadCastService

getStartTime() - Method in class org.jfree.chart.axis.SegmentedTimeline

Returns the start time for the timeline.

getStartTime() - Method in class org.vanted.animation.Animation

getStartValue() - Method in class org.jfree.chart.plot.IntervalMarker

Returns the start value for the interval.

getStartValue(int, int) - Method in class org.jfree.data.DefaultIntervalCategoryDataset

Returns the start data value for one category in a series.

getStartValue(int, int) - Method in class org.jfree.data.gantt.TaskSeriesCollection

Returns the start value for a task.

getStartValue(int, int) - Method in interface org.jfree.data.IntervalCategoryDataset

Returns the start value for the interval for a given series and category.

getStartValue(int, int, int) - Method in interface org.jfree.data.gantt.GanttCategoryDataset

Returns the start value of a sub-interval for a given item.

getStartValue(int, int, int) - Method in class org.jfree.data.gantt.TaskSeriesCollection

Returns the start value of a sub-interval for a given item.

getStartValue(Comparable, Comparable) - Method in class org.jfree.data.DefaultIntervalCategoryDataset

Returns the start data value for one category in a series.

getStartValue(Comparable, Comparable) - Method in class org.jfree.data.gantt.TaskSeriesCollection

Returns the start value for a task.

getStartValue(Comparable, Comparable) - Method in interface org.jfree.data.IntervalCategoryDataset

Returns the start value for the interval for a given series and category.

getStartValue(Comparable, Comparable, int) - Method in interface org.jfree.data.gantt.GanttCategoryDataset

Returns the start value of a sub-interval for a given item.

getStartValue(Comparable, Comparable, int) - Method in class org.jfree.data.gantt.TaskSeriesCollection

Returns the start value of a sub-interval for a given item.

getStartX(int, int) - Method in class org.jfree.data.AbstractIntervalXYDataset

Returns the start x-value (as a double primitive) for an item within a series.

getStartX(int, int) - Method in interface org.jfree.data.IntervalXYDataset

Returns the start x-value (as a double primitive) for an item within a series.

getStartXValue(int, int) - Method in class org.jfree.chart.demo.SimpleIntervalXYDataset

Returns the starting X value for the specified series and item.

getStartXValue(int, int) - Method in class org.jfree.chart.demo.SimpleIntervalXYDataset2

Returns the starting X value for the specified series and item.

getStartXValue(int, int) - Method in class org.jfree.data.CategoryTableXYDataset

Returns the starting X value for the specified series and item.

getStartXValue(int, int) - Method in class org.jfree.data.CombinedDataset

Returns the starting X value for the specified series and item.

getStartXValue(int, int) - Method in class org.jfree.data.DefaultTableXYDataset

Returns the starting X value for the specified series and item.

getStartXValue(int, int) - Method in interface org.jfree.data.IntervalXYDataset

Returns the starting X value for the specified series and item.

getStartXValue(int, int) - Method in interface org.jfree.data.IntervalXYZDataset

Returns the starting X value for the specified series and item.

getStartXValue(int, int) - Method in class org.jfree.data.statistics.HistogramDataset

Returns the start value for a bin.

getStartXValue(int, int) - Method in class org.jfree.data.SubSeriesDataset

Returns the starting X value for the specified series and item.

getStartXValue(int, int) - Method in class org.jfree.data.time.DynamicTimeSeriesCollection

Returns the start x-value.

getStartXValue(int, int) - Method in class org.jfree.data.time.TimePeriodValuesCollection

Returns the starting X value for the specified series and item.

getStartXValue(int, int) - Method in class org.jfree.data.time.TimeSeriesCollection

Returns the starting X value for the specified series and item.

getStartXValue(int, int) - Method in class org.jfree.data.time.TimeTableXYDataset

Returns the starting X value for the specified series and item.

getStartXValue(int, int) - Method in class org.jfree.data.XYBarDataset

Returns the starting X value for the specified series and item.

getStartXValue(int, int) - Method in class org.jfree.data.XYSeriesCollection

Returns the starting X value for the specified series and item.

getStartY(int, int) - Method in class org.jfree.data.AbstractIntervalXYDataset

Returns the start y-value (as a double primitive) for an item within a series.

getStartY(int, int) - Method in interface org.jfree.data.IntervalXYDataset

Returns the start y-value (as a double primitive) for an item within a series.

getStartYValue(int, int) - Method in class org.jfree.chart.demo.SimpleIntervalXYDataset

Returns the starting Y value for the specified series and item.

getStartYValue(int, int) - Method in class org.jfree.chart.demo.SimpleIntervalXYDataset2

Returns the starting Y value for the specified series and item.

getStartYValue(int, int) - Method in class org.jfree.data.CategoryTableXYDataset

Returns the starting Y value for the specified series and item.

getStartYValue(int, int) - Method in class org.jfree.data.CombinedDataset

Returns the starting Y value for the specified series and item.

getStartYValue(int, int) - Method in class org.jfree.data.DefaultTableXYDataset

Returns the starting Y value for the specified series and item.

getStartYValue(int, int) - Method in interface org.jfree.data.IntervalXYDataset

Returns the starting Y value for the specified series and item.

getStartYValue(int, int) - Method in interface org.jfree.data.IntervalXYZDataset

Returns the starting Y value for the specified series and item.

getStartYValue(int, int) - Method in class org.jfree.data.statistics.HistogramDataset

Returns the start y-value for a bin (which is the same as the y-value, this method exists only to support the general form of the IntervalXYDataset interface).

getStartYValue(int, int) - Method in class org.jfree.data.SubSeriesDataset

Returns the starting Y value for the specified series and item.

getStartYValue(int, int) - Method in class org.jfree.data.time.DynamicTimeSeriesCollection

Returns the start y-value.

getStartYValue(int, int) - Method in class org.jfree.data.time.TimePeriodValuesCollection

Returns the starting Y value for the specified series and item.

getStartYValue(int, int) - Method in class org.jfree.data.time.TimeSeriesCollection

Returns the starting Y value for the specified series and item.

getStartYValue(int, int) - Method in class org.jfree.data.time.TimeTableXYDataset

Returns the starting Y value for the specified series and item.

getStartYValue(int, int) - Method in class org.jfree.data.XYBarDataset

Returns the starting Y value for the specified series and item.

getStartYValue(int, int) - Method in class org.jfree.data.XYSeriesCollection

Returns the starting Y value for the specified series and item.

getStartZValue(int, int) - Method in interface org.jfree.data.IntervalXYZDataset

Returns the starting Z value for the specified series and item.

getState() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.TristateCheckBox

Return the current state, which is determined by the selection status of the model.

getState() - Method in class org.graffiti.session.GraphConstraintChecker

Returns the state of the constraint checker which contains a message telling which constraints are not satisfied.

getState(String) - Static method in class org.vanted.scaling.Toolbox

Access other than the current states by value.

getStatus() - Method in class org.vanted.plugins.layout.stressminimization.BackgroundAlgorithm

getStatusDescription() - Method in class org.vanted.plugins.layout.stressminimization.BackgroundAlgorithm

getStatusPane(boolean) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.FileDownloadStatusInformationProvider

getStatusPane(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionService

getStatusPane(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggAPIServiceHelper

getStatusPane(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeService

getStatusPane(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathService

getStatusProvider() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskGUIprovider

getStatusProvider() - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskPanelEntry

getStatusProvider() - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskWindow

getStatusTextPhaseDescription(int) - Static method in class org.vanted.plugins.layout.adaptagrams.edgerouting.EdgeRoutingAlgorithm

Get status text (description) for the according phase.

getStatusTextPhaseNumber(int) - Static method in class org.vanted.plugins.layout.adaptagrams.edgerouting.EdgeRoutingAlgorithm

Get status text for the according phase.

getStddev() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverage

getStddev() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverageInterface

getStddev() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint

getStddev() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.SampleEntry

getStddev(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint

getStddev(ArrayList<ReplicateDouble>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentData

getStdDev() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverage

getStdDev() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverageInterface

getStdDev(Number[]) - Static method in class org.jfree.data.statistics.Statistics

Returns the standard deviation of a set of numbers.

getStdDevValue(int, int) - Method in class org.jfree.data.statistics.DefaultStatisticalCategoryDataset

Returns the standard deviation value for an item.

getStdDevValue(int, int) - Method in interface org.jfree.data.statistics.StatisticalCategoryDataset

Returns the standard deviation value for an item.

getStdDevValue(Comparable, Comparable) - Method in class org.jfree.data.statistics.DefaultStatisticalCategoryDataset

Returns the standard deviation value for an item.

getStdDevValue(Comparable, Comparable) - Method in interface org.jfree.data.statistics.StatisticalCategoryDataset

Returns the standard deviation value for an item.

getStoichiometry(Edge) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper

Returns the value of the attribute stoichiometry

getStoichiometry(Edge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper

getStrictValuesFlag() - Method in class org.jfree.chart.axis.LogarithmicAxis

Returns the 'strictValuesFlag' flag; if true and 'allowNegativesFlag' is false then this axis will throw a runtime exception if any of its values are less than or equal to zero; if false then the axis will adjust for values less than or equal to zero as needed.

getString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttribute

getString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttribute

getString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundAttribute

getString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundPositionAttribute

getString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttribute

getString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggGroupPartAttribute

getString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggIdAttribute

getString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionIdAttribute

getString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionTypeAttribute

getString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSrcTgtAttribute

getString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSubTypeAttribute

getString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationTypeAttribute

getString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggTypeAttribute

getString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttribute

getString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttribute

getString() - Method in class org.graffiti.attributes.ObjectAttribute

getString() - Method in class org.graffiti.attributes.StringAttribute

Returns the value of this object.

getString() - Method in class org.graffiti.plugin.parameter.StringParameter

Returns the value of this parameter as an String.

getString(ExperimentInterface) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

getString(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getString(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.Messages

getString(String) - Method in class org.graffiti.attributes.AbstractAttributable

Returns the value of the Attribute at the given path.

getString(String) - Method in interface org.graffiti.attributes.Attributable

Returns the value of the Attribute at the given path.

getString(String) - Method in class org.graffiti.core.GenericBundle

Returns the specified String from the properties, null if there is no such key.

getString(StringBuilder) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getString(StringBuilder) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getString(StringBuilder) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurement

getString(StringBuilder) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurementInterface

getString(StringBuilder) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample

getString(StringBuilder) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverage

getString(StringBuilder) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverageInterface

getString(StringBuilder) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface

getStringForDocument(StringBuilder) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getStringForDocument(StringBuilder) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getStringList(File[], String) - Static method in class org.AttributeHelper

getStringList(String[], String) - Static method in class org.AttributeHelper

getStringList(ArrayList<?>, String) - Static method in class org.AttributeHelper

Deprecated.

Use StringManipulationTools.getStringList(ArrayList,String) instead

getStringList(ArrayList<?>, String) - Static method in class org.StringManipulationTools

getStringList(Collection, String) - Static method in class org.AttributeHelper

getStringOfChildren(StringBuilder) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getStringOfChildren(StringBuilder) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getStringOfChildren(StringBuilder) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

getStringOfChildren(StringBuilder) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MappingDataEntity

getStringOfChildren(StringBuilder) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurement

getStringOfChildren(StringBuilder) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurementInterface

getStringOfChildren(StringBuilder) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample

getStringOfChildren(StringBuilder) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverage

getStringOfChildren(StringBuilder) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverageInterface

getStringOfChildren(StringBuilder) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface

getStringOfChildren(StringBuilder) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getStringOfChildren(StringBuilder) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getStringPrefix(Object) - Static method in class org.ObjectAttributeService

getStringRec() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData

getStringRepresentationFor(Object) - Static method in class org.ObjectAttributeService

getStrings(ExperimentInterface, BackgroundTaskStatusProviderSupportingExternalCall, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

getStroke() - Method in class org.jfree.chart.LegendItem

Returns the stroke used to render the shape for this series.

getStroke() - Method in class org.jfree.chart.plot.Marker

Returns the stroke.

getStroke() - Method in class org.jfree.chart.renderer.HighLow

Returns the Stroke object used to draw the line.

getStrokeWidth() - Method in class org.graffiti.plugins.attributecomponents.simplelabel.ViewLabel

getSubHandlers() - Method in class org.jfree.data.xml.RootHandler

Returns the stack of sub handlers.

getSubIntervalCount(int, int) - Method in interface org.jfree.data.gantt.GanttCategoryDataset

Returns the number of sub-intervals for a given item.

getSubIntervalCount(int, int) - Method in class org.jfree.data.gantt.TaskSeriesCollection

Returns the number of sub-intervals for a given item.

getSubIntervalCount(Comparable, Comparable) - Method in interface org.jfree.data.gantt.GanttCategoryDataset

Returns the number of sub-intervals for a given item.

getSubIntervalCount(Comparable, Comparable) - Method in class org.jfree.data.gantt.TaskSeriesCollection

Returns the number of sub-intervals for a given item.

getSubLabelFont() - Method in class org.jfree.chart.axis.ExtendedCategoryAxis

Returns the font for the sublabels.

getSubLabelFont() - Method in class org.jfree.chart.axis.SubCategoryAxis

Returns the font used to display the sub-category labels.

getSubLabelPaint() - Method in class org.jfree.chart.axis.ExtendedCategoryAxis

Returns the paint for the sublabels.

getSubLabelPaint() - Method in class org.jfree.chart.axis.SubCategoryAxis

Returns the paint used to display the sub-category labels.

getSubmitter() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.SimpleModel

Get names of the authors of the publication

getSubmitter() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionReader

getSubPathWays() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.MyPathWay

getSubPathWays() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.MyPathWay

getSubplotInfo(int) - Method in class org.jfree.chart.plot.PlotRenderingInfo

Returns the info for a subplot.

getSubplots() - Method in class org.jfree.chart.plot.CombinedDomainCategoryPlot

Returns the list of subplots.

getSubplots() - Method in class org.jfree.chart.plot.CombinedDomainXYPlot

Returns the list of subplots.

getSubplots() - Method in class org.jfree.chart.plot.CombinedRangeCategoryPlot

Returns the list of subplots.

getSubplots() - Method in class org.jfree.chart.plot.CombinedRangeXYPlot

Returns the list of subplots.

getSubrangePaint(int) - Method in class org.jfree.chart.plot.ThermometerPlot

Gets the paint used for a particular subrange.

getSubstance() - Method in class de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoaderInstance

getSubstance() - Method in interface de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoaderInterface

getSubstanceColumnInformation(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData

getSubstanceColumnInformation(String, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData

getSubstancegroup() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getSubstancegroup() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getSubstanceNodes(Document) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

getSubstances() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation

getSubstanceString(StringBuilder) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getSubstanceString(StringBuilder) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getSubstanceUnits(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper

Returns the substance units of a species

getSubstId() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.ReactionAndInfo

May return multiple IDs (e.g.

getSubstrateNames() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionEntry

getSubstrates() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Reaction

getSubtask(int) - Method in class org.jfree.data.gantt.Task

Returns a sub-task.

getSubtaskCount() - Method in class org.jfree.data.gantt.Task

Returns the sub-task count.

getSubtitle(int) - Method in class org.jfree.chart.JFreeChart

Returns a chart subtitle.

getSubtitleCount() - Method in class org.jfree.chart.JFreeChart

Returns the number of titles for the chart.

getSubtitles() - Method in class org.jfree.chart.JFreeChart

Returns the list of subtitles.

getSubtypeFromKgmlSubtypeElement(Element, Collection<Entry>, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Subtype

getSubtypeName(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.SubtypeName

getSubtypeRefs() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation

getSubtypes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation

getSum() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getSum() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getSum(ArrayList<Double>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getSummaryInfo(boolean, PluginDescription, GenericPlugin) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_dbe.PluginInfoHelper

getSumOfValues(Document) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

getSuppliedLayoutAlgs() - Static method in class org.vanted.plugins.layout.multilevelframework.LayoutAlgorithmWrapper

Explicitly add other algorithms via symbolic reference

getSuppressChartChangeEvents() - Method in class org.jfree.chart.JFreeChart

Deprecated.

Use isNotify() instead.

getSurroundingItems(int, long) - Method in class org.jfree.data.time.TimeSeriesCollection

Returns the indices of the two data items surrounding a particular millisecond value.

getSymbol() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLInitialAssignment

getSymbolCount() - Method in class org.jfree.chart.axis.SymbolicTickUnit

Returns the number of symbols in this unit.

getSymbolicGridLine(int) - Method in class org.jfree.chart.axis.SymbolicAxis

Get the symbolic grid line corresponding to the specified position.

getSymbolicGridPaint() - Method in class org.jfree.chart.axis.SymbolicAxis

Returns the symbolic grid line color.

getSymbolicValue() - Method in class org.jfree.chart.axis.SymbolicAxis

Returns the list of the symbolic values to display.

getSynonyme(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getSynonyme(int) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getSynonymMap() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getSynonymMap() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getSynonyms() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getSynonyms() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getT() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionDatapoint

getTabbedPane() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics

getTabbedPane() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.WorkflowHelper

Deprecated.

getTabbedPane() - Method in interface org.graffiti.plugin.inspector.ContainsTabbedPane

getTabbedPane() - Method in class org.graffiti.plugin.inspector.SubtabHostTab

getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.JTreeTable.TreeTableCellEditor

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.ClickableHTMLtableCellRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.JTreeTable.TreeTableCellRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.MySpecialValueCellRenderer

getTableData(ExperimentInterface) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataFileWriter

getTableStringData(int, int, int, int, String, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData

getTabNameForAttributeDescription() - Method in class org.graffiti.plugins.inspectors.defaults.AbstractTab

getTabNameForAttributeDescription() - Method in class org.graffiti.plugins.inspectors.defaults.GraphTab

getTabParentPath() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.TabBiomodels

getTabParentPath() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.TabKegg

getTabParentPath() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.RimasTab

getTabParentPath() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.TabMetaCrop

getTabParentPath() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network.TabNetworkAlgorithms

getTabParentPath() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics

getTabParentPath() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPatternLayout

getTabParentPath() - Method in class org.graffiti.plugin.inspector.InspectorTab

returns a path string, that tells Vanted, where to put this tab.

getTabParentPath() - Method in class org.graffiti.plugins.inspectors.defaults.EdgeTab

getTabParentPath() - Method in class org.graffiti.plugins.inspectors.defaults.GraphTab

getTabParentPath() - Method in class org.graffiti.plugins.inspectors.defaults.NodeTab

getTabs() - Method in interface org.graffiti.plugin.inspector.InspectorPlugin

Returns an array containing all the InspectorTabs of the InspectorPlugin.

getTabs() - Method in class org.graffiti.plugin.inspector.SubtabHostTab

getTabs() - Method in class org.graffiti.plugins.inspectors.defaults.Inspector

Returns an array containing all the InspectorTabs of the InspectorPlugin.

getTabs() - Method in class org.graffiti.plugins.inspectors.defaults.InspectorContainer

getTailArrow() - Method in interface org.graffiti.plugin.view.EdgeShape

Returns the shape representing the arrow at the source node.

getTailArrow() - Method in class org.graffiti.plugins.views.defaults.LineEdgeShape

Returns the arrow at the source side.

getTarget() - Method in class org.graffiti.graph.AdjListEdge

Returns the target of the Edge.

getTarget() - Method in interface org.graffiti.graph.Edge

Returns the target of the current Edge.

getTarget() - Method in class org.graffiti.graphics.DockingAttribute

Returns the 'target'-value of the encapsulated docking.

getTargetClusterForNode(int) - Method in class qmwi.kseg.som.Map

getTargetEntry() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation

getTargetGraph() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.UllmannSubraphIsomAdjMatrixState

getTargetID() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation

getTargetPosition() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggPathwayEntry

getTargetSessions() - Method in class org.graffiti.editor.dialog.DefaultParameterDialog

getTargetSessions() - Method in interface org.graffiti.editor.dialog.ParameterDialog

getTargetValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionDatapoint

getTasks() - Method in class org.jfree.data.gantt.TaskSeries

Returns the tasks.

getTemplateFile() - Method in class de.ipk_gatersleben.ag_pbi.datahandling.Template

getTemplateFolderPanel() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TemplateFileManager

getTemplateLoader() - Method in class de.ipk_gatersleben.ag_pbi.datahandling.Template

getTemplates() - Static method in class de.ipk_gatersleben.ag_pbi.datahandling.TemplateManager

getTemporaryFolder() - Static method in class org.HomeFolder

getTemporaryFolderWithFinalSep() - Static method in class org.HomeFolder

getText() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.BSHscriptMenuEntry

getText() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.RubyScriptMenuEntry

getText() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.MessageBox

getText() - Method in class org.graffiti.plugins.attributecomponents.simplelabel.ViewLabel

getText() - Method in class org.jfree.chart.annotations.TextAnnotation

Returns the text for the annotation.

getText() - Method in class org.jfree.chart.axis.Tick

Returns the text version of the tick value.

getText() - Method in class org.jfree.chart.title.TextTitle

Returns the title text.

getTextAnchor() - Method in class org.jfree.chart.annotations.TextAnnotation

Returns the text anchor.

getTextAnchor() - Method in class org.jfree.chart.axis.Tick

Returns the text anchor.

getTextAnchor() - Method in class org.jfree.chart.labels.ItemLabelPosition

Returns the text anchor.

getTextcolor() - Method in class org.graffiti.graphics.LabelAttribute

Returns the 'textcolor'-value of the encapsulated label.

getTextFileContent(File) - Static method in class org.ReleaseInfo

getThermometerPaint() - Method in class org.jfree.chart.plot.ThermometerPlot

Returns the paint used to draw the thermometer outline.

getThermometerStroke() - Method in class org.jfree.chart.plot.ThermometerPlot

Returns the stroke used to draw the thermometer outline.

getThickness() - Method in class org.graffiti.graphics.EdgeGraphicAttribute

Returns the 'thickness'-value of the encapsulated edge.

getTickLabelFont() - Method in class org.jfree.chart.axis.Axis

Returns the font used for the tick labels (if showing).

getTickLabelFont() - Method in class org.jfree.chart.plot.JThermometer

Returns the tick label font.

getTickLabelFont() - Method in class org.jfree.chart.plot.MeterPlot

Returns the tick label font.

getTickLabelFont() - Method in class org.jfree.chart.ui.AxisPropertyEditPanel

Returns the font used to draw the tick labels (if they are showing).

getTickLabelFormat() - Method in class org.jfree.chart.plot.MeterPlot

Returns the tick label format.

getTickLabelInsets() - Method in class org.jfree.chart.axis.Axis

Returns the insets for the tick labels.

getTickLabelInsets() - Method in class org.jfree.chart.ui.AxisPropertyEditPanel

Returns the current tick label insets value

getTickLabelPaint() - Method in class org.jfree.chart.axis.Axis

Returns the color/shade used for the tick labels.

getTickLabelPaint() - Method in class org.jfree.chart.ui.AxisPropertyEditPanel

Returns the current tick label paint.

getTickLabelType() - Method in class org.jfree.chart.plot.MeterPlot

Returns the tick label type.

getTickMarkInsideLength() - Method in class org.jfree.chart.axis.Axis

Returns the inside length of the tick marks.

getTickMarkOutsideLength() - Method in class org.jfree.chart.axis.Axis

Returns the outside length of the tick marks.

getTickMarkPaint() - Method in class org.jfree.chart.axis.Axis

Returns the paint used to draw tick marks (if they are showing).

getTickMarkPosition() - Method in class org.jfree.chart.axis.DateAxis

Returns the tick mark position (start, middle or end of the time period).

getTickMarkStroke() - Method in class org.jfree.chart.axis.Axis

Returns the pen/brush used to draw tick marks (if they are showing).

getTicks() - Method in class org.jfree.chart.axis.AxisState

Returns the list of ticks.

getTickSize() - Method in class org.jfree.chart.renderer.HighLow

Returns the width of the open/close tick.

getTickUnit() - Method in class org.jfree.chart.axis.DateAxis

Returns the tick unit for the axis.

getTickUnit() - Method in class org.jfree.chart.axis.NumberAxis

Returns the tick unit for the axis.

getTickValues() - Method in class org.jfree.chart.ui.ColorPalette

Returns the tick values.

getTiled() - Method in class org.graffiti.graphics.ImageAttribute

Returns the 'tiled'-value of the encapsulated image.

getTime() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MemSample

getTime() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample

getTime() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface

getTime() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DataColumnHeader

getTime() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.SampleEntry

getTime() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TimeAndPlantName

getTime() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.TimeAndTimeUnit

getTime() - Method in class org.jfree.data.time.FixedMillisecond

Returns the date/time.

getTime() - Method in class org.vanted.animation.data.TimePoint

getTime(Date) - Method in class org.jfree.chart.axis.SegmentedTimeline

Special method that handles conversion between the Default Time Zone and a UTC time zone with no DST.

getTimeCountForSubstanceNode(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

getTimeElapsed() - Method in class org.vanted.animation.AnimatorData

getTimeFromLong(long) - Method in class org.jfree.chart.axis.SegmentedTimeline

Converts a date/time value to take account of daylight savings time.

getTimeID() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DataRowExcelExport

getTimeline() - Method in class org.jfree.chart.axis.DateAxis

Returns the underlying timeline used by this axis.

getTimePeriod(int) - Method in class org.jfree.data.time.TimePeriodValues

Returns the time period at the specified index.

getTimePeriod(int) - Method in class org.jfree.data.time.TimeSeries

Returns the time period at the specified index.

getTimePeriodClass() - Method in class org.jfree.data.time.TimeSeries

Returns the time period class for this series.

getTimePeriods() - Method in class org.jfree.data.time.TimeSeries

Returns a collection of all the time periods in the time series.

getTimePeriodsUniqueToOtherSeries(TimeSeries) - Method in class org.jfree.data.time.TimeSeries

Returns a collection of time periods in the specified series, but not in this series, and therefore unique to the specified series.

getTimePoint() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingId

getTimePointFromTimeAndUnit(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint

getTimes(ExperimentInterface) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

getTimes(Set<Integer>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getTimes(Set<Integer>) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getTimes(Document) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper

Get the possible time values that are stored in an experiment.

getTimeSeriesInstance() - Static method in class org.jfree.chart.labels.StandardXYToolTipGenerator

Returns a tool tip generator that formats the x-values as dates and the y-values as numbers.

getTimeSinceStartOfLoop(int, double, double, double) - Method in class org.vanted.animation.loopers.Looper

Calculates the time since the start of the loop

getTimeSinceStartOfLoop(int, double, double, double) - Method in class org.vanted.animation.loopers.SwingLooper

getTimeUnit() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingId

getTimeUnit() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MemSample

getTimeUnit() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample

getTimeUnit() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface

getTimeUnit() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DataRowExcelExport

getTimeUnit() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.SampleEntry

getTimeUnit() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.TimeAndTimeUnit

getTimeUnitFromTimeAndUnit(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint

getTipRadius() - Method in class org.jfree.chart.annotations.XYPointerAnnotation

Returns the tip radius.

getTitle() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.TabBiomodels

getTitle() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.Annotation

getTitle() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.AnnotationProvider

getTitle() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkTab

getTitle() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.RimasTab

getTitle() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network.TabNetworkAlgorithms

getTitle() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings.PreferencesDialog

getTitle() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway

getTitle() - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.RunAlgorithmDialog

getTitle() - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskWindow

getTitle() - Method in class org.FolderPanel

getTitle() - Method in class org.graffiti.editor.GraffitiInternalFrame

getTitle() - Method in class org.graffiti.plugin.inspector.InspectorTab

Returns the title of the current InspectorTab.

getTitle() - Method in class org.graffiti.plugins.inspectors.defaults.InspectorContainer

getTitle() - Method in class org.jfree.chart.event.TitleChangeEvent

Returns the title that generated the event.

getTitle() - Method in class org.jfree.chart.JFreeChart

Returns the chart title.

getTitle() - Method in class org.jfree.chart.StandardLegend

Gets the title for the legend.

getTitle() - Method in class org.jfree.chart.ui.TitlePropertyEditPanel

Returns the title entered in the panel.

getTitleFont() - Method in class org.jfree.chart.StandardLegend

Returns the title font.

getTitleFont() - Method in class org.jfree.chart.ui.TitlePropertyEditPanel

Returns the font selected in the panel.

getTitlePaint() - Method in class org.jfree.chart.ui.TitlePropertyEditPanel

Returns the paint selected in the panel.

getTitlePropertyEditPanel() - Method in class org.jfree.chart.ui.ChartPropertyEditPanel

Deprecated.

returns null, until the title panel is implemented properly.

getToBeDeletedPathFromAttributePath(String) - Static method in class org.AttributeHelper

getTool() - Method in interface org.graffiti.plugin.gui.GraffitiToolComponent

Returns the tool this button is identified with.

getTool() - Method in class org.graffiti.plugin.gui.ToolButton

Returns the tool this button is identified with.

getToolName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.IPK_MegaCreateTool

getToolName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.IPK_MegaMoveTool

getToolName() - Method in interface org.graffiti.plugin.tool.Tool

getToolName() - Method in class org.graffiti.plugins.modes.defaults.AdvancedLabelTool

getToolName() - Method in class org.graffiti.plugins.modes.defaults.LabelTool

getToolName() - Method in class org.graffiti.plugins.modes.defaults.MegaCreateTool

getToolName() - Method in class org.graffiti.plugins.modes.defaults.MegaMoveTool

getTools() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartAttributePlugin

getTools() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartAttributePlugin

getTools() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttributePlugin

getTools() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundImageAttributePlugin

getTools() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_color.LabelColorAttributePlugin

getTools() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings.LabelFontAttributePlugin

getTools() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style.LabelStyleAttributePlugin

getTools() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttributePlugin

getTools() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggAttributePlugin

getTools() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment.LabelAlignmentAttributePlugin

getTools() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttributePlugin

getTools() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttributePlugin

getTools() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.DBEplugin

getTools() - Method in interface org.graffiti.plugin.EditorPlugin

Returns an array of org.graffiti.plugin.mode.Tools the plugin provides.

getTools() - Method in class org.graffiti.plugin.EditorPluginAdapter

Returns an array of org.graffiti.plugin.mode.Tools the plugin provides.

getTools() - Method in class org.graffiti.plugin.gui.ModeToolbar

Returns the tools that are represented by buttons in this toolbar.

getTools() - Method in class org.graffiti.plugin.mode.AbstractMode

Returns an array containing all the tools belonging Mode.

getTools() - Method in interface org.graffiti.plugin.mode.Mode

Returns an array containing all the tools belonging Mode.

getTooltip() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getToolTipCount(int) - Method in class org.jfree.chart.labels.CustomXYToolTipGenerator

Returns the number of tool tips in a given list.

getTooltipForNode(Node, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKnodeComponent

getToolTipGenerator() - Method in class org.jfree.chart.plot.ContourPlot

Returns the tool tip generator.

getToolTipGenerator() - Method in class org.jfree.chart.plot.PiePlot

Returns the tool tip generator, an object that is responsible for generating the text items used for tool tips by the plot.

getToolTipGenerator() - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer

Returns the tool tip generator that will be used for ALL items in the dataset (the "layer 0" generator).

getToolTipGenerator() - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the tool tip generator that will be used for ALL items in the dataset (the "layer 0" generator).

getToolTipGenerator(int, int) - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer

Returns the tool tip generator that should be used for the specified item.

getToolTipGenerator(int, int) - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer

Returns the tool tip generator for a data item.

getToolTipGenerator(int, int) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer

Returns the tool tip generator that should be used for the specified item.

getToolTipGenerator(int, int) - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the tool tip generator for a data item.

getToolTipText() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKnodeComponent

getToolTipText() - Method in class org.graffiti.plugins.views.defaults.EdgeComponent

getToolTipText() - Method in class org.graffiti.plugins.views.defaults.NodeComponent

getToolTipText() - Method in class org.jfree.chart.entity.ChartEntity

Returns the tool tip text for the entity.

getToolTipText(int, int) - Method in class org.jfree.chart.labels.CustomXYToolTipGenerator

Returns the tool tip text for an item.

getToolTipText(MouseEvent) - Method in class org.jfree.chart.ChartPanel

Returns a string for the tooltip.

getToolTipText(Attributable) - Static method in class org.AttributeHelper

getTop() - Method in class org.jfree.chart.axis.AxisSpace

Returns the top space.

getTopCategoryLabelPosition() - Method in class org.jfree.chart.axis.CategoryAxis

Deprecated.

Use getCategoryLabelPositions().getLabelPosition(RectangleEdge.TOP).

getTopLevel() - Method in class org.vanted.plugins.layout.multilevelframework.MultilevelGraph

Get the topmost (i.e.

getTotal() - Method in class org.jfree.chart.plot.PiePlotState

Returns the total of the values in the dataset.

getTotalFormatter() - Method in class org.jfree.chart.demo.ExtendedStackedBarRenderer

Returns the total formatter.

getTotalNumberOfNodes() - Method in class org.vanted.plugins.layout.multilevelframework.MultilevelGraph

getTrainedWithReturnNaN() - Method in class qmwi.kseg.som.DataSet

getTransferData(DataFlavor) - Method in class net.iharder.dnd.TransferableObject

Returns the data encapsulated in this TransferableObject.

getTransferDataFlavors() - Method in class net.iharder.dnd.TransferableObject

Returns a two- or three-element array containing first the custom data flavor, if one was created in the constructors, second the default TransferableObject.DATA_FLAVOR associated with TransferableObject, and third the java.awt.datatransfer.DataFlavor.stringFlavor.

getTransform() - Method in class org.jfree.chart.needle.MeterNeedle

Returns the transform.

getTranslate() - Method in class org.jfree.chart.demo.SampleXYDataset

Returns the translation factor.

getTranspathPathwaySelectionFromUser(Collection<TranspathPathway>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.commands.TranspathPathwayLoader

getTranspose() - Method in class org.jfree.data.JDBCCategoryDataset

Returns a flag that controls whether or not the table values are transposed when added to the dataset.

getTransposedDataset() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData

getTreatementFromSeriesInformation(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow

getTreatment() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getTreatment() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getTreatment() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MemPlant

getTree() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.JTreeTable

getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.CheckTreeCellRenderer

getTreeMap() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.TreeContainer

getTrigger() - Method in class org.jfree.chart.ChartMouseEvent

Returns the mouse event that triggered this event.

getTriggerFunction() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper

getTtestInfo() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample

getTtestInfo() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface

getTTestIsH1(int, int) - Method in class org.BioStatisticalCategoryDataset

Returns the true, if this is the reference sample or if no calculation is done.

getTTestIsRef(int, int) - Method in class org.BioStatisticalCategoryDataset

Returns the true, if this is the reference sample or if no calculation is done.

getTtestMarkCircleSize() - Method in class org.BioStatisticalCategoryDataset

getTTestShape(float, float, float, float) - Static method in class org.jfree.chart.renderer.StatisticalBarRenderer

getTwoSided() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.exact_fisher_test.FisherProbability

getTwoSidedD() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.exact_fisher_test.FisherProbability

getType() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Entry

getType() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Reaction

getType() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation

getType() - Method in class org.jfree.chart.event.ChartChangeEvent

Returns the event type.

getType() - Method in class org.jfree.chart.event.ChartProgressEvent

Returns the event type.

getType() - Method in class org.jfree.data.statistics.HistogramDataset

Returns the histogram type.

getType(int, int) - Method in class org.jfree.chart.demo.SampleSignalDataset

Returns the type.

getType(int, int) - Method in interface org.jfree.data.SignalsDataset

Returns the type.

getType(int, int) - Method in class org.jfree.data.SubSeriesDataset

Returns the type.

getType(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.FeedDownloadType

getTypedAttribute(String, boolean) - Static method in class org.graffiti.attributes.AbstractAttribute

getTypeDescription(boolean) - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.RelationType

getTypeDescription(boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation

getTypedStringAttribute(String) - Static method in class org.graffiti.attributes.StringAttribute

getTypedStringAttribute(String, String) - Static method in class org.graffiti.attributes.StringAttribute

getTypeManager() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

getUndirectedEdges() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getUndirectedEdges() - Method in class org.graffiti.graph.AbstractNode

Returns a collection containing the undirected edges of the Node.

getUndirectedEdges() - Method in interface org.graffiti.graph.Node

Returns a collection containing the undirected ingoing and outgoing edges of the Node.

getUndirectedEdgesIterator() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getUndirectedEdgesIterator() - Method in class org.graffiti.graph.AdjListNode

Returns an iterator containing the undirected ingoing and outgoing edges of the Node.

getUndirectedEdgesIterator() - Method in interface org.graffiti.graph.Node

Returns an iterator containing all undirected edges of the Node.

getUndirectedNeighbors() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getUndirectedNeighbors() - Method in class org.graffiti.graph.AbstractNode

Returns a collection containing all the neighbors which are connected to the current Node by an undirected Edge.

getUndirectedNeighbors() - Method in interface org.graffiti.graph.Node

Returns a collection containing all the neighbors which are connected to the current Node by an undirected Edge.

getUndirectedNeighborsIterator() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getUndirectedNeighborsIterator() - Method in class org.graffiti.graph.AbstractNode

getUndirectedNeighborsIterator() - Method in interface org.graffiti.graph.Node

getUndoManager() - Method in class org.graffiti.session.EditorSession

Returns the undoManager for this session.

getUndoPresentationName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.KeggNavigationToolbarCommand

getUndoPresentationName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.zoomfit.AlignNodesCommand

getUndoPresentationName() - Method in class org.graffiti.plugin.algorithm.AbstractAlgorithm

getUndoSupport() - Method in class org.graffiti.editor.MainFrame

Returns the class for undoSupport.

getUnicodeStringCellData(int, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData

Converts cell data to unicode strings.

getUniqueValueCount() - Method in class org.jfree.data.WaferMapDataset

Returns the number of unique values.

getUniqueValues() - Method in class org.jfree.data.WaferMapDataset

Returns the set of unique values.

getUnit() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurement

getUnit() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurementInterface

getUnit() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverage

getUnit() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverageInterface

getUnit() - Method in class org.jfree.chart.axis.DateTickUnit

Returns the date unit.

getUnitDefinitionHeadlines(Graph) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLUnitDefinitionHelper

getUnits() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartment

getUnits() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLParameter

getUnits() - Method in class org.jfree.chart.plot.MeterPlot

Returns the units for the dial.

getUnits() - Method in class org.jfree.chart.plot.ThermometerPlot

Returns the unit display type (none/Fahrenheit/Celcius/Kelvin).

getUnits() - Method in class org.jfree.data.DefaultMeterDataset

Deprecated.

Returns the measurement units for the data.

getUnits() - Method in interface org.jfree.data.MeterDataset

Deprecated.

Returns a string representing the units on the dial.

getUnits(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter

getUnwrittenAttributes() - Method in class org.graffiti.attributes.AttributeManager

getUpArrow() - Method in class org.jfree.chart.axis.ValueAxis

Returns a shape that can be displayed as an arrow pointing upwards at the end of an axis line.

getUpdatedParameters() - Method in class org.graffiti.editor.dialog.ParameterEditPanel

Returns the array of parameters with the values updated from the dialog.

getUpdatedParameters() - Method in class org.vanted.plugins.layout.multilevelframework.MLFParamModel.MergerGroup

getUpdatedParameters() - Method in class org.vanted.plugins.layout.multilevelframework.MLFParamModel.PlacerGroup

getUpPaint() - Method in class org.jfree.chart.renderer.CandlestickRenderer

Returns the paint used to fill candles when the price moves up from open to close.

getUpperBound() - Method in class org.jfree.chart.axis.ValueAxis

Returns the upper bound for the axis range.

getUpperBound() - Method in class org.jfree.chart.plot.ThermometerPlot

Returns the upper bound for the thermometer.

getUpperBound() - Method in class org.jfree.data.Range

Returns the upper bound for the range.

getUpperClip() - Method in class org.jfree.chart.renderer.BarRenderer

Returns the upper clip value.

getUpperDate() - Method in class org.jfree.data.DateRange

Returns the upper (later) date for the range.

getUpperMargin() - Method in class org.jfree.chart.axis.CategoryAxis

Returns the upper margin for the axis.

getUpperMargin() - Method in class org.jfree.chart.axis.ValueAxis

Returns the upper margin for the axis, expressed as a percentage of the axis range.

getUpperY() - Method in class org.jfree.chart.plot.PieLabelRecord

Returns the upper bound of the label.

getURIfromURL(URL) - Static method in class org.Java_1_5_compatibility_impl

getURIfromURL(URL) - Static method in class org.Java_1_5_compatibility

getUrl() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_editing.DBGETresult

getUrl(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.Url

getURL() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getURL() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TemplateFile

getURL() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkItem

getURL() - Method in class org.graffiti.managers.pluginmgr.RSSfeedDefinition

getURL() - Method in class org.vanted.updater.HttpHttpsURL

This returns the URL's spec.

getURL(int, int) - Method in class org.jfree.chart.urls.CustomXYURLGenerator

Returns the URL for an item.

getURL(File) - Static method in class org.graffiti.plugin.io.resources.FileSystemHandler

getURL(Comparable, int) - Method in class org.jfree.chart.urls.CustomPieURLGenerator

Returns the URL for an item.

getURL(String) - Static method in class org.graffiti.plugin.io.resources.FTPhandler

getURL(String) - Static method in class org.graffiti.plugin.io.resources.HTTPhandler

getURL(String) - Static method in class org.graffiti.plugin.io.resources.HTTPShandler

getURLattributeActions() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttributePlugin

getURLattributeActions() - Method in interface org.graffiti.plugin.GenericPlugin

getURLattributeActions() - Method in class org.graffiti.plugin.GenericPluginAdapter

getURLCount(int) - Method in class org.jfree.chart.urls.CustomPieURLGenerator

Returns the number of URLs in a given list.

getURLCount(int) - Method in class org.jfree.chart.urls.CustomXYURLGenerator

Returns the number of URLs in a given list.

getURLfromJarfile(File) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.Addon

getURLGenerator() - Method in class org.jfree.chart.plot.ContourPlot

Returns the URL generator for HTML image maps.

getURLGenerator() - Method in class org.jfree.chart.plot.PiePlot

Returns the URL generator.

getURLGenerator() - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer

Returns the URL generator for HTML image maps.

getURLGenerator() - Method in interface org.jfree.chart.renderer.XYItemRenderer

Returns the URL generator for HTML image maps.

getURLGenerator(int, int) - Method in class org.jfree.chart.renderer.CategoryURLGeneratorTable

Deprecated.

Returns the URL generator object from a particular cell in the table.

getUrls() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.RSSFeedManager

getURLText() - Method in class org.jfree.chart.entity.ChartEntity

Returns the URL text for the entity.

getUseAntialiasingSetting() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKGraffitiView

getUsedMemoryInMB() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.threading.SystemAnalysis

getUseDropShadow() - Method in class org.graffiti.graphics.LabelAttribute

getUseFillPaintForShapeOutline() - Method in class org.jfree.chart.renderer.LineAndShapeRenderer

Returns the flag that controls whether the fill paint is used for shape outlines.

getUseGradient() - Method in class org.graffiti.graphics.GraphElementGraphicAttribute

getUseOutlinePaint() - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer

Returns true if the renderer should use the outline paint setting to draw shape outlines, and false if it should just use the regular paint.

getUser_description() - Method in class org.graffiti.attributes.AttributeDescription

getUserData() - Method in class qmwi.kseg.som.CSV_SOM_dataEntry

getUserData() - Method in interface qmwi.kseg.som.SOMdataEntry

getUserName() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.threading.SystemAnalysis

getUserSelection() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.FileHandlerUserDecision

getUserSelectionCreateInternalFrame() - Method in class org.graffiti.editor.ViewTypeChooser

getUserSelectionFrom(String, List<IdAndGraphNode>, ArrayList<IdAndGraphNode>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.UserMappingAlgorithm

getUseSubrangePaint() - Method in class org.jfree.chart.plot.ThermometerPlot

Returns a flag that controls whether or not the mercury color changes for each subrange.

getUseValuesFromTriggerTime() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper

getValidInputFileExtension() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentLoader

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttribute

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttribute

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundAttribute

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundPositionAttribute

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttribute

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggGroupPartAttribute

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggIdAttribute

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionIdAttribute

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionTypeAttribute

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSrcTgtAttribute

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSubTypeAttribute

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationTypeAttribute

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggTypeAttribute

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment.LabelAlignmentAttribute

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttribute

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttribute

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.MyEntry

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.SetAbleBoolean

getValue() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Measurement

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MemSample

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurement

getValue() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurementInterface

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverage

getValue() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverageInterface

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.Tie

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.ClusterSplashScreen

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.DBEsplashScreen

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.Id

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.kgmlNumber

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.IndexAndString

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Subtype

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLParameter

getValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ValueAndGraphElement

getValue() - Method in class org.graffiti.attributes.AbstractCollectionAttribute

Returns the value of this attribute, i.e.

getValue() - Method in interface org.graffiti.attributes.Attribute

Returns the value of this Attribute.

getValue() - Method in class org.graffiti.attributes.BooleanAttribute

Returns the value of the attribute wrapped in an Boolean object.

getValue() - Method in class org.graffiti.attributes.ByteAttribute

Returns the value of the attribute wrapped in an Byte object..

getValue() - Method in class org.graffiti.attributes.DoubleAttribute

Returns the value of the attribute.

getValue() - Method in class org.graffiti.attributes.FloatAttribute

Returns the value of the attribute wrapped in an Float object.

getValue() - Method in class org.graffiti.attributes.IntegerAttribute

Returns the value of the attribute wrapped in an Integer object.

getValue() - Method in class org.graffiti.attributes.LongAttribute

Returns the value of the attribute wrapped in an Long object.

getValue() - Method in class org.graffiti.attributes.ObjectAttribute

getValue() - Method in class org.graffiti.attributes.ShortAttribute

Returns the value of the attribute wrapped in an Short object.

getValue() - Method in class org.graffiti.attributes.StringAttribute

Returns the value of this attribute, i.e.

getValue() - Method in class org.graffiti.editor.SplashScreen

getValue() - Method in interface org.graffiti.editor.SplashScreenInterface

getValue() - Method in class org.graffiti.graphics.AWTImageAttribute

Returns the value of this attribute.

getValue() - Method in class org.graffiti.graphics.LineModeAttribute

Returns a dash object contained in this attribute.

getValue() - Method in interface org.graffiti.plugin.Displayable

Returns the encapsulated object.

getValue() - Method in class org.graffiti.plugin.parameter.AbstractSingleParameter

getValue() - Method in class org.graffiti.plugin.parameter.BooleanParameter

Returns the value of this parameter.

getValue() - Method in class org.graffiti.plugin.parameter.ColorParameter

Returns the value of this parameter.

getValue() - Method in class org.graffiti.plugin.parameter.DoubleParameter

Returns the value of this parameter.

getValue() - Method in class org.graffiti.plugin.parameter.EdgeParameter

Returns the value of this parameter.

getValue() - Method in class org.graffiti.plugin.parameter.EnumParameter

getValue() - Method in class org.graffiti.plugin.parameter.FloatParameter

Returns the value of this parameter.

getValue() - Method in class org.graffiti.plugin.parameter.IntegerParameter

Returns the value of this parameter.

getValue() - Method in class org.graffiti.plugin.parameter.JComponentParameter

getValue() - Method in class org.graffiti.plugin.parameter.NodeParameter

Returns the value of this parameter.

getValue() - Method in class org.graffiti.plugin.parameter.ObjectParameter

getValue() - Method in class org.graffiti.plugin.parameter.SelectionParameter

Returns the value of this parameter.

getValue() - Method in class org.graffiti.plugin.parameter.StringParameter

Returns the value of this parameter.

getValue() - Method in interface org.graffiti.util.ProgressViewer

Returns the progress viewer's current value.

getValue() - Method in class org.jfree.chart.annotations.CategoryTextAnnotation

Returns the value that the annotation attaches to.

getValue() - Method in class org.jfree.chart.axis.ValueTick

Returns the value.

getValue() - Method in class org.jfree.chart.plot.JThermometer

Returns the value of the thermometer.

getValue() - Method in class org.jfree.chart.plot.ValueMarker

Returns the value.

getValue() - Method in class org.jfree.data.DefaultKeyedValue

Returns the value.

getValue() - Method in class org.jfree.data.DefaultKeyedValueDataset

Returns the value.

getValue() - Method in class org.jfree.data.DefaultMeterDataset

Deprecated.

Returns the value.

getValue() - Method in class org.jfree.data.DefaultValueDataset

Returns the value.

getValue() - Method in class org.jfree.data.time.TimePeriodValue

Returns the value.

getValue() - Method in class org.jfree.data.time.TimeSeriesDataItem

Returns the value.

getValue() - Method in interface org.jfree.data.Value

Returns the value.

getValue() - Method in class org.jfree.data.xml.ItemHandler

Returns the key that has been read by the handler, or null.

getValue() - Method in enum org.vanted.animation.LoopDuration

getValue() - Method in enum org.vanted.animation.NumberOfLoops

getValue() - Method in class org.vanted.indexednodes.IndexAttribute

getValue() - Method in class org.vanted.plugins.layout.stressminimization.StressMinParamModel.TerminationStressChangeGroup

getValue(double) - Method in interface org.jfree.data.Function2D

Returns the value of the function ('y') for a given input ('x').

getValue(double) - Method in class org.jfree.data.LineFunction2D

Returns the function value.

getValue(double) - Method in class org.jfree.data.NormalDistributionFunction2D

Returns the function value.

getValue(double) - Method in class org.jfree.data.PowerFunction2D

Returns the value of the function for a given input ('x').

getValue(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DataRowExcelExport

getValue(int) - Method in class org.jfree.chart.demo.Performance

Repeatedly grabs a value from a double.

getValue(int) - Method in class org.jfree.chart.renderer.HighLow

Returns either OPEN or CLOSE value depending on the valueType.

getValue(int) - Method in class org.jfree.data.CategoryToPieDataset

Returns a value.

getValue(int) - Method in class org.jfree.data.DefaultKeyedValues

Returns a value.

getValue(int) - Method in class org.jfree.data.DefaultPieDataset

Returns a value.

getValue(int) - Method in class org.jfree.data.time.TimePeriodValues

Returns the value at the specified index.

getValue(int) - Method in class org.jfree.data.time.TimeSeries

Returns the value at the specified index.

getValue(int) - Method in interface org.jfree.data.Values

Returns a value.

getValue(int, int) - Method in class org.jfree.data.DefaultCategoryDataset

Returns a value from the table.

getValue(int, int) - Method in class org.jfree.data.DefaultIntervalCategoryDataset

Returns the data value for one category in a series.

getValue(int, int) - Method in class org.jfree.data.DefaultKeyedValues2D

Returns the value for a given row and column.

getValue(int, int) - Method in class org.jfree.data.gantt.TaskSeriesCollection

/** Returns the value for a task.

getValue(int, int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the value for an item.

getValue(int, int) - Method in class org.jfree.data.statistics.DefaultStatisticalCategoryDataset

Returns the value for an item.

getValue(int, int) - Method in interface org.jfree.data.Values2D

Returns a value from the table.

getValue(SubtypeName) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.SubtypeValue

getValue(Comparable) - Method in class org.jfree.data.CategoryToPieDataset

Returns the value for a given key.

getValue(Comparable) - Method in class org.jfree.data.DefaultKeyedValues

Returns the value (possibly null) for a given key.

getValue(Comparable) - Method in class org.jfree.data.DefaultPieDataset

Returns the data value associated with a key.

getValue(Comparable) - Method in interface org.jfree.data.KeyedValues

Returns the value (possibly null) for a given key.

getValue(Comparable, Comparable) - Method in class org.jfree.data.DefaultCategoryDataset

Returns the value for a pair of keys.

getValue(Comparable, Comparable) - Method in class org.jfree.data.DefaultIntervalCategoryDataset

Returns the data value for one category in a series.

getValue(Comparable, Comparable) - Method in class org.jfree.data.DefaultKeyedValues2D

Returns the value for the given row and column keys.

getValue(Comparable, Comparable) - Method in class org.jfree.data.gantt.TaskSeriesCollection

Returns the value for an item.

getValue(Comparable, Comparable) - Method in interface org.jfree.data.KeyedValues2D

Returns the value for a pair of keys.

getValue(Comparable, Comparable) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the value for an item.

getValue(Comparable, Comparable) - Method in class org.jfree.data.statistics.DefaultStatisticalCategoryDataset

Returns the value for an item.

getValue(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.AddDiagramLegendAlgorithm

getValue(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter

getValue(RegularTimePeriod) - Method in class org.jfree.data.time.TimeSeries

Returns the value for a time period.

getValueAt(int, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.AddonTableModel

getValueAt(int, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.XlsTableModel

getValueAt(int, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.TreeTableModelAdapter

getValueAt(int, int) - Method in class org.graffiti.plugins.views.matrix.MatrixModel

getValueAt(int, int) - Method in class org.jfree.data.TimeSeriesTableModel

Returns the data value for a cell in the table model.

getValueAt(int, int) - Method in class org.jfree.data.XYDatasetTableModel

Returns a value of the specified cell.

getValueAt(int, int) - Method in class qmwi.kseg.som.diagram.DiagrammPaneData

getValueAt method comment.

getValueAt(int, int) - Method in class qmwi.kseg.som.diagram.TableDataTest

getValueAt method comment.

getValueAt(Object, int) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.TreeTableModel

Returns the value to be displayed for node node, at column number column.

getValueCount(int) - Method in class qmwi.kseg.som.diagram.AttributsAttribut

Insert the method's description here.

getValueEditComponent(Displayable) - Method in class org.graffiti.managers.EditComponentManager

Returns an instance of the ValueEditComponent that is capable of providing a possibility to alter the value of the displayable with type aType.

getValueEditComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartAttributePlugin

getValueEditComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartAttributePlugin

getValueEditComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttributePlugin

getValueEditComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundImageAttributePlugin

getValueEditComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_color.LabelColorAttributePlugin

getValueEditComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings.LabelFontAttributePlugin

getValueEditComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style.LabelStyleAttributePlugin

getValueEditComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttributePlugin

getValueEditComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggAttributePlugin

getValueEditComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment.LabelAlignmentAttributePlugin

getValueEditComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttributePlugin

getValueEditComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttributePlugin

getValueEditComponents() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.DBEplugin

getValueEditComponents() - Method in class org.graffiti.editor.dialog.AbstractValueEditContainer

Returns a list containing all the ValueEditComponents of this value edit container.

getValueEditComponents() - Method in interface org.graffiti.plugin.EditorPlugin

Returns a mapping between attribute classnames and attributeComponent classes.

getValueEditComponents() - Method in class org.graffiti.plugin.EditorPluginAdapter

Returns a mapping from attribute classes to attributeComponent classes.

getValueFont() - Method in class org.jfree.chart.plot.MeterPlot

Returns the font for the value label.

getValueFont() - Method in class org.jfree.chart.plot.ThermometerPlot

Gets the font used to display the current value.

getValueFromString(String) - Static method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.TtestInfo

getValueFromString(String) - Static method in class org.graffiti.attributes.BooleanAttribute

getValueLocation() - Method in class org.jfree.chart.plot.ThermometerPlot

Returns the value location.

getValuePaint() - Method in class org.jfree.chart.plot.MeterPlot

Returns the paint for the value label.

getValuePaint() - Method in class org.jfree.chart.plot.ThermometerPlot

Gets the paint used to display the current value.

getValueRange() - Method in class org.jfree.chart.demo.SampleXYDataset2

Returns the range of values in the range (y-values).

getValueRange() - Method in class org.jfree.data.JDBCXYDataset

Returns the range of the values in this dataset's range (y-values).

getValueRange() - Method in interface org.jfree.data.RangeInfo

Returns the range of the values in this dataset's range.

getValueRange() - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Returns the range of the values in this dataset's range.

getValueRange() - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerXYDataset

Returns the range of the values in this dataset's range.

getValueRange() - Method in class org.jfree.data.statistics.DefaultStatisticalCategoryDataset

Returns the range of the values in this dataset's range.

getValueRange() - Method in class org.jfree.data.time.DynamicTimeSeriesCollection

Returns the value range.

getValues() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DataRowExcelExport

getValues(float[], String) - Static method in class org.graffiti.plugins.ios.exporters.gml.GMLWriter

getValues(String, String) - Static method in class qmwi.kseg.som.Tools

getValuesBall() - Method in class org.graffiti.plugin.parameter.AbstractLimitableParameter

The closed ball diameter exclusive for the current parameter value, such that

v(t) = val
v(t+1) = (val +|- ballDiameter)

whereas t stands for time point.

getValuesBall() - Method in class org.graffiti.plugin.parameter.DoubleParameter

getValuesBall() - Method in class org.graffiti.plugin.parameter.FloatParameter

getValuesBall() - Method in class org.graffiti.plugin.parameter.IntegerParameter

getValuesIndex(int, String) - Method in class qmwi.kseg.som.diagram.AttributsAll

Insert the method's description here.

getVariable() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLAssignmentRule

getVariable() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventAssignmentHelper

getVariable() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLRateRule

getVariables() - Method in class placement.ActiveSetPlacement

getVariables() - Method in interface placement.Placement

getVariety() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getVariety() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getVariety() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MemPlant

getVersion() - Method in class org.graffiti.managers.pluginmgr.PluginDependency

Returns the version.

getVersion() - Method in class org.graffiti.managers.pluginmgr.PluginDescription

Returns the version.

getVerticalAlignment() - Method in class org.jfree.chart.title.Title

Returns the vertical alignment of the title.

getVerticalOpposite(ItemLabelAnchor) - Static method in class org.jfree.chart.labels.ItemLabelAnchor

Deprecated.

Renderer now has positive and negative item label positions.

getVerticalValueAxis() - Method in class org.jfree.chart.plot.ThermometerPlot

Returns the vertical value axis.

getVielfachheit() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.Tie

getView() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.BufferedImageResult

getView() - Method in class org.graffiti.editor.GraffitiFrame

Returns the view of this frame.

getView() - Method in class org.graffiti.editor.GraffitiInternalFrame

Returns the view of this frame.

getViewComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView

getViewComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.ButtonOverlayView

getViewComponent() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView

getViewComponent() - Method in class org.graffiti.plugin.view.AbstractView

getViewComponent() - Method in interface org.graffiti.plugin.view.View

Returns the main component of the view.

getViewComponent() - Method in class org.graffiti.plugins.views.matrix.MatrixView

getViewDescriptions() - Method in class org.graffiti.managers.DefaultViewManager

getViewDescriptions() - Method in interface org.graffiti.managers.ViewManager

getViewID() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getViewID() - Method in class org.graffiti.graph.AbstractGraphElement

getViewID() - Method in interface org.graffiti.graph.GraphElement

getViewManager() - Method in class org.graffiti.editor.MainFrame

Returns the viewManager.

getViewName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView

getViewName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.ButtonOverlayView

getViewName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKGraffitiView

getViewName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView

getViewName() - Method in class org.graffiti.plugin.view.AbstractView

Returns the viewName.

getViewName() - Method in interface org.graffiti.plugin.view.View

Returns the viewName.

getViewName() - Method in class org.graffiti.plugins.views.defaults.GraffitiView

getViewName() - Method in class org.graffiti.plugins.views.matrix.MatrixView

getViewNames() - Method in class org.graffiti.managers.DefaultViewManager

getViewNames() - Method in interface org.graffiti.managers.ViewManager

Returns the class names of the registered views.

getViewRectFromSelection(View, Collection<GraphElement>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithm

getViewRectFromSelection(View, Collection<GraphElement>, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithm

getViews() - Method in interface org.graffiti.plugin.GenericPlugin

Returns the array of class names of the views, this plugin contains.

getViews() - Method in class org.graffiti.plugin.GenericPluginAdapter

Returns the array of org.graffiti.plugin.view.Views the plugin contains.

getViews() - Method in class org.graffiti.session.Session

Returns the list of views in the manager.

getViewToolbarComponentBackground() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView

getViewToolbarComponentBackground() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.ButtonOverlayView

getViewToolbarComponentBackground() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView

getViewToolbarComponentBackground() - Method in class org.graffiti.plugin.view.AbstractView

getViewToolbarComponentBackground() - Method in interface org.graffiti.plugin.view.View

getViewToolbarComponentBottom() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView

getViewToolbarComponentBottom() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.ButtonOverlayView

getViewToolbarComponentBottom() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView

getViewToolbarComponentBottom() - Method in class org.graffiti.plugin.view.AbstractView

getViewToolbarComponentBottom() - Method in interface org.graffiti.plugin.view.View

getViewToolbarComponentLeft() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView

getViewToolbarComponentLeft() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.ButtonOverlayView

getViewToolbarComponentLeft() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView

getViewToolbarComponentLeft() - Method in class org.graffiti.plugin.view.AbstractView

getViewToolbarComponentLeft() - Method in interface org.graffiti.plugin.view.View

getViewToolbarComponentRight() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView

getViewToolbarComponentRight() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.ButtonOverlayView

getViewToolbarComponentRight() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView

getViewToolbarComponentRight() - Method in class org.graffiti.plugin.view.AbstractView

getViewToolbarComponentRight() - Method in interface org.graffiti.plugin.view.View

getViewToolbarComponentTop() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView

getViewToolbarComponentTop() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.ButtonOverlayView

getViewToolbarComponentTop() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView

getViewToolbarComponentTop() - Method in class org.graffiti.plugin.view.AbstractView

getViewToolbarComponentTop() - Method in interface org.graffiti.plugin.view.View

getVisibleElements(Collection<GraphElement>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getVisibleGuiRows() - Method in class org.FolderPanel

getVisibleName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Entry

getVisibleName() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Subtype

getVisibleNodes(Collection<Node>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

getVolume() - Method in class org.jfree.data.OHLCDataItem

Returns the volume.

getVolume(int, int) - Method in class org.jfree.data.CombinedDataset

Returns the volume-value (as a double primitive) for an item within a series.

getVolume(int, int) - Method in class org.jfree.data.DefaultHighLowDataset

Returns the volume-value (as a double primitive) for an item within a series.

getVolume(int, int) - Method in interface org.jfree.data.HighLowDataset

Returns the volume-value (as a double primitive) for an item within a series.

getVolume(int, int) - Method in class org.jfree.data.OHLCDataset

Returns the volume-value (as a double primitive) for an item within a series.

getVolume(int, int) - Method in class org.jfree.data.SubSeriesDataset

Returns the volume-value (as a double primitive) for an item within a series.

getVolumeValue(int, int) - Method in class org.jfree.data.CombinedDataset

Returns the volume value for the specified series and item.

getVolumeValue(int, int) - Method in class org.jfree.data.DefaultHighLowDataset

Returns the volume-value for one item in a series.

getVolumeValue(int, int) - Method in interface org.jfree.data.HighLowDataset

Returns the volume for the specified series and item.

getVolumeValue(int, int) - Method in class org.jfree.data.OHLCDataset

Returns the trading volume.

getVolumeValue(int, int) - Method in class org.jfree.data.SubSeriesDataset

Returns the volume.

getVSplitLayout(JComponent, JComponent, double, double) - Static method in class org.FolderPanel

getWallPaint() - Method in class org.jfree.chart.renderer.BarRenderer3D

Returns the paint used to highlight the left and bottom wall in the plot background.

getWarning() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayWarningInformation

getWarningPaint() - Method in class org.jfree.chart.plot.MeterPlot

Returns the paint used to display the 'warning' range.

getWarningRange() - Method in class org.jfree.chart.plot.MeterPlot

Returns the warning range for the dial.

getWebDirectoryFileListItems(String, String[], boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.WebDirectoryFileListAccess

getWebPageContent(String) - Static method in class org.AttributeHelper

getWebsite(ArrayList<String>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_editing.DBGETresult

getWebsiteButton(String, String, String, String, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.services.GUIhelper

getWebsiteDownloadButton(String, String, String, String, String[], String, FileDownloadStatusInformationProvider) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.services.GUIhelper

getWebsiteDownloadButton(String, String, String, String, String[], String, FileDownloadStatusInformationProvider, Runnable) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.services.GUIhelper

getWeek() - Method in class org.jfree.data.time.Week

Returns the week.

getWeight() - Method in class org.jfree.chart.plot.CategoryPlot

Returns the weight for this plot when it is used as a subplot within a combined plot.

getWeight() - Method in class org.jfree.chart.plot.XYPlot

Returns the weight for this plot when it is used as a subplot within a combined plot.

getWeight() - Method in class org.vanted.plugins.layout.multilevelframework.MergedNode

getWeight(int) - Method in class qmwi.kseg.som.diagram.ClassesNeuron

Insert the method's description here.

getWeights() - Method in class qmwi.kseg.som.diagram.ClassesNeuron

Insert the method's description here.

getWeights() - Method in class qmwi.kseg.som.Map

getWidth() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getWidth() - Method in class org.graffiti.graphics.DimensionAttribute

Returns the 'width'-value of the encapsulated dimension.

getWidth() - Method in class org.jfree.chart.DrawableLegendItem

Get the width of this item.

getWidth(Node) - Static method in class org.AttributeHelper

getWidthRatio() - Method in class org.jfree.chart.axis.CategoryLabelPosition

Returns the ratio used to calculate the maximum category label width.

getWidthType() - Method in class org.jfree.chart.axis.CategoryLabelPosition

Returns the width calculation type.

getWindDirection(int, int) - Method in class org.jfree.data.DefaultWindDataset

Returns the wind direction for one item within a series.

getWindDirection(int, int) - Method in interface org.jfree.data.WindDataset

Returns the wind direction (should be in the range 0 to 12).

getWindForce(int, int) - Method in class org.jfree.data.DefaultWindDataset

Returns the wind force for one item within a series.

getWindForce(int, int) - Method in interface org.jfree.data.WindDataset

Returns the wind force on the Beaufort scale (0 to 12).

getWordWrap(String[], int) - Static method in class org.StringManipulationTools

getWordWrap(String, int) - Static method in class org.StringManipulationTools

getWorkFlowHelp() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.WorkflowHelper

Deprecated.

getWorkSessionFilePath() - Method in class org.graffiti.session.EditorSession

getX() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getX() - Method in class org.color.ColorXYZ

getX() - Method in class org.graffiti.graphics.CoordinateAttribute

Returns the 'x'-value of the encapsulated coordinate.

getX() - Method in class org.graffiti.graphics.Port

Returns the x ccordinate of this port.

getX() - Method in class org.jfree.chart.annotations.XYTextAnnotation

Returns the x coordinate for the text anchor point (measured against the domain axis).

getX() - Method in class org.jfree.chart.DrawableLegendItem

Get the x-coordinate for the item's location.

getX() - Method in class org.jfree.chart.renderer.Outlier

Returns the x coordinate of the bounding box containing the outlier ellipse.

getX() - Method in class org.jfree.data.XYDataItem

Returns the x-value.

getX() - Method in class org.vanted.animation.data.Point2DTimePoint

getX(int, int) - Method in class org.jfree.chart.demo.SampleXYSymbolicDataset

Returns the x-value (as a double primitive) for an item within a series.

getX(int, int) - Method in class org.jfree.chart.demo.SampleYSymbolicDataset

Returns the x-value (as a double primitive) for an item within a series.

getX(int, int) - Method in class org.jfree.data.AbstractXYDataset

Returns the x-value (as a double primitive) for an item within a series.

getX(int, int) - Method in interface org.jfree.data.XYDataset

Returns the x-value (as a double primitive) for an item within a series.

getX(int, int, boolean, boolean, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyXML_XYDataset

getX(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache.MyTools

For geting the x position of a node through attribute access,

getX(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.MyTools

For geting the x position of a node through attribute access,

getXDate(int, int) - Method in class org.jfree.data.DefaultHighLowDataset

Returns the x-value for one item in a series, as a Date.

getXDate(int, int) - Method in class org.jfree.data.OHLCDataset

Returns the x-value for a data item as a date.

getXDate(int, int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerXYDataset

Returns the x-value for one item in a series, as a Date.

getXDateFormat() - Method in class org.jfree.chart.labels.AbstractXYItemLabelGenerator

Returns the date formatter for the x-values.

getXexcess() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TransitionShape

getXexcess() - Method in interface org.graffiti.plugin.view.GraphElementShape

getXexcess() - Method in class org.graffiti.plugins.views.defaults.PolyLineEdgeShape

getXexcess() - Method in class org.graffiti.plugins.views.defaults.RectangularNodeShape

getXexcess() - Method in class org.graffiti.plugins.views.defaults.StraightLineEdgeShape

getXFormat() - Method in class org.jfree.chart.labels.AbstractXYItemLabelGenerator

Returns the number formatter for the x-values.

getXIndices() - Method in interface org.jfree.data.ContourDataset

Returns the index of the xvalues.

getXIndices() - Method in class org.jfree.data.DefaultContourDataset

Returns the index of the xvalues.

getXMLAttributeString(StringBuilder) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getXMLAttributeString(StringBuilder) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getXMLAttributeString(StringBuilder) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

getXMLAttributeString(StringBuilder) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MappingDataEntity

getXMLAttributeString(StringBuilder) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurement

getXMLAttributeString(StringBuilder) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurementInterface

getXMLAttributeString(StringBuilder) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample

getXMLAttributeString(StringBuilder) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverage

getXMLAttributeString(StringBuilder) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverageInterface

getXMLAttributeString(StringBuilder) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface

getXMLAttributeString(StringBuilder) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getXMLAttributeString(StringBuilder) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getXMLAttributeStringForDocument(StringBuilder) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

getXMLAttributeStringForDocument(StringBuilder) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

getXMLdata(File, TableData, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataFileReader

getXMLdataAttribute(GraphElement) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.Experiment2GraphHelper

getXMLDataFromExcelTable(File, TableData, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DBEinputFileReader

getXMLDataFromExcelTable(File, TableData, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataFileReader

getXMLDataFromExcelTable(File, TableData, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.GeneExpressionFileReader

getXMLfile() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.OpenMageFileDialogService

getXMLnodeFromString(String) - Static method in class org.graffiti.plugin.XMLHelper

getXMLstartEndEntity() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathGene

getXMLstartEndEntity() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathMolecule

getXMLstartEndEntity() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathPathway

getXMLstartEndEntity() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReaction

getXMLstartEndEntity() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReference

getXMLstring() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

getXMLstring() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface

getXMLURL() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.Addon

getXMLURL(ClassLoader, File) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.Addon

getXOffset() - Method in interface org.jfree.chart.Effect3D

Returns the x-offset (in Java2D units) for the 3D effect.

getXOffset() - Method in class org.jfree.chart.renderer.BarRenderer3D

Returns the x-offset for the 3D effect.

getXPosition() - Method in class org.jfree.data.time.TimePeriodValuesCollection

Returns the position of the X value within each time period.

getXPosition() - Method in class org.jfree.data.time.TimeSeriesCollection

Returns the position within each time period that is used for the X value when the collection is used as an XYDataset.

getXsrcValue(int, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyXML_XYDataset

getXStringValue(String) - Static method in enum org.graffiti.plugins.views.defaults.DockingAttributeEditor.DockingModes

getXSymbolicValue(int, int) - Method in class org.jfree.chart.demo.SampleXYSymbolicDataset

Returns the X symbolic value of the data set specified by series and item parameters.

getXSymbolicValue(int, int) - Method in interface org.jfree.data.XisSymbolic

Returns the symbolic value of the data set specified by series and item parameters.

getXSymbolicValue(Integer) - Method in class org.jfree.chart.demo.SampleXYSymbolicDataset

Returns the X symbolic value linked with the specified Integer.

getXSymbolicValue(Integer) - Method in interface org.jfree.data.XisSymbolic

Returns the symbolic value linked with the specified Integer.

getXSymbolicValues() - Method in class org.jfree.chart.demo.SampleXYSymbolicDataset

Returns the list of X symbolic values.

getXSymbolicValues() - Method in interface org.jfree.data.XisSymbolic

Returns the list of symbolic values.

getXValue() - Method in class org.jfree.chart.ClipPath

Returns the xValue.

getXValue(int) - Method in class org.jfree.data.DefaultContourDataset

Returns an x value.

getXValue(int) - Method in class org.jfree.data.XYSeries

Returns the x-value at the specified index.

getXValue(int, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyXML_XYDataset

getXValue(int, int) - Method in class org.jfree.chart.demo.EmptyXYDataset

Returns the x-value for the specified series and item.

getXValue(int, int) - Method in class org.jfree.chart.demo.SampleSignalDataset

Returns the x-value for an item within a series.

getXValue(int, int) - Method in class org.jfree.chart.demo.SampleXYDataset

Returns the x-value for the specified series and item.

getXValue(int, int) - Method in class org.jfree.chart.demo.SampleXYDataset2

Returns the x-value for the specified series and item.

getXValue(int, int) - Method in class org.jfree.chart.demo.SampleXYSymbolicDataset

Returns the x-value for the specified series and item.

getXValue(int, int) - Method in class org.jfree.chart.demo.SampleXYZDataset

Returns the x-value for an item within a series.

getXValue(int, int) - Method in class org.jfree.chart.demo.SampleYSymbolicDataset

Returns the x-value for the specified series and item.

getXValue(int, int) - Method in class org.jfree.chart.demo.SimpleIntervalXYDataset

Returns the x-value for an item within a series.

getXValue(int, int) - Method in class org.jfree.chart.demo.SimpleIntervalXYDataset2

Returns the x-value for an item within a series.

getXValue(int, int) - Method in class org.jfree.data.CategoryTableXYDataset

Returns the x-value for the specified series and item.

getXValue(int, int) - Method in class org.jfree.data.CombinedDataset

Returns the X-value for the specified series and item.

getXValue(int, int) - Method in class org.jfree.data.DefaultContourDataset

Returns the x value for the specified series and index (zero-based indices).

getXValue(int, int) - Method in class org.jfree.data.DefaultHighLowDataset

Returns the x-value for one item in a series.

getXValue(int, int) - Method in class org.jfree.data.DefaultTableXYDataset

Returns the x-value for the specified series and item.

getXValue(int, int) - Method in class org.jfree.data.DefaultWindDataset

Returns the x-value for one item within a series.

getXValue(int, int) - Method in class org.jfree.data.JDBCXYDataset

Returns the x-value for the specified series and item.

getXValue(int, int) - Method in class org.jfree.data.MatrixSeriesCollection

Returns the j index value of the specified Mij matrix item in the specified matrix series.

getXValue(int, int) - Method in class org.jfree.data.OHLCDataset

Returns the x-value for a data item.

getXValue(int, int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerXYDataset

Returns the x-value for one item in a series.

getXValue(int, int) - Method in class org.jfree.data.statistics.HistogramDataset

Returns the X value for a bin.

getXValue(int, int) - Method in class org.jfree.data.SubSeriesDataset

Returns the X-value for the specified series and item.

getXValue(int, int) - Method in class org.jfree.data.time.DynamicTimeSeriesCollection

Returns the x-value.

getXValue(int, int) - Method in class org.jfree.data.time.TimePeriodValuesCollection

Returns the x-value for the specified series and item.

getXValue(int, int) - Method in class org.jfree.data.time.TimeSeriesCollection

Returns the x-value for the specified series and item.

getXValue(int, int) - Method in class org.jfree.data.time.TimeTableXYDataset

Returns the x-value for an item within a series.

getXValue(int, int) - Method in class org.jfree.data.XYBarDataset

Returns the x-value for an item within a series.

getXValue(int, int) - Method in interface org.jfree.data.XYDataset

Returns the x-value for an item within a series.

getXValue(int, int) - Method in class org.jfree.data.XYSeriesCollection

Returns the x-value for the specified series and item.

getXValue(String) - Static method in enum org.graffiti.plugins.views.defaults.DockingAttributeEditor.DockingModes

getXValues() - Method in interface org.jfree.data.ContourDataset

Returns the array of Numbers representing the x data values.

getXValues() - Method in class org.jfree.data.DefaultContourDataset

Returns the x values.

getXYPlot() - Method in class org.jfree.chart.JFreeChart

Returns the plot cast as an XYPlot.

getY() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper

getY() - Method in class org.color.ColorXYZ

getY() - Method in class org.graffiti.graphics.CoordinateAttribute

Returns the 'y'-value of the encapsulated coordinate.

getY() - Method in class org.graffiti.graphics.Port

Returns the y ccordinate of this port.

getY() - Method in class org.jfree.chart.annotations.XYTextAnnotation

Returns the y coordinate for the text anchor point (measured against the range axis).

getY() - Method in class org.jfree.chart.DrawableLegendItem

Get the y-coordinate for the item's location.

getY() - Method in class org.jfree.chart.renderer.Outlier

Returns the y coordinate of the bounding box containing the outlier ellipse.

getY() - Method in class org.jfree.data.XYDataItem

Returns the y-value.

getY() - Method in class org.vanted.animation.data.Point2DTimePoint

getY(int, int) - Method in class org.jfree.chart.demo.SampleXYSymbolicDataset

Returns the y-value (as a double primitive) for an item within a series.

getY(int, int) - Method in class org.jfree.chart.demo.SampleYSymbolicDataset

Returns the y-value (as a double primitive) for an item within a series.

getY(int, int) - Method in class org.jfree.data.AbstractXYDataset

Returns the y-value (as a double primitive) for an item within a series.

getY(int, int) - Method in class org.jfree.data.time.DynamicTimeSeriesCollection

Returns the y-value.

getY(int, int) - Method in interface org.jfree.data.XYDataset

Returns the y-value (as a double primitive) for an item within a series.

getY(int, int, boolean, boolean, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyXML_XYDataset

getY(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache.MyTools

For geting the y position of a node through attribute access,

getY(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.MyTools

For geting the y position of a node through attribute access,

getYDateFormat() - Method in class org.jfree.chart.labels.AbstractXYItemLabelGenerator

Returns the date formatter for the y-values.

getYear() - Method in class org.jfree.data.time.Day

Returns the year.

getYear() - Method in class org.jfree.data.time.Hour

Returns the year in which this hour falls.

getYear() - Method in class org.jfree.data.time.Month

Returns the year in which the month falls.

getYear() - Method in class org.jfree.data.time.Quarter

Returns the year.

getYear() - Method in class org.jfree.data.time.Week

Returns the year in which the week falls.

getYear() - Method in class org.jfree.data.time.Year

Returns the year.

getYearValue() - Method in class org.jfree.data.time.Month

Returns the year in which the month falls.

getYearValue() - Method in class org.jfree.data.time.Week

Returns the year in which the week falls, as an integer value.

getYexcess() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TransitionShape

getYexcess() - Method in interface org.graffiti.plugin.view.GraphElementShape

getYexcess() - Method in class org.graffiti.plugins.views.defaults.PolyLineEdgeShape

getYexcess() - Method in class org.graffiti.plugins.views.defaults.RectangularNodeShape

getYexcess() - Method in class org.graffiti.plugins.views.defaults.StraightLineEdgeShape

getYFormat() - Method in class org.jfree.chart.labels.AbstractXYItemLabelGenerator

Returns the number formatter for the y-values.

getYOffset() - Method in interface org.jfree.chart.Effect3D

Returns the y-offset (in Java2D units) for the 3D effect.

getYOffset() - Method in class org.jfree.chart.renderer.BarRenderer3D

Returns the y-offset for the 3D effect.

getYsrcValue(int, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyXML_XYDataset

getYStringValue(String) - Static method in enum org.graffiti.plugins.views.defaults.DockingAttributeEditor.DockingModes

getYSymbolicValue(int, int) - Method in class org.jfree.chart.demo.SampleXYSymbolicDataset

Returns the Y symbolic value of the data set specified by series and item parameters.

getYSymbolicValue(int, int) - Method in class org.jfree.chart.demo.SampleYSymbolicDataset

Returns the symbolic value of the data set specified by series and item parameters.

getYSymbolicValue(int, int) - Method in interface org.jfree.data.YisSymbolic

Returns the symbolic value of the data set specified by series and item parameters.

getYSymbolicValue(Integer) - Method in class org.jfree.chart.demo.SampleXYSymbolicDataset

Returns the Y symbolic value linked with the specified Integer.

getYSymbolicValue(Integer) - Method in class org.jfree.chart.demo.SampleYSymbolicDataset

Returns the symbolic value linked with the specified Integer.

getYSymbolicValue(Integer) - Method in interface org.jfree.data.YisSymbolic

Returns the symbolic value linked with the specified Integer.

getYSymbolicValues() - Method in class org.jfree.chart.demo.SampleXYSymbolicDataset

Returns the list of Y symbolic values.

getYSymbolicValues() - Method in class org.jfree.chart.demo.SampleYSymbolicDataset

Returns the list of symbolic values.

getYSymbolicValues() - Method in interface org.jfree.data.YisSymbolic

Returns the list of symbolic values.

getYValue() - Method in class org.jfree.chart.ClipPath

Returns the yValue.

getYValue(int) - Method in class org.jfree.data.XYSeries

Returns the y-value at the specified index.

getYValue(int, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyXML_XYDataset

getYValue(int, int) - Method in class org.jfree.chart.demo.EmptyXYDataset

Returns the y-value for the specified series and item.

getYValue(int, int) - Method in class org.jfree.chart.demo.SampleSignalDataset

Returns the y-value for an item within a series.

getYValue(int, int) - Method in class org.jfree.chart.demo.SampleXYDataset

Returns the y-value for the specified series and item.

getYValue(int, int) - Method in class org.jfree.chart.demo.SampleXYDataset2

Returns the y-value for the specified series and item.

getYValue(int, int) - Method in class org.jfree.chart.demo.SampleXYSymbolicDataset

Returns the y-value for the specified series and item.

getYValue(int, int) - Method in class org.jfree.chart.demo.SampleXYZDataset

Returns the y-value for an item within a series.

getYValue(int, int) - Method in class org.jfree.chart.demo.SampleYSymbolicDataset

Returns the y-value for the specified series and item.

getYValue(int, int) - Method in class org.jfree.chart.demo.SimpleIntervalXYDataset

Returns the y-value for an item within a series.

getYValue(int, int) - Method in class org.jfree.chart.demo.SimpleIntervalXYDataset2

Returns the y-value for an item within a series.

getYValue(int, int) - Method in class org.jfree.data.CategoryTableXYDataset

Returns the y-value for the specified series and item.

getYValue(int, int) - Method in class org.jfree.data.CombinedDataset

Returns the Y-value for the specified series and item.

getYValue(int, int) - Method in class org.jfree.data.DefaultContourDataset

Returns the y value for the specified series and index (zero-based indices).

getYValue(int, int) - Method in class org.jfree.data.DefaultHighLowDataset

Returns the y-value for one item in a series.

getYValue(int, int) - Method in class org.jfree.data.DefaultTableXYDataset

Returns the y-value for the specified series and item.

getYValue(int, int) - Method in class org.jfree.data.DefaultWindDataset

Returns the y-value for one item within a series.

getYValue(int, int) - Method in class org.jfree.data.JDBCXYDataset

Returns the y-value for the specified series and item.

getYValue(int, int) - Method in class org.jfree.data.MatrixSeriesCollection

Returns the i index value of the specified Mij matrix item in the specified matrix series.

getYValue(int, int) - Method in class org.jfree.data.OHLCDataset

Returns the y-value.

getYValue(int, int) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerXYDataset

Returns the y-value for one item in a series.

getYValue(int, int) - Method in class org.jfree.data.statistics.HistogramDataset

Returns the y-value for a bin (calculated to take into account the histogram type).

getYValue(int, int) - Method in class org.jfree.data.SubSeriesDataset

Returns the Y-value for the specified series and item.

getYValue(int, int) - Method in class org.jfree.data.time.DynamicTimeSeriesCollection

Returns the y-value.

getYValue(int, int) - Method in class org.jfree.data.time.TimePeriodValuesCollection

Returns the y-value for the specified series and item.

getYValue(int, int) - Method in class org.jfree.data.time.TimeSeriesCollection

Returns the y-value for the specified series and item.

getYValue(int, int) - Method in class org.jfree.data.time.TimeTableXYDataset

Returns the y-value for an item within a series.

getYValue(int, int) - Method in class org.jfree.data.XYBarDataset

Returns the y-value for an item within a series.

getYValue(int, int) - Method in interface org.jfree.data.XYDataset

Returns the y-value for an item within a series.

getYValue(int, int) - Method in class org.jfree.data.XYSeriesCollection

Returns the y-value for the specified series and item.

getYValue(String) - Static method in enum org.graffiti.plugins.views.defaults.DockingAttributeEditor.DockingModes

getYValues() - Method in interface org.jfree.data.ContourDataset

Returns the array of Numbers representing the y data values.

getYValues() - Method in class org.jfree.data.DefaultContourDataset

Returns a Number array containing all y values.

getZ() - Method in class org.color.ColorXYZ

getZ(int, int) - Method in class org.jfree.data.AbstractXYZDataset

Returns the z-value (as a double primitive) for an item within a series.

getZ(int, int) - Method in interface org.jfree.data.XYZDataset

Returns the z-value (as a double primitive) for an item within a series.

getZDateFormat() - Method in class org.jfree.chart.labels.StandardXYZToolTipGenerator

Returns the date formatter for the z-values.

getZFormat() - Method in class org.jfree.chart.labels.StandardXYZToolTipGenerator

Returns the number formatter for the z-values.

getZoom() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView

getZoom() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView

getZoom() - Method in class org.graffiti.plugin.view.AbstractView

getZoom() - Method in interface org.graffiti.plugin.view.Zoomable

DOCUMENT ME!

getZoomInFactor() - Method in class org.jfree.chart.ChartPanel

Returns the zoom in factor.

getZoomOutFactor() - Method in class org.jfree.chart.ChartPanel

Returns the zoom out factor.

getZoomTriggerDistance() - Method in class org.jfree.chart.ChartPanel

Returns the zoom trigger distance.

getZValue(int, int) - Method in class org.jfree.chart.demo.SampleXYZDataset

Returns the z-value for the specified series and item.

getZValue(int, int) - Method in class org.jfree.data.DefaultContourDataset

Returns the z value for the specified series and index (zero-based indices).

getZValue(int, int) - Method in class org.jfree.data.MatrixSeriesCollection

Returns the Mij item value of the specified Mij matrix item in the specified matrix series.

getZValue(int, int) - Method in interface org.jfree.data.XYZDataset

Returns the z-value for the specified series and item.

getZValueRange(Range, Range) - Method in interface org.jfree.data.ContourDataset

Returns the maximum z-value within visible region of plot.

getZValueRange(Range, Range) - Method in class org.jfree.data.DefaultContourDataset

Returns the maximum z-value within visible region of plot.

getZValues() - Method in interface org.jfree.data.ContourDataset

Returns the array of Numbers representing the z data values.

getZValues() - Method in class org.jfree.data.DefaultContourDataset

Returns a Number array containing all z values.

GlobalHotkeyManager - Class in org.graffiti.editor

glycosylation - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.SubtypeName

Gml2PathwayError - Enum in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml

Gml2PathwayErrorInformation - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml

Gml2PathwayErrorInformation(Gml2PathwayError, ArrayList<Attributable>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayErrorInformation

Gml2PathwayErrorInformation(Gml2PathwayError, ArrayList<Attributable>, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayErrorInformation

Gml2PathwayErrorInformation(Gml2PathwayError, Attributable) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayErrorInformation

Gml2PathwayWarning - Enum in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml

Gml2PathwayWarningInformation - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml

Gml2PathwayWarningInformation(Gml2PathwayWarning, Attributable) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayWarningInformation

GMLgzWriter - Class in org.graffiti.plugins.ios.exporters.gml

GMLgzWriter() - Constructor for class org.graffiti.plugins.ios.exporters.gml.GMLgzWriter

GMLReader - Class in org.graffiti.plugins.ios.importers.gml

This class provides a reader for graphs in gml format.

GMLReader() - Constructor for class org.graffiti.plugins.ios.importers.gml.GMLReader

Constructs a new GMLReader

GMLReaderPlugin - Class in org.graffiti.plugins.ios.importers.gml

DOCUMENT ME!

GMLReaderPlugin() - Constructor for class org.graffiti.plugins.ios.importers.gml.GMLReaderPlugin

Creates a new GMLReaderPlugin object.

GMLSerializerPlugin - Class in org.graffiti.plugins.ios.exporters.gml

Provides a GML serializer.

GMLSerializerPlugin() - Constructor for class org.graffiti.plugins.ios.exporters.gml.GMLSerializerPlugin

Constructor for GMLSerializerPlugin.

GMLWriter - Class in org.graffiti.plugins.ios.exporters.gml

Provides a GML writer.

GMLWriter() - Constructor for class org.graffiti.plugins.ios.exporters.gml.GMLWriter

Constructs a new GML writer.

GMLXMLSerializerPlugin - Class in org.graffiti.plugins.ios.exporters.gmlxml

Provides a GML serializer.

GMLXMLSerializerPlugin() - Constructor for class org.graffiti.plugins.ios.exporters.gmlxml.GMLXMLSerializerPlugin

Constructor for GMLSerializerPlugin.

GMLXMLWriter - Class in org.graffiti.plugins.ios.exporters.gmlxml

Provides a GML writer.

GMLXMLWriter() - Constructor for class org.graffiti.plugins.ios.exporters.gmlxml.GMLXMLWriter

Constructs a new GML writer.

GO - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter.QueryType

GOACCESSION - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathMolecule

GODESCRIPTION - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathMolecule

GOinformation - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go

GOinformation(String, String, String, Collection<String>, Collection<String>, boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.GOinformation

GoProcessing - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go

GoProcessing(File) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.GoProcessing

GOTYPE - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathMolecule

GRADIENT - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants

GradientFillAttribute - Class in org.graffiti.graphics

GradientFillAttribute(String) - Constructor for class org.graffiti.graphics.GradientFillAttribute

GradientFillAttribute(String, double) - Constructor for class org.graffiti.graphics.GradientFillAttribute

GradientFillAttribute(String, Double) - Constructor for class org.graffiti.graphics.GradientFillAttribute

GradientFillAttributeEditor - Class in org.graffiti.plugins.views.defaults

GradientFillAttributeEditor(Displayable) - Constructor for class org.graffiti.plugins.views.defaults.GradientFillAttributeEditor

GradientFillAttributeEditor.NodeGradientModes - Enum in org.graffiti.plugins.views.defaults

GradientFillAttributeEditor.NodeGradientRenderer - Class in org.graffiti.plugins.views.defaults

GraffitiAbstractUndoableEdit - Class in org.graffiti.undo

GraffitiAbstractUndoableEdit

GraffitiAbstractUndoableEdit(Map<GraphElement, GraphElement>) - Constructor for class org.graffiti.undo.GraffitiAbstractUndoableEdit

Creates a new GraffitiAbstractUndoableEdit object.

GraffitiAction - Class in org.graffiti.plugin.actions

Represents the basic action in the graffiti system.

GraffitiAction(String, MainFrame, String) - Constructor for class org.graffiti.plugin.actions.GraffitiAction

Constructs a new GraffitiAction from the given name.

GraffitiAttributesPlugin - Class in org.graffiti.plugins.attributes.defaults

This class provides the default attribute types.

GraffitiAttributesPlugin() - Constructor for class org.graffiti.plugins.attributes.defaults.GraffitiAttributesPlugin

Constructs a new GraffitiAttributesPlugin.

GraffitiButton - Class in org.graffiti.plugin.gui

TODO

GraffitiButton(String) - Constructor for class org.graffiti.plugin.gui.GraffitiButton

Creates a new GraffitiButton object.

GraffitiButton(String, String) - Constructor for class org.graffiti.plugin.gui.GraffitiButton

Creates a new GraffitiButton object.

GraffitiButton(String, Action) - Constructor for class org.graffiti.plugin.gui.GraffitiButton

Creates a new GraffitiButton object.

GraffitiButton(String, Icon) - Constructor for class org.graffiti.plugin.gui.GraffitiButton

Creates a new GraffitiButton object.

GraffitiButtonGroup - Class in org.graffiti.editor

Represents a button group.

GraffitiButtonGroup() - Constructor for class org.graffiti.editor.GraffitiButtonGroup

Creates a new GraffitiButtonGroup object.

GraffitiCharts - Enum in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings

GraffitiComponent - Interface in org.graffiti.plugin.gui

Interface for all GUIComponents used in the editor.

GraffitiContainer - Interface in org.graffiti.plugin.gui

DOCUMENT ME!

GraffitiEditor - Class in org.graffiti.editor

Contains the graffiti editor.

GraffitiEditor() - Constructor for class org.graffiti.editor.GraffitiEditor

Constructs a new instance of the editor.

GraffitiFrame - Class in org.graffiti.editor

A specialized internal frame for the graffiti editor.

GraffitiFrame(GraffitiInternalFrame, boolean) - Constructor for class org.graffiti.editor.GraffitiFrame

Constructs a new GraffitiInternalFrame.

GraffitiInternalFrame - Class in org.graffiti.editor

A specialized internal frame for the graffiti editor.

GraffitiInternalFrame() - Constructor for class org.graffiti.editor.GraffitiInternalFrame

Constructs a new GraffitiInternalFrame.

GraffitiInternalFrame(EditorSession, View, String, boolean) - Constructor for class org.graffiti.editor.GraffitiInternalFrame

Constructor that sets the session, as well as the title.

GraffitiMenu - Class in org.graffiti.plugin.gui

DOCUMENT ME!

GraffitiMenu() - Constructor for class org.graffiti.plugin.gui.GraffitiMenu

GraffitiMenuItem - Class in org.graffiti.plugin.gui

TODO

GraffitiMenuItem(String, Action) - Constructor for class org.graffiti.plugin.gui.GraffitiMenuItem

Constructs a new GraffitiMenuItem.

GraffitiShape - Interface in org.graffiti.plugin.view

GraffitiToggleButton - Class in org.graffiti.plugin.gui

Abstract class for all ToggleButtons that should be used as GraffitiComponents.

GraffitiToggleButton() - Constructor for class org.graffiti.plugin.gui.GraffitiToggleButton

Creates a new GraffitiToggleButton object.

GraffitiToggleButton(String) - Constructor for class org.graffiti.plugin.gui.GraffitiToggleButton

Creates a new GraffitiToggleButton object.

GraffitiToggleButton(String, String) - Constructor for class org.graffiti.plugin.gui.GraffitiToggleButton

Creates a new GraffitiToggleButton object.

GraffitiToggleButton(String, Icon) - Constructor for class org.graffiti.plugin.gui.GraffitiToggleButton

Creates a new GraffitiToggleButton object.

GraffitiToolbar - Class in org.graffiti.plugin.gui

TODO

GraffitiToolbar() - Constructor for class org.graffiti.plugin.gui.GraffitiToolbar

Standardconstructor for GraffitiToolbar.

GraffitiToolbar(String) - Constructor for class org.graffiti.plugin.gui.GraffitiToolbar

Constructor that sets the id of this GraffitiToolbar.

GraffitiToolComponent - Interface in org.graffiti.plugin.gui

GraffitiValueEditComponents - Class in org.graffiti.plugins.editcomponents.defaults

This class is a plugin providing some default value edit components.

GraffitiValueEditComponents() - Constructor for class org.graffiti.plugins.editcomponents.defaults.GraffitiValueEditComponents

Constructs a new GraffitiValueEditComponent.

GraffitiView - Class in org.graffiti.plugins.views.defaults

An implementation of org.graffiti.plugin.view.View2D, that displays a graph.

GraffitiView() - Constructor for class org.graffiti.plugins.views.defaults.GraffitiView

GraffitiViewComponent - Interface in org.graffiti.plugin.view

DOCUMENT ME!

graph - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ChartOptions

Graph - Class in placement

Graph - Interface in org.graffiti.graph

A Graph consists of a set of nodes and a set of edges.

Graph() - Constructor for class placement.Graph

GRAPH - org.graffiti.plugin.algorithm.Category

GRAPH - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPH_ELEMENT_LITERAL - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLConstants

graph tag

graph1 - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.WorkTask

graph2fn - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.WorkTask

GraphAdapter - Class in org.graffiti.event

Adapter for the GraphListener interface, providing default empty implementation.

GraphAdapter() - Constructor for class org.graffiti.event.GraphAdapter

GraphComponentEditComponent - Class in org.graffiti.plugin.editcomponent

This class provides an edit component for parts of a graph.

GraphConstraint - Interface in org.graffiti.plugin.mode

A GraphConstraint is a constraint to the graph which can be validated and which is supposed to be satisfied all the time.

GraphConstraintChecker - Class in org.graffiti.session

This class checks constraints on the graph.

GraphConstraintChecker(Graph, ConstraintCheckerListener) - Constructor for class org.graffiti.session.GraphConstraintChecker

Constructs a new GraphConstraintChecker checking constraints on the specified Graph.

GraphElement - Interface in org.graffiti.graph

Interfaces a graph element.

GraphElementComponent - Class in org.graffiti.plugin.view

Class that shares common members for all GraphElementComponents.

GraphElementComponent() - Constructor for class org.graffiti.plugin.view.GraphElementComponent

GraphElementComponentInterface - Interface in org.graffiti.plugin.view

GraphElementGraphicAttribute - Class in org.graffiti.graphics

Defines the common graphic attributes for nodes and edges

GraphElementGraphicAttribute(String) - Constructor for class org.graffiti.graphics.GraphElementGraphicAttribute

Constructor for GraphElementGraphicAttribute.

GraphElementGraphicAttribute(String, Image, Color, Color, LabelAttribute, double, LineModeAttribute, String) - Constructor for class org.graffiti.graphics.GraphElementGraphicAttribute

Constructor for GraphElementGraphicAttribute.

GraphElementGraphicAttribute(String, ImageAttribute, ColorAttribute, ColorAttribute, LabelAttribute, DoubleAttribute, LineModeAttribute, StringAttribute) - Constructor for class org.graffiti.graphics.GraphElementGraphicAttribute

Constructor for GraphElementGraphicAttribute.

GraphElementHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper

GraphElementHelper(GraphElement) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.GraphElementHelper

GraphElementNotFoundException - Exception in org.graffiti.graph

The GraphElementNotFoundException will be thrown if a method tries to deal with a GraphElement which cannot be found in the Graph.

GraphElementNotFoundException(String) - Constructor for exception org.graffiti.graph.GraphElementNotFoundException

Constructs a new GraphElementNotFoundException with the specified detail message.

GraphElementsDeletionEdit - Class in org.graffiti.undo

GraphElementsDeletionEdit makes deletion of graph elements undoable.

GraphElementsDeletionEdit(Collection<GraphElement>, Graph, Map<GraphElement, GraphElement>) - Constructor for class org.graffiti.undo.GraphElementsDeletionEdit

GraphElementsEdit - Class in org.graffiti.undo

GraphElementsEdit is abstract class for building edits belong to the operations on graph elements like adding or removing.

GraphElementsEdit(Graph, Map<GraphElement, GraphElement>) - Constructor for class org.graffiti.undo.GraphElementsEdit

Create a nes GraphElementsEdit.

GraphElementSelectionLabel - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.gui

GraphElementSelectionLabel(Collection<Attributable>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.gui.GraphElementSelectionLabel

GraphElementSelectionLabel(Attributable) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.gui.GraphElementSelectionLabel

GraphElementShape - Interface in org.graffiti.plugin.view

Interface combining NodeShape and EdgeShape.

GraphEvent - Class in org.graffiti.event

Contains a graph event.

GraphEvent(Edge) - Constructor for class org.graffiti.event.GraphEvent

Constructs a graph event object with the specified source component.

GraphEvent(Graph) - Constructor for class org.graffiti.event.GraphEvent

Constructs a graph event object with the specified source component.

GraphEvent(Node) - Constructor for class org.graffiti.event.GraphEvent

Constructs a graph event object with the specified source component.

GraphEvent(Node, Node) - Constructor for class org.graffiti.event.GraphEvent

Constructs a graph event object with the graph of the first node as source and saves the two given nodes.

GraphGenerationPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation

GraphGenerationPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.GraphGenerationPlugin

GraphHelper - Class in de.ipk_gatersleben.ag_nw.graffiti

Graph Helper Class - A Collection of Helper routines for the work with graphs

GraphHelper() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

GraphHelperBio - Class in de.ipk_gatersleben.ag_nw.graffiti

GraphHelperBio() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.GraphHelperBio

GRAPHIC_ATTRIBUTE_LITERAL - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLConstants

graphicAttributeChanged(Attribute) - Method in interface org.graffiti.plugin.view.GraphElementComponentInterface

Called when a graphic attribute of the GraphElement represented by this component has changed.

graphicAttributeChanged(Attribute) - Method in class org.graffiti.plugins.views.defaults.AbstractGraphElementComponent

Called when a graphic attribute of the GraphElement represented by this component has changed.

graphicAttributeChanged(Attribute) - Method in class org.graffiti.plugins.views.defaults.EdgeComponent

Called when a graphic attribute of the edge represented by this component has changed.

graphicAttributeChanged(Attribute) - Method in class org.graffiti.plugins.views.defaults.NodeComponent

Called when a graphic attribute of the node represented by this component has changed.

GraphicAttributeConstants - Interface in org.graffiti.graphics

Defines constants used when accessing graphics attributes.

GraphicExport - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter

GraphicExport() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.GraphicExport

GraphicHelper - Class in org.graffiti.util

GraphicHelper() - Constructor for class org.graffiti.util.GraphicHelper

Graphics - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml

Graphics(String, kgmlNumber, kgmlNumber, kgmlGraphicsType, kgmlNumber, kgmlNumber, kgmlColor, kgmlColor, boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Graphics

GRAPHICS - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants

GRAPHICS - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_ANCHOR - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_ARROW - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_ARROW_HEAD - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_ARROW_TAIL - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_BACKGROUND - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_BITMAP - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_CAPSTYLE - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_D - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_ELEMENT_LITERAL - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLConstants

GRAPHICS_EXTENT - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_FILL - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_FONT - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_FOREGROUND - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_H - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_IMAGE - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_JOINSTYLE - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_JUSTIFY - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_LINE - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_OUTLINE - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_POINT - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_SMOOTH - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_SPLINESTEPS - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_START - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_STIPPLE - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_STYLE - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_TYPE - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_VISIBLE - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_W - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_WIDTH - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_X - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_Y - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GRAPHICS_Z - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

GraphListener - Interface in org.graffiti.event

Interface that contains methods which are called when a graph is changed.

GraphMLEntityResolver - Class in org.graffiti.plugins.ios.importers.graphml.parser

Class GraphMLEntityResolver implements the EntityResolver interface to resolve external entities.

GraphMLEntityResolver() - Constructor for class org.graffiti.plugins.ios.importers.graphml.parser.GraphMLEntityResolver

Constructs a new GraphMLEntityResolver.

GraphMLException - Exception in org.graffiti.plugins.ios.importers.graphml

This exception is thrown when errors occur during parsing.

GraphMLException(Throwable) - Constructor for exception org.graffiti.plugins.ios.importers.graphml.GraphMLException

Constructs a new GraphMLException from a given Throwable.

GraphMLFilter - Class in org.graffiti.plugins.ios.importers.graphml.parser

Class GraphMLFilter processes the SAX events generated by the parser and builds the graph according to the events.

GraphMLFilter(XMLReader, Graph) - Constructor for class org.graffiti.plugins.ios.importers.graphml.parser.GraphMLFilter

Constructs a new GraphMLFilter.

GraphMLgzWriter - Class in org.graffiti.plugins.ios.exporters.graphml

GraphMLgzWriter() - Constructor for class org.graffiti.plugins.ios.exporters.graphml.GraphMLgzWriter

GraphMLParser - Class in org.graffiti.plugins.ios.importers.graphml.parser

Class GraphMLParser is responsible for setting up the XML parsing environment.

GraphMLParser() - Constructor for class org.graffiti.plugins.ios.importers.graphml.parser.GraphMLParser

Constructs a new GraphMLParser.

GraphMLReader - Class in org.graffiti.plugins.ios.importers.graphml

This class implements the interface to invoke the reading of graphML files.

GraphMLReader() - Constructor for class org.graffiti.plugins.ios.importers.graphml.GraphMLReader

Constructs a new GraphMLReader.

GraphMLReaderPlugin - Class in org.graffiti.plugins.ios.importers.graphml

This plugin provides the functionality for reading graphML files.

GraphMLReaderPlugin() - Constructor for class org.graffiti.plugins.ios.importers.graphml.GraphMLReaderPlugin

Constructs a new GraphMLReaderPlugin.

GraphMLWriter - Class in org.graffiti.plugins.ios.exporters.graphml

Class GraphMLWriter is the main class for writing a graph to a graphML file.

GraphMLWriter() - Constructor for class org.graffiti.plugins.ios.exporters.graphml.GraphMLWriter

Constructs a new GraphMLWriter.

GraphMLWriterPlugin - Class in org.graffiti.plugins.ios.exporters.graphml

The plugin class for the graphML writing package.

GraphMLWriterPlugin() - Constructor for class org.graffiti.plugins.ios.exporters.graphml.GraphMLWriterPlugin

Constructs a new GraphMLWriterPlugin.

graphNode - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.IdAndGraphNode

GraphParser - Class in placement

GraphPostProcessor - Interface in org.graffiti.plugin.io

Interfaces a "graph post-processor", which is called once a graph is newly loaded from file and once a graph is newly created.

GraphScaler - Class in org.vanted.scaling.vanted

Responsible for the synchronization between scaling and the established graph zooming, which acts as graph scaling.

GraphScaler() - Constructor for class org.vanted.scaling.vanted.GraphScaler

GraphTab - Class in org.graffiti.plugins.inspectors.defaults

Represents the tab, which contains the functionality to edit the attributes of the current graph object.

GraphTab() - Constructor for class org.graffiti.plugins.inspectors.defaults.GraphTab

Constructs a GraphTab and sets the title.

GraphTreeLayout - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.tree_simple

An implementation of a tree layout algorithm.

GraphTreeLayout() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.tree_simple.GraphTreeLayout

Constructs a new GraphTreeLayout algorithm instance.

GraphTreeLayoutPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.tree_simple

Plugin for a tree layouter algorithm

GraphTreeLayoutPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.tree_simple.GraphTreeLayoutPlugin

Creates a new GraphTreeLayoutPlugin object.

GraphView - Interface in org.graffiti.plugin.view

GravistoFileFilter - Class in org.graffiti.managers

GravistoFileFilter(String, String) - Constructor for class org.graffiti.managers.GravistoFileFilter

GravistoJavaHelp - org.FeatureSet

GravistoMain - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart

Deprecated.

because the Java Applet API is deprecated

GravistoMain() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.GravistoMain

Deprecated.

GravistoMain(boolean, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.GravistoMain

Deprecated.

Constructs a new instance of the editor.

GravistoMainHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart

GravistoMainHelper() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.GravistoMainHelper

GravistoPreferences - Class in org.graffiti.options

GravistoPreferences() - Constructor for class org.graffiti.options.GravistoPreferences

GravistoService - Class in org.graffiti.editor

Provides access to global variables, needed for various extensions to Graffiti.

GravistoService() - Constructor for class org.graffiti.editor.GravistoService

greater - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOperation

GREEN - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants

GreyPalette - Class in org.jfree.chart.ui

A grey color palette.

GreyPalette() - Constructor for class org.jfree.chart.ui.GreyPalette

Creates a new palette.

Grid - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement

Grid(int, int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement.Grid

gridColor - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ChartOptions

GRIDCOLOR - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants

gridEnabled - Static variable in class org.graffiti.plugins.modes.defaults.MegaMoveTool

GridLayoutAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout

Resize+Gridlayout: Resizes all nodes and places them on a grid.

GridLayoutAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.GridLayoutAlgorithm

GridLayouterAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid

Gridlayouter algorithm: Performs a layout where every node is placed on a position of a grid.

GridLayouterAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid.GridLayouterAlgorithm

GridLayouterPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid

Plugin for Gridlayouter algorithm

GridLayouterPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid.GridLayouterPlugin

Creates a new GridLayouterPlugin object.

gridMovement - Static variable in class org.graffiti.plugins.modes.defaults.MegaMoveTool

GridPlacementAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement

GridPlacementAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement.GridPlacementAlgorithm

GridPlacementPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement

GridPlacementPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement.GridPlacementPlugin

gridResizeLargeNodes - Static variable in class org.graffiti.plugins.modes.defaults.MegaMoveTool

gridResizeNormalNodes - Static variable in class org.graffiti.plugins.modes.defaults.MegaMoveTool

gridResizeSmallNodes - Static variable in class org.graffiti.plugins.modes.defaults.MegaMoveTool

gridWidth - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ChartOptions

group - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.EntryType

group - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.DrawingGroup

GroupedStackedBarRenderer - Class in org.jfree.chart.renderer

A renderer that draws stacked bars within groups.

GroupedStackedBarRenderer() - Constructor for class org.jfree.chart.renderer.GroupedStackedBarRenderer

Creates a new renderer.

GroupLinkProcessingMode - Enum in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references

GROUPS_ITEM - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathGene

GROWTHCONDITIONS - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition.ConditionInfo

GrubbsTestAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest

Executes the Grubbs' statistical test to detect outliers.

GrubbsTestAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.GrubbsTestAlgorithm

GUIhelper - Class in de.ipk_gatersleben.ag_nw.graffiti.services

GUIhelper() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.services.GUIhelper

GuiRow - Class in org

GuiRow(JComponent, JComponent) - Constructor for class org.GuiRow

GZIP - Static variable in class org.graffiti.plugins.ios.exporters.graphml.Base64

Specify that data should be gzip-compressed.

GZIP - Static variable in class org.graffiti.plugins.ios.importers.graphml.parser.Base64

Specify that data should be gzip-compressed.

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