Index

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _
All Classes|All Packages

E

EAST - Static variable in class org.jfree.chart.Legend

Constant anchor value for legend position EAST.

EAST - Static variable in class org.jfree.chart.title.Title

Useful constant for the title position.

EAST_NORTHEAST - Static variable in class org.jfree.chart.Legend

Constant anchor value for legend position EAST_NORTHEAST.

EAST_SOUTHEAST - Static variable in class org.jfree.chart.Legend

Constant anchor value for legend position EAST_SOUTHEAST.

ECrel - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.RelationType

Edge - Interface in org.graffiti.graph

Provides an interfaces for a GraphEdge.

EDGE - org.graffiti.plugin.algorithm.Category

EDGE - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

EDGE_ELEMENT_LITERAL - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLConstants

EDGE_INDEX - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.PatternAttributeUtils

The attribute name for the edge index.

EDGE_STYLE - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

EdgeAdapter - Class in org.graffiti.event

Adapter for the EdgeListener interface, providing default empty implementation.

EdgeAdapter() - Constructor for class org.graffiti.event.EdgeAdapter

EdgeArrowShapeEditComponent - Class in org.graffiti.plugins.editcomponents.defaults

EdgeArrowShapeEditComponent(Displayable) - Constructor for class org.graffiti.plugins.editcomponents.defaults.EdgeArrowShapeEditComponent

EdgeBorder - Class in org.graffiti.plugin.tool

DOCUMENT ME!

EdgeBorder(Color, int, boolean) - Constructor for class org.graffiti.plugin.tool.EdgeBorder

Constructor for EdgeBorder.

EdgeComponent - Class in org.graffiti.plugins.views.defaults

This component represents a org.graffiti.graph.Edge.

EdgeComponent(GraphElement, NodeComponent, NodeComponent) - Constructor for class org.graffiti.plugins.views.defaults.EdgeComponent

Constructor for EdgeComponent.

EdgeComponentHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.viewcomponents

EdgeComponentHelper() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.viewcomponents.EdgeComponentHelper

EdgeComponentInterface - Interface in org.graffiti.plugin.view

This component represents a org.graffiti.graph.Edge.

EdgeCountAccumulator - Class in org.vanted.indexednodes.accumulators

EdgeCountAccumulator(Integer) - Constructor for class org.vanted.indexednodes.accumulators.EdgeCountAccumulator

EdgeDockingRenderer() - Constructor for class org.graffiti.plugins.views.defaults.DockingAttributeEditor.EdgeDockingRenderer

EdgeEditComponent - Class in org.graffiti.plugin.editcomponent

This class provides an edit component for selecting a single edge.

EdgeEditComponent(Displayable) - Constructor for class org.graffiti.plugin.editcomponent.EdgeEditComponent

Constructs a new EdgeEditComponent.

EdgeEvent - Class in org.graffiti.event

Contains an edge event.

EdgeEvent(Edge) - Constructor for class org.graffiti.event.EdgeEvent

Constructs an edge event object with the specified source component.

EdgeGraphicAttribute - Class in org.graffiti.graphics

Defines all graphic attributes of an edge

EdgeGraphicAttribute() - Constructor for class org.graffiti.graphics.EdgeGraphicAttribute

Constructs an EdgeGraphicAttribute and initializes all its members.

EdgeGraphicAttribute(String, String, double, DockingAttribute) - Constructor for class org.graffiti.graphics.EdgeGraphicAttribute

Constructs an EdgeGraphicAttribute and initializes all its members.

EdgeGraphicAttribute(String, String, double, DockingAttribute, LinkedHashMapAttribute, String) - Constructor for class org.graffiti.graphics.EdgeGraphicAttribute

Constructs an EdgeGraphicAttribute and initializes all its members.

EdgeGraphicAttribute(String, String, DoubleAttribute, DockingAttribute) - Constructor for class org.graffiti.graphics.EdgeGraphicAttribute

Constructs an EdgeGraphicAttribute and initializes all its members.

EdgeGraphicAttribute(StringAttribute, StringAttribute, double, DockingAttribute) - Constructor for class org.graffiti.graphics.EdgeGraphicAttribute

Constructs an EdgeGraphicAttribute and initializes all its members.

EdgeHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper

EdgeHelper() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.EdgeHelper

EdgeLabelAttribute - Class in org.graffiti.graphics

DOCUMENT ME!

EdgeLabelAttribute(String) - Constructor for class org.graffiti.graphics.EdgeLabelAttribute

Constructor for EdgeLabelAttribute.

EdgeLabelAttribute(String, String) - Constructor for class org.graffiti.graphics.EdgeLabelAttribute

Constructor for EdgeLabelAttribute.

EdgeLabelPositionAttribute - Class in org.graffiti.graphics

DOCUMENT ME!

EdgeLabelPositionAttribute(String) - Constructor for class org.graffiti.graphics.EdgeLabelPositionAttribute

Constructor for NodeLabelPositionAttribute.

EdgeLabelPositionAttribute(String, double, int, double, double) - Constructor for class org.graffiti.graphics.EdgeLabelPositionAttribute

Constructor for NodeLabelPositionAttribute.

EdgeLabelPositionAttribute(String, DoubleAttribute, IntegerAttribute, DoubleAttribute, DoubleAttribute) - Constructor for class org.graffiti.graphics.EdgeLabelPositionAttribute

Constructor for NodeLabelPositionAttribute.

EdgeListener - Interface in org.graffiti.event

Interface that contains methods which are called when an edge is changed.

EdgeParameter - Class in org.graffiti.plugin.parameter

This class contains a single Edge.

EdgeParameter(String, String) - Constructor for class org.graffiti.plugin.parameter.EdgeParameter

Constructs a new edge parameter.

EdgeParameter(Edge, String, String) - Constructor for class org.graffiti.plugin.parameter.EdgeParameter

Constructs a new edge parameter.

EdgeRoutingAlgorithm - Class in org.vanted.plugins.layout.adaptagrams.edgerouting

EdgeRoutingAlgorithm() - Constructor for class org.vanted.plugins.layout.adaptagrams.edgerouting.EdgeRoutingAlgorithm

EdgeRoutingPlugin - Class in org.vanted.plugins.layout.adaptagrams.edgerouting

EdgeRoutingPlugin() - Constructor for class org.vanted.plugins.layout.adaptagrams.edgerouting.EdgeRoutingPlugin

Initializes the edge routing plugin.

edges - Variable in class org.vanted.indexednodes.IndexedComponent

Edges - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.NodeOrEdge

edgesDistance - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.WorkSettings

EdgeShape - Interface in org.graffiti.plugin.view

DOCUMENT ME!

EdgeShapeAttribute - Class in org.graffiti.attributes

"Tagging" class only.

EdgeShapeAttribute(String, String) - Constructor for class org.graffiti.attributes.EdgeShapeAttribute

Creates a new EdgeShapeAttribute object.

EdgeShapeEditComponent - Class in org.graffiti.plugins.editcomponents.defaults

Class used to display different edge shapes.

EdgeShapeEditComponent(Displayable) - Constructor for class org.graffiti.plugins.editcomponents.defaults.EdgeShapeEditComponent

Constructor sets the correct entries for the combo box.

EdgeTab - Class in org.graffiti.plugins.inspectors.defaults

Represents a tabulator in the inspector, which handles the properties of edges.

EdgeTab() - Constructor for class org.graffiti.plugins.inspectors.defaults.EdgeTab

Constructs a EdgeTab and sets the title.

EditComponentManager - Class in org.graffiti.managers

Contains the mapping between displayable classes and their representation as AttributeComponent classes.

EditComponentManager() - Constructor for class org.graffiti.managers.EditComponentManager

Constructs an EditComponentManager.

EditComponentNotFoundException - Exception in org.graffiti.editor

Thrown if no EditComponent could be found.

EditComponentNotFoundException(String) - Constructor for exception org.graffiti.editor.EditComponentNotFoundException

Constructor for AttributeComponentNotFoundException.

EditorAlgorithm - Interface in org.graffiti.plugin.algorithm

EditorPlugin - Interface in org.graffiti.plugin

EditorPluginAdapter - Class in org.graffiti.plugin

Plugin for editor.

EditorPluginAdapter() - Constructor for class org.graffiti.plugin.EditorPluginAdapter

Constructor for EditorPluginAdapter.

EditorSession - Class in org.graffiti.session

Contains an editor session.

EditorSession() - Constructor for class org.graffiti.session.EditorSession

Constructs a new EditorSession with an empty graph instance.

EditorSession(Graph) - Constructor for class org.graffiti.session.EditorSession

Constructs a new EditorSession.

editPanel - Variable in class org.graffiti.plugin.inspector.InspectorTab

The panel that holds the table of the attributes and the buttons for adding and removing attributes as well as the "apply" button.

EditPanel - Class in org.graffiti.plugin.inspector

Represents the edit panel in the inspector.

EditPanel() - Constructor for class org.graffiti.plugin.inspector.EditPanel

editReactions(Reaction, Pathway, Collection<Gml2PathwayWarningInformation>, Collection<Gml2PathwayErrorInformation>, HashMap<Entry, Node>, Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionIdAttributeEditor

editReactions(GraphElement, String, Graph, Selection) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionIdAttributeEditor

EditRedoAction - Class in org.graffiti.editor.actions

Special class for redo capabilities.

EditRedoAction(MainFrame) - Constructor for class org.graffiti.editor.actions.EditRedoAction

Creates a new EditRedoAction object.

EditUndoAction - Class in org.graffiti.editor.actions

Special class for undo capabilities.

EditUndoAction(MainFrame) - Constructor for class org.graffiti.editor.actions.EditUndoAction

Creates a new EditUndoAction object.

EFFECT - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReaction

Effect3D - Interface in org.jfree.chart

An interface that should be implemented by renderers that use a 3D effect.

ELLIPSE - org.LabelFrameSetting

ELLIPSE_CLASSNAME - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants

ellipse node shape class name

EllipseNodeShape - Class in org.graffiti.plugins.views.defaults

Concrete class representing an ellipse.

EllipseNodeShape() - Constructor for class org.graffiti.plugins.views.defaults.EllipseNodeShape

EMPTY - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.TtestInfo

EMPTY - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants

EMPTY_STRING - Static variable in interface org.graffiti.plugin.editcomponent.ValueEditComponent

Preferred string to be displayed by edit components that have a showEmpty value of true.

emptyColor - Variable in class org.graffiti.plugins.editcomponents.defaults.ColorChooserEditComponent

DOCUMENT ME!

emptySetOf(Collection<Node>) - Static method in class org.vanted.indexednodes.IndexedNodeSet

Constructs an empty set with the given node collection as basic collection.

emptySubset() - Method in class org.vanted.indexednodes.IndexedNodeSet

Constructs an empty subset of this set of nodes.

EmptyXYDataset - Class in org.jfree.chart.demo

An empty dataset for testing purposes.

EmptyXYDataset() - Constructor for class org.jfree.chart.demo.EmptyXYDataset

Default constructor.

enable3d() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.random.RandomLayouterAlgorithm

enableContent(JComponent, boolean) - Static method in class org.graffiti.editor.GravistoService

enabled - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder3d

enableFeature(FeatureSet) - Static method in class org.ReleaseInfo

enableMouseClickProcessing() - Method in class org.jfree.chart.ChartPanel

enablePeriodicFreeMemory() - Method in interface org.graffiti.editor.MemoryHog

It sets up a Timer that would free memory after 1 minute passes by continuously during the life of the application.

enableSearch(boolean) - Method in class org.FolderPanel

encode(String) - Static method in class org.SettingsHelperDefaultIsTrue

ENCODE - Static variable in class org.graffiti.plugins.ios.exporters.graphml.Base64

Specify encoding.

ENCODE - Static variable in class org.graffiti.plugins.ios.importers.graphml.parser.Base64

Specify encoding.

encodeAsPNG(BufferedImage) - Static method in class org.jfree.chart.ChartUtilities

Encodes a BufferedImage to PNG format.

encodeAsPNG(BufferedImage, boolean, int) - Static method in class org.jfree.chart.ChartUtilities

Encodes a BufferedImage to PNG format.

encodeBadCharacters(Object) - Static method in class org.graffiti.plugins.ios.exporters.gml.GMLWriter

encodeBytes(byte[]) - Static method in class org.graffiti.plugins.ios.exporters.graphml.Base64

Encodes a byte array into Base64 notation.

encodeBytes(byte[]) - Static method in class org.graffiti.plugins.ios.importers.graphml.parser.Base64

Encodes a byte array into Base64 notation.

encodeBytes(byte[], int) - Static method in class org.graffiti.plugins.ios.exporters.graphml.Base64

Encodes a byte array into Base64 notation.

encodeBytes(byte[], int) - Static method in class org.graffiti.plugins.ios.importers.graphml.parser.Base64

Encodes a byte array into Base64 notation.

encodeBytes(byte[], int, int) - Static method in class org.graffiti.plugins.ios.exporters.graphml.Base64

Encodes a byte array into Base64 notation.

encodeBytes(byte[], int, int) - Static method in class org.graffiti.plugins.ios.importers.graphml.parser.Base64

Encodes a byte array into Base64 notation.

encodeBytes(byte[], int, int, int) - Static method in class org.graffiti.plugins.ios.exporters.graphml.Base64

Encodes a byte array into Base64 notation.

encodeBytes(byte[], int, int, int) - Static method in class org.graffiti.plugins.ios.importers.graphml.parser.Base64

Encodes a byte array into Base64 notation.

encodeObject(Serializable) - Static method in class org.graffiti.plugins.ios.exporters.graphml.Base64

Serializes an object and returns the Base64-encoded version of that serialized object.

encodeObject(Serializable) - Static method in class org.graffiti.plugins.ios.importers.graphml.parser.Base64

Serializes an object and returns the Base64-encoded version of that serialized object.

encodeObject(Serializable, int) - Static method in class org.graffiti.plugins.ios.exporters.graphml.Base64

Serializes an object and returns the Base64-encoded version of that serialized object.

encodeObject(Serializable, int) - Static method in class org.graffiti.plugins.ios.importers.graphml.parser.Base64

Serializes an object and returns the Base64-encoded version of that serialized object.

encrypt(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe.DesEncrypter

END - Static variable in class org.jfree.chart.axis.CategoryAnchor

End of period.

END - Static variable in class org.jfree.chart.axis.DateTickMarkPosition

End of period.

END - Static variable in class org.jfree.data.time.DynamicTimeSeriesCollection

Useful constant for controlling the x-value returned for a time period.

END - Static variable in class org.jfree.data.time.TimePeriodAnchor

End of period.

END - Static variable in class org.jfree.data.time.TimePeriodValuesCollection

Deprecated.

Replaced by TimePeriodAnchor.END.

END - Static variable in class org.jfree.data.time.TimeSeriesCollection

Useful constant for controlling the x-value returned for a time period.

endDocument() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLDelegatorHandler

Handle end document event.

endEdgeElement() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLContentHandler

Dynamically invoked by delegator handler.

endElement(String, String, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathXMLparser

endElement(String, String, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xlsx.SheetHandler

endElement(String, String, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLDelegatorHandler

Handle end tag event.

endElement(String, String, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLHandler

Pops the last item of the internal stack

endElement(String, String, String) - Method in class org.graffiti.plugins.ios.importers.graphml.parser.GraphMLFilter

Filter an end element event.

endElement(String, String, String) - Method in class org.jfree.data.xml.CategoryDatasetHandler

The end of an element.

endElement(String, String, String) - Method in class org.jfree.data.xml.CategorySeriesHandler

The end of an element.

endElement(String, String, String) - Method in class org.jfree.data.xml.ItemHandler

The end of an element.

endElement(String, String, String) - Method in class org.jfree.data.xml.KeyHandler

The end of an element.

endElement(String, String, String) - Method in class org.jfree.data.xml.PieDatasetHandler

The end of an element.

endElement(String, String, String) - Method in class org.jfree.data.xml.ValueHandler

The end of an element.

endNodeElement() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLContentHandler

Dynamically invoked by delegator handler.

endswith - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOperation

endTag_exists - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionEntry

energyOfNode(Node, double, double) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.CircleLayouterAlgorithm

EnhDoubleEditComponent - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.enhanced_attribute_editors

Represents a gui component, which handles double values.

EnhDoubleEditComponent(Displayable) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.enhanced_attribute_editors.EnhDoubleEditComponent

EnrichHiddenLabelsAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing

EnrichHiddenLabelsAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.EnrichHiddenLabelsAlgorithm

ENRICHMENT - org.graffiti.plugin.algorithm.Category

ENSEMBL - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter.QueryType

ENSEMBLID - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathMolecule

ensureActiveSession(MouseEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.DefaultContextMenuManager

ensureActiveSession(MouseEvent) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.IContextMenuManager

This Method should be called by the editing tools in the mouse entered event-handler.

ensureActiveViewAndSession(MouseEvent) - Static method in class org.graffiti.editor.GravistoService

ensureAtLeast(double, RectangleEdge) - Method in class org.jfree.chart.axis.AxisSpace

Ensures there is a minimum amount of space at the edge corresponding to the specified axis location.

ensureAtLeast(AxisSpace) - Method in class org.jfree.chart.axis.AxisSpace

Ensures that this object reserves at least as much space as another.

ensureCapacity(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

ensureCapacity(int) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface

ensureMinimumColorSelection(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttribute

ENTER_LONG - Static variable in interface org.jfree.data.SignalsDataset

Useful constant indicating trade recommendation.

ENTER_SHORT - Static variable in interface org.jfree.data.SignalsDataset

Useful constant indicating trade recommendation.

EntityCollection - Interface in org.jfree.chart.entity

Defines the methods that a collection of entities is required to implement.

ENTREZGENEID - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathMolecule

Entry - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml

Entry(Id, KeggId, EntryType, Url, IdRef, Collection<KeggId>, Collection<IdRef>, Graphics) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Entry

ENTRY_FOR_PRODUCT_NOT_FOUND - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayError

ENTRY_FOR_RELATION_NOT_FOUND - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayError

ENTRY_FOR_SUBSTRATE_NOT_FOUND - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayError

EntryType - Enum in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes

enumerateAllAttributes(ArrayList<AttributePathNameSearchType>, Graph, HashSet<SearchType>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchAndSelecAlgorithm

enumerateAttributes(ArrayList<AttributePathNameSearchType>, Collection<?>, HashSet<SearchType>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchAndSelecAlgorithm

enumerateAttributes(ArrayList<AttributePathNameSearchType>, Attributable, HashSet<SearchType>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchAndSelecAlgorithm

enumerateChildNodeEnzymes() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.special.EnzymeStatisticInformation

enumerateExistingAlternativeSubstanceIDsAndTheirExamples(Collection<? extends GraphElement>, int, HashMap<Integer, String>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.ReplaceLabelFromAlternativeSubstanceNames

enumerateNodePositions(Graph, HashMap<CoordinateAttribute, Vector2d>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

enumerateNodePositions3d(Graph, HashMap<CoordinateAttribute, Vector3d>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

EnumParameter - Class in org.graffiti.plugin.parameter

EnumParameter(Enum<?>, String, String) - Constructor for class org.graffiti.plugin.parameter.EnumParameter

EnzClassEntry - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes

EnzClassEntry(EnzClassEntry) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzClassEntry

EnzClassEntry(String, String, String, String, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzClassEntry

enzyme - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.EntryType

ENZYME - de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggDatabases

ENZYME - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReaction

EnzymeEntry - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes

EnzymeEntry() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeEntry

EnzymeService - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes

EnzymeStatisticInformation - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.special

EnzymeStatisticInformation(Node) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.special.EnzymeStatisticInformation

EOF - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

EOF_sym() - Method in class org.graffiti.plugins.ios.importers.gml.parser

EOF Symbol index.

epsilon - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.LineModeSetting

epsilon - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics

EQUAL_PATH - org.graffiti.event.PathComparisonResult

equals - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOperation

equals(Object) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KoEntry

equals(Object) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeEntry

equals(Object) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition

equals(Object) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface

equals(Object) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingId

equals(Object) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader

equals(Object) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface

equals(Object) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample

equals(Object) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface

equals(Object) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance

equals(Object) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.SimpleModel

Indicates whether some other object is "equal to" this one.

equals(Object) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DataRowExcelExport

equals(Object) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.NodeCombination

equals(Object) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.ReactionIDSpeciesIDWrapper

equals(Object) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.SessionLinkInfo

equals(Object) - Method in class org.graffiti.graphics.Dash

equals(Object) - Method in class org.graffiti.graphics.Port

equals(Object) - Method in class org.graffiti.graphics.PortAttribute

equals(Object) - Method in class org.graffiti.util.Pair

equals(Object) - Method in class org.jfree.chart.annotations.CategoryTextAnnotation

Tests this object for equality with another.

equals(Object) - Method in class org.jfree.chart.annotations.TextAnnotation

Tests this object for equality with another object.

equals(Object) - Method in class org.jfree.chart.annotations.XYDrawableAnnotation

Tests this annotation for equality with an object.

equals(Object) - Method in class org.jfree.chart.annotations.XYImageAnnotation

Tests this object for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.annotations.XYLineAnnotation

Tests this object for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.annotations.XYPointerAnnotation

Tests this annotation for equality with an object.

equals(Object) - Method in class org.jfree.chart.axis.Axis

Tests this axis for equality with another object.

equals(Object) - Method in class org.jfree.chart.axis.AxisLocation

Returns true if this object is equal to the specified object, and false otherwise.

equals(Object) - Method in class org.jfree.chart.axis.AxisSpace

Tests this object for equality with another object.

equals(Object) - Method in class org.jfree.chart.axis.CategoryAnchor

Returns true if this object is equal to the specified object, and false otherwise.

equals(Object) - Method in class org.jfree.chart.axis.CategoryAxis

Tests this axis for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.axis.CategoryLabelPosition

Tests an object for equality with this instance.

equals(Object) - Method in class org.jfree.chart.axis.CategoryLabelPositions

Returns true if this object is equal to the specified object, and false otherwise.

equals(Object) - Method in class org.jfree.chart.axis.CategoryLabelWidthType

Returns true if this object is equal to the specified object, and false otherwise.

equals(Object) - Method in class org.jfree.chart.axis.CategoryTick

Tests this category tick for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.axis.ColorBar

Tests this object for equality with another.

equals(Object) - Method in class org.jfree.chart.axis.CyclicNumberAxis

Tests the axis for equality with another object.

equals(Object) - Method in class org.jfree.chart.axis.DateAxis

Tests an object for equality with this instance.

equals(Object) - Method in class org.jfree.chart.axis.DateTick

Tests this tick for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.axis.DateTickMarkPosition

Returns true if this object is equal to the specified object, and false otherwise.

equals(Object) - Method in class org.jfree.chart.axis.DateTickUnit

Tests this unit for equality with another object.

equals(Object) - Method in class org.jfree.chart.axis.MarkerAxisBand

Tests this axis for equality with another object.

equals(Object) - Method in class org.jfree.chart.axis.NumberAxis

Tests an object for equality with this instance.

equals(Object) - Method in class org.jfree.chart.axis.SegmentedTimeline

Returns true if we are equal to the parameter

equals(Object) - Method in class org.jfree.chart.axis.SegmentedTimeline.Segment

Tests an object (usually another Segment) for equality with this segment.

equals(Object) - Method in class org.jfree.chart.axis.SubCategoryAxis

Tests the axis for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.axis.Tick

Tests this tick for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.axis.TickUnit

Tests this unit for equality with another object.

equals(Object) - Method in class org.jfree.chart.axis.TickUnits

Tests an object for equality with this instance.

equals(Object) - Method in class org.jfree.chart.axis.ValueAxis

Tests the axis for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.axis.ValueTick

Tests this tick for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.ChartRenderingInfo

Tests this object for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.entity.CategoryItemEntity

Tests the entity for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.entity.ChartEntity

Tests the entity for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.entity.ContourEntity

Tests the entity for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.entity.LegendItemEntity

Tests this object for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.entity.StandardEntityCollection

Tests this object for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.entity.XYItemEntity

Tests the entity for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.JFreeChart

Tests this chart for equality with another object.

equals(Object) - Method in class org.jfree.chart.labels.AbstractCategoryItemLabelGenerator

Tests this object for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.labels.AbstractXYItemLabelGenerator

Tests this object for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.labels.BoxAndWhiskerToolTipGenerator

Tests if this object is equal to another.

equals(Object) - Method in class org.jfree.chart.labels.BoxAndWhiskerXYToolTipGenerator

Tests if this object is equal to another.

equals(Object) - Method in class org.jfree.chart.labels.CustomXYToolTipGenerator

Tests if this object is equal to another.

equals(Object) - Method in class org.jfree.chart.labels.HighLowItemLabelGenerator

Tests if this object is equal to another.

equals(Object) - Method in class org.jfree.chart.labels.ItemLabelAnchor

Returns true if this object is equal to the specified object, and false otherwise.

equals(Object) - Method in class org.jfree.chart.labels.ItemLabelPosition

Tests this object for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.labels.StandardContourToolTipGenerator

Tests if this object is equal to another.

equals(Object) - Method in class org.jfree.chart.labels.StandardPieItemLabelGenerator

Tests the generator for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.labels.StandardXYLabelGenerator

Tests this object for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.labels.StandardXYToolTipGenerator

Tests this object for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.labels.StandardXYZToolTipGenerator

Tests this object for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.labels.SymbolicXYItemLabelGenerator

Tests if this object is equal to another.

equals(Object) - Method in class org.jfree.chart.Legend

Tests this legend for equality with another object.

equals(Object) - Method in class org.jfree.chart.LegendItem

Tests this item for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.LegendRenderingOrder

Returns true if this object is equal to the specified object, and false otherwise.

equals(Object) - Method in class org.jfree.chart.needle.ArrowNeedle

Tests another object for equality with this object.

equals(Object) - Method in class org.jfree.chart.needle.LineNeedle

Tests another object for equality with this object.

equals(Object) - Method in class org.jfree.chart.needle.LongNeedle

Tests another object for equality with this object.

equals(Object) - Method in class org.jfree.chart.needle.MeterNeedle

Tests another object for equality with this object.

equals(Object) - Method in class org.jfree.chart.needle.PinNeedle

Tests another object for equality with this object.

equals(Object) - Method in class org.jfree.chart.needle.PlumNeedle

Tests another object for equality with this object.

equals(Object) - Method in class org.jfree.chart.needle.PointerNeedle

Tests another object for equality with this object.

equals(Object) - Method in class org.jfree.chart.needle.ShipNeedle

Tests another object for equality with this object.

equals(Object) - Method in class org.jfree.chart.needle.WindNeedle

Tests another object for equality with this object.

equals(Object) - Method in class org.jfree.chart.plot.CategoryPlot

Tests the plot for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.plot.CombinedDomainCategoryPlot

Tests the plot for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.plot.CombinedDomainXYPlot

Tests this plot for equality with another object.

equals(Object) - Method in class org.jfree.chart.plot.CombinedRangeCategoryPlot

Tests the plot for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.plot.CombinedRangeXYPlot

Tests this plot for equality with another object.

equals(Object) - Method in class org.jfree.chart.plot.CompassPlot

Tests an object for equality with this plot.

equals(Object) - Method in class org.jfree.chart.plot.DatasetRenderingOrder

Returns true if this object is equal to the specified object, and false otherwise.

equals(Object) - Method in class org.jfree.chart.plot.DefaultDrawingSupplier

Tests this object for equality with another object.

equals(Object) - Method in class org.jfree.chart.plot.DialShape

Returns true if this object is equal to the specified object, and false otherwise.

equals(Object) - Method in class org.jfree.chart.plot.FastScatterPlot

Tests an object for equality with this instance.

equals(Object) - Method in class org.jfree.chart.plot.Marker

Tests an object for equality with this instance.

equals(Object) - Method in class org.jfree.chart.plot.MeterPlot

Tests the plot for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.plot.PiePlot

Tests this plot for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.plot.Plot

Tests this plot for equality with another object.

equals(Object) - Method in class org.jfree.chart.plot.PlotOrientation

Returns true if this object is equal to the specified object, and false otherwise.

equals(Object) - Method in class org.jfree.chart.plot.PlotRenderingInfo

Tests this instance for equality against an arbitrary object.

equals(Object) - Method in class org.jfree.chart.plot.PolarPlot

Tests this plot for equality with another object.

equals(Object) - Method in class org.jfree.chart.plot.ThermometerPlot

Tests this plot for equality with another object.

equals(Object) - Method in class org.jfree.chart.plot.XYPlot

Tests this plot for equality with another object.

equals(Object) - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer

Tests this renderer for equality with another object.

equals(Object) - Method in class org.jfree.chart.renderer.AbstractRenderer

Tests this renderer for equality with another object.

equals(Object) - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer

Tests this renderer for equality with another object.

equals(Object) - Method in class org.jfree.chart.renderer.AreaRendererEndType

Returns true if this object is equal to the specified object, and false otherwise.

equals(Object) - Method in class org.jfree.chart.renderer.BarRenderer

Tests this instance for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.renderer.BoxAndWhiskerRenderer

Tests this renderer for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.renderer.CandlestickRenderer

Tests this renderer for equality with another object.

equals(Object) - Method in class org.jfree.chart.renderer.CategoryURLGeneratorTable

Deprecated.

Tests this paint table for equality with another object (typically another label generator table).

equals(Object) - Method in class org.jfree.chart.renderer.LevelRenderer

Tests an object for equality with this instance.

equals(Object) - Method in class org.jfree.chart.renderer.LineAndShapeRenderer

Tests this renderer for equality with another object.

equals(Object) - Method in class org.jfree.chart.renderer.RangeType

Returns true if this object is equal to the specified object, and false otherwise.

equals(Object) - Method in class org.jfree.chart.renderer.StandardXYItemRenderer

Tests this renderer for equality with another object.

equals(Object) - Method in class org.jfree.chart.renderer.WaterfallBarRenderer

Tests an object for equality with this instance.

equals(Object) - Method in class org.jfree.chart.renderer.XYBoxAndWhiskerRenderer

Tests this renderer for equality with another object.

equals(Object) - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer

Tests this renderer for equality with another object.

equals(Object) - Method in class org.jfree.chart.StandardLegend

Tests an object for equality with this legend.

equals(Object) - Method in class org.jfree.chart.title.TextTitle

Tests this title for equality with another object.

equals(Object) - Method in class org.jfree.chart.title.Title

Tests an object for equality with this title.

equals(Object) - Method in class org.jfree.chart.ui.ColorPalette

Tests an object for equality with this instance.

equals(Object) - Method in class org.jfree.chart.urls.CustomPieURLGenerator

Tests if this object is equal to another.

equals(Object) - Method in class org.jfree.chart.urls.CustomXYURLGenerator

Tests if this object is equal to another.

equals(Object) - Method in class org.jfree.chart.urls.StandardCategoryURLGenerator

Tests the generator for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.chart.urls.StandardPieURLGenerator

Tests if this object is equal to another.

equals(Object) - Method in class org.jfree.chart.urls.StandardXYURLGenerator

Tests this generator for equaliaty with an arbitrary object.

equals(Object) - Method in class org.jfree.data.DefaultCategoryDataset

Tests if this object is equal to another.

equals(Object) - Method in class org.jfree.data.DefaultKeyedValue

Tests if this object is equal to another.

equals(Object) - Method in class org.jfree.data.DefaultKeyedValueDataset

Tests this dataset for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.data.DefaultKeyedValues

Tests if this object is equal to another.

equals(Object) - Method in class org.jfree.data.DefaultKeyedValues2D

Tests if this object is equal to another.

equals(Object) - Method in class org.jfree.data.DefaultPieDataset

Tests if this object is equal to another.

equals(Object) - Method in class org.jfree.data.DefaultTableXYDataset

Tests this collection for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.data.DefaultValueDataset

Tests this dataset for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.data.KeyedObject

Tests if this object is equal to another.

equals(Object) - Method in class org.jfree.data.KeyedObjects

Tests if this object is equal to another.

equals(Object) - Method in class org.jfree.data.KeyedObjects2D

Tests this object for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.data.KeyedValueComparatorType

Returns true if this object is equal to the specified object, and false otherwise.

equals(Object) - Method in class org.jfree.data.KeyToGroupMap

Tests the map for equality against an arbitrary object.

equals(Object) - Method in class org.jfree.data.MatrixSeries

Tests this object instance for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.data.MatrixSeriesCollection

Tests this collection for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.data.Range

Tests this object for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.data.Series

Tests the series for equality with another object.

equals(Object) - Method in class org.jfree.data.statistics.BoxAndWhiskerItem

Tests this object for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerCategoryDataset

Tests this dataset for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.data.statistics.HistogramBin

Tests this object for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.data.statistics.HistogramDataset

Tests this dataset for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.data.statistics.HistogramType

Tests this type for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.data.time.Day

Tests the equality of this Day object to an arbitrary object.

equals(Object) - Method in class org.jfree.data.time.FixedMillisecond

Tests the equality of this object against an arbitrary Object.

equals(Object) - Method in class org.jfree.data.time.Hour

Tests the equality of this object against an arbitrary Object.

equals(Object) - Method in class org.jfree.data.time.Millisecond

Tests the equality of this object against an arbitrary Object.

equals(Object) - Method in class org.jfree.data.time.Minute

Tests the equality of this object against an arbitrary Object.

equals(Object) - Method in class org.jfree.data.time.Month

Tests the equality of this Month object to an arbitrary object.

equals(Object) - Method in class org.jfree.data.time.Quarter

Tests the equality of this Quarter object to an arbitrary object.

equals(Object) - Method in class org.jfree.data.time.Second

Tests the equality of this object against an arbitrary Object.

equals(Object) - Method in class org.jfree.data.time.SimpleTimePeriod

Returns true if this time period is equal to another object, and false otherwise.

equals(Object) - Method in class org.jfree.data.time.TimePeriodAnchor

Returns true if this object is equal to the specified object, and false otherwise.

equals(Object) - Method in class org.jfree.data.time.TimePeriodValue

Tests this object for equality with the target object.

equals(Object) - Method in class org.jfree.data.time.TimePeriodValues

Tests the series for equality with another object.

equals(Object) - Method in class org.jfree.data.time.TimeSeries

Tests the series for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.data.time.TimeSeriesCollection

Tests this time series collection for equality with another object.

equals(Object) - Method in class org.jfree.data.time.TimeSeriesDataItem

Tests this object for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.data.time.Week

Tests the equality of this Week object to an arbitrary object.

equals(Object) - Method in class org.jfree.data.time.Year

Tests the equality of this Year object to an arbitrary object.

equals(Object) - Method in class org.jfree.data.XYDataItem

Tests if this object is equal to another.

equals(Object) - Method in class org.jfree.data.XYSeries

Tests this series for equality with an arbitrary object.

equals(Object) - Method in class org.jfree.data.XYSeriesCollection

Tests this collection for equality with an arbitrary object.

equals(Object) - Method in class org.vanted.LookAndFeelNameAndClass

equationTag_exists - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionEntry

ErdosRenyiGraphGenerator - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation

Algorithm to generate an Erdos Renyi random network of n nodes, using p edge probability.

ErdosRenyiGraphGenerator() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.ErdosRenyiGraphGenerator

error - Static variable in class org.graffiti.plugins.ios.importers.gml.sym

error(SAXParseException) - Method in class org.graffiti.managers.pluginmgr.PluginXMLParserErrorHandler

Error Event Handler.

Error - de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.AddOnInstallResult

ERROR - org.graffiti.editor.MessageType

ERROR_NUMBER - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DataColumnHeader

error_sym() - Method in class org.graffiti.plugins.ios.importers.gml.parser

error Symbol index.

errorMessagesMenuTitle - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_dbe.MenuItemInfoDialog

errorMessagesMenuTitle - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_example.MenuItemInfoDialog

Deprecated.

ErrorMsg - Class in org

ErrorMsg() - Constructor for class org.ErrorMsg

eudist - Variable in class qmwi.kseg.som.Map

evaluateAndUpdateGraph(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.EvaluateKGML

EvaluateKGML - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools

EvaluateKGML() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.EvaluateKGML

EVENT_ASSIGNMENT - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants

EVENT_ID - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants

EVENT_NAME - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants

EventFrequencyDemo - Class in org.jfree.chart.demo

A demo application showing how to display category data against a date axis.

EventFrequencyDemo(String) - Constructor for class org.jfree.chart.demo.EventFrequencyDemo

Creates a new demo.

EVIDENCE - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReaction

EXCEL_OR_BINARY_DESCRIPTION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.OpenExcelFileDialogService

EXCEL_OR_BINARY_EXTENSION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.OpenExcelFileDialogService

EXCELFILE_EXTENSIONS - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.OpenExcelFileDialogService

exchangeGuiComponentRow(GuiRow, GuiRow, boolean) - Method in class org.FolderPanel

ExchangeNodePositionsAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview

ExchangeNodePositionsAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.ExchangeNodePositionsAlgorithm

exchangePositions(List<Node>, NodeSortCommand, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

exchangePositionsNHL(List<NodeHelper>, NodeSortCommand, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.circle_search.CircleSearchAndLayoutAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping.DataMapping

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.ColorizeAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.DavidTestAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.GrubbsTestAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.ShowStatisticsTab

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.BarabasiAlbertGraphGenerator

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.ErdosRenyiGraphGenerator

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.WattsStrogatzGraphGenerator

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.HammingDistanceAlgorithm

The main method

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.inverse_graph.InverseGraphPluginAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.lines_as_substances.LinesToSubstancesAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.NaivePatternFinderAlgorithm

Performs the matching of the target graph with all pattern graphs.

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.ExchangeNodePositionsAlgorithm

It swaps node positions in counter-clockwise direction.

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.RatioViewAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.SubstanceRatioCalculationAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.AllPathsSelectionAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.ShortestPathSelectionAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.WeightedShortestPathSelectionAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.MultiDataView

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMclusterAnalysis

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMclusterAnalysisDoCluster

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMprintDataset

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.commands.TranspathPathwayLoader

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.ImageAssignmentCommand

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.AddDiagramLegendAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.ColorScaleLegendAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.CreateDistanceMatrixAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.ExtractMappingDataAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.RecolorEdgesAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.RemoveMappingDataAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.SetNumericAttributeFromDataAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.alt_id_statistics.AlternativeIDannotationStatistics

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.CombineMappingData

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.CreateFuncatGraphAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.ClusterHistogramFisherTest

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateDirectChildrenClustersHistogramAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateGOchildrenAverageDataDiagramAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateGOchildrenClustersHistogramAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateGOchildrenTtestHistogramAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.PruneTreeAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.CreateGOtreeAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.InterpreteGOtermsAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.InterpreteParentGOtermsAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.hierarchies.CreateKEGGOrthologyGraphAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.kegg_reaction.CreateKeggReactionNetworkAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.hierarchy.HierarchyWizard

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.MergeNodes

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.ReplaceDiagramTitleFromAlternativeSubstanceNames

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectCompoundsAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectEdgesAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectEnzymesAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectGenesAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectMapNodesAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectMapTitleNodesAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectNodesWithExperimentalDataAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectReactionsAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.ShowOrHideImageAttributesAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.SplitNodeForSingleMappingData

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.UserMappingAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.BSHscriptMenuEntry

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.CloseAllWindows

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.EvaluateKGML

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.RecreateView

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.ColorizeSuperGraphAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.CreateOrgSpecificSuperGraphsAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.MergeWindowsAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.SelectWindowsAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.launch_gui.LaunchGui

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.AbstractExperimentDataProcessor

Should not be overridden, only in case processData() uses a background thread.

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate.RotateAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color.SetBackgroundColorAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color.WindowSettings

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.startlayout.StartLayoutAlgorithm

Performs the layout.

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph.ApplyGraphLayout

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph.ShowLayoutTab

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.CircleLayouterAlgorithm

Performs the layout.

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.CircleLayouterWithMinimumCrossingsAlgorithm

Performs the layout.

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.CountCircularCrossingsAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.DotLayoutAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.NullLayoutAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.connected_components.ConnectedComponentLayout

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.copy_pattern_layout.CopyPatternLayoutAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_no_overlapp.NoOverlappLayoutAlgorithm

Performs the layout.

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_reduce_space.ExpandReduceLayouterAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fd_edge_routing.ForceDirectedEdgeLayout

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fish_eye.FishEyeLayout

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.graph_to_origin_mover.CenterLayouterAlgorithm

DOCTODO: Include method header

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.graph_to_origin_mover.NoOverlappOfClustersAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement.GridPlacementAlgorithm

Performs the layout.

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement.IterateGridPlacementLayout

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid.GridLayouterAlgorithm

Computes node coordinates and sets these coordinates

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.no_overlapp_as_tim.NoOverlappLayoutAlgorithmAS

Performs the layout.

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache.PatternSpringembedder

Layout Algorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.AddRandomClusterInformationAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BringToFrontOrBackAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BundleParallelEdges

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ClusterGraphLayout

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ClusterIndividualLayout

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.CreateClusterGraphAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.DuplicateEdge

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.IntroduceBendsAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.IntroduceParallelEdgeBends

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.IntroduceSelfEdgeBends

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.PajekClusterColor

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.RemoveBendsAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.RemoveParallelEdges

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ResetEdgeSourceOrTarget

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ResizeNodesDepDegreeAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SelectClusterAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SetClusterInfoAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SetClusterInfoFromLabelAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SetClusterInfoFromSubgraphAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ShowClusterGraphAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SortIntoCluster

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder

Layout Algorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder3d

Layout Algorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.radial_tree.RadialTreeLayout

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.random.RandomLayouterAlgorithm

Performs the layout.

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.ArrayLayout

Computes node coordinates and sets these coordinates

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.GridLayoutAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.ResizeFromMappingCountLayoutAlgorithm

Computes node coordinates and sets these coordinates

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.MultiTreeLayout

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.RTTreeLayout

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.springembedder_1.SpringEmbedderAlgorithm

Layout Algorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.tree_simple.GraphTreeLayout

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.AddInterestingAttributes

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.CalculateAttribute

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup.DeleteNodesAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup.NumberNodesAndEdgesAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.HideOrShowChildNodes

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.HierarchyAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.SelectLeafNodesAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ChangeEdgeStyle

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ChangeElementStyle

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ChangeNodeStyle

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ClearSelection

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.CopyDataTableAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ExpandSelectionAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ExportDataTableAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.FindReplaceDialog

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.InvertSelectionAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.RemoveSelectedNodesPreserveEdgesAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchAndSelecAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SetToolTipAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SetURLAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.EnrichHiddenLabelsAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.RemoveHiddenLabelsAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.RemoveParenthesisLabels

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.ReplaceLabelAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.RestoreLabelAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayReferenceAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayReferenceAutoCreationAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.ppt_exporter.PPTAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.printer.PrintAlgorithm

This method is invoked by the plugin environment to start the action this plugin is for.

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.AdditionalIdentifiersAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.ReplaceLabelFromAlternativeSubstanceNames

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.scripting.BeanShellDesktopAlgorithm

Starts the Bean Shell Desktop.

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PDFAlgorithm

This method is called by the plugin environment to start the action this plugin is for.

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PDFSVGAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SVGAlgorithm

execute() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.WebsiteGeneration

execute() - Method in class org.graffiti.plugin.algorithm.AbstractAnimatedAlgorithm

Executes the whole algorithm as one big step.

execute() - Method in interface org.graffiti.plugin.algorithm.Algorithm

Executes the whole algorithm.

execute() - Method in class org.graffiti.undo.AddEdgeEdit

execute() - Method in class org.graffiti.undo.AddNodeEdit

execute() - Method in class org.graffiti.undo.ChangeAttributesEdit

execute() - Method in class org.graffiti.undo.GraffitiAbstractUndoableEdit

Executes action for corresponding tools.

execute() - Method in class org.graffiti.undo.GraphElementsDeletionEdit

Executes the deletion of selected grpah elements

execute() - Method in class org.vanted.plugins.layout.adaptagrams.edgerouting.EdgeRoutingAlgorithm

execute() - Method in class org.vanted.plugins.layout.multilevelframework.ForceDirectedLayoutWrapper

execute() - Method in class org.vanted.plugins.layout.multilevelframework.MultilevelFrameworkLayout

Performs the layout.

execute() - Method in class org.vanted.plugins.layout.stressminimization.BackgroundExecutionAlgorithm

execute() - Method in class org.vanted.plugins.layout.stressminimization.StressMinimizationLayout

Executes the whole algorithm.

execute(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.ppt_exporter.PPTAlgorithm

execute(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SVGAlgorithm

execute(Graph) - Method in interface org.graffiti.plugin.algorithm.AnimatedAlgorithm

Executes the whole algorithm as one big step.

execute(Graph) - Method in class org.vanted.plugins.layout.multilevelframework.LayoutAlgorithmWrapper

Execute the algorithm, assuming an empty selection

execute(Graph, String, String, int, ObjectRef, ImageFileResultProcessor) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithm

execute(Graph, Selection) - Method in class org.vanted.plugins.layout.multilevelframework.LayoutAlgorithmWrapper

Execute the layout algorithm with the given Graph and Selection.

executeAndReturnGraph(BackgroundTaskStatusProviderSupportingExternalCall) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.SubstanceRatioCalculationAlgorithm

executeAndReturnGraph(BackgroundTaskStatusProviderSupportingExternalCall, boolean, boolean, boolean, NodeSortCommand, String, String, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.RatioViewAlgorithm

executeBackgroundAlgorithm() - Method in class org.vanted.plugins.layout.stressminimization.BackgroundExecutionAlgorithm

Starts new thread which executes the BackgroundAlgorithm and starts the progress bar

executeClusterColoringOnGraph(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.PajekClusterColor

Colour clusters based on the stored ClusterColorAttribute for the graph.

executeClusterColoringOnGraph(Graph, ClusterColorAttribute) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.PajekClusterColor

executeClusterColoringOnGraph(Graph, Collection<String>, ClusterColorAttribute) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.PajekClusterColor

executeLaterOnSwingTask(int, Runnable) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskHelper

executeQuery(String) - Method in class org.jfree.data.JDBCCategoryDataset

Populates the dataset by executing the supplied query against the existing database connection.

executeQuery(String) - Method in class org.jfree.data.JDBCPieDataset

ExecuteQuery will attempt execute the query passed to it against the existing database connection.

executeQuery(String) - Method in class org.jfree.data.JDBCXYDataset

ExecuteQuery will attempt execute the query passed to it against the existing database connection.

executeQuery(Connection, String) - Method in class org.jfree.data.JDBCCategoryDataset

Populates the dataset by executing the supplied query against the existing database connection.

executeQuery(Connection, String) - Method in class org.jfree.data.JDBCPieDataset

ExecuteQuery will attempt execute the query passed to it against the existing database connection.

executeQuery(Connection, String) - Method in class org.jfree.data.JDBCXYDataset

ExecuteQuery will attempt execute the query passed to it against the provided database connection.

executeScript(BSHinfo, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.BSHscriptMenuEntry

executeThreadSafe(Runnable) - Method in class org.graffiti.plugin.algorithm.ThreadSafeOptions

executeThreadSafe(ThreadSafeOptions) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate.RotateAlgorithm

executeThreadSafe(ThreadSafeOptions) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache.PatternSpringembedder

executeThreadSafe(ThreadSafeOptions) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder

executeThreadSafe(ThreadSafeOptions) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder3d

executeThreadSafe(ThreadSafeOptions) - Method in class org.graffiti.plugin.algorithm.ThreadSafeAlgorithm

executeThreadSafe(ThreadSafeOptions) - Method in class org.vanted.plugins.layout.multilevelframework.ForceDirectedLayoutWrapper

executeThreadSafe(ThreadSafeOptions) - Method in class org.vanted.plugins.layout.multilevelframework.MultilevelFrameworkLayout

executeThreadSafe(ThreadSafeOptions) - Method in class org.vanted.plugins.layout.stressminimization.BackgroundExecutionAlgorithm

executeWithoutResize() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.GridLayoutAlgorithm

Computes node coordinates and sets these coordinates

executeWithResize() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.GridLayoutAlgorithm

existsEdge(Node, Node) - Method in class org.graffiti.util.GeneralUtils

True iff any edge between n1 (source) and n2 (target) exists.

EXIT_COMMAND - Static variable in class org.jfree.chart.demo.JFreeChartDemo

Exit action command.

EXIT_LONG - Static variable in interface org.jfree.data.SignalsDataset

Useful constant indicating trade recommendation.

EXIT_SHORT - Static variable in interface org.jfree.data.SignalsDataset

Useful constant indicating trade recommendation.

ExitAction - Class in org.graffiti.editor.actions

Exits the editor.

ExitAction(MainFrame) - Constructor for class org.graffiti.editor.actions.ExitAction

Creates a new ExitAction object.

expand(Rectangle2D, Rectangle2D) - Method in class org.jfree.chart.axis.AxisSpace

Expands an area by the amount of space represented by this object.

expand(Range, double, double) - Static method in class org.jfree.data.Range

Creates a new range by adding margins to an existing range.

expandClasspathByJarfile(URL[]) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.AddonManagerPlugin

Expands the classloader by the Add-on jarfile.

ExpandReduceLayouterAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_reduce_space

Transforms the layout by doing a calculation like x=x*1.4 and y=y*1.4 for the nodes and bends positions.

ExpandReduceLayouterAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_reduce_space.ExpandReduceLayouterAlgorithm

ExpandReduceLayouterPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_reduce_space

ExpandReduceLayouterPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_reduce_space.ExpandReduceLayouterPlugin

Creates a new CircleLayouterPlugin object.

ExpandSelectionAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection

Labels all selected nodes with unique numbers.

ExpandSelectionAlgorithm(boolean, boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ExpandSelectionAlgorithm

Constructs a new instance.

Experiment - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper

Experiment() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

Experiment(ExperimentInterface) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

Experiment(SubstanceInterface) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

Experiment(List<SubstanceInterface>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

Experiment(Document) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment

Experiment2GraphHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes

Experiment2GraphHelper() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.Experiment2GraphHelper

ExperimentConstructor - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper

ExperimentConstructor() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentConstructor

ExperimentData - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe

ExperimentData() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentData

ExperimentDataAnnotation - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe

ExperimentDataAnnotation() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation

ExperimentDataAnnotationManager - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe

ExperimentDataDragAndDropHandler - Interface in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart

ExperimentDataFileReader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe

ExperimentDataFileReader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataFileReader

ExperimentDataFileWriter - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe

ExperimentDataInfoPane - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe

ExperimentDataInfoPane(TableData, ExperimentInterface, JTabbedPane, List<ExperimentDataInfoPane>, JComponent) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataInfoPane

ExperimentDataPresenter - Interface in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe

Receives experimental data and adds it to the GUI (e.g.

ExperimentDataProcessingManager - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe

ExperimentDataProcessingManager() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataProcessingManager

ExperimentDataProcessor - Interface in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe

ExperimentDataReceiver - Interface in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe

Deprecated.

ExperimentHeader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper

ExperimentHeader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader

ExperimentHeader(ConditionInterface) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader

ExperimentHeader(ExperimentHeaderInterface) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader

ExperimentHeader(String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader

ExperimentHeader(Map<String, Object>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader

ExperimentHeaderInterface - Interface in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper

ExperimentInterface - Interface in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper

ExperimentLoader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe

ExperimentLoader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentLoader

experimentName - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow

EXPORT - org.graffiti.plugin.algorithm.Category

ExportDataTableAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection

ExportDataTableAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ExportDataTableAlgorithm

expression - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.SubtypeName

EXTENDED_FILE_FORMAT - org.FeatureSet

ExtendedCategoryAxis - Class in org.jfree.chart.axis

An extended version of the CategoryAxis class that supports sublabels on the axis.

ExtendedCategoryAxis(String) - Constructor for class org.jfree.chart.axis.ExtendedCategoryAxis

Creates a new axis.

ExtendedStackedBarRenderer - Class in org.jfree.chart.demo

An extension of the StackedBarRenderer that can draw positive and negative totals at the top and bottom of the stacked bars.

ExtendedStackedBarRenderer() - Constructor for class org.jfree.chart.demo.ExtendedStackedBarRenderer

Creates a new renderer.

Extension - Interface in org.graffiti.plugin.extension

EXTENT_UNITS - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants

extraColumns - Variable in class qmwi.kseg.som.diagram.DiagrammPaneData

extractECId(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeService

extractKeggKOId(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggBriteService

ExtractMappingDataAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms

ExtractMappingDataAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.ExtractMappingDataAlgorithm

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _
All Classes|All Packages