P-Index (Vanted 2.8.3 API)

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _
All Classes|All Packages

P

pack() - Method in class org.graffiti.editor.dialog.DefaultParameterDialog
paint(Graphics) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartAttributeComponent
paint(Graphics) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundImageAttributeComponent
paint(Graphics) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyColorGrid
paint(Graphics) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKGraffitiView
paint(Graphics) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.Star
paint(Graphics) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.JTreeTable.TreeTableCellRenderer
paint(Graphics) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayLinkVisualizationComponent
paint(Graphics) - Method in class org.graffiti.editor.ShowImage
paint(Graphics) - Method in class org.graffiti.plugin.attributecomponent.AbstractAttributeComponent
paint(Graphics) - Method in class org.graffiti.plugins.attributecomponents.simplelabel.LabelComponent
paint(Graphics) - Method in class org.graffiti.plugins.attributecomponents.simplelabel.ViewLabel
paint(Graphics) - Method in class org.graffiti.plugins.modes.defaults.SelectionRectangle
paintBorder(Component, Graphics, int, int, int, int) - Method in class org.graffiti.plugin.tool.EdgeBorder: Paints the border.
paintBorder(Component, Graphics, int, int, int, int) - Method in class org.graffiti.plugin.tool.NodeBorder: Paints the border.
paintComponent(Graphics) - Method in class org.graffiti.plugin.attributecomponent.AbstractAttributeComponent
paintComponent(Graphics) - Method in class org.graffiti.plugin.view.GraphElementComponent: Paints the graph element contained in this component.
paintComponent(Graphics) - Method in class org.graffiti.plugins.inspectors.defaults.InspectorContainer: DOCUMENT ME!
paintComponent(Graphics) - Method in class org.graffiti.plugins.views.defaults.AbstractGraphElementComponent: Paints the graph element contained in this component.
paintComponent(Graphics) - Method in class org.jfree.chart.ChartPanel: Paints the component by drawing the chart to fill the entire component, but allowing for the insets (which will be non-zero if a border has been set for this component).
paintComponent(Graphics) - Method in class org.jfree.chart.ui.PaletteSample: Draws the sample.
paintComponent(Graphics) - Method in class placement.DebugPanel
paintComponent(Graphics) - Method in class placement.RectangleDrawerPanel
paintIcon(Component, Graphics, int, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.CompositeIcon: Draw the icon at the specified location.
paintIcon(Component, Graphics, int, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.VTextIcon: Draw the icon at the specified location.
paintIcon(Component, Graphics, int, int) - Method in class org.vanted.scaling.resources.ScaledIcon
paintSelectionRectangle(JComponent, Point2D, Point2D) - Static method in class org.graffiti.util.GeneralEditorUtils: Draws a rectangle on the given graphics context.
PaintStatusSupport - Interface in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview
Pair<T,V> - Class in org.graffiti.util: Encapsulates two values in a pair.
Pair(T, V) - Constructor for class org.graffiti.util.Pair: Creates a new Pair object.
PajekClusterColor - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands
PajekClusterColor() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.PajekClusterColor
PajekReader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.pajek: edges in list form (not supported): vertices <# of vertices> 1 "x" 2 "y" 3 "z" arcslist 1 2 3 2 3 non-list form for edges: vertices <# of vertices> 1 "a" x y z 2 "b" x y 3 "c" edges 1 2 0.3 1 3 0.7 2 3 1.0 arcs 1 2 0.3 1 3 0.7 2 3 1.0
PajekReader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.pajek.PajekReader
PajekReaderPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.pajek: DOCUMENT ME!
PajekReaderPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.pajek.PajekReaderPlugin
PajekWriter - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.pajek
PajekWriter() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.pajek.PajekWriter
PaletteChooserPanel - Class in org.jfree.chart.ui: A component for choosing a palette from a list of available palettes.
PaletteChooserPanel(PaletteSample, PaletteSample[]) - Constructor for class org.jfree.chart.ui.PaletteChooserPanel: Constructor.
PaletteSample - Class in org.jfree.chart.ui: A panel that displays a palette sample.
PaletteSample(ColorPalette) - Constructor for class org.jfree.chart.ui.PaletteSample: Creates a new sample.
panel - Variable in class org.jfree.chart.demo.ContourPlotDemo: The panel.
PanScrollZoomDemo - Class in org.jfree.chart.demo: A demo for panning, scrolling and zooming.
PanScrollZoomDemo(String) - Constructor for class org.jfree.chart.demo.PanScrollZoomDemo: Creates a new demo instance.
PaperShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
PaperShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.PaperShape
PaperShapeBottomLeft - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
PaperShapeBottomLeft() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.PaperShapeBottomLeft
PaperShapeBottomRight - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
PaperShapeBottomRight() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.PaperShapeBottomRight
PaperShapeLeftBottom - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
PaperShapeLeftBottom() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.PaperShapeLeftBottom
PaperShapeLeftTop - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
PaperShapeLeftTop() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.PaperShapeLeftTop
PaperShapeRightBottom - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
PaperShapeRightBottom() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.PaperShapeRightBottom
PaperShapeRightTop - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
PaperShapeRightTop() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.PaperShapeRightTop
PaperShapeTopLeft - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
PaperShapeTopLeft() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.PaperShapeTopLeft
PaperShapeTopRight - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
PaperShapeTopRight() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.PaperShapeTopRight
PARAM_DRAW_GRID - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKGraffitiView
PARAM_MAX_EDGES - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKGraffitiView
PARAM_MAX_NODES - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKGraffitiView
Parameter - Interface in org.graffiti.plugin.parameter: Interface for a parameter used by an Algorithm.
PARAMETER_CONSTANT - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
PARAMETER_ID - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
PARAMETER_NAME - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
PARAMETER_UNITS - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
ParameterDialog - Interface in org.graffiti.editor.dialog: ParameterDialog provides an interface for dialogs displaying name-value pairs where the value can be edited.
ParameterEditPanel - Class in org.graffiti.editor.dialog: Represents a parameter edit panel.
ParameterEditPanel(Parameter[], Map<?, ?>, Selection, String, boolean, String) - Constructor for class org.graffiti.editor.dialog.ParameterEditPanel: Instantiates a new edit panel.
ParameterEditPanel(Parameter[], Map<?, ?>, Selection, String, boolean, String, JComponent) - Constructor for class org.graffiti.editor.dialog.ParameterEditPanel
Parameterizable - Interface in org.vanted.plugins.layout.multilevelframework: Implementing classes provide and can accept different Parameters.
ParameterList - Interface in org.graffiti.plugin.parameter: A ParameterList can be used to create enumeration type parameters, by grouping them into a list.
ParameterOptionPane - Class in org.graffiti.options
ParameterOptionPane(String, List<Parameter>, Class<? extends PreferencesInterface>) - Constructor for class org.graffiti.options.ParameterOptionPane
ParameterOutOfBoundsException - Exception in org.graffiti.plugin.algorithm: This exception is thrown if anyone tries to assign an invalid value to a LimitableParameter.
ParameterOutOfBoundsException() - Constructor for exception org.graffiti.plugin.algorithm.ParameterOutOfBoundsException
ParetoChartDemo - Class in org.jfree.chart.demo: A demo showing the creation of a pareto chart.
ParetoChartDemo(String) - Constructor for class org.jfree.chart.demo.ParetoChartDemo: Creates a new demo instance.
parse(InputStream) - Method in class org.graffiti.managers.pluginmgr.PluginXMLParser: Parses the given plugin.xml file.
parse(InputStream, Graph) - Method in class org.graffiti.plugins.ios.importers.graphml.parser.GraphMLParser: Parses the given InputStream and adds the read in data to the given Graph.
parse(Reader, Graph) - Method in class org.graffiti.plugins.ios.importers.graphml.parser.GraphMLParser
parse(String, ParsePosition) - Method in class org.jfree.chart.axis.CompassFormat
parseDay(String) - Static method in class org.jfree.data.time.Day: Parses the string argument as a day.
parseHour(String) - Static method in class org.jfree.data.time.Hour: Creates an Hour instance by parsing a string.
parseMinute(String) - Static method in class org.jfree.data.time.Minute: Creates a Minute instance by parsing a string.
parseMonth(String) - Static method in class org.jfree.data.time.Month: Parses the string argument as a month.
parseQuarter(String) - Static method in class org.jfree.data.time.Quarter: Parses the string argument as a quarter.
parser - Class in org.graffiti.plugins.ios.importers.gml: CUP v0.10k generated parser.
parser() - Constructor for class org.graffiti.plugins.ios.importers.gml.parser: Default constructor.
parser(Scanner) - Constructor for class org.graffiti.plugins.ios.importers.gml.parser: Constructor which sets the default scanner.
Parser - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xlsx
Parser() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xlsx.Parser
ParserException - Exception in org.graffiti.plugin.io: ParserException will be thrown whenever an error occurs while reading in a graph.
ParserException(String) - Constructor for exception org.graffiti.plugin.io.ParserException: Constructs a new ParserException.
parseSecond(String) - Static method in class org.jfree.data.time.Second: Creates a new instance by parsing a string.
parseWeek(String) - Static method in class org.jfree.data.time.Week: Parses the string argument as a week.
parseYear(String) - Static method in class org.jfree.data.time.Year: Parses the string argument as a year.
password - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.PasswordDialog
PasswordDialog - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes
PasswordDialog() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.PasswordDialog
PasswordDialog(boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.PasswordDialog
PasteAction - Class in org.graffiti.editor.actions: Represents a graph element paste action.
PasteAction(MainFrame) - Constructor for class org.graffiti.editor.actions.PasteAction: Constructs a new popup action.
PASTED_NODE - Static variable in class org.graffiti.editor.actions.PasteAction
PatchedHTMLEditorKit - Class in de.ipk_gatersleben.ag_nw.graffiti.services
PatchedHTMLEditorKit() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.services.PatchedHTMLEditorKit
PatchedHTMLEditorKit.LinkController - Class in de.ipk_gatersleben.ag_nw.graffiti.services
path - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.RestApiBiomodels
PATH_COMPLETELY_DIFFERENT - org.graffiti.event.PathComparisonResult
PathComparisonResult - Enum in org.graffiti.event
Pathway - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml
Pathway(KeggId, MapOrg, MapNumber, String, Url, Url, Collection<Entry>, Collection<Reaction>, Collection<Relation>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway
PATHWAY - de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggDatabases
PATHWAY - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReaction
PATHWAY_FILE_REFERENCE - org.FeatureSet
PATHWAY_ID_MISSING - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayError
PATHWAY_IMAGEURL_MISSING - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayWarning
PATHWAY_LINKURL_MISSING - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayWarning
PATHWAY_ORG_MISSING - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayError
PATHWAY_OVERVIEW - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.KeggNavigationToolbarCommand.Command
PATHWAY_TITLE_MISSING - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayWarning
PathWayHandler - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions
PathWayHandler - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions
PathWayHandler(Model, Graph) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.PathWayHandler: constructor for import
PathWayHandler(Model, Graph) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.PathWayHandler
PathwayKeggLoading - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.pathway_kegg_operation
PathwayKeggLoading() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.pathway_kegg_operation.PathwayKeggLoading
PathwayLinkVisualizationComponent - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references
PathwayLinkVisualizationComponent() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayLinkVisualizationComponent
PathWayLoaderLvL2 - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax: This Class sets the related pathway information to each node of the graph
PathWayLoaderLvL2(Model, Graph) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.PathWayLoaderLvL2
PathWayLoaderLvL3 - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax: This Class sets the related pathway information to each node of the graph
PathWayLoaderLvL3(Model, Graph) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.PathWayLoaderLvL3
PathwayReferenceAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references
PathwayReferenceAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayReferenceAlgorithm
PathwayReferenceAutoCreationAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references
PathwayReferenceAutoCreationAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayReferenceAutoCreationAlgorithm
PATHWAYSTEP - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReaction
PathwayWebLinkItem - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop
PathwayWebLinkItem(String, IOurl) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkItem
PathwayWebLinkItem(String, IOurl, boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkItem
PathwayWebLinkTab - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop
PathwayWebLinkTab(String, String, String, String, String, boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkTab
PathwayWebLinkTab(String, String, String, String, String, boolean, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkTab
PathwayWebLinkTreeNode - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop
PathwayWebLinkTreeNode(PathwayWebLinkItem) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkTreeNode
PathwayWebLinkTreeNode(String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkTreeNode
PATTERN_GRAFFITI_VERSION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.helper.PatternGraffitiHelper
PATTERN_INDEX - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.PatternAttributeUtils: The attribute name for the pattern index.
PATTERN_NAME - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.PatternAttributeUtils: The attribute name for the pattern name.
PATTERN_PATH - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.PatternAttributeUtils: The container for all pattern attributes.
PATTERN_RECORD_PREFIX - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.PatternAttributeUtils: The prefix of the attribute name for the pattern record.
PatternAttributeUtils - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder: Utilities for the handling the attributes on graphs, nodes, and edges and the corresponding definition of the strings.
PatternAttributeUtils() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.PatternAttributeUtils
PatternGraffitiHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.helper
PatternGraffitiHelper() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.helper.PatternGraffitiHelper
patternIndex - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.NodeCacheEntry: 1..x Number of pattern.
patternIndex - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.NodeCacheEntry3d: 1..x Number of pattern.
patternNode - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.NodeCacheEntry: Reference to a node in the pattern graph.
patternNode - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.NodeCacheEntry3d: Reference to a node in the pattern graph.
patternNodes - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.NodeCacheEntry: Vector with patterNodes Objects, which store the information about all connected patterns.
patternNodes - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.NodeCacheEntry3d: Vector with patterNodes Objects, which store the information about all connected patterns.
PatternSpringembedder - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache: Spring Embedder Algorithm.
PatternSpringembedder - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder: Spring Embedder Algorithm.
PatternSpringembedder() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache.PatternSpringembedder
PatternSpringembedder() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder
PatternSpringembedder3d - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder: Spring Embedder Algorithm.
PatternSpringembedder3d() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder3d
PatternTabsForClusterAnalysis - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control
PatternTabsForClusterAnalysis() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.PatternTabsForClusterAnalysis: Creates a new PatternTabsForInspector object.
PatternTabsForInspector - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control: DOCUMENT ME!
PatternTabsForInspector() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.PatternTabsForInspector
patternType - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.NodeCacheEntry: Name of pattern, "" if no pattern assigned
patternType - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.NodeCacheEntry3d: Name of pattern, "" if no pattern assigned
patternTypeEmpty - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.NodeCacheEntry
PatternVistorLayouter - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder
PatternVistorLayouter(Algorithm) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.PatternVistorLayouter
pause() - Method in class org.vanted.plugins.layout.stressminimization.BackgroundAlgorithm: Pauses the execution of this algorithm, if the algorithm is running.
PCrel - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.RelationType
PDBID - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathMolecule
PDFAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter: The print algorithm.
PDFAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PDFAlgorithm: Empty contructor.
PDFAlgorithm(int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PDFAlgorithm
PDFSVGAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter
PDFSVGAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PDFSVGAlgorithm
performAction(String) - Static method in class org.graffiti.plugin.actions.GraffitiAction
Performance - Class in org.jfree.chart.demo: A basic performance test for a couple of common operations.
Performance() - Constructor for class org.jfree.chart.demo.Performance: Default constructor.
Performance2 - Class in org.jfree.chart.demo: A basic performance test for a couple of common operations.
Performance2() - Constructor for class org.jfree.chart.demo.Performance2: Default constructor.
PerformanceTest - Class in placement
performDialogResize(Component) - Static method in class org.FolderPanel
performDirectoryListing(String, BackgroundTaskStatusProviderSupportingExternalCall) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.services.GUIhelper
performDownload(String, String, BackgroundTaskStatusProviderSupportingExternalCallImpl) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.services.GUIhelper
performDownload(String, String, BackgroundTaskStatusProviderSupportingExternalCallImpl, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.services.GUIhelper
performMultipleAandSingleAoperation(ArrayList<Double>) - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.AttributeCalculation
performOperation(double, double) - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.AttributeCalculation
performOperation(Collection<Double>) - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.AttributeCalculation
PERMANENT_INFO - org.graffiti.editor.MessageType
PERSISTENT - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
PERSON - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter.QueryType
PertubationShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
PertubationShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.PertubationShape
PFAMID - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathMolecule
PFS - Class in placement
PFS(double, double) - Constructor for class placement.PFS
phosphorylation - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.SubtypeName
PIE - de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.GraffitiCharts
PIE - Static variable in class org.jfree.chart.plot.DialShape: Pie.
PIE3D - de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.GraffitiCharts
PieChart3DDemo1 - Class in org.jfree.chart.demo: A simple demonstration application showing how to create a pie chart using data from a DefaultPieDataset.
PieChart3DDemo1(String) - Constructor for class org.jfree.chart.demo.PieChart3DDemo1: Creates a new demo.
PieChart3DDemo2 - Class in org.jfree.chart.demo: A rotating 3D pie chart.
PieChart3DDemo2(String) - Constructor for class org.jfree.chart.demo.PieChart3DDemo2: Creates a new demo.
PieChart3DDemo3 - Class in org.jfree.chart.demo: A pie chart with no labels.
PieChart3DDemo3(String) - Constructor for class org.jfree.chart.demo.PieChart3DDemo3: Creates a new demo.
PieChart3DDemo4 - Class in org.jfree.chart.demo: A pie chart with a custom label generator.
PieChart3DDemo4(String) - Constructor for class org.jfree.chart.demo.PieChart3DDemo4: Creates a new demo.
PieChartDemo1 - Class in org.jfree.chart.demo: A simple demonstration application showing how to create a pie chart using data from a DefaultPieDataset.
PieChartDemo1(String) - Constructor for class org.jfree.chart.demo.PieChartDemo1: Default constructor.
PieChartDemo2 - Class in org.jfree.chart.demo: A simple demonstration application showing how to create a pie chart using data from a DefaultPieDataset.
PieChartDemo2(String) - Constructor for class org.jfree.chart.demo.PieChartDemo2: Default constructor.
PieChartDemo3 - Class in org.jfree.chart.demo: A pie chart with no data, to demonstrate the use of the setNoDataMessage(...) method.
PieChartDemo3(String) - Constructor for class org.jfree.chart.demo.PieChartDemo3: Default constructor.
PieChartDemo4 - Class in org.jfree.chart.demo: A simple demonstration application showing how to create a pie chart using data from a DefaultPieDataset.
PieChartDemo4(String) - Constructor for class org.jfree.chart.demo.PieChartDemo4: Default constructor.
PieChartDemo5 - Class in org.jfree.chart.demo: A pie chart with no section labels.
PieChartDemo5(String) - Constructor for class org.jfree.chart.demo.PieChartDemo5: Creates a new demo instance.
PieChartDemo6 - Class in org.jfree.chart.demo: A pie chart with a custom label generator.
PieChartDemo6(String) - Constructor for class org.jfree.chart.demo.PieChartDemo6: Creates a new demo instance.
PieChartDemo7 - Class in org.jfree.chart.demo: A demo showing four pie charts.
PieChartDemo7(String) - Constructor for class org.jfree.chart.demo.PieChartDemo7: Creates a new demo instance.
PieDataset - Interface in org.jfree.data: A general purpose dataset where values are associated with keys.
PIEDATASET_TAG - Static variable in interface org.jfree.data.xml.DatasetTags: The 'PieDataset' element name.
PieDatasetHandler - Class in org.jfree.data.xml: A SAX handler for reading a PieDataset from an XML file.
PieDatasetHandler() - Constructor for class org.jfree.data.xml.PieDatasetHandler: Default constructor.
PieLabelDistributor - Class in org.jfree.chart.plot: This class distributes the section labels for one side of a pie chart so that they do not overlap.
PieLabelDistributor(int) - Constructor for class org.jfree.chart.plot.PieLabelDistributor: Creates a new distributor.
PieLabelRecord - Class in org.jfree.chart.plot: A structure that retains information about the label for a section in a pie chart.
PieLabelRecord(Comparable, double, double, TextBox, double, double, double) - Constructor for class org.jfree.chart.plot.PieLabelRecord: Creates a new record.
PiePlot - Class in org.jfree.chart.plot: A plot that displays data in the form of a pie chart, using data from any class that implements the PieDataset interface.
PiePlot() - Constructor for class org.jfree.chart.plot.PiePlot: Creates a new plot.
PiePlot(PieDataset) - Constructor for class org.jfree.chart.plot.PiePlot: Creates a plot that will draw a pie chart for the specified dataset.
PiePlot3D - Class in org.jfree.chart.plot: A plot that displays data in the form of a 3D pie chart, using data from any class that implements the PieDataset interface.
PiePlot3D(PieDataset) - Constructor for class org.jfree.chart.plot.PiePlot3D: Creates a pie chart with a three dimensional effect using the specified dataset.
PiePlotState - Class in org.jfree.chart.plot: A renderer state.
PiePlotState(PlotRenderingInfo) - Constructor for class org.jfree.chart.plot.PiePlotState: Creates a new object for recording temporary state information for a renderer.
PieSectionEntity - Class in org.jfree.chart.entity: A chart entity that represents one section within a pie plot.
PieSectionEntity(int, int, Comparable, Shape, String) - Constructor for class org.jfree.chart.entity.PieSectionEntity: Deprecated.
Use alternative constructor.
PieSectionEntity(int, int, Comparable, Shape, String, String) - Constructor for class org.jfree.chart.entity.PieSectionEntity: Deprecated.
Use alternative constructor.
PieSectionEntity(Shape, PieDataset, int, int, Comparable, String, String) - Constructor for class org.jfree.chart.entity.PieSectionEntity: Creates a new pie section entity.
PieSectionLabelGenerator - Interface in org.jfree.chart.labels: Interface for a label generator for plots that use data from a PieDataset.
PieToolTipGenerator - Interface in org.jfree.chart.labels: A tool tip generator that is used by the PiePlot class.
PieURLGenerator - Interface in org.jfree.chart.urls: Interface for a URL generator for plots that use data from a PieDataset.
PIN - org.LabelFrameSetting
PinNeedle - Class in org.jfree.chart.needle: A needle that is drawn as a pin shape.
PinNeedle() - Constructor for class org.jfree.chart.needle.PinNeedle
PIRID - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathMolecule
place(ArrayList<Rectangle2D>) - Method in class placement.PFS
place(ArrayList<Rectangle2D>) - Method in class placement.QPRectanglePlacement
place(ArrayList<Rectangle2D>) - Method in interface placement.RectanglePlacement
placement - package placement
Placement - Interface in placement
Placer - Interface in org.vanted.plugins.layout.multilevelframework: Deconstructs coarsening levels.
placerGroup - Variable in class org.vanted.plugins.layout.multilevelframework.MLFParamModel
placers - Static variable in class org.vanted.plugins.layout.multilevelframework.MultilevelFrameworkLayout
PLANET_TO_MOONS_KEY - Static variable in class org.vanted.plugins.layout.multilevelframework.SolarMerger
PLANETS_KEY - Static variable in class org.vanted.plugins.layout.multilevelframework.SolarMerger
playAnimation(int) - Method in class org.MarkComponent
pleaseContinueRun() - Method in class de.ipk_gatersleben.ag_nw.graffiti.KeggSoapAndPathwayService
pleaseContinueRun() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.HammingCalculator
pleaseContinueRun() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMservice
pleaseContinueRun() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionService
pleaseContinueRun() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeService
pleaseContinueRun() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathService
pleaseContinueRun() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.AllSuperGraphsCreator
pleaseContinueRun() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataFileReader
pleaseContinueRun() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.Experiment2GraphHelper
pleaseContinueRun() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggService
pleaseContinueRun() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.TabKegg
pleaseContinueRun() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyCorrlationFinder
pleaseContinueRun() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.MyClusterGraphBasedReLayoutService
pleaseContinueRun() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.MyNonInteractiveSpringEmb
pleaseContinueRun() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PDFAlgorithm
pleaseContinueRun() - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskStatusProviderSupportingExternalCallImpl
pleaseContinueRun() - Method in interface org.BackgroundTaskStatusProvider: This method is called as soon as the user indicates that he is comfortable to let the algorithm continue its work.
pleaseStop() - Method in class de.ipk_gatersleben.ag_nw.graffiti.KeggSoapAndPathwayService
pleaseStop() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.HammingCalculator
pleaseStop() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMservice
pleaseStop() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionService
pleaseStop() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeService
pleaseStop() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathService
pleaseStop() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.AllSuperGraphsCreator
pleaseStop() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataFileReader
pleaseStop() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.Experiment2GraphHelper
pleaseStop() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggService
pleaseStop() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.TabKegg
pleaseStop() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyCorrlationFinder
pleaseStop() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.MyClusterGraphBasedReLayoutService
pleaseStop() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.MyNonInteractiveSpringEmb
pleaseStop() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PDFAlgorithm
pleaseStop() - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskStatusProviderSupportingExternalCallImpl
pleaseStop() - Method in interface org.BackgroundTaskStatusProvider: If this method is called on the status provider, the linked work task should stop its execution as soon as possible.
plot - Variable in class org.jfree.chart.demo.PanScrollZoomDemo
Plot - Class in org.jfree.chart.plot: The base class for all plots in JFreeChart.
plotAxisSteps - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ChartOptions
plotChanged(PlotChangeEvent) - Method in interface org.jfree.chart.event.PlotChangeListener: Receives notification of a plot change event.
plotChanged(PlotChangeEvent) - Method in class org.jfree.chart.JFreeChart: Receives notification that the plot has changed, and passes this on to registered listeners.
plotChanged(PlotChangeEvent) - Method in class org.jfree.chart.plot.CombinedDomainCategoryPlot: Receives a PlotChangeEvent and responds by notifying all listeners.
plotChanged(PlotChangeEvent) - Method in class org.jfree.chart.plot.CombinedDomainXYPlot: Receives a PlotChangeEvent and responds by notifying all listeners.
plotChanged(PlotChangeEvent) - Method in class org.jfree.chart.plot.CombinedRangeCategoryPlot: Receives a PlotChangeEvent and responds by notifying all listeners.
plotChanged(PlotChangeEvent) - Method in class org.jfree.chart.plot.CombinedRangeXYPlot: Receives a PlotChangeEvent and responds by notifying all listeners.
PlotChangeEvent - Class in org.jfree.chart.event: An event that can be forwarded to any PlotChangeListener to signal a change to a plot.
PlotChangeEvent(Plot) - Constructor for class org.jfree.chart.event.PlotChangeEvent: Creates a new PlotChangeEvent.
PlotChangeListener - Interface in org.jfree.chart.event: The interface that must be supported by classes that wish to receive notification of changes to a plot.
PlotOrientation - Class in org.jfree.chart.plot: Used to indicate the orientation (horizontal or vertical) of a 2D plot.
PlotOrientationDemo - Class in org.jfree.chart.demo: A demo showing eight plots with various inverted axis and plot orientation combinations.
PlotOrientationDemo(String) - Constructor for class org.jfree.chart.demo.PlotOrientationDemo: Creates a new demo instance.
PlotOrientationDemo2 - Class in org.jfree.chart.demo: A demo showing eight plots with various inverted axis and plot orientation combinations.
PlotOrientationDemo2(String) - Constructor for class org.jfree.chart.demo.PlotOrientationDemo2: Creates a new demo instance.
PlotPropertyEditPanel - Class in org.jfree.chart.ui: A panel for editing the properties of a Plot.
PlotPropertyEditPanel(Plot) - Constructor for class org.jfree.chart.ui.PlotPropertyEditPanel: Standard constructor - constructs a panel for editing the properties of the specified plot.
PlotRenderingInfo - Class in org.jfree.chart.plot: Stores information about the dimensions of a plot and its subplots.
PlotRenderingInfo(ChartRenderingInfo) - Constructor for class org.jfree.chart.plot.PlotRenderingInfo: Default constructor.
PlotState - Class in org.jfree.chart.plot: Records information about the state of a plot during the drawing process.
PlotState() - Constructor for class org.jfree.chart.plot.PlotState: Creates a new state object.
PLUGIN_DTD_LOCAL - Static variable in class org.graffiti.managers.pluginmgr.PluginXMLParser: The local plugin dtd.
pluginAdded(GenericPlugin, PluginDescription) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.enhanced_attribute_editors.IPKeditComponents
pluginAdded(GenericPlugin, PluginDescription) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings.PreferencesDialog
pluginAdded(GenericPlugin, PluginDescription) - Method in class org.graffiti.attributes.AttributeTypesManager: Called by the plugin manager, iff a plugin has been added.
pluginAdded(GenericPlugin, PluginDescription) - Method in class org.graffiti.editor.MainFrame: Called by the plugin manager, iff a plugin has been added.
pluginAdded(GenericPlugin, PluginDescription) - Method in class org.graffiti.managers.AttributeComponentManager: Called by the plugin manager, iff a plugin has been added.
pluginAdded(GenericPlugin, PluginDescription) - Method in class org.graffiti.managers.DefaultAlgorithmManager
pluginAdded(GenericPlugin, PluginDescription) - Method in class org.graffiti.managers.DefaultIOManager
pluginAdded(GenericPlugin, PluginDescription) - Method in class org.graffiti.managers.DefaultModeManager
pluginAdded(GenericPlugin, PluginDescription) - Method in class org.graffiti.managers.DefaultToolManager
pluginAdded(GenericPlugin, PluginDescription) - Method in class org.graffiti.managers.DefaultURLattributeActionManager
pluginAdded(GenericPlugin, PluginDescription) - Method in class org.graffiti.managers.DefaultViewManager
pluginAdded(GenericPlugin, PluginDescription) - Method in class org.graffiti.managers.EditComponentManager: Called by the plugin manager, iff a plugin has been added.
pluginAdded(GenericPlugin, PluginDescription) - Method in interface org.graffiti.managers.pluginmgr.PluginManagerListener: Called by the plugin manager, iff a plugin has been added.
pluginAdded(GenericPlugin, PluginDescription) - Method in class org.graffiti.managers.PreferenceManager: called each time a plugin gets loaded Checks the Plugins entries (Views, Algorithms, Tabs, ViewComponents, Tools) if they implement the PreferenceInterface If so, the preferences of this class will be a) read (and stored), if this is a new class (first time) b) set, if there are present preferences stored Also this algorithm will synchronize the preferences, in case preferences have been created or deleted.
pluginAdded(GenericPlugin, PluginDescription) - Method in class org.graffiti.session.Session: Called by the plugin manager, iff a plugin has been added.
PluginAlreadyLoadedException - Exception in org.graffiti.managers.pluginmgr
PluginAlreadyLoadedException(String) - Constructor for exception org.graffiti.managers.pluginmgr.PluginAlreadyLoadedException
PluginCopyPatternLayout - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.copy_pattern_layout
PluginCopyPatternLayout() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.copy_pattern_layout.PluginCopyPatternLayout: DOCTODO: Include method header
PluginDependency - Class in org.graffiti.managers.pluginmgr: Models a dependency to another plugin.
PluginDependency() - Constructor for class org.graffiti.managers.pluginmgr.PluginDependency
PluginDescription - Class in org.graffiti.managers.pluginmgr: Contains a meta data of a plugin.
PluginDescription() - Constructor for class org.graffiti.managers.pluginmgr.PluginDescription: Constructs an empty plugin description,
PluginDescriptionCollector - Interface in org.graffiti.managers.pluginmgr: Collects plugin description URLs, which can be used by the PluginSelector.
PluginEntry - Interface in org.graffiti.managers.pluginmgr: An entry in the plugin manager.
PluginFeatureClusterCommands - Class in vanted_feature
PluginFeatureClusterCommands() - Constructor for class vanted_feature.PluginFeatureClusterCommands
PluginFeatureDataMapping - Class in vanted_feature
PluginFeatureDataMapping() - Constructor for class vanted_feature.PluginFeatureDataMapping
PluginFeatureExtendedFileFormatSupport - Class in vanted_feature
PluginFeatureExtendedFileFormatSupport() - Constructor for class vanted_feature.PluginFeatureExtendedFileFormatSupport
PluginFeatureHierarchyCommands - Class in vanted_feature
PluginFeatureHierarchyCommands() - Constructor for class vanted_feature.PluginFeatureHierarchyCommands
PluginFeatureMacroRecording - Class in vanted_feature
PluginFeatureMacroRecording() - Constructor for class vanted_feature.PluginFeatureMacroRecording
PluginFeatureMetaCropAccess - Class in vanted_feature
PluginFeatureMetaCropAccess() - Constructor for class vanted_feature.PluginFeatureMetaCropAccess
PluginFeatureNetworkAnalysisCommands - Class in vanted_feature
PluginFeatureNetworkAnalysisCommands() - Constructor for class vanted_feature.PluginFeatureNetworkAnalysisCommands
PluginFeatureStatistics - Class in vanted_feature
PluginFeatureStatistics() - Constructor for class vanted_feature.PluginFeatureStatistics
PluginFileFilter - Class in org.graffiti.managers.pluginmgr: Represents a file filter for graffiti plugins.
PluginFileFilter(String) - Constructor for class org.graffiti.managers.pluginmgr.PluginFileFilter: Constructor for PluginFileFilter.
PluginFileFilter(String[]) - Constructor for class org.graffiti.managers.pluginmgr.PluginFileFilter: Constructs a new plugin file filter from the given array of extensions.
PluginHelper - Class in org.graffiti.util
PluginHelper() - Constructor for class org.graffiti.util.PluginHelper
PluginInfoHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_dbe
PluginInfoHelper() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_dbe.PluginInfoHelper
PluginInfoMenu - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_dbe: This is a simple example for a gui component plugin for Graffiti.
PluginInfoMenu - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_example: Deprecated.
since 2.6.5
PluginInfoMenu() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_dbe.PluginInfoMenu: Creates a new GuiComponentsPlugin object.
PluginInfoMenu() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_example.PluginInfoMenu: Deprecated.

Creates a new GuiComponentsPlugin object.
PluginManager - Interface in org.graffiti.managers.pluginmgr: Defines an interface for a plugin manager handeling the list of plugins.
PluginManagerDialog - Class in org.graffiti.managers.pluginmgr: DOCUMENT ME!
PluginManagerDialog(Frame, PluginManager) - Constructor for class org.graffiti.managers.pluginmgr.PluginManagerDialog: Constructs a new plugin manager dialog.
PluginManagerEditAction - Class in org.graffiti.editor.actions: Called, if the plugin manager dialog should be shown.
PluginManagerEditAction(MainFrame, PluginManager) - Constructor for class org.graffiti.editor.actions.PluginManagerEditAction: Creates a new PluginManagerEditAction object.
PluginManagerException - Exception in org.graffiti.managers.pluginmgr: PluginManagerException is thrown, iff an error occured during the loading of a plugin.
PluginManagerException(String) - Constructor for exception org.graffiti.managers.pluginmgr.PluginManagerException: Constructor for PluginManagerException.
PluginManagerException(String, String) - Constructor for exception org.graffiti.managers.pluginmgr.PluginManagerException: Constructs a plugin manager exception from the given parameters.
PluginManagerListener - Interface in org.graffiti.managers.pluginmgr: Represents a listener, which is called, if a plugin has been added to the plugin manager.
PluginPanel - Class in org.graffiti.plugin.gui: The panel to which plugins can add bigger view-like components.
PluginPanel() - Constructor for class org.graffiti.plugin.gui.PluginPanel: Creates a new PluginPanel object.
PluginPatternSpringembedder - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder
PluginPatternSpringembedder() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PluginPatternSpringembedder
PluginPatternSpringembedderNoCache - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache
PluginPatternSpringembedderNoCache() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache.PluginPatternSpringembedderNoCache: DOCTODO: Include method header
pluginSelectionMoveAllowed() - Method in class org.graffiti.editor.GravistoService: A global variable, for communication between the IPK Editing Tools and some IPK Layouter.
PluginSelector - Class in org.graffiti.managers.pluginmgr: Represents a plugin selector.
PluginSelector(PluginManagerDialog, PluginDescriptionCollector) - Constructor for class org.graffiti.managers.pluginmgr.PluginSelector: Constructs a new plugin selector from the given plugin description collector.
pluginSetMoveAllowed(boolean) - Method in class org.graffiti.editor.GravistoService: A global variable, for communication between the IPK Editing Tools and some IPK Layouter.
PluginStatusInfo - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings
PluginStatusInfo() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings.PluginStatusInfo
pluginTag - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.RSSFeedManager
pluginWaitsForUser() - Method in class de.ipk_gatersleben.ag_nw.graffiti.KeggSoapAndPathwayService
pluginWaitsForUser() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.HammingCalculator
pluginWaitsForUser() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMservice
pluginWaitsForUser() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionService
pluginWaitsForUser() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeService
pluginWaitsForUser() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathService
pluginWaitsForUser() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.AllSuperGraphsCreator
pluginWaitsForUser() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataFileReader
pluginWaitsForUser() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.Experiment2GraphHelper
pluginWaitsForUser() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggService
pluginWaitsForUser() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.TabKegg
pluginWaitsForUser() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyCorrlationFinder
pluginWaitsForUser() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.MyClusterGraphBasedReLayoutService
pluginWaitsForUser() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.MyNonInteractiveSpringEmb
pluginWaitsForUser() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PDFAlgorithm
pluginWaitsForUser() - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskStatusProviderSupportingExternalCallImpl
pluginWaitsForUser() - Method in interface org.BackgroundTaskStatusProvider
PluginXMLParser - Class in org.graffiti.managers.pluginmgr: The XML parser for the plugin descriptions.
PluginXMLParser() - Constructor for class org.graffiti.managers.pluginmgr.PluginXMLParser: Constructs a new plugin xml parser instance.
PluginXMLParserErrorHandler - Class in org.graffiti.managers.pluginmgr: An error handler class for the plugin xml parser.
PluginXMLParserErrorHandler() - Constructor for class org.graffiti.managers.pluginmgr.PluginXMLParserErrorHandler
PlumNeedle - Class in org.jfree.chart.needle: A needle for use with the CompassPlot class.
PlumNeedle() - Constructor for class org.jfree.chart.needle.PlumNeedle
PngJpegAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter
PngJpegAlgorithm(boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithm
PngJpegAlgorithmParams - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter
PngJpegAlgorithmParams() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams
PNode<S extends Comparable<?>> - Class in placement
PNTReader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.petri_ina_pnt
PNTReader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.petri_ina_pnt.PNTReader
PNTSerializer - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.petri_ina_pnt
PNTSerializer() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.petri_ina_pnt.PNTSerializer
PNTSerializerPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.petri_ina_pnt
PNTSerializerPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.petri_ina_pnt.PNTSerializerPlugin
POINT_ELEMENT_LITERAL - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLConstants
POINT_X - Static variable in class org.graffiti.plugins.ios.importers.gml.sym
POINT_Y - Static variable in class org.graffiti.plugins.ios.importers.gml.sym
POINT_Z - Static variable in class org.graffiti.plugins.ios.importers.gml.sym
Point2Dfix - Class in org.graffiti.plugins.views.defaults
Point2Dfix(double, double) - Constructor for class org.graffiti.plugins.views.defaults.Point2Dfix
Point2DTimePoint - Class in org.vanted.animation.data
Point2DTimePoint(double, double, double) - Constructor for class org.vanted.animation.data.Point2DTimePoint
Point2DTimePoint(double, Point2D) - Constructor for class org.vanted.animation.data.Point2DTimePoint
PointerNeedle - Class in org.jfree.chart.needle: A needle in the shape of a pointer, for use with the CompassPlot class.
PointerNeedle() - Constructor for class org.jfree.chart.needle.PointerNeedle
PointPair - Class in org.graffiti.plugins.attributecomponents.simplelabel: DOCUMENT ME!
PointPair() - Constructor for class org.graffiti.plugins.attributecomponents.simplelabel.PointPair: Creates a new PointPair object.
pointRenderer(Graphics2D, Rectangle2D, PlotRenderingInfo, ContourPlot, ValueAxis, ValueAxis, ColorBar, ContourDataset, CrosshairState) - Method in class org.jfree.chart.plot.ContourPlot: Draws the visual representation of a single data item.
PolarChartDemo - Class in org.jfree.chart.demo: PolarChartDemo demonstrates the capabilities of the PolarPlot.
PolarChartDemo(String) - Constructor for class org.jfree.chart.demo.PolarChartDemo: Creates a new instance of the demo.
PolarChartPanel - Class in org.jfree.chart: PolarChartPanel is the top level object for using the PolarPlot.
PolarChartPanel(JFreeChart) - Constructor for class org.jfree.chart.PolarChartPanel: Constructs a JFreeChart panel.
PolarChartPanel(JFreeChart, boolean) - Constructor for class org.jfree.chart.PolarChartPanel: Creates a new panel.
PolarItemRenderer - Interface in org.jfree.chart.renderer: The interface for a renderer that can be used by the PolarPlot class.
PolarPlot - Class in org.jfree.chart.plot: Plots data that is in (theta, radius) pairs where theta equal to zero is due north and and increases clockwise.
PolarPlot() - Constructor for class org.jfree.chart.plot.PolarPlot: Default constructor.
PolarPlot(XYDataset, ValueAxis, PolarItemRenderer) - Constructor for class org.jfree.chart.plot.PolarPlot: Creates a new plot.
POLYCLOSED_CLASSNAME - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants: closed polygonal shape class name
PolygonalNodeShape - Class in org.graffiti.plugins.views.defaults: DOCUMENT ME!
PolygonalNodeShape() - Constructor for class org.graffiti.plugins.views.defaults.PolygonalNodeShape
POLYLINE - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
POLYLINE_CLASSNAME - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants: polyline edge shape class name
PolyLineEdgeShape - Class in org.graffiti.plugins.views.defaults: Represents an edge with several segments separated by bends.
PolyLineEdgeShape() - Constructor for class org.graffiti.plugins.views.defaults.PolyLineEdgeShape
popCoarseningLevel() - Method in class org.vanted.plugins.layout.multilevelframework.MultilevelGraph: Removes the coarsest coarsening level.
popSubHandler() - Method in class org.jfree.data.xml.RootHandler: Pops a sub-handler from the stack.
PopulationChartDemo - Class in org.jfree.chart.demo: A population pyramid demo.
PopulationChartDemo(String) - Constructor for class org.jfree.chart.demo.PopulationChartDemo: Creates a new demo.
PopupAction - Class in org.graffiti.plugin.actions: Represents an action, which is called, if there should be displayed a popup menu.
PopupAction(MainFrame) - Constructor for class org.graffiti.plugin.actions.PopupAction: Constructs a new popup action.
Port - Class in org.graffiti.graphics: A port comprises a name and a coordinate.
Port(String, double, double) - Constructor for class org.graffiti.graphics.Port: Constructor for Port.
PORT - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
PortableUrlService - Class in org.graffiti.plugins.ios.importers: A service-class that increases portability of rich-attribute graph across platforms.
PortAttribute - Class in org.graffiti.graphics: Contains information about the port of a node
PortAttribute(String) - Constructor for class org.graffiti.graphics.PortAttribute: Constructor for Port.
PortAttribute(String, String, double, double) - Constructor for class org.graffiti.graphics.PortAttribute: Constructor for Port.
PortAttribute(String, String, Point2D) - Constructor for class org.graffiti.graphics.PortAttribute: Constructor for Port.
PortAttribute(String, String, CoordinateAttribute) - Constructor for class org.graffiti.graphics.PortAttribute: Constructor for Port.
PortAttribute(String, StringAttribute, double, double) - Constructor for class org.graffiti.graphics.PortAttribute: Constructor for Port.
PortAttribute(String, StringAttribute, Point2D) - Constructor for class org.graffiti.graphics.PortAttribute: Constructor for Port.
PortAttribute(String, StringAttribute, CoordinateAttribute) - Constructor for class org.graffiti.graphics.PortAttribute: Constructor for Port.
PortAttribute(String, Port) - Constructor for class org.graffiti.graphics.PortAttribute: Constructor with an ID and a Port object.
PORTS - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
PORTS_PATH - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants: Path to ports attribute
PortsAttribute - Class in org.graffiti.graphics: Contains ingoing, outgoing and common ports
PortsAttribute(String) - Constructor for class org.graffiti.graphics.PortsAttribute: Constructor for Ports.
PortsAttribute(String, CollectionAttribute, CollectionAttribute, CollectionAttribute) - Constructor for class org.graffiti.graphics.PortsAttribute: Constructor for Ports.
position - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.NodeCacheEntry: Cache for Node Positions
position - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.NodeCacheEntry3d: Cache for Node Positions
POSITION - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
POSITION_INDEX - Static variable in class org.jfree.chart.renderer.WaferMapRenderer: default multivalue paint calculation
Position2DAnimation - Class in org.vanted.animation.animations: Animates the position of a Node object.
Position2DAnimation(Attributable, List<Point2DTimePoint>, double) - Constructor for class org.vanted.animation.animations.Position2DAnimation
Position2DAnimation(Attributable, List<Point2DTimePoint>, double, double) - Constructor for class org.vanted.animation.animations.Position2DAnimation
Position2DAnimation(Attributable, List<Point2DTimePoint>, double, double, int) - Constructor for class org.vanted.animation.animations.Position2DAnimation
Position2DAnimation(Attributable, List<Point2DTimePoint>, double, double, int, Looper) - Constructor for class org.vanted.animation.animations.Position2DAnimation
Position2DAnimation(Attributable, List<Point2DTimePoint>, double, double, int, Looper, Interpolator) - Constructor for class org.vanted.animation.animations.Position2DAnimation
PositionAttribute - Class in org.graffiti.graphics: Contains properties of the attribute position for a label
PositionAttribute(String) - Constructor for class org.graffiti.graphics.PositionAttribute: Constructor for NodeLabelPositionAttribute.
PositionButton - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment
PositionButton(LabelAlignmentAttributeEditor, AlignmentSetting, String, boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment.PositionButton
PositionGridGenerator - Class in org
PositionGridGenerator(double, double, double) - Constructor for class org.PositionGridGenerator: Create a new PositionGridGenerator.
PositionXAnimation - Class in org.vanted.animation.animations: Animates the x coordinate of a Node object.
PositionXAnimation(Attributable, List<DoubleTimePoint>, double) - Constructor for class org.vanted.animation.animations.PositionXAnimation
PositionXAnimation(Attributable, List<DoubleTimePoint>, double, double) - Constructor for class org.vanted.animation.animations.PositionXAnimation
PositionXAnimation(Attributable, List<DoubleTimePoint>, double, double, int) - Constructor for class org.vanted.animation.animations.PositionXAnimation
PositionXAnimation(Attributable, List<DoubleTimePoint>, double, double, int, Looper) - Constructor for class org.vanted.animation.animations.PositionXAnimation
PositionXAnimation(Attributable, List<DoubleTimePoint>, double, double, int, Looper, Interpolator) - Constructor for class org.vanted.animation.animations.PositionXAnimation
PositionYAnimation - Class in org.vanted.animation.animations: Animates the y coordinate of a Node object.
PositionYAnimation(Attributable, List<DoubleTimePoint>, double) - Constructor for class org.vanted.animation.animations.PositionYAnimation
PositionYAnimation(Attributable, List<DoubleTimePoint>, double, double) - Constructor for class org.vanted.animation.animations.PositionYAnimation
PositionYAnimation(Attributable, List<DoubleTimePoint>, double, double, int) - Constructor for class org.vanted.animation.animations.PositionYAnimation
PositionYAnimation(Attributable, List<DoubleTimePoint>, double, double, int, Looper) - Constructor for class org.vanted.animation.animations.PositionYAnimation
PositionYAnimation(Attributable, List<DoubleTimePoint>, double, double, int, Looper, Interpolator) - Constructor for class org.vanted.animation.animations.PositionYAnimation
postAttributeAdded(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
postAttributeAdded(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
postAttributeAdded(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkTab
postAttributeAdded(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics
postAttributeAdded(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPatternLayout
postAttributeAdded(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPluginControl
postAttributeAdded(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabVisualisationControl: Deprecated.
postAttributeAdded(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.WorkflowHelper: Deprecated.
postAttributeAdded(AttributeEvent) - Method in class org.graffiti.event.AbstractAttributeListener: Called after an attribute has been added.
postAttributeAdded(AttributeEvent) - Method in class org.graffiti.event.AttributeAdapter
postAttributeAdded(AttributeEvent) - Method in interface org.graffiti.event.AttributeListener: Called after an attribute has been added.
postAttributeAdded(AttributeEvent) - Method in class org.graffiti.event.ListenerManager: Called after an attribute has been added.
postAttributeAdded(AttributeEvent) - Method in class org.graffiti.plugin.editcomponent.GraphComponentEditComponent: Called after an attribute as been added.
postAttributeAdded(AttributeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
postAttributeAdded(AttributeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called after an attribute has been added.
postAttributeAdded(AttributeEvent) - Method in class org.graffiti.plugin.inspector.SubtabHostTab
postAttributeAdded(AttributeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called after an attribute has been added.
postAttributeAdded(AttributeEvent) - Method in class org.graffiti.plugins.inspectors.defaults.AbstractTab: Called after an attribute has been added.
postAttributeAdded(AttributeEvent) - Method in class org.graffiti.plugins.views.defaults.GraffitiView: Called after an attribute has been added.
postAttributeAdded(AttributeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
postAttributeAdded(AttributeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called after an attribute has been added.
postAttributeChanged(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
postAttributeChanged(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKGraffitiView
postAttributeChanged(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
postAttributeChanged(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkTab
postAttributeChanged(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics
postAttributeChanged(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPatternLayout
postAttributeChanged(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPluginControl
postAttributeChanged(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabVisualisationControl: Deprecated.
postAttributeChanged(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.WorkflowHelper: Deprecated.
postAttributeChanged(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.KineticLawHelper
postAttributeChanged(AttributeEvent) - Method in class org.graffiti.event.AbstractAttributeListener: Called after an attribute has been changed.
postAttributeChanged(AttributeEvent) - Method in class org.graffiti.event.AttributeAdapter
postAttributeChanged(AttributeEvent) - Method in interface org.graffiti.event.AttributeListener: Called after an attribute has been changed.
postAttributeChanged(AttributeEvent) - Method in class org.graffiti.event.ListenerManager: Called after an attribute has been changed.
postAttributeChanged(AttributeEvent) - Method in class org.graffiti.plugin.editcomponent.AbstractValueEditComponent: Called after a change of an displayable took place.
postAttributeChanged(AttributeEvent) - Method in class org.graffiti.plugin.editcomponent.GraphComponentEditComponent: Called after a change of an attribute took place.
postAttributeChanged(AttributeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
postAttributeChanged(AttributeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called after an attribute has been changed.
postAttributeChanged(AttributeEvent) - Method in class org.graffiti.plugin.inspector.SubtabHostTab
postAttributeChanged(AttributeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called after an attribute has been changed.
postAttributeChanged(AttributeEvent) - Method in class org.graffiti.plugins.inspectors.defaults.AbstractTab: Called after an attribute has been changed.
postAttributeChanged(AttributeEvent) - Method in class org.graffiti.plugins.inspectors.defaults.GraphTab: If the path to the changed attribute is ".directed", then the directed property of the graph (attributable of the attribute) is updated.
postAttributeChanged(AttributeEvent) - Method in class org.graffiti.plugins.views.defaults.GraffitiView: Called after an attribute has been changed.
postAttributeChanged(AttributeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
postAttributeChanged(AttributeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called after an attribute has been changed.
postAttributeRemoved(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
postAttributeRemoved(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
postAttributeRemoved(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkTab
postAttributeRemoved(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics
postAttributeRemoved(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPatternLayout
postAttributeRemoved(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPluginControl
postAttributeRemoved(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabVisualisationControl: Deprecated.
postAttributeRemoved(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.WorkflowHelper: Deprecated.
postAttributeRemoved(AttributeEvent) - Method in class org.graffiti.event.AbstractAttributeListener: Called after an attribute has been removed.
postAttributeRemoved(AttributeEvent) - Method in class org.graffiti.event.AttributeAdapter
postAttributeRemoved(AttributeEvent) - Method in interface org.graffiti.event.AttributeListener: Called after an attribute has been removed.
postAttributeRemoved(AttributeEvent) - Method in class org.graffiti.event.ListenerManager: Called after an attribute has been removed.
postAttributeRemoved(AttributeEvent) - Method in class org.graffiti.plugin.editcomponent.GraphComponentEditComponent: Called just before an attribute is removed.
postAttributeRemoved(AttributeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
postAttributeRemoved(AttributeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called after an attribute has been removed.
postAttributeRemoved(AttributeEvent) - Method in class org.graffiti.plugin.inspector.SubtabHostTab
postAttributeRemoved(AttributeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called after an attribute has been removed.
postAttributeRemoved(AttributeEvent) - Method in class org.graffiti.plugins.inspectors.defaults.AbstractTab: Called after an attribute has been removed.
postAttributeRemoved(AttributeEvent) - Method in class org.graffiti.plugins.views.defaults.GraffitiView: Called after an attribute has been removed.
postAttributeRemoved(AttributeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
postAttributeRemoved(AttributeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called after an attribute has been removed.
postDirectedChanged(EdgeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
postDirectedChanged(EdgeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
postDirectedChanged(EdgeEvent) - Method in class org.graffiti.event.AbstractEdgeListener: Called after the edge was set directed or undirected.
postDirectedChanged(EdgeEvent) - Method in class org.graffiti.event.EdgeAdapter
postDirectedChanged(EdgeEvent) - Method in interface org.graffiti.event.EdgeListener: Called after the edge was set directed or undirected.
postDirectedChanged(EdgeEvent) - Method in class org.graffiti.event.ListenerManager: Called after the edge was set directed or undirected.
postDirectedChanged(EdgeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
postDirectedChanged(EdgeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called after the edge was set directed or undirected.
postDirectedChanged(EdgeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called after the edge was set directed or undirected.
postDirectedChanged(EdgeEvent) - Method in class org.graffiti.plugins.views.defaults.GraffitiView: Called after the edge was set directed or undirected.
postDirectedChanged(EdgeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
postDirectedChanged(EdgeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called after the edge was set directed or undirected.
postEdgeAdded(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
postEdgeAdded(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
postEdgeAdded(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation.NavigationComponentView
postEdgeAdded(GraphEvent) - Method in class org.graffiti.editor.StatusBar
postEdgeAdded(GraphEvent) - Method in class org.graffiti.event.AbstractGraphListener: Called after an edge has been added to the graph.
postEdgeAdded(GraphEvent) - Method in class org.graffiti.event.GraphAdapter
postEdgeAdded(GraphEvent) - Method in interface org.graffiti.event.GraphListener: Called after an edge has been added to the graph.
postEdgeAdded(GraphEvent) - Method in class org.graffiti.event.ListenerManager: Called after an edge has been added to the graph.
postEdgeAdded(GraphEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
postEdgeAdded(GraphEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called after an edge has been added to the graph.
postEdgeAdded(GraphEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called after an edge has been added to the graph.
postEdgeAdded(GraphEvent) - Method in class org.graffiti.plugins.views.defaults.GraffitiView: Called after an edge has been added to the graph.
postEdgeAdded(GraphEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixModel
postEdgeAdded(GraphEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
postEdgeAdded(GraphEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called after an edge has been added to the graph.
postEdgeRemoved(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
postEdgeRemoved(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
postEdgeRemoved(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation.NavigationComponentView
postEdgeRemoved(GraphEvent) - Method in class org.graffiti.editor.StatusBar
postEdgeRemoved(GraphEvent) - Method in class org.graffiti.event.AbstractGraphListener: Called after an edge has been removed from the graph.
postEdgeRemoved(GraphEvent) - Method in class org.graffiti.event.GraphAdapter
postEdgeRemoved(GraphEvent) - Method in interface org.graffiti.event.GraphListener: Called after an edge has been removed from the graph.
postEdgeRemoved(GraphEvent) - Method in class org.graffiti.event.ListenerManager: Called after an edge has been removed from the graph.
postEdgeRemoved(GraphEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
postEdgeRemoved(GraphEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called after an edge has been removed from the graph.
postEdgeRemoved(GraphEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called after an edge has been removed from the graph.
postEdgeRemoved(GraphEvent) - Method in class org.graffiti.plugins.views.defaults.GraffitiView: Called after an edge has been removed from the graph.
postEdgeRemoved(GraphEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixModel
postEdgeRemoved(GraphEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
postEdgeRemoved(GraphEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called after an edge has been removed from the graph.
postEdgeReversed(EdgeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
postEdgeReversed(EdgeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
postEdgeReversed(EdgeEvent) - Method in class org.graffiti.event.AbstractEdgeListener: Called after the edge has been reversed.
postEdgeReversed(EdgeEvent) - Method in class org.graffiti.event.EdgeAdapter
postEdgeReversed(EdgeEvent) - Method in interface org.graffiti.event.EdgeListener: Called after the edge has been reversed.
postEdgeReversed(EdgeEvent) - Method in class org.graffiti.event.ListenerManager: Called after the edge has been reversed.
postEdgeReversed(EdgeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
postEdgeReversed(EdgeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called after the edge has been reversed.
postEdgeReversed(EdgeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called after the edge has been reversed.
postEdgeReversed(EdgeEvent) - Method in class org.graffiti.plugins.views.defaults.GraffitiView: Called after the edge has been reversed.
postEdgeReversed(EdgeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
postEdgeReversed(EdgeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called after the edge has been reversed.
postGraphCleared(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
postGraphCleared(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
postGraphCleared(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation.NavigationComponentView
postGraphCleared(GraphEvent) - Method in class org.graffiti.editor.StatusBar
postGraphCleared(GraphEvent) - Method in class org.graffiti.event.AbstractGraphListener: Called after method clear() has been called on a graph.
postGraphCleared(GraphEvent) - Method in class org.graffiti.event.GraphAdapter
postGraphCleared(GraphEvent) - Method in interface org.graffiti.event.GraphListener: Called after method clear() has been called on a graph.
postGraphCleared(GraphEvent) - Method in class org.graffiti.event.ListenerManager: Called after method clear() has been called on a graph.
postGraphCleared(GraphEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
postGraphCleared(GraphEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called after method clear() has been called on a graph.
postGraphCleared(GraphEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called after method clear() has been called on a graph.
postGraphCleared(GraphEvent) - Method in class org.graffiti.plugins.views.defaults.GraffitiView: Called after method clear() has been called on a graph.
postGraphCleared(GraphEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixModel
postGraphCleared(GraphEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
postGraphCleared(GraphEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called after method clear() has been called on a graph.
postInEdgeAdded(NodeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
postInEdgeAdded(NodeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
postInEdgeAdded(NodeEvent) - Method in class org.graffiti.event.AbstractNodeListener: Called just after an incoming edge has been added to the node.
postInEdgeAdded(NodeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
postInEdgeAdded(NodeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called just after an incoming edge has been added to the node.
postInEdgeAdded(NodeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called just after an incoming edge has been added to the node.
postInEdgeAdded(NodeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
postInEdgeAdded(NodeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called just after an incoming edge has been added to the node.
postInEdgeRemoved(NodeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
postInEdgeRemoved(NodeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
postInEdgeRemoved(NodeEvent) - Method in class org.graffiti.event.AbstractNodeListener: Called after an incoming edge has been removed from the node.
postInEdgeRemoved(NodeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
postInEdgeRemoved(NodeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called after an incoming edge has been removed from the node.
postInEdgeRemoved(NodeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called after an incoming edge has been removed from the node.
postInEdgeRemoved(NodeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
postInEdgeRemoved(NodeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called after an incoming edge has been removed from the node.
postNodeAdded(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
postNodeAdded(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKGraffitiView
postNodeAdded(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
postNodeAdded(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation.NavigationComponentView
postNodeAdded(GraphEvent) - Method in class org.graffiti.editor.StatusBar
postNodeAdded(GraphEvent) - Method in class org.graffiti.event.AbstractGraphListener: Called after an edge has been added to the graph.
postNodeAdded(GraphEvent) - Method in class org.graffiti.event.GraphAdapter
postNodeAdded(GraphEvent) - Method in interface org.graffiti.event.GraphListener: Called after an edge has been added to the graph.
postNodeAdded(GraphEvent) - Method in class org.graffiti.event.ListenerManager: Called after an edge has been added to the graph.
postNodeAdded(GraphEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
postNodeAdded(GraphEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called after an edge has been added to the graph.
postNodeAdded(GraphEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called after an edge has been added to the graph.
postNodeAdded(GraphEvent) - Method in class org.graffiti.plugins.views.defaults.GraffitiView: Called after an edge has been added to the graph.
postNodeAdded(GraphEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixModel
postNodeAdded(GraphEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
postNodeAdded(GraphEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called after an edge has been added to the graph.
postNodeRemoved(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
postNodeRemoved(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKGraffitiView
postNodeRemoved(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
postNodeRemoved(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation.NavigationComponentView
postNodeRemoved(GraphEvent) - Method in class org.graffiti.editor.StatusBar
postNodeRemoved(GraphEvent) - Method in class org.graffiti.event.AbstractGraphListener: Called after a node has been removed from the graph.
postNodeRemoved(GraphEvent) - Method in class org.graffiti.event.GraphAdapter
postNodeRemoved(GraphEvent) - Method in interface org.graffiti.event.GraphListener: Called after a node has been removed from the graph.
postNodeRemoved(GraphEvent) - Method in class org.graffiti.event.ListenerManager: Called after a node has been removed from the graph.
postNodeRemoved(GraphEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
postNodeRemoved(GraphEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called after a node has been removed from the graph.
postNodeRemoved(GraphEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called after a node has been removed from the graph.
postNodeRemoved(GraphEvent) - Method in class org.graffiti.plugins.views.defaults.GraffitiView: Called after a node has been removed from the graph.
postNodeRemoved(GraphEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixModel
postNodeRemoved(GraphEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
postNodeRemoved(GraphEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called after a node has been removed from the graph.
postOutEdgeAdded(NodeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
postOutEdgeAdded(NodeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
postOutEdgeAdded(NodeEvent) - Method in class org.graffiti.event.AbstractNodeListener: Called after an outgoing edge has been added to the node.
postOutEdgeAdded(NodeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
postOutEdgeAdded(NodeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called after an outgoing edge has been added to the node.
postOutEdgeAdded(NodeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called after an outgoing edge has been added to the node.
postOutEdgeAdded(NodeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
postOutEdgeAdded(NodeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called after an outgoing edge has been added to the node.
postOutEdgeRemoved(NodeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
postOutEdgeRemoved(NodeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
postOutEdgeRemoved(NodeEvent) - Method in class org.graffiti.event.AbstractNodeListener: Called after an outgoing edge has been removed from the node.
postOutEdgeRemoved(NodeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
postOutEdgeRemoved(NodeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called after an outgoing edge has been removed from the node.
postOutEdgeRemoved(NodeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called after an outgoing edge has been removed from the node.
postOutEdgeRemoved(NodeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
postOutEdgeRemoved(NodeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called after an outgoing edge has been removed from the node.
postProcessImageCreation() - Method in interface org.graffiti.plugin.tool.Tool
postProcessImageCreation() - Method in class org.graffiti.plugins.modes.defaults.MegaTools
postSourceNodeChanged(EdgeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
postSourceNodeChanged(EdgeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
postSourceNodeChanged(EdgeEvent) - Method in class org.graffiti.event.AbstractEdgeListener: Called after the source node of an edge has changed.
postSourceNodeChanged(EdgeEvent) - Method in class org.graffiti.event.EdgeAdapter
postSourceNodeChanged(EdgeEvent) - Method in interface org.graffiti.event.EdgeListener: Called after the source node of an edge has changed.
postSourceNodeChanged(EdgeEvent) - Method in class org.graffiti.event.ListenerManager: Called after the source node of an edge has changed.
postSourceNodeChanged(EdgeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
postSourceNodeChanged(EdgeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called after the source node of an edge has changed.
postSourceNodeChanged(EdgeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called after the source node of an edge has changed.
postSourceNodeChanged(EdgeEvent) - Method in class org.graffiti.plugins.views.defaults.GraffitiView: Called after the source node of an edge has changed.
postSourceNodeChanged(EdgeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
postSourceNodeChanged(EdgeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called after the source node of an edge has changed.
postTargetNodeChanged(EdgeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
postTargetNodeChanged(EdgeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
postTargetNodeChanged(EdgeEvent) - Method in class org.graffiti.event.AbstractEdgeListener: Called after the target node of an edge has changed.
postTargetNodeChanged(EdgeEvent) - Method in class org.graffiti.event.EdgeAdapter
postTargetNodeChanged(EdgeEvent) - Method in interface org.graffiti.event.EdgeListener: Called after the target node of an edge has changed.
postTargetNodeChanged(EdgeEvent) - Method in class org.graffiti.event.ListenerManager: Called after the target node of an edge has changed.
postTargetNodeChanged(EdgeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
postTargetNodeChanged(EdgeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called after the target node of an edge has changed.
postTargetNodeChanged(EdgeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called after the target node of an edge has changed.
postTargetNodeChanged(EdgeEvent) - Method in class org.graffiti.plugins.views.defaults.GraffitiView: Called after the target node of an edge has changed.
postTargetNodeChanged(EdgeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
postTargetNodeChanged(EdgeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called after the target node of an edge has changed.
postUndirectedEdgeAdded(NodeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
postUndirectedEdgeAdded(NodeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
postUndirectedEdgeAdded(NodeEvent) - Method in class org.graffiti.event.AbstractNodeListener: Called after an (undirected) edge has been added to the node.
postUndirectedEdgeAdded(NodeEvent) - Method in class org.graffiti.event.ListenerManager: Called after an (undirected) edge has been added to the node.
postUndirectedEdgeAdded(NodeEvent) - Method in class org.graffiti.event.NodeAdapter
postUndirectedEdgeAdded(NodeEvent) - Method in interface org.graffiti.event.NodeListener: Called after an (undirected) edge has been added to the node.
postUndirectedEdgeAdded(NodeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
postUndirectedEdgeAdded(NodeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called after an (undirected) edge has been added to the node.
postUndirectedEdgeAdded(NodeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called after an (undirected) edge has been added to the node.
postUndirectedEdgeAdded(NodeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
postUndirectedEdgeAdded(NodeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called after an (undirected) edge has been added to the node.
postUndirectedEdgeRemoved(NodeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
postUndirectedEdgeRemoved(NodeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
postUndirectedEdgeRemoved(NodeEvent) - Method in class org.graffiti.event.AbstractNodeListener: Called after an (undirected) edge has been removed from the node.
postUndirectedEdgeRemoved(NodeEvent) - Method in class org.graffiti.event.ListenerManager: Called after an (undirected) edge has been removed from the node.
postUndirectedEdgeRemoved(NodeEvent) - Method in class org.graffiti.event.NodeAdapter
postUndirectedEdgeRemoved(NodeEvent) - Method in interface org.graffiti.event.NodeListener: Called after an (undirected) edge has been removed from the node.
postUndirectedEdgeRemoved(NodeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
postUndirectedEdgeRemoved(NodeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called after an (undirected) edge has been removed from the node.
postUndirectedEdgeRemoved(NodeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called after an (undirected) edge has been removed from the node.
postUndirectedEdgeRemoved(NodeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
postUndirectedEdgeRemoved(NodeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called after an (undirected) edge has been removed from the node.
postUndoableChanges(Graph, HashMap<CoordinateAttribute, Vector2d>, HashMap<CoordinateAttribute, Vector2d>, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper
postUndoableChanges3d(Graph, HashMap<CoordinateAttribute, Vector3d>, HashMap<CoordinateAttribute, Vector3d>, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper
postUndoableNodeAndEdgeAdditions(Graph, HashSet<Node>, HashSet<Edge>, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper
postWorkflowStep(String, String[], String[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.WorkflowHelper: Deprecated.
postWorkflowStep(String, String[], String[]) - Method in interface scenario.ScenarioGui
postWorkflowStep(String, String[], String[]) - Static method in class scenario.ScenarioService
postWorkflowStep(Action) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.WorkflowHelper: Deprecated.
postWorkflowStep(Action) - Method in interface scenario.ScenarioGui
postWorkflowStep(Action) - Static method in class scenario.ScenarioService
postWorkflowStep(Algorithm, Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.WorkflowHelper: Deprecated.
postWorkflowStep(Algorithm, Parameter[]) - Method in interface scenario.ScenarioGui
postWorkflowStep(Algorithm, Parameter[]) - Static method in class scenario.ScenarioService
PosV(double) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.StatisticTable
PovrayWriter - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.pajek
PovrayWriter() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.pajek.PovrayWriter
PowerFunction2D - Class in org.jfree.data: A function of the form y = a * x ^ b.
PowerFunction2D(double, double) - Constructor for class org.jfree.data.PowerFunction2D: Creates a new power function.
PPrel - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.RelationType
PPTAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.ppt_exporter: Provides a PPT writer.
PPTAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.ppt_exporter.PPTAlgorithm
preAttributeAdded(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
preAttributeAdded(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
preAttributeAdded(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkTab
preAttributeAdded(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics
preAttributeAdded(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPatternLayout
preAttributeAdded(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPluginControl
preAttributeAdded(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabVisualisationControl: Deprecated.
preAttributeAdded(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.WorkflowHelper: Deprecated.
preAttributeAdded(AttributeEvent) - Method in class org.graffiti.event.AbstractAttributeListener: Called just before an attribute is added.
preAttributeAdded(AttributeEvent) - Method in class org.graffiti.event.AttributeAdapter
preAttributeAdded(AttributeEvent) - Method in interface org.graffiti.event.AttributeListener: Called just before an attribute is added.
preAttributeAdded(AttributeEvent) - Method in class org.graffiti.event.ListenerManager: Called just before an attribute is added.
preAttributeAdded(AttributeEvent) - Method in class org.graffiti.plugin.editcomponent.GraphComponentEditComponent: Called just before an attribute is added.
preAttributeAdded(AttributeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
preAttributeAdded(AttributeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called just before an attribute is added.
preAttributeAdded(AttributeEvent) - Method in class org.graffiti.plugin.inspector.SubtabHostTab
preAttributeAdded(AttributeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called just before an attribute is added.
preAttributeAdded(AttributeEvent) - Method in class org.graffiti.plugins.inspectors.defaults.AbstractTab: Called just before an attribute is added.
preAttributeAdded(AttributeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
preAttributeAdded(AttributeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called just before an attribute is added.
preAttributeChanged(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
preAttributeChanged(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
preAttributeChanged(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkTab
preAttributeChanged(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics
preAttributeChanged(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPatternLayout
preAttributeChanged(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPluginControl
preAttributeChanged(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabVisualisationControl: Deprecated.
preAttributeChanged(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.WorkflowHelper: Deprecated.
preAttributeChanged(AttributeEvent) - Method in class org.graffiti.event.AbstractAttributeListener: Called before a change of an attribute takes place.
preAttributeChanged(AttributeEvent) - Method in class org.graffiti.event.AttributeAdapter
preAttributeChanged(AttributeEvent) - Method in interface org.graffiti.event.AttributeListener: Called before a change of an attribute takes place.
preAttributeChanged(AttributeEvent) - Method in class org.graffiti.event.ListenerManager: Called before a change of an attribute takes place.
preAttributeChanged(AttributeEvent) - Method in class org.graffiti.plugin.editcomponent.AbstractValueEditComponent: Called before a change of an displayable takes place.
preAttributeChanged(AttributeEvent) - Method in class org.graffiti.plugin.editcomponent.GraphComponentEditComponent: Called before a change of an attribute takes place.
preAttributeChanged(AttributeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
preAttributeChanged(AttributeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called before a change of an attribute takes place.
preAttributeChanged(AttributeEvent) - Method in class org.graffiti.plugin.inspector.SubtabHostTab
preAttributeChanged(AttributeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called before a change of an attribute takes place.
preAttributeChanged(AttributeEvent) - Method in class org.graffiti.plugins.inspectors.defaults.AbstractTab: Called before a change of an attribute takes place.
preAttributeChanged(AttributeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
preAttributeChanged(AttributeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called before a change of an attribute takes place.
preAttributeRemoved(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
preAttributeRemoved(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
preAttributeRemoved(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkTab
preAttributeRemoved(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics
preAttributeRemoved(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPatternLayout
preAttributeRemoved(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPluginControl
preAttributeRemoved(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabVisualisationControl: Deprecated.
preAttributeRemoved(AttributeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.WorkflowHelper: Deprecated.
preAttributeRemoved(AttributeEvent) - Method in class org.graffiti.event.AbstractAttributeListener: Called just before an attribute is removed.
preAttributeRemoved(AttributeEvent) - Method in class org.graffiti.event.AttributeAdapter
preAttributeRemoved(AttributeEvent) - Method in interface org.graffiti.event.AttributeListener: Called just before an attribute is removed.
preAttributeRemoved(AttributeEvent) - Method in class org.graffiti.event.ListenerManager: Called just before an attribute is removed.
preAttributeRemoved(AttributeEvent) - Method in class org.graffiti.plugin.editcomponent.GraphComponentEditComponent: Called just before an attribute is removed.
preAttributeRemoved(AttributeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
preAttributeRemoved(AttributeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called just before an attribute is removed.
preAttributeRemoved(AttributeEvent) - Method in class org.graffiti.plugin.inspector.SubtabHostTab
preAttributeRemoved(AttributeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called just before an attribute is removed.
preAttributeRemoved(AttributeEvent) - Method in class org.graffiti.plugins.inspectors.defaults.AbstractTab: Called just before an attribute is removed.
preAttributeRemoved(AttributeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
preAttributeRemoved(AttributeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called just before an attribute is removed.
PreconditionException - Exception in org.graffiti.plugin.algorithm: Throws in the context of precondition failures.
PreconditionException() - Constructor for exception org.graffiti.plugin.algorithm.PreconditionException: Creates a new PreconditionException object.
PreconditionException(String) - Constructor for exception org.graffiti.plugin.algorithm.PreconditionException: Creates a new PreconditionException object.
preDirectedChanged(EdgeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
preDirectedChanged(EdgeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
preDirectedChanged(EdgeEvent) - Method in class org.graffiti.event.AbstractEdgeListener: Called before the edge is set directed or undirected.
preDirectedChanged(EdgeEvent) - Method in class org.graffiti.event.EdgeAdapter
preDirectedChanged(EdgeEvent) - Method in interface org.graffiti.event.EdgeListener: Called before the edge is set directed or undirected.
preDirectedChanged(EdgeEvent) - Method in class org.graffiti.event.ListenerManager: Called before the edge is set directed or undirected.
preDirectedChanged(EdgeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
preDirectedChanged(EdgeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called before the edge is set directed or undirected.
preDirectedChanged(EdgeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called before the edge is set directed or undirected.
preDirectedChanged(EdgeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
preDirectedChanged(EdgeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called before the edge is set directed or undirected.
preEdgeAdded(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
preEdgeAdded(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
preEdgeAdded(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation.NavigationComponentView
preEdgeAdded(GraphEvent) - Method in class org.graffiti.editor.StatusBar
preEdgeAdded(GraphEvent) - Method in class org.graffiti.event.AbstractGraphListener: Called just before an edge is added to the graph.
preEdgeAdded(GraphEvent) - Method in class org.graffiti.event.GraphAdapter
preEdgeAdded(GraphEvent) - Method in interface org.graffiti.event.GraphListener: Called just before an edge is added to the graph.
preEdgeAdded(GraphEvent) - Method in class org.graffiti.event.ListenerManager: Called just before an edge is added to the graph.
preEdgeAdded(GraphEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
preEdgeAdded(GraphEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called just before an edge is added to the graph.
preEdgeAdded(GraphEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called just before an edge is added to the graph.
preEdgeAdded(GraphEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixModel
preEdgeAdded(GraphEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
preEdgeAdded(GraphEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called just before an edge is added to the graph.
preEdgeRemoved(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
preEdgeRemoved(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
preEdgeRemoved(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation.NavigationComponentView
preEdgeRemoved(GraphEvent) - Method in class org.graffiti.editor.StatusBar
preEdgeRemoved(GraphEvent) - Method in class org.graffiti.event.AbstractGraphListener: Called just before an edge is removed from the graph.
preEdgeRemoved(GraphEvent) - Method in class org.graffiti.event.GraphAdapter
preEdgeRemoved(GraphEvent) - Method in interface org.graffiti.event.GraphListener: Called just before an edge is removed from the graph.
preEdgeRemoved(GraphEvent) - Method in class org.graffiti.event.ListenerManager: Called just before an edge is removed from the graph.
preEdgeRemoved(GraphEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
preEdgeRemoved(GraphEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called just before an edge is removed from the graph.
preEdgeRemoved(GraphEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called just before an edge is removed from the graph.
preEdgeRemoved(GraphEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixModel
preEdgeRemoved(GraphEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
preEdgeRemoved(GraphEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called just before an edge is removed from the graph.
preEdgeReversed(EdgeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
preEdgeReversed(EdgeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
preEdgeReversed(EdgeEvent) - Method in class org.graffiti.event.AbstractEdgeListener: Called before the edge is going to be reversed.
preEdgeReversed(EdgeEvent) - Method in class org.graffiti.event.EdgeAdapter
preEdgeReversed(EdgeEvent) - Method in interface org.graffiti.event.EdgeListener: Called before the edge is going to be reversed.
preEdgeReversed(EdgeEvent) - Method in class org.graffiti.event.ListenerManager: Called before the edge is going to be reversed.
preEdgeReversed(EdgeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
preEdgeReversed(EdgeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called before the edge is going to be reversed.
preEdgeReversed(EdgeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called before the edge is going to be reversed.
preEdgeReversed(EdgeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
preEdgeReversed(EdgeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called before the edge is going to be reversed.
PREF_DRAWRECT_MINSIZE - Static variable in class org.graffiti.plugins.attributecomponents.simplelabel.LabelComponent
PREF_MINSIZE_VISIBILITY - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartAttributeComponent
PREF_MINSIZE_VISIBILITY - Static variable in class org.graffiti.plugins.attributecomponents.simplelabel.LabelComponent
PREFERENCE - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.FeedDownloadType
PREFERENCE_DEBUG_SHOWPANELFRAMES - Static variable in class org.vanted.VantedPreferences
PREFERENCE_DEBUG_SHOWPANELFRAMES_VALUE - Static variable in class org.vanted.VantedPreferences
PREFERENCE_KEGGACCESS - Static variable in class org.vanted.VantedPreferences
PREFERENCE_LOOKANDFEEL - Static variable in class org.vanted.VantedPreferences
PREFERENCE_PROXYHOST - Static variable in class org.vanted.VantedPreferences
PREFERENCE_PROXYPORT - Static variable in class org.vanted.VantedPreferences
PREFERENCE_SHOWALL_ALGORITHMS - Static variable in class org.vanted.VantedPreferences
PREFERENCE_STANDARD_SAVE_FILEFORMAT - Static variable in class org.vanted.VantedPreferences
PREFERENCE_TAB_SHOW - Static variable in class org.graffiti.plugin.inspector.InspectorTab
PreferenceManager - Class in org.graffiti.managers
PreferencePanel - Class in org.graffiti.options
PreferencePanel() - Constructor for class org.graffiti.options.PreferencePanel
PREFERENCES_GET - Static variable in class org.vanted.scaling.DPIHelper: Specify when you get Preferences value.
PREFERENCES_MAC_LAF - Static variable in class org.vanted.scaling.vanted.HighDPISupport
PREFERENCES_SET - Static variable in class org.vanted.scaling.DPIHelper: Specify when you set Preferences value.
PreferencesDialog - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings
PreferencesDialog() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings.PreferencesDialog
PreferencesInterface - Interface in org.graffiti.options: Classes that want to provide settings that will be stored in a settings file and that want to be user-configurable can implement this interface.
PreferencesUpdater - Class in org.vanted.updater: Updates any previously stored old links from preferences.
PreferencesUpdater() - Constructor for class org.vanted.updater.PreferencesUpdater
PREFERRED - Static variable in interface info.clearthought.layout.TableLayoutConstants: Indicates that the row/column should be allocated just enough space to accommodate the preferred size of all components contained completely within this row/column.
PREFERRED_INTERNALFRAME_SIZE - Static variable in class org.graffiti.editor.MainFrame: The size of an internal frame for first displaying.
PREFERRED_SIZE - Static variable in class org.jfree.chart.demo.DescriptionPanel: The preferred size for the panel.
PREFERRED_SIZE - Static variable in class org.jfree.chart.demo.JFreeChartDemo: The preferred size for the frame.
preferredLayoutSize(Container) - Method in class info.clearthought.layout.SingleFiledLayout: Determines the preferred size of the container argument using this layout.
preferredLayoutSize(Container) - Method in class info.clearthought.layout.TableLayout: Determines the preferred size of the container argument using this layout.
preferredLayoutSize(Container) - Method in class org.graffiti.util.MaximizeLayout
preferredLayoutSize(Container) - Method in class org.graffiti.util.ToolBarLayout
preFilePath - Static variable in class org.AttributeHelper
PREFIX - Static variable in class org.graffiti.plugin.io.resources.FileSystemHandler
PREFIX - Static variable in class org.graffiti.plugin.io.resources.FTPhandler
PREFIX - Static variable in class org.graffiti.plugin.io.resources.HTTPhandler
PREFIX - Static variable in class org.graffiti.plugin.io.resources.HTTPShandler
preGraphCleared(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
preGraphCleared(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
preGraphCleared(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation.NavigationComponentView
preGraphCleared(GraphEvent) - Method in class org.graffiti.editor.StatusBar
preGraphCleared(GraphEvent) - Method in class org.graffiti.event.AbstractGraphListener: Called before method clear() is called on a graph.
preGraphCleared(GraphEvent) - Method in class org.graffiti.event.GraphAdapter
preGraphCleared(GraphEvent) - Method in interface org.graffiti.event.GraphListener: Called before method clear() is called on a graph.
preGraphCleared(GraphEvent) - Method in class org.graffiti.event.ListenerManager: Called before method clear() is called on a graph.
preGraphCleared(GraphEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
preGraphCleared(GraphEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called before method clear() is called on a graph.
preGraphCleared(GraphEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called before method clear() is called on a graph.
preGraphCleared(GraphEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixModel
preGraphCleared(GraphEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
preGraphCleared(GraphEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called before method clear() is called on a graph.
preInEdgeAdded(NodeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
preInEdgeAdded(NodeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
preInEdgeAdded(NodeEvent) - Method in class org.graffiti.event.AbstractNodeListener: Called just before an incoming edge is added to the node.
preInEdgeAdded(NodeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
preInEdgeAdded(NodeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called just before an incoming edge is added to the node.
preInEdgeAdded(NodeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called just before an incoming edge is added to the node.
preInEdgeAdded(NodeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
preInEdgeAdded(NodeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called just before an incoming edge is added to the node.
preInEdgeRemoved(NodeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
preInEdgeRemoved(NodeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
preInEdgeRemoved(NodeEvent) - Method in class org.graffiti.event.AbstractNodeListener: Called just before an incoming edge is removed from the node.
preInEdgeRemoved(NodeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
preInEdgeRemoved(NodeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called just before an incoming edge is removed from the node.
preInEdgeRemoved(NodeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called just before an incoming edge is removed from the node.
preInEdgeRemoved(NodeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
preInEdgeRemoved(NodeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called just before an incoming edge is removed from the node.
preNodeAdded(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
preNodeAdded(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
preNodeAdded(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation.NavigationComponentView
preNodeAdded(GraphEvent) - Method in class org.graffiti.editor.StatusBar
preNodeAdded(GraphEvent) - Method in class org.graffiti.event.AbstractGraphListener: Called just before a node is added to the graph.
preNodeAdded(GraphEvent) - Method in class org.graffiti.event.GraphAdapter
preNodeAdded(GraphEvent) - Method in interface org.graffiti.event.GraphListener: Called just before a node is added to the graph.
preNodeAdded(GraphEvent) - Method in class org.graffiti.event.ListenerManager: Called just before a node is added to the graph.
preNodeAdded(GraphEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
preNodeAdded(GraphEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called just before a node is added to the graph.
preNodeAdded(GraphEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called just before a node is added to the graph.
preNodeAdded(GraphEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixModel
preNodeAdded(GraphEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
preNodeAdded(GraphEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called just before a node is added to the graph.
preNodeRemoved(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
preNodeRemoved(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
preNodeRemoved(GraphEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation.NavigationComponentView
preNodeRemoved(GraphEvent) - Method in class org.graffiti.editor.StatusBar
preNodeRemoved(GraphEvent) - Method in class org.graffiti.event.AbstractGraphListener: Called just before a node is removed from the graph.
preNodeRemoved(GraphEvent) - Method in class org.graffiti.event.GraphAdapter
preNodeRemoved(GraphEvent) - Method in interface org.graffiti.event.GraphListener: Called just before a node is removed from the graph.
preNodeRemoved(GraphEvent) - Method in class org.graffiti.event.ListenerManager: Called just before a node is removed from the graph.
preNodeRemoved(GraphEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
preNodeRemoved(GraphEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called just before a node is removed from the graph.
preNodeRemoved(GraphEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called just before a node is removed from the graph.
preNodeRemoved(GraphEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixModel
preNodeRemoved(GraphEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
preNodeRemoved(GraphEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called just before a node is removed from the graph.
preOutEdgeAdded(NodeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
preOutEdgeAdded(NodeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
preOutEdgeAdded(NodeEvent) - Method in class org.graffiti.event.AbstractNodeListener: Called just before an outgoing edge is added to the node.
preOutEdgeAdded(NodeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
preOutEdgeAdded(NodeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called just before an outgoing edge is added to the node.
preOutEdgeAdded(NodeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called just before an outgoing edge is added to the node.
preOutEdgeAdded(NodeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
preOutEdgeAdded(NodeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called just before an outgoing edge is added to the node.
preOutEdgeRemoved(NodeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
preOutEdgeRemoved(NodeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
preOutEdgeRemoved(NodeEvent) - Method in class org.graffiti.event.AbstractNodeListener: Called just before an outgoing edge is removed from the node.
preOutEdgeRemoved(NodeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
preOutEdgeRemoved(NodeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called just before an outgoing edge is removed from the node.
preOutEdgeRemoved(NodeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called just before an outgoing edge is removed from the node.
preOutEdgeRemoved(NodeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
preOutEdgeRemoved(NodeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called just before an outgoing edge is removed from the node.
prepareSearch() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchAttributeHelper
preProcessImageCreation() - Method in interface org.graffiti.plugin.tool.Tool
preProcessImageCreation() - Method in class org.graffiti.plugins.modes.defaults.MegaTools
preprocessingGroup - Variable in class org.vanted.plugins.layout.stressminimization.StressMinParamModel
preSourceNodeChanged(EdgeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
preSourceNodeChanged(EdgeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
preSourceNodeChanged(EdgeEvent) - Method in class org.graffiti.event.AbstractEdgeListener: Called before a change of the source node of an edge takes place.
preSourceNodeChanged(EdgeEvent) - Method in class org.graffiti.event.EdgeAdapter
preSourceNodeChanged(EdgeEvent) - Method in interface org.graffiti.event.EdgeListener: Called before a change of the source node of an edge takes place.
preSourceNodeChanged(EdgeEvent) - Method in class org.graffiti.event.ListenerManager: Called before a change of the source node of an edge takes place.
preSourceNodeChanged(EdgeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
preSourceNodeChanged(EdgeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called before a change of the source node of an edge takes place.
preSourceNodeChanged(EdgeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called before a change of the source node of an edge takes place.
preSourceNodeChanged(EdgeEvent) - Method in class org.graffiti.plugins.views.defaults.GraffitiView: Called before a change of the source node of an edge takes place.
preSourceNodeChanged(EdgeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
preSourceNodeChanged(EdgeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called before a change of the source node of an edge takes place.
preTargetNodeChanged(EdgeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
preTargetNodeChanged(EdgeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
preTargetNodeChanged(EdgeEvent) - Method in class org.graffiti.event.AbstractEdgeListener: Called before a change of the target node of an edge takes place.
preTargetNodeChanged(EdgeEvent) - Method in class org.graffiti.event.EdgeAdapter
preTargetNodeChanged(EdgeEvent) - Method in interface org.graffiti.event.EdgeListener: Called before a change of the target node of an edge takes place.
preTargetNodeChanged(EdgeEvent) - Method in class org.graffiti.event.ListenerManager: Called before a change of the target node of an edge takes place.
preTargetNodeChanged(EdgeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
preTargetNodeChanged(EdgeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called before a change of the target node of an edge takes place.
preTargetNodeChanged(EdgeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called before a change of the target node of an edge takes place.
preTargetNodeChanged(EdgeEvent) - Method in class org.graffiti.plugins.views.defaults.GraffitiView: Called before a change of the target node of an edge takes place.
preTargetNodeChanged(EdgeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
preTargetNodeChanged(EdgeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called before a change of the target node of an edge takes place.
pretifyPluginList(Collection<PluginEntry>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_dbe.PluginInfoHelper
prettifyChart(GraphElement, ChartOptions, String, JFreeChart) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.XmlDataChartComponent
PrettyObject - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow
PrettyObject(Object, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.PrettyObject
preUndirectedEdgeAdded(NodeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
preUndirectedEdgeAdded(NodeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
preUndirectedEdgeAdded(NodeEvent) - Method in class org.graffiti.event.AbstractNodeListener: Called just before an (undirected) edge is added to the node.
preUndirectedEdgeAdded(NodeEvent) - Method in class org.graffiti.event.ListenerManager: Called just before an (undirected) edge is added to the node.
preUndirectedEdgeAdded(NodeEvent) - Method in class org.graffiti.event.NodeAdapter
preUndirectedEdgeAdded(NodeEvent) - Method in interface org.graffiti.event.NodeListener: Called just before an (undirected) edge is added to the node.
preUndirectedEdgeAdded(NodeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
preUndirectedEdgeAdded(NodeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called just before an (undirected) edge is added to the node.
preUndirectedEdgeAdded(NodeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called just before an (undirected) edge is added to the node.
preUndirectedEdgeAdded(NodeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
preUndirectedEdgeAdded(NodeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called just before an (undirected) edge is added to the node.
preUndirectedEdgeRemoved(NodeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
preUndirectedEdgeRemoved(NodeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
preUndirectedEdgeRemoved(NodeEvent) - Method in class org.graffiti.event.AbstractNodeListener: Called just before an (undirected) edge is removed from the node.
preUndirectedEdgeRemoved(NodeEvent) - Method in class org.graffiti.event.ListenerManager: Called just before an (undirected) edge is removed from the node.
preUndirectedEdgeRemoved(NodeEvent) - Method in class org.graffiti.event.NodeAdapter
preUndirectedEdgeRemoved(NodeEvent) - Method in interface org.graffiti.event.NodeListener: Called just before an (undirected) edge is removed from the node.
preUndirectedEdgeRemoved(NodeEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
preUndirectedEdgeRemoved(NodeEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter: Called just before an (undirected) edge is removed from the node.
preUndirectedEdgeRemoved(NodeEvent) - Method in class org.graffiti.plugin.view.AbstractView: Called just before an (undirected) edge is removed from the node.
preUndirectedEdgeRemoved(NodeEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
preUndirectedEdgeRemoved(NodeEvent) - Method in class org.graffiti.session.GraphConstraintChecker: Called just before an (undirected) edge is removed from the node.
previous() - Method in class org.jfree.data.time.Day: Returns the day preceding this one.
previous() - Method in class org.jfree.data.time.FixedMillisecond: Returns the millisecond preceding this one.
previous() - Method in class org.jfree.data.time.Hour: Returns the hour preceding this one.
previous() - Method in class org.jfree.data.time.Millisecond: Returns the millisecond preceding this one.
previous() - Method in class org.jfree.data.time.Minute: Returns the minute preceding this one.
previous() - Method in class org.jfree.data.time.Month: Returns the month preceding this one.
previous() - Method in class org.jfree.data.time.Quarter: Returns the quarter preceding this one.
previous() - Method in class org.jfree.data.time.RegularTimePeriod: Returns the time period preceding this one, or null if some lower limit has been reached.
previous() - Method in class org.jfree.data.time.Second: Returns the second preceding this one.
previous() - Method in class org.jfree.data.time.Week: Returns the week preceding this one.
previous() - Method in class org.jfree.data.time.Year: Returns the year preceding this one.
PriceVolumeDemo - Class in org.jfree.chart.demo: A demonstration application showing how to create a price-volume chart.
PriceVolumeDemo(String) - Constructor for class org.jfree.chart.demo.PriceVolumeDemo: Constructs a new demonstration application.
print(Graphics) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
print(Graphics, PageFormat, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
print(Graphics, PageFormat, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKGraffitiView
print(Graphics, PageFormat, int) - Method in class org.jfree.chart.ChartPanel: Prints the chart on a single page.
print(Graphics, PageFormat, int) - Method in class placement.RectangleDrawerPanel
print(Collection<View>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.PrintTool
print(View) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.PrintTool: Prints a View.
PRINT_ACTION_COMMAND - Static variable in interface org.jfree.chart.ChartPanelConstants: Print action command.
printAdjacencyMatrix(Node[], byte[][]) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.UllmannSubraphIsomAdjMatrixState
PrintAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.printer: The print algorithm.
PrintAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.printer.PrintAlgorithm
printCompatibilityMatrix() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.UllmannSubraphIsomAdjMatrixState
PrintEnvironment - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print: Encapsulates the properties of the printing Environment, like Zoom, colored printing, ...
PrintEnvironment() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.PrintEnvironment
printErrorMessageAndQuit(Connection, String, String, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.genophen.HTMLErrorMsg
printInProgress - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKGraffitiView
printMatrix() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DistanceMatrix
printMatrix() - Method in class qmwi.kseg.som.Map
printMessageToConsole() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayErrorInformation
printMessageToConsole() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayWarningInformation
printNodeLayout(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper
PrintPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.printer: This plugin provides a print feature.
PrintPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.printer.PrintPlugin: Empty constructor.
printSuccess(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.genophen.HTMLErrorMsg
printTodo() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathEntity
PrintTool - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print
PrintTool() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.PrintTool
PRIORITY_ANNOTATION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
PRIORITY_FUNCTION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
PRIORITY_META_ID - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
PRIORITY_NON_RDF_ANNOTATION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
PRIORITY_NOTES - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
PRIORITY_SBOTERM - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
process(File) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.ManageAddonDialog
process(List<File>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.AddonManagerPlugin
process(List<File>) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.DragAndDropHandler
process(List<File>) - Method in class de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoader
processAdditionaldentifiers(boolean, boolean, ExperimentInterface, BackgroundTaskStatusProviderSupportingExternalCall, double, double, StringBuilder, boolean, HashSet<Integer>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData
processAdditionaldentifiers(boolean, boolean, TableData, ExperimentInterface, BackgroundTaskStatusProviderSupportingExternalCall, double, double, StringBuilder, boolean, HashSet<Integer>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.AlternativeIdentifierTableData
processAdditionaldentifiers(boolean, TableData, ExperimentInterface, BackgroundTaskStatusProviderSupportingExternalCall, double, double, StringBuilder, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.AlternativeIdentifierTableData
processAffymetrixAnnotationColumns(boolean, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData
processAvailableStdDevSubstanceData(Document, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper: (1) search substance names which end with substanceStdDevEndID (2) for each substance get all experiment/genotype/line/time combinations enclosed extract average sample values (3) use average sample values as sample stddev for corresponding substance/sample data whose substance name is the same as the one mentioned above, but without the trailing substanceStdDevEndID id.
processBendCreation(MouseEvent, Component) - Method in class org.graffiti.plugins.modes.defaults.MegaMoveTool
processCellContentRemoveStringTags(String, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData
processCreatedImageFile(File) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.ImageFileResultProcessor
processCreatedTabWebsiteFile(File) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.ImageFileResultProcessor
processCreatedWebsiteFile(File) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.ImageFileResultProcessor
processData() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping.DataMapping
processData() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.PutIntoSidePanel
processData(ExperimentInterface, AbstractExperimentDataProcessor, ActionEvent, JComponent, List<Runnable>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataProcessingManager
processData(String, String, ArrayList<MemSample>, ArrayList<MemPlant>, String, String, String, String, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentConstructor
processDefaultNodeDesign(Node, Entry) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Graphics
processDroppedFiles(File[], boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.GravistoMainHelper
processDroppedFiles(File[], boolean, Class<ExperimentDataProcessor>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.GravistoMainHelper
processEdgeAttElement(Attributes) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLContentHandler: Not yet implemented
processEdgeReactionInformation(Edge, ArrayList<ReactionAndInfo>, ArrayList<ReactionAndInfo>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Reaction
processEdgeRelationInformation(Edge, ArrayList<Relation>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation
processEmulatedDPIValue(int) - Static method in class org.vanted.scaling.DPIHelper: Converts a slider value into an Emulated DPI value.
processGOanno(String, String, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData
processGoHierarchy(PositionGridGenerator, HashMap<String, Node>, GoProcessing, String, Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.InterpreteGOtermsAlgorithm
processGoHierarchy(PositionGridGenerator, HashMap<String, Node>, GoProcessing, String, Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.InterpreteParentGOtermsAlgorithm
processGraphicsAttElement(Attributes) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLContentHandler: Not yet implemented
ProcessHierarchynodesDepOnLeafNodes - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram
ProcessHierarchynodesDepOnLeafNodes() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.ProcessHierarchynodesDepOnLeafNodes
processIncomingData(ExperimentInterface) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataProcessingManager
processIncomingData(ExperimentInterface, Class<ExperimentDataProcessor>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataProcessingManager
processIncomingData(ExperimentInterface, JComponent, List<Class<?>>, HashMap<Class<?>, List<Runnable>>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataProcessingManager
processIncomingData(ExperimentInterface, JComponent, List<Class<?>>, HashMap<Class<?>, List<Runnable>>, Class<ExperimentDataProcessor>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataProcessingManager
processInputLine(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeEntry
processInputLine(String, ArrayList<String>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionEntry
processInternalMapLinks(Graph, Pathway, Vector2d) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.pathway_kegg_operation.PathwayKeggLoading
processKeggTree(JTree, HashMap<KeggPathwayEntry, DefaultMutableTreeNode>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggService
processLabelEdit(GraphElement) - Static method in class org.graffiti.plugins.modes.defaults.AdvancedLabelTool
processLabelEdit(GraphElementComponentInterface) - Static method in class org.graffiti.plugins.modes.defaults.AdvancedLabelTool
processMouseWheelScrolling(MouseWheelEvent) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.IPK_MegaMoveTool
processNewGraph(Graph) - Method in interface org.graffiti.plugin.io.GraphPostProcessor: Call back for processing newly created graphs and newly loaded graphs.
processNodeAttElement(Attributes) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLContentHandler: Dynamically invoked by delegator handler.
processNodeDesign(Node, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Graphics
processReceivedData(TableData, String, ExperimentInterface, JComponent) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataPresenter
processReceivedData(TableData, String, ExperimentInterface, JComponent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TabDBE
processUndoableAlgorithm(Algorithm) - Static method in class org.graffiti.editor.GravistoService: Process undoable edits for AbstractAlgorithm instances.
processUpstreamNodes(Node, HashSet<Node>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateGOchildrenClustersHistogramAlgorithm
processUrlAttributes(Attributable) - Static method in class org.graffiti.plugins.ios.importers.PortableUrlService
processWorkload(ArrayList<String>) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.AnnotationProvider
processXMLentityValue(String, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathEntity
processXMLentityValue(String, String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathEntityType
processXMLentityValue(String, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathGene
processXMLentityValue(String, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathPathway
PRODUCES - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReaction
PRODUCT_ANNOTATION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
PRODUCT_META_ID - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
PRODUCT_NON_RDF_ANNOTATION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
PRODUCT_NOTES - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
production_table() - Method in class org.graffiti.plugins.ios.importers.gml.parser: Access to production table.
PROGRAM_LOADING_FINISHED - org.ApplicationStatus
progressAn - Variable in class qmwi.kseg.som.DataSet
ProgressManager - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe
ProgressManager() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe.ProgressManager
ProgressStatusService - Class in de.ipk_gatersleben.ag_nw.graffiti.services.task
ProgressStatusService() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.services.task.ProgressStatusService
ProgressViewer - Interface in org.graffiti.util: A class that displays in some sense progress made while a long running task.
progressZu - Variable in class qmwi.kseg.som.DataSet
ProjectEntity - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe
ProjectEntity(String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ProjectEntity
ProjectEntity(String, ExperimentInterface) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ProjectEntity
ProjectEntity(String, ExperimentInterface, JComponent) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ProjectEntity
ProjectEntity(String, String, Document, JComponent) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ProjectEntity: Deprecated.
ProjectEntity(String, Document) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ProjectEntity: Deprecated.
ProjectEntity(String, Document, JComponent) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ProjectEntity: Deprecated.
promptClosing(Session) - Method in class org.graffiti.editor.MainFrame: This delegates the session closing down below the method chain, given the user has not chosen 'Cancel'.
PROPERTIES_ACTION_COMMAND - Static variable in interface org.jfree.chart.ChartPanelConstants: Properties action command.
propertyChange(PropertyChangeEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.VTextIcon: Checks for changes to the font on the fComponent so that it can invalidate the layout if the size changes
propertyChange(PropertyChangeEvent) - Method in class org.jfree.chart.plot.ContourPlot: Notifies all registered listeners of a property change.
propertyChange(PropertyChangeEvent) - Method in class org.vanted.plugins.layout.stressminimization.BackgroundExecutionAlgorithm
PROSITEID - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathMolecule
ProvidesAccessToOtherAlgorithms - Interface in org.graffiti.plugin.algorithm
ProvidesAdditonalDrawingShapes - Interface in org.graffiti.plugin.view
ProvidesDirectMouseClickContextMenu - Interface in org.graffiti.plugin.algorithm
ProvidesEdgeContextMenu - Interface in org.graffiti.plugin.algorithm: DOCUMENT ME!
ProvidesExplanation - Interface in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes
ProvidesGeneralContextMenu - Interface in org.graffiti.plugin.algorithm: DOCUMENT ME!
ProvidesNodeContextMenu - Interface in org.graffiti.plugin.algorithm: DOCUMENT ME!
ProvidesRSSfeed - Interface in de.ipk_gatersleben.ag_nw.graffiti.plugins.addons: Deprecated.
ProvidesScenarioSupportCommand - Interface in scenario
ProvidesScenarioSupportCommands - Interface in scenario
ProvidesStringInitMethod - Interface in org
prune() - Method in class org.jfree.data.DefaultTableXYDataset: Removes all x-values for which all the y-values are null.
pruneFromTheseNodes(HashSet<Node>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.PruneTreeAlgorithm
pruneTree1s - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.FisherOperationMode
pruneTree2s - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.FisherOperationMode
PruneTreeAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram
PruneTreeAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.PruneTreeAlgorithm
PUBLIC_DTD_IDENTIFIER - Static variable in class org.graffiti.managers.pluginmgr.PluginXMLParser: The public identifier of the plugin dtd.
PUBLIC_ID - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLConstants: Public ID of XGMML
PUBLICATION - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter.QueryType
PUBMED - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter.QueryType
PUBMEDID - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReference
pushSubHandler(DefaultHandler) - Method in class org.jfree.data.xml.RootHandler: Pushes a sub-handler onto the stack.
put(Object, Object) - Method in class org.graffiti.event.TransactionHashMap
put(String, String) - Method in class org.graffiti.options.GravistoPreferences
putAllValues(Map<String, T>, T) - Method in enum org.vanted.scaling.scalers.component.HTMLScaleSupport.Tags
putAttributeType(String, Class<? extends Attribute>) - Static method in class org.graffiti.attributes.StringAttribute
putInScrollPane() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
putInScrollPane() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.ButtonOverlayView
putInScrollPane() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
putInScrollPane() - Method in interface org.graffiti.plugin.view.View
putInScrollPane() - Method in class org.graffiti.plugins.views.defaults.GraffitiView
putInScrollPane() - Method in class org.graffiti.plugins.views.matrix.MatrixView
putInt(String, int) - Method in class org.graffiti.options.GravistoPreferences
PutIntoSidePanel - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe
PutIntoSidePanel() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.PutIntoSidePanel
putLifesaverValue(boolean) - Static method in class org.vanted.scaling.DPIHelper

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