Index
All Classes|All Packages
T
- TAB_LAYOUT - org.FeatureSet
- TAB_LEADING - Static variable in class org.graffiti.plugin.inspector.InspectorTab
- TAB_PATTERNSEARCH - org.FeatureSet
- TAB_RANDOM - Static variable in class org.graffiti.plugin.inspector.InspectorTab
- TAB_TRAILING - Static variable in class org.graffiti.plugin.inspector.InspectorTab
- TabAglet - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network
-
Represents the tab, which contains the functionality to edit the attributes of the current graph object.
- TabAglet() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network.TabAglet
-
Constructs a
PatternTab
and sets the title. - TabBiomodels - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels
- TabBiomodels() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.TabBiomodels
- TabDBE - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe
- TabDBE() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TabDBE
-
Constructs a
PatternTab
and sets the title. - TabExampleFiles - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow
- TabExampleFiles() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.TabExampleFiles
- TabKegg - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg
- TabKegg() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.TabKegg
- tableChanged(TableModelEvent) - Method in class org.graffiti.managers.pluginmgr.PluginManagerDialog
-
Called if the contents of the pluginsTable changed.
- TableData - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe
- TableData() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData
- TableData(TableData, boolean, int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData
- TableDataTest - Class in qmwi.kseg.som.diagram
-
Insert the type's description here.
- TableDataTest() - Constructor for class qmwi.kseg.som.diagram.TableDataTest
-
LeftWindowTableData constructor comment.
- TableDataTest(DataSet) - Constructor for class qmwi.kseg.som.diagram.TableDataTest
-
Insert the method's description here.
- TableLayout - Class in info.clearthought.layout
-
TableLayout is a layout manager that arranges components in rows and columns like a spreadsheet.
- TableLayout() - Constructor for class info.clearthought.layout.TableLayout
-
Constructs an instance of TableLayout.
- TableLayout(double[][]) - Constructor for class info.clearthought.layout.TableLayout
-
Constructs an instance of TableLayout.
- TableLayoutConstants - Interface in info.clearthought.layout
-
Constants used by TableLayout.
- TableLayoutConstraints - Class in info.clearthought.layout
-
The following inner class is used to bind components to their constraints.
- TableLayoutConstraints() - Constructor for class info.clearthought.layout.TableLayoutConstraints
-
Constructs an TableLayoutConstraints with the default settings.
- TableLayoutConstraints(int, int, int, int, int, int) - Constructor for class info.clearthought.layout.TableLayoutConstraints
-
Constructs an TableLayoutConstraints a set of constraints.
- TableLayoutConstraints(String) - Constructor for class info.clearthought.layout.TableLayoutConstraints
-
Constructs an TableLayoutConstraints from a string.
- TableXYDataset - Interface in org.jfree.data
-
A dataset containing one or more data series containing (x, y) data items, where all series in the dataset share the same set of x-values.
- TabMetaCrop - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop
- TabMetaCrop() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.TabMetaCrop
- TabMetaCrop(String, String, String, String, String, boolean, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.TabMetaCrop
- TabNetworkAlgorithms - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network
- TabNetworkAlgorithms() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network.TabNetworkAlgorithms
- TabPatternLayout - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control
-
Represents the tab, which contains the functionality to edit the attributes of the current graph object.
- TabPatternLayout() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPatternLayout
-
* Constructs a
PatternTab
and sets the title. - TabPluginControl - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control
-
Represents the tab, which contains the functionality to edit the attributes of the current graph object.
- TabPluginControl() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPluginControl
-
Constructs a
PatternTab
and sets the title. - TabStatistics - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics
- TabStatistics() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics
-
Constructs a
PatternTab
and sets the title. - TabVisualisationControl - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control
-
Deprecated.Do not use, will be removed in future.
- TabVisualisationControl() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabVisualisationControl
-
Deprecated.Constructs a
PatternTab
and sets the title. - TagDownShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
- TagDownShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TagDownShape
- TagLeftShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
- TagLeftShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TagLeftShape
- TagRightShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
- TagRightShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TagRightShape
- TagUpShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
- TagUpShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TagUpShape
- TAPER - Static variable in class org.jfree.chart.renderer.AreaRendererEndType
-
The area tapers from the first or last value down to zero.
- TARGET - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
- TARGET - Static variable in class org.graffiti.plugins.ios.importers.gml.sym
- TARGET_ATTRIBUTE_LITERAL - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLConstants
- targetCountEdges - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.MapResult
- targetCountNodes - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.MapResult
- TargetDockingAttribute - Class in org.graffiti.graphics
- TargetDockingAttribute() - Constructor for class org.graffiti.graphics.TargetDockingAttribute
- TargetDockingAttribute(String, String) - Constructor for class org.graffiti.graphics.TargetDockingAttribute
- targetMenu - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.BSHinfo
- targetY - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.TargetYandNewNodeResult
- TargetYandNewNodeResult - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references
- TargetYandNewNodeResult(double, Node) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.TargetYandNewNodeResult
- Task - Class in org.jfree.data.gantt
-
A simple representation of a task.
- Task(String, Date, Date) - Constructor for class org.jfree.data.gantt.Task
-
Creates a new task.
- Task(String, TimePeriod) - Constructor for class org.jfree.data.gantt.Task
-
Creates a new task.
- TaskSeries - Class in org.jfree.data.gantt
-
A series that contains zero, one or many
Task
objects. - TaskSeries(String) - Constructor for class org.jfree.data.gantt.TaskSeries
-
Constructs a new series with the specified name.
- TaskSeriesCollection - Class in org.jfree.data.gantt
-
A collection of
TaskSeries
objects. - TaskSeriesCollection() - Constructor for class org.jfree.data.gantt.TaskSeriesCollection
-
Default constructor.
- TAXONOMY - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter.QueryType
- TeeStream - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml
- TeeStream(PrintStream, PrintStream) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.TeeStream
- teinseitig(int, double) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.StatisticTable
- temp_alpha - Variable in class org.graffiti.plugin.algorithm.ThreadSafeOptions
-
Run parameter.
- temperature_max_move - Variable in class org.graffiti.plugin.algorithm.ThreadSafeOptions
-
Run parameter.
- Template - Class in de.ipk_gatersleben.ag_pbi.datahandling
- Template() - Constructor for class de.ipk_gatersleben.ag_pbi.datahandling.Template
- TemplateFile - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe
- TemplateFile(String, URL, RunnableForFile) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TemplateFile
- TemplateFileManager - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe
- TemplateLoader - Class in de.ipk_gatersleben.ag_pbi.datahandling
- TemplateLoader() - Constructor for class de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoader
- TemplateLoaderInstance - Class in de.ipk_gatersleben.ag_pbi.datahandling
- TemplateLoaderInstance(File, TemplateLoader) - Constructor for class de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoaderInstance
- TemplateLoaderInterface - Interface in de.ipk_gatersleben.ag_pbi.datahandling
- TemplateManager - Class in de.ipk_gatersleben.ag_pbi.datahandling
- Test - Class in qmwi.kseg.som.diagram
-
Insert the type's description here.
- Test() - Constructor for class qmwi.kseg.som.diagram.Test
-
Test constructor comment.
- testGML2Pathway2GML() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway
- TestImageExport - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter
- TestImageExport() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.TestImageExport
- testShowPathwayComparison(Pathway, Pathway, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway
-
Compare two pathways
- testShowPathwayInfo(Pathway) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway
- Testttt - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance
- Testttt() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.Testttt
- TestValueRequired - Annotation Type in unit_test_support
-
Use this annotation to ensure that value used by the random property setter is different from NULL.
- TextAnnotation - Class in org.jfree.chart.annotations
-
A base class for text annotations.
- TextAreaEditComponent - Class in org.graffiti.plugins.editcomponents.defaults
-
DOCUMENT ME!
- TextAreaEditComponent(StringAttribute) - Constructor for class org.graffiti.plugins.editcomponents.defaults.TextAreaEditComponent
-
Constructor for TextAreaEditComponent.
- TextAreaEditComponent(Displayable) - Constructor for class org.graffiti.plugins.editcomponents.defaults.TextAreaEditComponent
-
Constructor for TextAreaEditComponent.
- TEXTCOLOR - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
- TextFile - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart
- TextFile() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.TextFile
- TextFile(InputStream, int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.TextFile
- TextFile(Reader) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.TextFile
- TextFile(String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.TextFile
- TextFile(URL) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.TextFile
- TextFile(URL, boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.TextFile
- TextFileColumnInformation - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression
- TextFileColumnInformation(String, int, Integer) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.TextFileColumnInformation
- TextListReader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list
-
edges in list form S T W (header) a b 0.3 c b 0.7 % comment a c 1.0 or simple text format (see http://www.graphdrawing.de/contest2009/gdcategories2009.html): # Nodes Id1,40,40,20,20 Id2,40,40,100,100 Id3,40,40 # Edges Id1,Id2,40,20,100,20,100,80 Id3,Id2
- TextListReader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list.TextListReader
- TextListReaderPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list
- TextListReaderPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list.TextListReaderPlugin
- TextTitle - Class in org.jfree.chart.title
-
A chart title that displays a text string.
- TextTitle() - Constructor for class org.jfree.chart.title.TextTitle
-
Creates a new title, using default attributes where necessary.
- TextTitle(String) - Constructor for class org.jfree.chart.title.TextTitle
-
Creates a new title, using default attributes where necessary.
- TextTitle(String, Font) - Constructor for class org.jfree.chart.title.TextTitle
-
Creates a new title, using default attributes where necessary.
- TextTitle(String, Font, Paint) - Constructor for class org.jfree.chart.title.TextTitle
-
Creates a new title, using default attributes where necessary.
- TextTitle(String, Font, Paint, RectangleEdge, HorizontalAlignment, VerticalAlignment, Spacer) - Constructor for class org.jfree.chart.title.TextTitle
-
Creates a new title.
- TextTitle(String, Font, HorizontalAlignment) - Constructor for class org.jfree.chart.title.TextTitle
-
Creates a new title, using default attributes where necessary.
- then(StatefulAccumulator<?, O>) - Method in class org.vanted.indexednodes.accumulators.StatefulAccumulator
-
Compose with another accumulator
- ThermometerDemo - Class in org.jfree.chart.demo
-
A demonstration application for the thermometer plot.
- ThermometerDemo() - Constructor for class org.jfree.chart.demo.ThermometerDemo
-
Default constructor.
- ThermometerDemo2 - Class in org.jfree.chart.demo
-
A simple demonstration application showing how to create a thermometer.
- ThermometerDemo2(String) - Constructor for class org.jfree.chart.demo.ThermometerDemo2
-
Creates a new demo.
- ThermometerPlot - Class in org.jfree.chart.plot
-
A plot that displays a single value (from a
ValueDataset
) in a thermometer type display. - ThermometerPlot() - Constructor for class org.jfree.chart.plot.ThermometerPlot
-
Creates a new thermometer plot.
- ThermometerPlot(ValueDataset) - Constructor for class org.jfree.chart.plot.ThermometerPlot
-
Creates a new thermometer plot, using default attributes where necessary.
- THICKNESS - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
-
Thickness of the Arrow Head (may be "1" for "auto-size")
- ThicknessAttribute - Class in org.graffiti.graphics
- ThicknessAttribute(String) - Constructor for class org.graffiti.graphics.ThicknessAttribute
- ThicknessAttribute(String, double) - Constructor for class org.graffiti.graphics.ThicknessAttribute
- ThicknessAttribute(String, Double) - Constructor for class org.graffiti.graphics.ThicknessAttribute
- ThicknessAttributeEditor - Class in org.graffiti.plugins.views.defaults
- ThicknessAttributeEditor(Displayable) - Constructor for class org.graffiti.plugins.views.defaults.ThicknessAttributeEditor
- ThicknessAttributeEditor.ArrowHeadModes - Enum in org.graffiti.plugins.views.defaults
- thinCircleArrow - Static variable in class org.graffiti.plugins.editcomponents.defaults.EdgeArrowShapeEditComponent
- thinDiamondArrow - Static variable in class org.graffiti.plugins.editcomponents.defaults.EdgeArrowShapeEditComponent
- thinStandardArrow - Static variable in class org.graffiti.plugins.editcomponents.defaults.EdgeArrowShapeEditComponent
- threadedRedraw - Variable in class org.graffiti.plugins.views.defaults.GraffitiView
- ThreadSafeAlgorithm - Class in org.graffiti.plugin.algorithm
-
DOCUMENT ME!
- ThreadSafeAlgorithm() - Constructor for class org.graffiti.plugin.algorithm.ThreadSafeAlgorithm
- ThreadSafeOptions - Class in org.graffiti.plugin.algorithm
-
This class can be used for thread safe communication between user interfaces and plugins.
- ThreadSafeOptions() - Constructor for class org.graffiti.plugin.algorithm.ThreadSafeOptions
- threadSettingsChanged - Variable in class org.graffiti.plugin.algorithm.ThreadSafeOptions
-
A second variable for changed settigns.
- THREE - org.vanted.animation.NumberOfLoops
- throwFileNew() - Method in class org.graffiti.editor.actions.FileHandlingManager
- throwFileOpened(File) - Method in class org.graffiti.editor.actions.FileHandlingManager
- throwFileSaved(File, String, Graph) - Method in class org.graffiti.editor.actions.FileHandlingManager
- throwFileSavedAs(File, File) - Method in class org.graffiti.editor.actions.FileHandlingManager
- Tick - Class in org.jfree.chart.axis
-
Represents the dimensions of a tick on an axis (used during the process of drawing a chart, but not retained).
- Tick(String, TextAnchor, TextAnchor, double) - Constructor for class org.jfree.chart.axis.Tick
-
Creates a new tick.
- TickLabelEntity - Class in org.jfree.chart.entity
-
A chart entity representing a tick label.
- TickLabelEntity(Shape, String, String) - Constructor for class org.jfree.chart.entity.TickLabelEntity
-
Creates a new entity.
- TickUnit - Class in org.jfree.chart.axis
-
Base class representing a tick unit.
- TickUnit(double) - Constructor for class org.jfree.chart.axis.TickUnit
-
Constructs a new tick unit.
- TickUnits - Class in org.jfree.chart.axis
-
A collection of tick units.
- TickUnits() - Constructor for class org.jfree.chart.axis.TickUnits
-
Constructs a new collection of tick units.
- TickUnitSource - Interface in org.jfree.chart.axis
- Tie - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics
- Tie(double, int, double) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.Tie
- TILED - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
- TIME_UNITS - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
- TimeAndPlantName - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe
- TimeAndPlantName(String, int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TimeAndPlantName
- TimeAndTimeUnit - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes
- TimeAndTimeUnit(String, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.TimeAndTimeUnit
- timeDefaultBeatTime - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network.BroadCastTask
- Timeline - Interface in org.jfree.chart.axis
-
An interface that defines the contract for a Timeline.
- TimePeriod - Interface in org.jfree.data.time
-
A period of time measured to millisecond precision using
java.util.Date
. - TimePeriodAnchor - Class in org.jfree.data.time
-
Used to indicate one of three positions in a time period:
START
,MIDDLE
andEND
. - TimePeriodFormatException - Exception in org.jfree.data.time
-
An exception that indicates an invalid format in a string representing a time period.
- TimePeriodFormatException(String) - Constructor for exception org.jfree.data.time.TimePeriodFormatException
-
Creates a new exception.
- TimePeriodValue - Class in org.jfree.data.time
-
Represents a time period and an associated value.
- TimePeriodValue(TimePeriod, double) - Constructor for class org.jfree.data.time.TimePeriodValue
-
Constructs a new data pair.
- TimePeriodValue(TimePeriod, Number) - Constructor for class org.jfree.data.time.TimePeriodValue
-
Constructs a new data item.
- TimePeriodValues - Class in org.jfree.data.time
-
A structure containing zero, one or many
TimePeriodValue
instances. - TimePeriodValues(String) - Constructor for class org.jfree.data.time.TimePeriodValues
-
Creates a new (empty) collection of time period values.
- TimePeriodValues(String, String, String) - Constructor for class org.jfree.data.time.TimePeriodValues
-
Creates a new time series that contains no data.
- TimePeriodValuesCollection - Class in org.jfree.data.time
-
A collection of
TimePeriodValues
objects. - TimePeriodValuesCollection() - Constructor for class org.jfree.data.time.TimePeriodValuesCollection
-
Constructs an empty dataset, tied to the default timezone.
- TimePeriodValuesCollection(TimeZone) - Constructor for class org.jfree.data.time.TimePeriodValuesCollection
-
Deprecated.The TimeZone is ignored, use an alternative constructor.
- TimePeriodValuesCollection(TimePeriodValues) - Constructor for class org.jfree.data.time.TimePeriodValuesCollection
-
Constructs a dataset containing a single series.
- TimePeriodValuesCollection(TimePeriodValues, TimeZone) - Constructor for class org.jfree.data.time.TimePeriodValuesCollection
-
Deprecated.TimeZone parameter is not used.
- TimePeriodValuesDemo - Class in org.jfree.chart.demo
-
An example of....
- TimePeriodValuesDemo(String) - Constructor for class org.jfree.chart.demo.TimePeriodValuesDemo
-
A demonstration application showing how to....
- TimePeriodValuesDemo2 - Class in org.jfree.chart.demo
-
An example of....
- TimePeriodValuesDemo2(String) - Constructor for class org.jfree.chart.demo.TimePeriodValuesDemo2
-
A demonstration application showing how to....
- TimePeriodValuesDemo3 - Class in org.jfree.chart.demo
-
This demo shows a bar chart with time based data where the time periods are slightly irregular.
- TimePeriodValuesDemo3(String) - Constructor for class org.jfree.chart.demo.TimePeriodValuesDemo3
-
Creates a new demo instance.
- TimePoint<T> - Class in org.vanted.animation.data
- TimePoint(double, T) - Constructor for class org.vanted.animation.data.TimePoint
- timeS - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow
- TimeSeries - Class in org.jfree.data.time
-
Represents a sequence of zero or more data items in the form (period, value).
- TimeSeries(String) - Constructor for class org.jfree.data.time.TimeSeries
-
Creates a new (empty) time series.
- TimeSeries(String, Class) - Constructor for class org.jfree.data.time.TimeSeries
-
Creates a new (empty) time series.
- TimeSeries(String, String, String, Class) - Constructor for class org.jfree.data.time.TimeSeries
-
Creates a new time series that contains no data.
- TimeSeriesCollection - Class in org.jfree.data.time
-
A collection of time series objects.
- TimeSeriesCollection() - Constructor for class org.jfree.data.time.TimeSeriesCollection
-
Constructs an empty dataset, tied to the default timezone.
- TimeSeriesCollection(TimeZone) - Constructor for class org.jfree.data.time.TimeSeriesCollection
-
Constructs an empty dataset, tied to a specific timezone.
- TimeSeriesCollection(TimeSeries) - Constructor for class org.jfree.data.time.TimeSeriesCollection
-
Constructs a dataset containing a single series (more can be added), tied to the default timezone.
- TimeSeriesCollection(TimeSeries, TimeZone) - Constructor for class org.jfree.data.time.TimeSeriesCollection
-
Constructs a dataset containing a single series (more can be added), tied to a specific timezone.
- TimeSeriesDataItem - Class in org.jfree.data.time
-
Represents one data item in a time series.
- TimeSeriesDataItem(RegularTimePeriod, double) - Constructor for class org.jfree.data.time.TimeSeriesDataItem
-
Constructs a new data item that associates a value with a time period.
- TimeSeriesDataItem(RegularTimePeriod, Number) - Constructor for class org.jfree.data.time.TimeSeriesDataItem
-
Constructs a new data item that associates a value with a time period.
- TimeSeriesDemo - Class in org.jfree.chart.demo
-
An example of a time series chart.
- TimeSeriesDemo(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo
-
A demonstration application showing how to create a simple time series chart.
- TimeSeriesDemo10 - Class in org.jfree.chart.demo
-
A demo showing a time series with per minute data.
- TimeSeriesDemo10(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo10
-
A demonstration application.
- TimeSeriesDemo11 - Class in org.jfree.chart.demo
-
An example of....
- TimeSeriesDemo11(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo11
-
A demonstration application showing how to...
- TimeSeriesDemo12 - Class in org.jfree.chart.demo
-
A demo.
- TimeSeriesDemo12(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo12
-
A demo.
- TimeSeriesDemo13 - Class in org.jfree.chart.demo
-
This demo shows two charts that use weekly data.
- TimeSeriesDemo13(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo13
-
Creates a new demo instance.
- TimeSeriesDemo2 - Class in org.jfree.chart.demo
-
A demo showing a time series (quarterly data) with a
null
value. - TimeSeriesDemo2(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo2
-
A demonstration application showing a quarterly time series containing a null value.
- TimeSeriesDemo3 - Class in org.jfree.chart.demo
-
A time series demo, with monthly data, where the tick unit on the axis is set to one month also (this switches off the auto tick unit selection, and *can* result in overlapping labels).
- TimeSeriesDemo3(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo3
-
A demonstration application showing a quarterly time series containing a null value.
- TimeSeriesDemo4 - Class in org.jfree.chart.demo
-
An example of a time series chart using hourly data and including a null value.
- TimeSeriesDemo4(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo4
-
A demonstration application showing a quarterly time series containing a null value.
- TimeSeriesDemo5 - Class in org.jfree.chart.demo
-
A time series chart with 4000 data points, to get an idea of how JFreeChart performs with a larger dataset.
- TimeSeriesDemo5(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo5
-
Creates a new demo instance.
- TimeSeriesDemo6 - Class in org.jfree.chart.demo
-
A time series chart with all zero data.
- TimeSeriesDemo6(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo6
-
Creates a new instance.
- TimeSeriesDemo7 - Class in org.jfree.chart.demo
-
A time series chart.
- TimeSeriesDemo7(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo7
-
A demonstration application showing how to create a simple time series chart.
- TimeSeriesDemo8 - Class in org.jfree.chart.demo
-
A time series chart.
- TimeSeriesDemo8(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo8
-
A demonstration application showing how to create a simple time series chart.
- TimeSeriesDemo9 - Class in org.jfree.chart.demo
-
An example of a time series chart.
- TimeSeriesDemo9(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo9
-
A demonstration application showing how to create a simple time series chart.
- TimeSeriesTableModel - Class in org.jfree.data
-
Wrapper around a time series to convert it to a table model for use in a JTable.
- TimeSeriesTableModel() - Constructor for class org.jfree.data.TimeSeriesTableModel
-
Default constructor.
- TimeSeriesTableModel(TimeSeries) - Constructor for class org.jfree.data.TimeSeriesTableModel
-
Constructs a table model for a time series.
- TimeSeriesTableModel(TimeSeries, boolean) - Constructor for class org.jfree.data.TimeSeriesTableModel
-
Creates a table model based on a time series.
- TimeSeriesURLGenerator - Class in org.jfree.chart.urls
-
A URL generator.
- TimeSeriesURLGenerator() - Constructor for class org.jfree.chart.urls.TimeSeriesURLGenerator
-
Blank constructor
- TimeSeriesURLGenerator(DateFormat, String, String, String) - Constructor for class org.jfree.chart.urls.TimeSeriesURLGenerator
-
Construct TimeSeriesURLGenerator overriding defaults
- TimeTableXYDataset - Class in org.jfree.data.time
-
A dataset for regular time periods that implements the TableXYDataset interface.
- TimeTableXYDataset() - Constructor for class org.jfree.data.time.TimeTableXYDataset
-
Creates a new TimeTableDataset.
- TimeTableXYDataset(TimeZone) - Constructor for class org.jfree.data.time.TimeTableXYDataset
-
Creates a new TimeTableDataset with the given time zone.
- TimeTableXYDataset(TimeZone, Locale) - Constructor for class org.jfree.data.time.TimeTableXYDataset
-
Creates a new TimeTableDataset with the given time zone and locale.
- timeUnit - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow
- timeUnit - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint
- timeUnitAndTime - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint
- timeValue - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint
- timeValue - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.MyComparableNode
- timeValueForComparision - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint
- tinvers(double, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.StatisticTable
- Title - Class in org.jfree.chart.title
-
The base class for all chart titles.
- TITLE - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReference
- titleChanged(TitleChangeEvent) - Method in interface org.jfree.chart.event.TitleChangeListener
-
Receives notification of a chart title change event.
- titleChanged(TitleChangeEvent) - Method in class org.jfree.chart.JFreeChart
-
Receives notification that a chart title has changed, and passes this on to registered listeners.
- TitleChangeEvent - Class in org.jfree.chart.event
-
A change event that encapsulates information about a change to a chart title.
- TitleChangeEvent(Title) - Constructor for class org.jfree.chart.event.TitleChangeEvent
-
Default constructor.
- TitleChangeListener - Interface in org.jfree.chart.event
-
The interface that must be supported by classes that wish to receive notification of changes to a chart title.
- TitlePropertyEditPanel - Class in org.jfree.chart.ui
-
A panel for editing the properties of a chart title.
- TitlePropertyEditPanel(Title) - Constructor for class org.jfree.chart.ui.TitlePropertyEditPanel
-
Standard constructor: builds a panel for displaying/editing the properties of the specified title.
- toArray() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
- toArray() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
- toArray() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment
- toArray() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface
- toArray() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample
- toArray() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface
- toArray() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
- toArray() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
- toArray(T[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
- toArray(T[]) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
- toArray(T[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment
- toArray(T[]) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface
- toArray(T[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample
- toArray(T[]) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface
- toArray(T[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
- toArray(T[]) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
- toBeAdded() - Method in class org.graffiti.selection.SelectionEvent
-
Returns the added.
- toDataValue(double[]) - Method in class org.vanted.animation.data.ColorTimePoint
- toDataValue(double[]) - Method in class org.vanted.animation.data.DoubleTimePoint
- toDataValue(double[]) - Method in class org.vanted.animation.data.InterpolatableTimePoint
-
Reverses
InterpolatableTimePoint.getDoubleValues()
method. - toDataValue(double[]) - Method in class org.vanted.animation.data.Point2DTimePoint
- toDataValue(double[]) - Method in class org.vanted.animation.data.VectorTimePoint
- toggleAutoRange() - Method in class org.jfree.chart.ui.ColorBarPropertyEditPanel
-
Toggle the auto range setting.
- toGMLstring() - Method in enum org.AlignmentSetting
- toGMLstring() - Method in enum org.LabelFrameSetting
- toMillisecond(long) - Method in class org.jfree.chart.axis.SegmentedTimeline
-
Translates a value relative to the timeline into a millisecond.
- toMillisecond(long) - Method in interface org.jfree.chart.axis.Timeline
-
Translates a value relative to this timeline into a domain value.
- Tool - Interface in org.graffiti.plugin.tool
-
A
Tool
executes a specified action on aConstrainedGraph
. - ToolBarLayout - Class in org.graffiti.util
-
An extension of
FlowLayout
that correctly calculates the height of a toolbar panel. - ToolBarLayout() - Constructor for class org.graffiti.util.ToolBarLayout
- ToolBarLayout(int) - Constructor for class org.graffiti.util.ToolBarLayout
- ToolBarLayout(int, int, int) - Constructor for class org.graffiti.util.ToolBarLayout
- ToolBarOptionPane - Class in org.graffiti.editor.options
-
A tool bar editor.
- ToolBarOptionPane(Preferences) - Constructor for class org.graffiti.editor.options.ToolBarOptionPane
-
Constructor for ToolBarOptionPane.
- Toolbox - Class in org.vanted.scaling
-
An utility class holding some handy methods for tweaking the scaling of some components, where necessary.
- Toolbox() - Constructor for class org.vanted.scaling.Toolbox
- ToolButton - Class in org.graffiti.plugin.gui
-
DOCUMENT ME!
- ToolButton(Tool) - Constructor for class org.graffiti.plugin.gui.ToolButton
-
Constructor that sets the buttons tool to the given
Tool
. - ToolButton(Tool, String) - Constructor for class org.graffiti.plugin.gui.ToolButton
-
Creates a new ToolButton object.
- ToolButton(Tool, String, String) - Constructor for class org.graffiti.plugin.gui.ToolButton
-
Creates a new ToolButton object.
- ToolButton(Tool, String, ImageIcon) - Constructor for class org.graffiti.plugin.gui.ToolButton
-
Creates a new ToolButton object.
- ToolManager - Interface in org.graffiti.managers
-
An interface for managing a list of tools.
- tools - Variable in class org.graffiti.plugin.EditorPluginAdapter
-
The tools the plugin provides.
- Tools - Class in qmwi.kseg.som
- Tools() - Constructor for class qmwi.kseg.som.Tools
- ToolTipHelper - Class in org.graffiti.plugin
- ToolTipHelper() - Constructor for class org.graffiti.plugin.ToolTipHelper
- TOOLTIPS - org.FeatureSet
- ToolTipTagFragmentGenerator - Interface in org.jfree.chart.imagemap
-
Interface for generating the tooltip fragment of an HTML image map area tag.
- TOP - org.graffiti.plugins.attributecomponents.simplelabel.Quadrant
- TOP - org.graffiti.plugins.views.defaults.Line
- TOP - Static variable in class info.clearthought.layout.SingleFiledLayout
-
Top justify components
- TOP - Static variable in interface info.clearthought.layout.TableLayoutConstants
-
Indicates that the component is top justified in its cell
- TOP - Static variable in class org.jfree.chart.renderer.LineAndShapeRenderer
-
Constant indicating that labels are to be shown above data points
- TOP - Static variable in class org.jfree.chart.title.Title
-
Useful constant for the title position (also used for vertical alignment).
- TOP_LEFT - org.graffiti.plugins.views.defaults.Corner
- TOP_OR_LEFT - Static variable in class org.jfree.chart.axis.AxisLocation
-
Axis at the top or left.
- TOP_OR_RIGHT - Static variable in class org.jfree.chart.axis.AxisLocation
-
Axis at the top or right.
- TOP_RIGHT - org.graffiti.plugins.views.defaults.Corner
- topN - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOperation
- toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.NodeSortCommand
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.exact_fisher_test.ContTable
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionEntry
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KoEntry
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzClassEntry
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.QuadNumber
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathPathway
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReaction
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.LineModeSetting
- toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.GraffitiCharts
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_editing.DBGETresult
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetTable
- toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.LegendType
- toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.FisherOperationMode
- toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition.ConditionInfo
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
- toString() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingId
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader
- toString() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
- toString() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
- toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.TtestInfo
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint
- toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter.QueryType
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.SimpleModel
-
Returns a string representation of the object.
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DataRowExcelExport
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ProjectEntity
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TimeAndPlantName
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.SpecialTableValue
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.TimeAndTimeUnit
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggPathwayEntry
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.OrganismEntry
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkItem
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkTreeNode
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyXML_XYDataset
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.LookAndFeelWrapper
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.PrettyObject
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings.MyPluginTreeNode
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate.RotateAlgorithm
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kgml.Vector2d
- toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.EntryType
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.Id
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.IdRef
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.kgmlColor
- toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.kgmlGraphicsType
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.kgmlNumber
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.MapNumber
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.MapOrg
- toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.ReactionType
- toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.RelationType
- toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.SubtypeName
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.SubtypeValue
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.Url
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Entry
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayErrorInformation
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayWarningInformation
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.IndexAndString
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.NodeCombination
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Reaction
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Subtype
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.copy_pattern_layout.CopyPatternLayoutAlgorithm
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache.PatternSpringembedder
-
DOCUMENT ME!
- toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BundleParallelEdges.Shapes
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder3d
- toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.AttributeCalculation
- toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.ModeOfAttributeOperation
- toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.HideOrShowChildNodes.HideOrShowOperation
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.AttributePathNameSearchType
- toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchType
- toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayLinkVisualizationComponent
- toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.SetLabelModeOfOperation
- toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SizeSettingZoom
- toString() - Method in class de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoader
- toString() - Method in class de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoaderInstance
- toString() - Method in interface de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoaderInterface
- toString() - Method in class info.clearthought.layout.TableLayout
-
Converts this TableLayout to a string.
- toString() - Method in class info.clearthought.layout.TableLayoutConstraints
-
Gets a string representation of this TableLayoutConstraints.
- toString() - Method in enum org.AlignmentSetting
- toString() - Method in class org.graffiti.attributes.AbstractAttribute
-
Returns the ID of this attribute.
- toString() - Method in class org.graffiti.editor.GraffitiInternalFrame
- toString() - Method in enum org.graffiti.editor.HashType
- toString() - Method in class org.graffiti.graph.AdjListEdge
- toString() - Method in class org.graffiti.graph.AdjListGraph
- toString() - Method in class org.graffiti.graph.AdjListNode
- toString() - Method in class org.graffiti.help.HelpContext
-
Returns a human readable string of this help context.
- toString() - Method in class org.graffiti.managers.DefaultIOManager
-
Returns a string representation of the io manager.
- toString() - Method in class org.graffiti.managers.pluginmgr.PluginDependency
-
Returns a human readable string of this object.
- toString() - Method in class org.graffiti.managers.pluginmgr.PluginDescription
-
Returns a human readable string representation of this object.
- toString() - Method in enum org.graffiti.plugin.algorithm.Category
- toString() - Method in class org.graffiti.plugin.io.resources.IOurl
- toString() - Method in class org.graffiti.plugin.parameter.AbstractSingleParameter
- toString() - Method in class org.graffiti.plugins.inspectors.defaults.BooledAttribute
-
Returns the ID of the contained attribute.
- toString() - Method in enum org.graffiti.plugins.views.defaults.DockingAttributeEditor.DockingModes
- toString() - Method in enum org.graffiti.plugins.views.defaults.ThicknessAttributeEditor.ArrowHeadModes
- toString() - Method in class org.graffiti.selection.Selection
-
Gets a string describing the selection.
- toString() - Method in class org.graffiti.session.Session
- toString() - Method in class org.graffiti.util.Pair
- toString() - Method in class org.jfree.chart.axis.AxisLocation
-
Returns a string representing the object.
- toString() - Method in class org.jfree.chart.axis.AxisSpace
-
Returns a string representing the object (for debugging purposes).
- toString() - Method in class org.jfree.chart.axis.CategoryAnchor
-
Returns a string representing the object.
- toString() - Method in class org.jfree.chart.axis.CategoryLabelWidthType
-
Returns a string representing the object.
- toString() - Method in class org.jfree.chart.axis.DateTickMarkPosition
-
Returns a string representing the object.
- toString() - Method in class org.jfree.chart.axis.Tick
-
Returns a string representation of the tick.
- toString() - Method in class org.jfree.chart.entity.CategoryItemEntity
-
Returns a string representing this object (useful for debugging purposes).
- toString() - Method in class org.jfree.chart.entity.PieSectionEntity
-
Returns a string representing the entity.
- toString() - Method in class org.jfree.chart.labels.ItemLabelAnchor
-
Returns a string representing the object.
- toString() - Method in class org.jfree.chart.LegendRenderingOrder
-
Returns a string representing the object.
- toString() - Method in class org.jfree.chart.plot.DatasetRenderingOrder
-
Returns a string representing the object.
- toString() - Method in class org.jfree.chart.plot.DialShape
-
Returns a string representing the object.
- toString() - Method in class org.jfree.chart.plot.PieLabelDistributor
-
Returns a string containing a description of the object for debugging purposes.
- toString() - Method in class org.jfree.chart.plot.PieLabelRecord
-
Returns a string describing the object.
- toString() - Method in class org.jfree.chart.plot.PlotOrientation
-
Returns a string representing the object.
- toString() - Method in class org.jfree.chart.renderer.AreaRendererEndType
-
Returns a string representing the object.
- toString() - Method in class org.jfree.chart.renderer.Outlier
-
Returns a textual representation of the outlier.
- toString() - Method in class org.jfree.chart.renderer.RangeType
-
Returns a string representing the object.
- toString() - Method in class org.jfree.data.DateRange
-
Returns a string representing the date range (useful for debugging).
- toString() - Method in class org.jfree.data.KeyedValueComparatorType
-
Returns a string representing the object.
- toString() - Method in class org.jfree.data.Range
-
Returns a string representation of this Range.
- toString() - Method in class org.jfree.data.statistics.HistogramType
-
Returns a string representing the object.
- toString() - Method in class org.jfree.data.time.Day
-
Returns a string representing the day.
- toString() - Method in class org.jfree.data.time.Month
-
Returns a string representing the month (e.g.
- toString() - Method in class org.jfree.data.time.Quarter
-
Returns a string representing the quarter (e.g.
- toString() - Method in class org.jfree.data.time.RegularTimePeriod
-
Returns a string representation of the time period.
- toString() - Method in class org.jfree.data.time.TimePeriodAnchor
-
Returns a string representing the object.
- toString() - Method in class org.jfree.data.time.Week
-
Returns a string representing the week (e.g.
- toString() - Method in class org.jfree.data.time.Year
-
Returns a string representing the year..
- toString() - Method in enum org.LabelFrameSetting
- toString() - Method in class org.ObjectRef
- toString() - Method in enum org.Release
- toString() - Method in class org.vanted.animation.data.Point2DTimePoint
- toString() - Method in class org.vanted.animation.data.TimePoint
- toString() - Method in class org.vanted.animation.interpolators.CosineInterpolator
- toString() - Method in class org.vanted.animation.interpolators.CubicInterpolator
- toString() - Method in class org.vanted.animation.interpolators.LinearInterpolator
- toString() - Method in class org.vanted.animation.interpolators.SigmoidInterpolator
- toString() - Method in class org.vanted.animation.interpolators.SineInterpolator
- toString() - Method in class org.vanted.animation.interpolators.SmoothCubicInterpolator
- toString() - Method in class org.vanted.LookAndFeelNameAndClass
- toString() - Method in class org.vanted.plugins.layout.multilevelframework.LayoutAlgorithmWrapper
- toString() - Method in enum org.vanted.plugins.layout.stressminimization.StressMinParamModel.InitialLayoutOption
- toString() - Method in enum org.vanted.plugins.layout.stressminimization.StressMinParamModel.MethodOption
- toString() - Method in class org.Vector2d
- toString() - Method in class org.Vector2df
- toString() - Method in class org.Vector3d
- toString() - Method in class placement.Block
- toString() - Method in class placement.Constraint
- toString() - Method in class placement.MaxPairingHeap
- toString() - Method in class placement.ScanListPriorityQueue
- toString() - Method in class placement.SlowPriorityQueue
- toString() - Method in class placement.Variable
- toString() - Method in class qmwi.kseg.som.CSV_SOM_dataEntry
- toString() - Method in class scenario.Scenario
- toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttribute
- toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartAttribute
- toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttribute
- toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundAttribute
- toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundPositionAttribute
- toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_color.LabelColorAttribute
- toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings.LabelFontAttribute
- toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style.LabelStyleAttribute
- toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttribute
- toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggGroupPartAttribute
- toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggIdAttribute
- toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionIdAttribute
- toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionTypeAttribute
- toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSrcTgtAttribute
- toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSubTypeAttribute
- toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationTypeAttribute
- toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggTypeAttribute
- toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment.LabelAlignmentAttribute
- toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttribute
- toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttribute
- toString(int) - Method in class org.graffiti.attributes.AbstractAttribute
- toString(int) - Method in class org.graffiti.attributes.AbstractCollectionAttribute
- toString(int) - Method in interface org.graffiti.attributes.Attribute
-
Returns a string representation prepended by
n
spaces of this attribute. - toString(int) - Method in class org.graffiti.attributes.StringAttribute
- toString(StringBuilder, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader
- toString(StringBuilder, int) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface
- toStringWithDetails(boolean, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Reaction
- toStringWithErrorThrowing() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment
- toStringWithErrorThrowing() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface
- toStringWithKeggIDs() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation
- toStringWithKeggNames() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation
- toStringWithShortDesc(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation
- toTimelineValue(long) - Method in class org.jfree.chart.axis.SegmentedTimeline
-
Translates a value relative to the domain value (all Dates) into a value relative to the segmented timeline.
- toTimelineValue(long) - Method in interface org.jfree.chart.axis.Timeline
-
Translates a millisecond (as defined by java.util.Date) into an index along this timeline.
- toTimelineValue(Date) - Method in class org.jfree.chart.axis.SegmentedTimeline
-
Translates a date into a value relative to the segmented timeline.
- toTimelineValue(Date) - Method in interface org.jfree.chart.axis.Timeline
-
Translates a date into a value on this timeline.
- toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttribute
- toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartAttribute
- toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttribute
- toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundAttribute
- toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundPositionAttribute
- toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_color.LabelColorAttribute
- toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings.LabelFontAttribute
- toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style.LabelStyleAttribute
- toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttribute
- toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggGroupPartAttribute
- toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggIdAttribute
- toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionIdAttribute
- toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionTypeAttribute
- toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSrcTgtAttribute
- toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSubTypeAttribute
- toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationTypeAttribute
- toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggTypeAttribute
- toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment.LabelAlignmentAttribute
- toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttribute
- toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttribute
- toXMLString() - Method in class org.graffiti.attributes.AbstractAttribute
- toXMLString() - Method in class org.graffiti.attributes.AbstractCollectionAttribute
- toXMLString() - Method in class org.graffiti.attributes.BooleanAttribute
- toXMLString() - Method in class org.graffiti.attributes.ByteAttribute
- toXMLString() - Method in class org.graffiti.attributes.DoubleAttribute
- toXMLString() - Method in class org.graffiti.attributes.FloatAttribute
- toXMLString() - Method in class org.graffiti.attributes.IntegerAttribute
- toXMLString() - Method in class org.graffiti.attributes.LinkedHashMapAttribute
- toXMLString() - Method in class org.graffiti.attributes.LongAttribute
- toXMLString() - Method in class org.graffiti.attributes.ShortAttribute
- toXMLString() - Method in class org.graffiti.attributes.StringAttribute
- toXMLString() - Method in interface org.graffiti.plugin.Displayable
-
Returns a well-formed XML string representing the Displayable.
- toXMLString() - Method in class org.graffiti.plugin.parameter.AbstractLimitableParameter
- toXMLString() - Method in class org.graffiti.plugin.parameter.AbstractSingleParameter
- toXMLString() - Method in class org.graffiti.plugin.parameter.BooleanParameter
- toXMLString() - Method in class org.graffiti.plugin.parameter.ColorParameter
- toXMLString() - Method in class org.graffiti.plugin.parameter.StringParameter
- trainOrUseSOM(boolean, int, String[], int, BackgroundTaskStatusProviderSupportingExternalCall, int) - Method in class qmwi.kseg.som.DataSet
-
Trains the SOM or uses the SOM in order to divide the input into groups
- TransactionAdapter - Class in org.graffiti.event
-
Adapter for the TransactionListener interface, providing default empty implementation.
- TransactionAdapter() - Constructor for class org.graffiti.event.TransactionAdapter
- TransactionEvent - Class in org.graffiti.event
-
Contains a transaction event.
- TransactionEvent(Object) - Constructor for class org.graffiti.event.TransactionEvent
-
Constructs a transaction event object with the specified source component.
- TransactionEvent(Object, TransactionHashMap) - Constructor for class org.graffiti.event.TransactionEvent
-
Constructs a transaction event object with the specified source component.
- transactionFinished(Object) - Method in class org.graffiti.event.ListenerManager
-
Called when a transaction has finished.
- transactionFinished(Object, boolean) - Method in class org.graffiti.event.ListenerManager
- transactionFinished(Object, boolean, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.event.ListenerManager
- transactionFinished(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkTab
- transactionFinished(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics
- transactionFinished(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPatternLayout
- transactionFinished(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPluginControl
- transactionFinished(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabVisualisationControl
-
Deprecated.
- transactionFinished(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.WorkflowHelper
-
Deprecated.
- transactionFinished(TransactionEvent) - Method in class org.graffiti.event.AbstractAttributeListener
-
Called after a transaction has been finished.
- transactionFinished(TransactionEvent) - Method in class org.graffiti.event.AbstractEdgeListener
-
Called after a transaction has been finished.
- transactionFinished(TransactionEvent) - Method in class org.graffiti.event.AbstractGraphListener
-
Called after a transaction has been finished.
- transactionFinished(TransactionEvent) - Method in class org.graffiti.event.AbstractNodeListener
-
Called after a transaction has been finished.
- transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
- transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKGraffitiView
- transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
- transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation.NavigationComponentView
- transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.editor.StatusBar
- transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.event.AbstractAttributeListener
- transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.event.AttributeAdapter
- transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.event.EdgeAdapter
- transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.event.GraphAdapter
- transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.event.NodeAdapter
- transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.event.TransactionAdapter
- transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in interface org.graffiti.event.TransactionListener
-
Called when a transaction has stopped.
- transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugin.editcomponent.GraphComponentEditComponent
-
Called if a transaction got finished.
- transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
- transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter
-
Called if a transaction got finished.
- transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugin.inspector.SubtabHostTab
- transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugin.view.AbstractView
-
Called when a transaction has stopped.
- transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugins.inspectors.defaults.AbstractTab
- transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugins.views.defaults.GraffitiView
-
Called when a transaction has stopped.
- transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugins.views.matrix.MatrixModel
- transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugins.views.matrix.MatrixView
- transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.session.GraphConstraintChecker
-
Called when a transaction has stopped.
- TransactionHashMap - Class in org.graffiti.event
- TransactionHashMap() - Constructor for class org.graffiti.event.TransactionHashMap
- TransactionListener - Interface in org.graffiti.event
-
Interface, that contains methods which are called when transactions are started or finished.
- transactionStarted(Object) - Method in class org.graffiti.event.ListenerManager
-
Called when a transaction has started.
- transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
- transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
- transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkTab
- transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics
- transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPatternLayout
- transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPluginControl
- transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabVisualisationControl
-
Deprecated.
- transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.WorkflowHelper
-
Deprecated.
- transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation.NavigationComponentView
- transactionStarted(TransactionEvent) - Method in class org.graffiti.editor.StatusBar
- transactionStarted(TransactionEvent) - Method in class org.graffiti.event.AbstractAttributeListener
-
Called after a transaction has been started.
- transactionStarted(TransactionEvent) - Method in class org.graffiti.event.AbstractEdgeListener
-
Called after a transaction has been started.
- transactionStarted(TransactionEvent) - Method in class org.graffiti.event.AbstractGraphListener
-
Called before a transaction has been started.
- transactionStarted(TransactionEvent) - Method in class org.graffiti.event.AbstractNodeListener
-
Called after a transaction has been started.
- transactionStarted(TransactionEvent) - Method in class org.graffiti.event.AttributeAdapter
- transactionStarted(TransactionEvent) - Method in class org.graffiti.event.EdgeAdapter
- transactionStarted(TransactionEvent) - Method in class org.graffiti.event.GraphAdapter
- transactionStarted(TransactionEvent) - Method in class org.graffiti.event.NodeAdapter
- transactionStarted(TransactionEvent) - Method in class org.graffiti.event.TransactionAdapter
- transactionStarted(TransactionEvent) - Method in interface org.graffiti.event.TransactionListener
-
Called when a transaction has started.
- transactionStarted(TransactionEvent) - Method in class org.graffiti.plugin.editcomponent.GraphComponentEditComponent
-
Called if a transaction got started.
- transactionStarted(TransactionEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
- transactionStarted(TransactionEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter
-
Called if a transaction got started.
- transactionStarted(TransactionEvent) - Method in class org.graffiti.plugin.inspector.SubtabHostTab
- transactionStarted(TransactionEvent) - Method in class org.graffiti.plugin.view.AbstractView
-
Called when a transaction has started.
- transactionStarted(TransactionEvent) - Method in class org.graffiti.plugins.inspectors.defaults.AbstractTab
- transactionStarted(TransactionEvent) - Method in class org.graffiti.plugins.views.defaults.GraffitiView
- transactionStarted(TransactionEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixModel
- transactionStarted(TransactionEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
- transactionStarted(TransactionEvent) - Method in class org.graffiti.session.GraphConstraintChecker
-
Called when a transaction has started.
- TransferableObject - Class in net.iharder.dnd
-
At last an easy way to encapsulate your custom objects for dragging and dropping in your Java programs! When you need to create a
Transferable
object, use this class to wrap your object. - TransferableObject(Class<?>, TransferableObject.Fetcher) - Constructor for class net.iharder.dnd.TransferableObject
-
Creates a new
TransferableObject
that will return the object that is returned by fetcher. - TransferableObject(Object) - Constructor for class net.iharder.dnd.TransferableObject
-
Creates a new
TransferableObject
that wraps data. - TransferableObject(TransferableObject.Fetcher) - Constructor for class net.iharder.dnd.TransferableObject
-
Creates a new
TransferableObject
that will return the object that is returned by fetcher. - TransferableObject.Fetcher - Interface in net.iharder.dnd
-
Instead of passing your data directly to the
TransferableObject
constructor, you may want to know exactly when your data was received in case you need to remove it from its source (or do anyting else to it). - transformsDataList() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.AttributeCalculation
- TransitionShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
- TransitionShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TransitionShape
- translateDateToJava2D(Date, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.DateAxis
-
Deprecated.Use dataToJava2D() instead.
- translateJava2DToScreen(Point2D) - Method in class org.jfree.chart.ChartPanel
-
Translates a Java2D point on the chart to a screen location.
- translateJava2DtoValue(float, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.ValueAxis
-
Deprecated.Use translateJava2DToValue(double, ...).
- translateJava2DToValue(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.DateAxis
-
Deprecated.Use java2DToValue instead.
- translateJava2DToValue(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.LogarithmicAxis
-
Deprecated.Use java2DToValue().
- translateJava2DToValue(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.NumberAxis
-
Deprecated.Use java2DToValue() instead.
- translateJava2DToValue(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.ValueAxis
-
Deprecated.Use java2DToValue instead.
- translateScreenToJava2D(Point) - Method in class org.jfree.chart.ChartPanel
-
Translates a screen location to a Java2D point.
- translateValueThetaRadiusToJava2D(double, double, Rectangle2D) - Method in class org.jfree.chart.plot.PolarPlot
-
Translates a (theta, radius) pair into Java2D coordinates.
- translateValueToJava2D(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.DateAxis
-
Deprecated.Use valueToJava2D instead.
- translateValueToJava2D(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.LogarithmicAxis
-
Deprecated.Use valueToJava2D().
- translateValueToJava2D(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.NumberAxis
-
Deprecated.Use valueToJava2D() instead.
- translateValueToJava2D(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.ValueAxis
-
Deprecated.Use valueToJava2D instead.
- TRANSPATH_ACCESS - org.FeatureSet
- TranspathEntity - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
- TranspathEntity() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathEntity
- TranspathEntityType - Interface in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
- TranspathGene - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
- TranspathGene() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathGene
- TranspathMolecule - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
- TranspathMolecule() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathMolecule
- TranspathPathway - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
- TranspathPathway() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathPathway
- TranspathPathwayLoader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.commands
- TranspathPathwayLoader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.commands.TranspathPathwayLoader
- TranspathReaction - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
- TranspathReaction() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReaction
- TranspathReference - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
- TranspathReference() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReference
- TranspathService - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
- TranspathService() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathService
- TranspathXMLparser - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
- TranspathXMLparser(Map<String, TranspathEntityType>, Class<?>, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathXMLparser
- treatment - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow
- TREATMENT - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition.ConditionInfo
- TreeAttributSearcher - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility
-
enumerates the attributes of the given node / attributable in a path --> attribute map
- TreeAttributSearcher() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.TreeAttributSearcher
- TreeContainer - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree
-
Contains additional informations about each tree in the forest.
- TreeContainer(HashMap<Integer, Double>, HashMap<Node, Integer>, HashMap<Integer, Double>, HashMap<Node, Integer>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.TreeContainer
- TreeContainer(HashMap<Node, Integer>, HashMap<Integer, Double>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.TreeContainer
- TreeContainer(HashMap<Node, Integer>, HashMap<Integer, Double>, HashSet<Edge>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.TreeContainer
- TreeContainer(LinkedList<?>, HashMap<Integer, Double>, HashMap<Node, Integer>, HashMap<Integer, Double>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.TreeContainer
- TreeTableCellEditor() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.JTreeTable.TreeTableCellEditor
- TreeTableCellRenderer(TreeModel) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.JTreeTable.TreeTableCellRenderer
- TreeTableModel - Interface in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model
-
TreeTableModel is the model used by a JTreeTable.
- TreeTableModelAdapter - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model
-
This is a wrapper class takes a TreeTableModel and implements the table model interface.
- TreeTableModelAdapter(TreeTableModel, JTree) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.TreeTableModelAdapter
- TRIGGER_FUNCTION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
- triggerArrow - Static variable in class org.graffiti.plugins.editcomponents.defaults.EdgeArrowShapeEditComponent
- TriggerArrowShape - Class in org.graffiti.plugins.views.defaults
-
DOCUMENT ME!
- TriggerArrowShape() - Constructor for class org.graffiti.plugins.views.defaults.TriggerArrowShape
-
Constructs a new arrow.
- TriggerArrowShape(float) - Constructor for class org.graffiti.plugins.views.defaults.TriggerArrowShape
- trimKnownPrefixes(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeEntry
- trimToSize() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment
- trimToSize() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface
- TristateCheckBox - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui
-
Maintenance tip - There were some tricks to getting this code working: 1.
- TristateCheckBox() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.TristateCheckBox
- TristateCheckBox(String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.TristateCheckBox
- TristateCheckBox(String, TristateCheckBox.State) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.TristateCheckBox
- TristateCheckBox(String, Icon, TristateCheckBox.State) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.TristateCheckBox
- TristateCheckBox.State - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui
-
This is a type-safe enumerated type
- TRUNCATE - Static variable in class org.jfree.chart.renderer.AreaRendererEndType
-
The area is truncated at the first or last value.
- TruncProteinShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
- TruncProteinShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TruncProteinShape
- tryGetDBEISloginUrlParameters() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.PasswordDialog
- tryMakingNewInstance(T) - Static method in enum org.vanted.plugins.layout.multilevelframework.MlfHelper
-
Create new instances of the layouters to avoid interfering with the ones that VANTED holds.
- TtestInfo - Enum in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper
- ttestIsH1(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper
- ttestIsReference - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint
- tTestIsReference(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper
- ttestIsSignificantDifferent - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint
- tTestSetSampleAsReference(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper
- tTestSetSampleSignificane(Node, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper
- Tvertp(double, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.StatisticTable
- Tvertz(double, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.StatisticTable
- TWO - org.vanted.animation.NumberOfLoops
- TYPE - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathMolecule
- TYPE - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathPathway
- TYPE - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReaction
- TYPE_ATTRIBUTE_LITERAL - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLConstants
- TypedAttributeService - Class in org.graffiti.plugins.ios.importers
- TypedAttributeService() - Constructor for class org.graffiti.plugins.ios.importers.TypedAttributeService
- tzweiseitig(int, double) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.StatisticTable
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