Index

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _ 
All Classes|All Packages

T

TAB_LAYOUT - org.FeatureSet
 
TAB_LEADING - Static variable in class org.graffiti.plugin.inspector.InspectorTab
 
TAB_PATTERNSEARCH - org.FeatureSet
 
TAB_RANDOM - Static variable in class org.graffiti.plugin.inspector.InspectorTab
 
TAB_TRAILING - Static variable in class org.graffiti.plugin.inspector.InspectorTab
 
TabAglet - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network
Represents the tab, which contains the functionality to edit the attributes of the current graph object.
TabAglet() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network.TabAglet
Constructs a PatternTab and sets the title.
TabBiomodels - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels
 
TabBiomodels() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.TabBiomodels
 
TabDBE - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe
 
TabDBE() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TabDBE
Constructs a PatternTab and sets the title.
TabExampleFiles - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow
 
TabExampleFiles() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.TabExampleFiles
 
TabKegg - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg
 
TabKegg() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.TabKegg
 
tableChanged(TableModelEvent) - Method in class org.graffiti.managers.pluginmgr.PluginManagerDialog
Called if the contents of the pluginsTable changed.
TableData - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe
 
TableData() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData
 
TableData(TableData, boolean, int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData
 
TableDataTest - Class in qmwi.kseg.som.diagram
Insert the type's description here.
TableDataTest() - Constructor for class qmwi.kseg.som.diagram.TableDataTest
LeftWindowTableData constructor comment.
TableDataTest(DataSet) - Constructor for class qmwi.kseg.som.diagram.TableDataTest
Insert the method's description here.
TableLayout - Class in info.clearthought.layout
TableLayout is a layout manager that arranges components in rows and columns like a spreadsheet.
TableLayout() - Constructor for class info.clearthought.layout.TableLayout
Constructs an instance of TableLayout.
TableLayout(double[][]) - Constructor for class info.clearthought.layout.TableLayout
Constructs an instance of TableLayout.
TableLayoutConstants - Interface in info.clearthought.layout
Constants used by TableLayout.
TableLayoutConstraints - Class in info.clearthought.layout
The following inner class is used to bind components to their constraints.
TableLayoutConstraints() - Constructor for class info.clearthought.layout.TableLayoutConstraints
Constructs an TableLayoutConstraints with the default settings.
TableLayoutConstraints(int, int, int, int, int, int) - Constructor for class info.clearthought.layout.TableLayoutConstraints
Constructs an TableLayoutConstraints a set of constraints.
TableLayoutConstraints(String) - Constructor for class info.clearthought.layout.TableLayoutConstraints
Constructs an TableLayoutConstraints from a string.
TableXYDataset - Interface in org.jfree.data
A dataset containing one or more data series containing (x, y) data items, where all series in the dataset share the same set of x-values.
TabMetaCrop - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop
 
TabMetaCrop() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.TabMetaCrop
 
TabMetaCrop(String, String, String, String, String, boolean, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.TabMetaCrop
 
TabNetworkAlgorithms - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network
 
TabNetworkAlgorithms() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network.TabNetworkAlgorithms
 
TabPatternLayout - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control
Represents the tab, which contains the functionality to edit the attributes of the current graph object.
TabPatternLayout() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPatternLayout
* Constructs a PatternTab and sets the title.
TabPluginControl - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control
Represents the tab, which contains the functionality to edit the attributes of the current graph object.
TabPluginControl() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPluginControl
Constructs a PatternTab and sets the title.
TabStatistics - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics
 
TabStatistics() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics
Constructs a PatternTab and sets the title.
TabVisualisationControl - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control
Deprecated.
Do not use, will be removed in future.
TabVisualisationControl() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabVisualisationControl
Deprecated.
Constructs a PatternTab and sets the title.
TagDownShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
 
TagDownShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TagDownShape
 
TagLeftShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
 
TagLeftShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TagLeftShape
 
TagRightShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
 
TagRightShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TagRightShape
 
TagUpShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
 
TagUpShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TagUpShape
 
TAPER - Static variable in class org.jfree.chart.renderer.AreaRendererEndType
The area tapers from the first or last value down to zero.
TARGET - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
 
TARGET - Static variable in class org.graffiti.plugins.ios.importers.gml.sym
 
TARGET_ATTRIBUTE_LITERAL - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLConstants
 
targetCountEdges - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.MapResult
 
targetCountNodes - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.MapResult
 
TargetDockingAttribute - Class in org.graffiti.graphics
 
TargetDockingAttribute() - Constructor for class org.graffiti.graphics.TargetDockingAttribute
 
TargetDockingAttribute(String, String) - Constructor for class org.graffiti.graphics.TargetDockingAttribute
 
targetMenu - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.BSHinfo
 
targetY - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.TargetYandNewNodeResult
 
TargetYandNewNodeResult - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references
 
TargetYandNewNodeResult(double, Node) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.TargetYandNewNodeResult
 
Task - Class in org.jfree.data.gantt
A simple representation of a task.
Task(String, Date, Date) - Constructor for class org.jfree.data.gantt.Task
Creates a new task.
Task(String, TimePeriod) - Constructor for class org.jfree.data.gantt.Task
Creates a new task.
TaskSeries - Class in org.jfree.data.gantt
A series that contains zero, one or many Task objects.
TaskSeries(String) - Constructor for class org.jfree.data.gantt.TaskSeries
Constructs a new series with the specified name.
TaskSeriesCollection - Class in org.jfree.data.gantt
A collection of TaskSeries objects.
TaskSeriesCollection() - Constructor for class org.jfree.data.gantt.TaskSeriesCollection
Default constructor.
TAXONOMY - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter.QueryType
 
TeeStream - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml
 
TeeStream(PrintStream, PrintStream) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.TeeStream
 
teinseitig(int, double) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.StatisticTable
 
temp_alpha - Variable in class org.graffiti.plugin.algorithm.ThreadSafeOptions
Run parameter.
temperature_max_move - Variable in class org.graffiti.plugin.algorithm.ThreadSafeOptions
Run parameter.
Template - Class in de.ipk_gatersleben.ag_pbi.datahandling
 
Template() - Constructor for class de.ipk_gatersleben.ag_pbi.datahandling.Template
 
TemplateFile - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe
 
TemplateFile(String, URL, RunnableForFile) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TemplateFile
 
TemplateFileManager - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe
 
TemplateLoader - Class in de.ipk_gatersleben.ag_pbi.datahandling
 
TemplateLoader() - Constructor for class de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoader
 
TemplateLoaderInstance - Class in de.ipk_gatersleben.ag_pbi.datahandling
 
TemplateLoaderInstance(File, TemplateLoader) - Constructor for class de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoaderInstance
 
TemplateLoaderInterface - Interface in de.ipk_gatersleben.ag_pbi.datahandling
 
TemplateManager - Class in de.ipk_gatersleben.ag_pbi.datahandling
 
Test - Class in qmwi.kseg.som.diagram
Insert the type's description here.
Test() - Constructor for class qmwi.kseg.som.diagram.Test
Test constructor comment.
testGML2Pathway2GML() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway
 
TestImageExport - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter
 
TestImageExport() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.TestImageExport
 
testShowPathwayComparison(Pathway, Pathway, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway
Compare two pathways
testShowPathwayInfo(Pathway) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway
 
Testttt - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance
 
Testttt() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.Testttt
 
TestValueRequired - Annotation Type in unit_test_support
Use this annotation to ensure that value used by the random property setter is different from NULL.
TextAnnotation - Class in org.jfree.chart.annotations
A base class for text annotations.
TextAreaEditComponent - Class in org.graffiti.plugins.editcomponents.defaults
DOCUMENT ME!
TextAreaEditComponent(StringAttribute) - Constructor for class org.graffiti.plugins.editcomponents.defaults.TextAreaEditComponent
Constructor for TextAreaEditComponent.
TextAreaEditComponent(Displayable) - Constructor for class org.graffiti.plugins.editcomponents.defaults.TextAreaEditComponent
Constructor for TextAreaEditComponent.
TEXTCOLOR - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
 
TextFile - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart
 
TextFile() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.TextFile
 
TextFile(InputStream, int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.TextFile
 
TextFile(Reader) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.TextFile
 
TextFile(String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.TextFile
 
TextFile(URL) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.TextFile
 
TextFile(URL, boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.TextFile
 
TextFileColumnInformation - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression
 
TextFileColumnInformation(String, int, Integer) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.TextFileColumnInformation
 
TextListReader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list
edges in list form S T W (header) a b 0.3 c b 0.7 % comment a c 1.0 or simple text format (see http://www.graphdrawing.de/contest2009/gdcategories2009.html): # Nodes Id1,40,40,20,20 Id2,40,40,100,100 Id3,40,40 # Edges Id1,Id2,40,20,100,20,100,80 Id3,Id2
TextListReader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list.TextListReader
 
TextListReaderPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list
 
TextListReaderPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list.TextListReaderPlugin
 
TextTitle - Class in org.jfree.chart.title
A chart title that displays a text string.
TextTitle() - Constructor for class org.jfree.chart.title.TextTitle
Creates a new title, using default attributes where necessary.
TextTitle(String) - Constructor for class org.jfree.chart.title.TextTitle
Creates a new title, using default attributes where necessary.
TextTitle(String, Font) - Constructor for class org.jfree.chart.title.TextTitle
Creates a new title, using default attributes where necessary.
TextTitle(String, Font, Paint) - Constructor for class org.jfree.chart.title.TextTitle
Creates a new title, using default attributes where necessary.
TextTitle(String, Font, Paint, RectangleEdge, HorizontalAlignment, VerticalAlignment, Spacer) - Constructor for class org.jfree.chart.title.TextTitle
Creates a new title.
TextTitle(String, Font, HorizontalAlignment) - Constructor for class org.jfree.chart.title.TextTitle
Creates a new title, using default attributes where necessary.
then(StatefulAccumulator<?, O>) - Method in class org.vanted.indexednodes.accumulators.StatefulAccumulator
Compose with another accumulator
ThermometerDemo - Class in org.jfree.chart.demo
A demonstration application for the thermometer plot.
ThermometerDemo() - Constructor for class org.jfree.chart.demo.ThermometerDemo
Default constructor.
ThermometerDemo2 - Class in org.jfree.chart.demo
A simple demonstration application showing how to create a thermometer.
ThermometerDemo2(String) - Constructor for class org.jfree.chart.demo.ThermometerDemo2
Creates a new demo.
ThermometerPlot - Class in org.jfree.chart.plot
A plot that displays a single value (from a ValueDataset) in a thermometer type display.
ThermometerPlot() - Constructor for class org.jfree.chart.plot.ThermometerPlot
Creates a new thermometer plot.
ThermometerPlot(ValueDataset) - Constructor for class org.jfree.chart.plot.ThermometerPlot
Creates a new thermometer plot, using default attributes where necessary.
THICKNESS - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
Thickness of the Arrow Head (may be "1" for "auto-size")
ThicknessAttribute - Class in org.graffiti.graphics
 
ThicknessAttribute(String) - Constructor for class org.graffiti.graphics.ThicknessAttribute
 
ThicknessAttribute(String, double) - Constructor for class org.graffiti.graphics.ThicknessAttribute
 
ThicknessAttribute(String, Double) - Constructor for class org.graffiti.graphics.ThicknessAttribute
 
ThicknessAttributeEditor - Class in org.graffiti.plugins.views.defaults
 
ThicknessAttributeEditor(Displayable) - Constructor for class org.graffiti.plugins.views.defaults.ThicknessAttributeEditor
 
ThicknessAttributeEditor.ArrowHeadModes - Enum in org.graffiti.plugins.views.defaults
 
thinCircleArrow - Static variable in class org.graffiti.plugins.editcomponents.defaults.EdgeArrowShapeEditComponent
 
thinDiamondArrow - Static variable in class org.graffiti.plugins.editcomponents.defaults.EdgeArrowShapeEditComponent
 
thinStandardArrow - Static variable in class org.graffiti.plugins.editcomponents.defaults.EdgeArrowShapeEditComponent
 
threadedRedraw - Variable in class org.graffiti.plugins.views.defaults.GraffitiView
 
ThreadSafeAlgorithm - Class in org.graffiti.plugin.algorithm
DOCUMENT ME!
ThreadSafeAlgorithm() - Constructor for class org.graffiti.plugin.algorithm.ThreadSafeAlgorithm
 
ThreadSafeOptions - Class in org.graffiti.plugin.algorithm
This class can be used for thread safe communication between user interfaces and plugins.
ThreadSafeOptions() - Constructor for class org.graffiti.plugin.algorithm.ThreadSafeOptions
 
threadSettingsChanged - Variable in class org.graffiti.plugin.algorithm.ThreadSafeOptions
A second variable for changed settigns.
THREE - org.vanted.animation.NumberOfLoops
 
throwFileNew() - Method in class org.graffiti.editor.actions.FileHandlingManager
 
throwFileOpened(File) - Method in class org.graffiti.editor.actions.FileHandlingManager
 
throwFileSaved(File, String, Graph) - Method in class org.graffiti.editor.actions.FileHandlingManager
 
throwFileSavedAs(File, File) - Method in class org.graffiti.editor.actions.FileHandlingManager
 
Tick - Class in org.jfree.chart.axis
Represents the dimensions of a tick on an axis (used during the process of drawing a chart, but not retained).
Tick(String, TextAnchor, TextAnchor, double) - Constructor for class org.jfree.chart.axis.Tick
Creates a new tick.
TickLabelEntity - Class in org.jfree.chart.entity
A chart entity representing a tick label.
TickLabelEntity(Shape, String, String) - Constructor for class org.jfree.chart.entity.TickLabelEntity
Creates a new entity.
TickUnit - Class in org.jfree.chart.axis
Base class representing a tick unit.
TickUnit(double) - Constructor for class org.jfree.chart.axis.TickUnit
Constructs a new tick unit.
TickUnits - Class in org.jfree.chart.axis
A collection of tick units.
TickUnits() - Constructor for class org.jfree.chart.axis.TickUnits
Constructs a new collection of tick units.
TickUnitSource - Interface in org.jfree.chart.axis
An interface used by the DateAxis and NumberAxis classes to obtain a suitable TickUnit.
Tie - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics
 
Tie(double, int, double) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.Tie
 
TILED - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
 
TIME_UNITS - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
 
TimeAndPlantName - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe
 
TimeAndPlantName(String, int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TimeAndPlantName
 
TimeAndTimeUnit - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes
 
TimeAndTimeUnit(String, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.TimeAndTimeUnit
 
timeDefaultBeatTime - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network.BroadCastTask
 
Timeline - Interface in org.jfree.chart.axis
An interface that defines the contract for a Timeline.
TimePeriod - Interface in org.jfree.data.time
A period of time measured to millisecond precision using java.util.Date.
TimePeriodAnchor - Class in org.jfree.data.time
Used to indicate one of three positions in a time period: START, MIDDLE and END.
TimePeriodFormatException - Exception in org.jfree.data.time
An exception that indicates an invalid format in a string representing a time period.
TimePeriodFormatException(String) - Constructor for exception org.jfree.data.time.TimePeriodFormatException
Creates a new exception.
TimePeriodValue - Class in org.jfree.data.time
Represents a time period and an associated value.
TimePeriodValue(TimePeriod, double) - Constructor for class org.jfree.data.time.TimePeriodValue
Constructs a new data pair.
TimePeriodValue(TimePeriod, Number) - Constructor for class org.jfree.data.time.TimePeriodValue
Constructs a new data item.
TimePeriodValues - Class in org.jfree.data.time
A structure containing zero, one or many TimePeriodValue instances.
TimePeriodValues(String) - Constructor for class org.jfree.data.time.TimePeriodValues
Creates a new (empty) collection of time period values.
TimePeriodValues(String, String, String) - Constructor for class org.jfree.data.time.TimePeriodValues
Creates a new time series that contains no data.
TimePeriodValuesCollection - Class in org.jfree.data.time
A collection of TimePeriodValues objects.
TimePeriodValuesCollection() - Constructor for class org.jfree.data.time.TimePeriodValuesCollection
Constructs an empty dataset, tied to the default timezone.
TimePeriodValuesCollection(TimeZone) - Constructor for class org.jfree.data.time.TimePeriodValuesCollection
Deprecated.
The TimeZone is ignored, use an alternative constructor.
TimePeriodValuesCollection(TimePeriodValues) - Constructor for class org.jfree.data.time.TimePeriodValuesCollection
Constructs a dataset containing a single series.
TimePeriodValuesCollection(TimePeriodValues, TimeZone) - Constructor for class org.jfree.data.time.TimePeriodValuesCollection
Deprecated.
TimeZone parameter is not used.
TimePeriodValuesDemo - Class in org.jfree.chart.demo
An example of....
TimePeriodValuesDemo(String) - Constructor for class org.jfree.chart.demo.TimePeriodValuesDemo
A demonstration application showing how to....
TimePeriodValuesDemo2 - Class in org.jfree.chart.demo
An example of....
TimePeriodValuesDemo2(String) - Constructor for class org.jfree.chart.demo.TimePeriodValuesDemo2
A demonstration application showing how to....
TimePeriodValuesDemo3 - Class in org.jfree.chart.demo
This demo shows a bar chart with time based data where the time periods are slightly irregular.
TimePeriodValuesDemo3(String) - Constructor for class org.jfree.chart.demo.TimePeriodValuesDemo3
Creates a new demo instance.
TimePoint<T> - Class in org.vanted.animation.data
 
TimePoint(double, T) - Constructor for class org.vanted.animation.data.TimePoint
 
timeS - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow
 
TimeSeries - Class in org.jfree.data.time
Represents a sequence of zero or more data items in the form (period, value).
TimeSeries(String) - Constructor for class org.jfree.data.time.TimeSeries
Creates a new (empty) time series.
TimeSeries(String, Class) - Constructor for class org.jfree.data.time.TimeSeries
Creates a new (empty) time series.
TimeSeries(String, String, String, Class) - Constructor for class org.jfree.data.time.TimeSeries
Creates a new time series that contains no data.
TimeSeriesCollection - Class in org.jfree.data.time
A collection of time series objects.
TimeSeriesCollection() - Constructor for class org.jfree.data.time.TimeSeriesCollection
Constructs an empty dataset, tied to the default timezone.
TimeSeriesCollection(TimeZone) - Constructor for class org.jfree.data.time.TimeSeriesCollection
Constructs an empty dataset, tied to a specific timezone.
TimeSeriesCollection(TimeSeries) - Constructor for class org.jfree.data.time.TimeSeriesCollection
Constructs a dataset containing a single series (more can be added), tied to the default timezone.
TimeSeriesCollection(TimeSeries, TimeZone) - Constructor for class org.jfree.data.time.TimeSeriesCollection
Constructs a dataset containing a single series (more can be added), tied to a specific timezone.
TimeSeriesDataItem - Class in org.jfree.data.time
Represents one data item in a time series.
TimeSeriesDataItem(RegularTimePeriod, double) - Constructor for class org.jfree.data.time.TimeSeriesDataItem
Constructs a new data item that associates a value with a time period.
TimeSeriesDataItem(RegularTimePeriod, Number) - Constructor for class org.jfree.data.time.TimeSeriesDataItem
Constructs a new data item that associates a value with a time period.
TimeSeriesDemo - Class in org.jfree.chart.demo
An example of a time series chart.
TimeSeriesDemo(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo
A demonstration application showing how to create a simple time series chart.
TimeSeriesDemo10 - Class in org.jfree.chart.demo
A demo showing a time series with per minute data.
TimeSeriesDemo10(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo10
A demonstration application.
TimeSeriesDemo11 - Class in org.jfree.chart.demo
An example of....
TimeSeriesDemo11(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo11
A demonstration application showing how to...
TimeSeriesDemo12 - Class in org.jfree.chart.demo
A demo.
TimeSeriesDemo12(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo12
A demo.
TimeSeriesDemo13 - Class in org.jfree.chart.demo
This demo shows two charts that use weekly data.
TimeSeriesDemo13(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo13
Creates a new demo instance.
TimeSeriesDemo2 - Class in org.jfree.chart.demo
A demo showing a time series (quarterly data) with a null value.
TimeSeriesDemo2(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo2
A demonstration application showing a quarterly time series containing a null value.
TimeSeriesDemo3 - Class in org.jfree.chart.demo
A time series demo, with monthly data, where the tick unit on the axis is set to one month also (this switches off the auto tick unit selection, and *can* result in overlapping labels).
TimeSeriesDemo3(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo3
A demonstration application showing a quarterly time series containing a null value.
TimeSeriesDemo4 - Class in org.jfree.chart.demo
An example of a time series chart using hourly data and including a null value.
TimeSeriesDemo4(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo4
A demonstration application showing a quarterly time series containing a null value.
TimeSeriesDemo5 - Class in org.jfree.chart.demo
A time series chart with 4000 data points, to get an idea of how JFreeChart performs with a larger dataset.
TimeSeriesDemo5(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo5
Creates a new demo instance.
TimeSeriesDemo6 - Class in org.jfree.chart.demo
A time series chart with all zero data.
TimeSeriesDemo6(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo6
Creates a new instance.
TimeSeriesDemo7 - Class in org.jfree.chart.demo
A time series chart.
TimeSeriesDemo7(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo7
A demonstration application showing how to create a simple time series chart.
TimeSeriesDemo8 - Class in org.jfree.chart.demo
A time series chart.
TimeSeriesDemo8(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo8
A demonstration application showing how to create a simple time series chart.
TimeSeriesDemo9 - Class in org.jfree.chart.demo
An example of a time series chart.
TimeSeriesDemo9(String) - Constructor for class org.jfree.chart.demo.TimeSeriesDemo9
A demonstration application showing how to create a simple time series chart.
TimeSeriesTableModel - Class in org.jfree.data
Wrapper around a time series to convert it to a table model for use in a JTable.
TimeSeriesTableModel() - Constructor for class org.jfree.data.TimeSeriesTableModel
Default constructor.
TimeSeriesTableModel(TimeSeries) - Constructor for class org.jfree.data.TimeSeriesTableModel
Constructs a table model for a time series.
TimeSeriesTableModel(TimeSeries, boolean) - Constructor for class org.jfree.data.TimeSeriesTableModel
Creates a table model based on a time series.
TimeSeriesURLGenerator - Class in org.jfree.chart.urls
A URL generator.
TimeSeriesURLGenerator() - Constructor for class org.jfree.chart.urls.TimeSeriesURLGenerator
Blank constructor
TimeSeriesURLGenerator(DateFormat, String, String, String) - Constructor for class org.jfree.chart.urls.TimeSeriesURLGenerator
Construct TimeSeriesURLGenerator overriding defaults
TimeTableXYDataset - Class in org.jfree.data.time
A dataset for regular time periods that implements the TableXYDataset interface.
TimeTableXYDataset() - Constructor for class org.jfree.data.time.TimeTableXYDataset
Creates a new TimeTableDataset.
TimeTableXYDataset(TimeZone) - Constructor for class org.jfree.data.time.TimeTableXYDataset
Creates a new TimeTableDataset with the given time zone.
TimeTableXYDataset(TimeZone, Locale) - Constructor for class org.jfree.data.time.TimeTableXYDataset
Creates a new TimeTableDataset with the given time zone and locale.
timeUnit - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow
 
timeUnit - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint
 
timeUnitAndTime - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint
 
timeValue - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint
 
timeValue - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.MyComparableNode
 
timeValueForComparision - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint
 
tinvers(double, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.StatisticTable
 
Title - Class in org.jfree.chart.title
The base class for all chart titles.
TITLE - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReference
 
titleChanged(TitleChangeEvent) - Method in interface org.jfree.chart.event.TitleChangeListener
Receives notification of a chart title change event.
titleChanged(TitleChangeEvent) - Method in class org.jfree.chart.JFreeChart
Receives notification that a chart title has changed, and passes this on to registered listeners.
TitleChangeEvent - Class in org.jfree.chart.event
A change event that encapsulates information about a change to a chart title.
TitleChangeEvent(Title) - Constructor for class org.jfree.chart.event.TitleChangeEvent
Default constructor.
TitleChangeListener - Interface in org.jfree.chart.event
The interface that must be supported by classes that wish to receive notification of changes to a chart title.
TitlePropertyEditPanel - Class in org.jfree.chart.ui
A panel for editing the properties of a chart title.
TitlePropertyEditPanel(Title) - Constructor for class org.jfree.chart.ui.TitlePropertyEditPanel
Standard constructor: builds a panel for displaying/editing the properties of the specified title.
toArray() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
 
toArray() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
 
toArray() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment
 
toArray() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface
 
toArray() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample
 
toArray() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface
 
toArray() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
 
toArray() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
 
toArray(T[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
 
toArray(T[]) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
 
toArray(T[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment
 
toArray(T[]) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface
 
toArray(T[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample
 
toArray(T[]) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface
 
toArray(T[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
 
toArray(T[]) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
 
toBeAdded() - Method in class org.graffiti.selection.SelectionEvent
Returns the added.
toDataValue(double[]) - Method in class org.vanted.animation.data.ColorTimePoint
 
toDataValue(double[]) - Method in class org.vanted.animation.data.DoubleTimePoint
 
toDataValue(double[]) - Method in class org.vanted.animation.data.InterpolatableTimePoint
toDataValue(double[]) - Method in class org.vanted.animation.data.Point2DTimePoint
 
toDataValue(double[]) - Method in class org.vanted.animation.data.VectorTimePoint
 
toggleAutoRange() - Method in class org.jfree.chart.ui.ColorBarPropertyEditPanel
Toggle the auto range setting.
toGMLstring() - Method in enum org.AlignmentSetting
 
toGMLstring() - Method in enum org.LabelFrameSetting
 
toMillisecond(long) - Method in class org.jfree.chart.axis.SegmentedTimeline
Translates a value relative to the timeline into a millisecond.
toMillisecond(long) - Method in interface org.jfree.chart.axis.Timeline
Translates a value relative to this timeline into a domain value.
Tool - Interface in org.graffiti.plugin.tool
A Tool executes a specified action on a ConstrainedGraph.
ToolBarLayout - Class in org.graffiti.util
An extension of FlowLayout that correctly calculates the height of a toolbar panel.
ToolBarLayout() - Constructor for class org.graffiti.util.ToolBarLayout
 
ToolBarLayout(int) - Constructor for class org.graffiti.util.ToolBarLayout
 
ToolBarLayout(int, int, int) - Constructor for class org.graffiti.util.ToolBarLayout
 
ToolBarOptionPane - Class in org.graffiti.editor.options
A tool bar editor.
ToolBarOptionPane(Preferences) - Constructor for class org.graffiti.editor.options.ToolBarOptionPane
Constructor for ToolBarOptionPane.
Toolbox - Class in org.vanted.scaling
An utility class holding some handy methods for tweaking the scaling of some components, where necessary.
Toolbox() - Constructor for class org.vanted.scaling.Toolbox
 
ToolButton - Class in org.graffiti.plugin.gui
DOCUMENT ME!
ToolButton(Tool) - Constructor for class org.graffiti.plugin.gui.ToolButton
Constructor that sets the buttons tool to the given Tool.
ToolButton(Tool, String) - Constructor for class org.graffiti.plugin.gui.ToolButton
Creates a new ToolButton object.
ToolButton(Tool, String, String) - Constructor for class org.graffiti.plugin.gui.ToolButton
Creates a new ToolButton object.
ToolButton(Tool, String, ImageIcon) - Constructor for class org.graffiti.plugin.gui.ToolButton
Creates a new ToolButton object.
ToolManager - Interface in org.graffiti.managers
An interface for managing a list of tools.
tools - Variable in class org.graffiti.plugin.EditorPluginAdapter
The tools the plugin provides.
Tools - Class in qmwi.kseg.som
 
Tools() - Constructor for class qmwi.kseg.som.Tools
 
ToolTipHelper - Class in org.graffiti.plugin
 
ToolTipHelper() - Constructor for class org.graffiti.plugin.ToolTipHelper
 
TOOLTIPS - org.FeatureSet
 
ToolTipTagFragmentGenerator - Interface in org.jfree.chart.imagemap
Interface for generating the tooltip fragment of an HTML image map area tag.
TOP - org.graffiti.plugins.attributecomponents.simplelabel.Quadrant
 
TOP - org.graffiti.plugins.views.defaults.Line
 
TOP - Static variable in class info.clearthought.layout.SingleFiledLayout
Top justify components
TOP - Static variable in interface info.clearthought.layout.TableLayoutConstants
Indicates that the component is top justified in its cell
TOP - Static variable in class org.jfree.chart.renderer.LineAndShapeRenderer
Constant indicating that labels are to be shown above data points
TOP - Static variable in class org.jfree.chart.title.Title
Useful constant for the title position (also used for vertical alignment).
TOP_LEFT - org.graffiti.plugins.views.defaults.Corner
 
TOP_OR_LEFT - Static variable in class org.jfree.chart.axis.AxisLocation
Axis at the top or left.
TOP_OR_RIGHT - Static variable in class org.jfree.chart.axis.AxisLocation
Axis at the top or right.
TOP_RIGHT - org.graffiti.plugins.views.defaults.Corner
 
topN - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOperation
 
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.NodeSortCommand
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.exact_fisher_test.ContTable
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionEntry
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KoEntry
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzClassEntry
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.QuadNumber
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathPathway
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReaction
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.LineModeSetting
 
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.GraffitiCharts
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_editing.DBGETresult
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetTable
 
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.LegendType
 
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.FisherOperationMode
 
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition.ConditionInfo
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
 
toString() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.DataMappingId
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader
 
toString() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
 
toString() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
 
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.TtestInfo
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint
 
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter.QueryType
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.SimpleModel
Returns a string representation of the object.
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DataRowExcelExport
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ProjectEntity
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TimeAndPlantName
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.SpecialTableValue
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.TimeAndTimeUnit
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggPathwayEntry
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.OrganismEntry
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkItem
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkTreeNode
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyXML_XYDataset
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.LookAndFeelWrapper
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.PrettyObject
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings.MyPluginTreeNode
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate.RotateAlgorithm
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kgml.Vector2d
 
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.EntryType
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.Id
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.IdRef
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.kgmlColor
 
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.kgmlGraphicsType
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.kgmlNumber
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.MapNumber
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.MapOrg
 
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.ReactionType
 
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.RelationType
 
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.SubtypeName
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.SubtypeValue
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.Url
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Entry
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayErrorInformation
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Gml2PathwayWarningInformation
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.IndexAndString
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.NodeCombination
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Reaction
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Subtype
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.copy_pattern_layout.CopyPatternLayoutAlgorithm
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache.PatternSpringembedder
DOCUMENT ME!
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BundleParallelEdges.Shapes
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder3d
 
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.AttributeCalculation
 
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.ModeOfAttributeOperation
 
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.HideOrShowChildNodes.HideOrShowOperation
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.AttributePathNameSearchType
 
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchType
 
toString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayLinkVisualizationComponent
 
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.SetLabelModeOfOperation
 
toString() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SizeSettingZoom
 
toString() - Method in class de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoader
 
toString() - Method in class de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoaderInstance
 
toString() - Method in interface de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoaderInterface
 
toString() - Method in class info.clearthought.layout.TableLayout
Converts this TableLayout to a string.
toString() - Method in class info.clearthought.layout.TableLayoutConstraints
Gets a string representation of this TableLayoutConstraints.
toString() - Method in enum org.AlignmentSetting
 
toString() - Method in class org.graffiti.attributes.AbstractAttribute
Returns the ID of this attribute.
toString() - Method in class org.graffiti.editor.GraffitiInternalFrame
 
toString() - Method in enum org.graffiti.editor.HashType
 
toString() - Method in class org.graffiti.graph.AdjListEdge
 
toString() - Method in class org.graffiti.graph.AdjListGraph
 
toString() - Method in class org.graffiti.graph.AdjListNode
 
toString() - Method in class org.graffiti.help.HelpContext
Returns a human readable string of this help context.
toString() - Method in class org.graffiti.managers.DefaultIOManager
Returns a string representation of the io manager.
toString() - Method in class org.graffiti.managers.pluginmgr.PluginDependency
Returns a human readable string of this object.
toString() - Method in class org.graffiti.managers.pluginmgr.PluginDescription
Returns a human readable string representation of this object.
toString() - Method in enum org.graffiti.plugin.algorithm.Category
 
toString() - Method in class org.graffiti.plugin.io.resources.IOurl
 
toString() - Method in class org.graffiti.plugin.parameter.AbstractSingleParameter
 
toString() - Method in class org.graffiti.plugins.inspectors.defaults.BooledAttribute
Returns the ID of the contained attribute.
toString() - Method in enum org.graffiti.plugins.views.defaults.DockingAttributeEditor.DockingModes
 
toString() - Method in enum org.graffiti.plugins.views.defaults.ThicknessAttributeEditor.ArrowHeadModes
 
toString() - Method in class org.graffiti.selection.Selection
Gets a string describing the selection.
toString() - Method in class org.graffiti.session.Session
 
toString() - Method in class org.graffiti.util.Pair
 
toString() - Method in class org.jfree.chart.axis.AxisLocation
Returns a string representing the object.
toString() - Method in class org.jfree.chart.axis.AxisSpace
Returns a string representing the object (for debugging purposes).
toString() - Method in class org.jfree.chart.axis.CategoryAnchor
Returns a string representing the object.
toString() - Method in class org.jfree.chart.axis.CategoryLabelWidthType
Returns a string representing the object.
toString() - Method in class org.jfree.chart.axis.DateTickMarkPosition
Returns a string representing the object.
toString() - Method in class org.jfree.chart.axis.Tick
Returns a string representation of the tick.
toString() - Method in class org.jfree.chart.entity.CategoryItemEntity
Returns a string representing this object (useful for debugging purposes).
toString() - Method in class org.jfree.chart.entity.PieSectionEntity
Returns a string representing the entity.
toString() - Method in class org.jfree.chart.labels.ItemLabelAnchor
Returns a string representing the object.
toString() - Method in class org.jfree.chart.LegendRenderingOrder
Returns a string representing the object.
toString() - Method in class org.jfree.chart.plot.DatasetRenderingOrder
Returns a string representing the object.
toString() - Method in class org.jfree.chart.plot.DialShape
Returns a string representing the object.
toString() - Method in class org.jfree.chart.plot.PieLabelDistributor
Returns a string containing a description of the object for debugging purposes.
toString() - Method in class org.jfree.chart.plot.PieLabelRecord
Returns a string describing the object.
toString() - Method in class org.jfree.chart.plot.PlotOrientation
Returns a string representing the object.
toString() - Method in class org.jfree.chart.renderer.AreaRendererEndType
Returns a string representing the object.
toString() - Method in class org.jfree.chart.renderer.Outlier
Returns a textual representation of the outlier.
toString() - Method in class org.jfree.chart.renderer.RangeType
Returns a string representing the object.
toString() - Method in class org.jfree.data.DateRange
Returns a string representing the date range (useful for debugging).
toString() - Method in class org.jfree.data.KeyedValueComparatorType
Returns a string representing the object.
toString() - Method in class org.jfree.data.Range
Returns a string representation of this Range.
toString() - Method in class org.jfree.data.statistics.HistogramType
Returns a string representing the object.
toString() - Method in class org.jfree.data.time.Day
Returns a string representing the day.
toString() - Method in class org.jfree.data.time.Month
Returns a string representing the month (e.g.
toString() - Method in class org.jfree.data.time.Quarter
Returns a string representing the quarter (e.g.
toString() - Method in class org.jfree.data.time.RegularTimePeriod
Returns a string representation of the time period.
toString() - Method in class org.jfree.data.time.TimePeriodAnchor
Returns a string representing the object.
toString() - Method in class org.jfree.data.time.Week
Returns a string representing the week (e.g.
toString() - Method in class org.jfree.data.time.Year
Returns a string representing the year..
toString() - Method in enum org.LabelFrameSetting
 
toString() - Method in class org.ObjectRef
 
toString() - Method in enum org.Release
 
toString() - Method in class org.vanted.animation.data.Point2DTimePoint
 
toString() - Method in class org.vanted.animation.data.TimePoint
 
toString() - Method in class org.vanted.animation.interpolators.CosineInterpolator
 
toString() - Method in class org.vanted.animation.interpolators.CubicInterpolator
 
toString() - Method in class org.vanted.animation.interpolators.LinearInterpolator
 
toString() - Method in class org.vanted.animation.interpolators.SigmoidInterpolator
 
toString() - Method in class org.vanted.animation.interpolators.SineInterpolator
 
toString() - Method in class org.vanted.animation.interpolators.SmoothCubicInterpolator
 
toString() - Method in class org.vanted.LookAndFeelNameAndClass
 
toString() - Method in class org.vanted.plugins.layout.multilevelframework.LayoutAlgorithmWrapper
 
toString() - Method in enum org.vanted.plugins.layout.stressminimization.StressMinParamModel.InitialLayoutOption
 
toString() - Method in enum org.vanted.plugins.layout.stressminimization.StressMinParamModel.MethodOption
 
toString() - Method in class org.Vector2d
 
toString() - Method in class org.Vector2df
 
toString() - Method in class org.Vector3d
 
toString() - Method in class placement.Block
 
toString() - Method in class placement.Constraint
 
toString() - Method in class placement.MaxPairingHeap
 
toString() - Method in class placement.ScanListPriorityQueue
 
toString() - Method in class placement.SlowPriorityQueue
 
toString() - Method in class placement.Variable
 
toString() - Method in class qmwi.kseg.som.CSV_SOM_dataEntry
 
toString() - Method in class scenario.Scenario
 
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttribute
 
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartAttribute
 
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttribute
 
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundAttribute
 
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundPositionAttribute
 
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_color.LabelColorAttribute
 
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings.LabelFontAttribute
 
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style.LabelStyleAttribute
 
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttribute
 
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggGroupPartAttribute
 
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggIdAttribute
 
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionIdAttribute
 
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionTypeAttribute
 
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSrcTgtAttribute
 
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSubTypeAttribute
 
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationTypeAttribute
 
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggTypeAttribute
 
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment.LabelAlignmentAttribute
 
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttribute
 
toString(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttribute
 
toString(int) - Method in class org.graffiti.attributes.AbstractAttribute
 
toString(int) - Method in class org.graffiti.attributes.AbstractCollectionAttribute
 
toString(int) - Method in interface org.graffiti.attributes.Attribute
Returns a string representation prepended by n spaces of this attribute.
toString(int) - Method in class org.graffiti.attributes.StringAttribute
 
toString(StringBuilder, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader
 
toString(StringBuilder, int) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface
 
toStringWithDetails(boolean, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Reaction
 
toStringWithErrorThrowing() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment
 
toStringWithErrorThrowing() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface
 
toStringWithKeggIDs() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation
 
toStringWithKeggNames() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation
 
toStringWithShortDesc(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation
 
toTimelineValue(long) - Method in class org.jfree.chart.axis.SegmentedTimeline
Translates a value relative to the domain value (all Dates) into a value relative to the segmented timeline.
toTimelineValue(long) - Method in interface org.jfree.chart.axis.Timeline
Translates a millisecond (as defined by java.util.Date) into an index along this timeline.
toTimelineValue(Date) - Method in class org.jfree.chart.axis.SegmentedTimeline
Translates a date into a value relative to the segmented timeline.
toTimelineValue(Date) - Method in interface org.jfree.chart.axis.Timeline
Translates a date into a value on this timeline.
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttribute
 
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartAttribute
 
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttribute
 
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundAttribute
 
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundPositionAttribute
 
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_color.LabelColorAttribute
 
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings.LabelFontAttribute
 
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style.LabelStyleAttribute
 
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttribute
 
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggGroupPartAttribute
 
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggIdAttribute
 
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionIdAttribute
 
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionTypeAttribute
 
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSrcTgtAttribute
 
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSubTypeAttribute
 
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationTypeAttribute
 
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggTypeAttribute
 
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment.LabelAlignmentAttribute
 
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttribute
 
toXMLString() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttribute
 
toXMLString() - Method in class org.graffiti.attributes.AbstractAttribute
 
toXMLString() - Method in class org.graffiti.attributes.AbstractCollectionAttribute
 
toXMLString() - Method in class org.graffiti.attributes.BooleanAttribute
 
toXMLString() - Method in class org.graffiti.attributes.ByteAttribute
 
toXMLString() - Method in class org.graffiti.attributes.DoubleAttribute
 
toXMLString() - Method in class org.graffiti.attributes.FloatAttribute
 
toXMLString() - Method in class org.graffiti.attributes.IntegerAttribute
 
toXMLString() - Method in class org.graffiti.attributes.LinkedHashMapAttribute
 
toXMLString() - Method in class org.graffiti.attributes.LongAttribute
 
toXMLString() - Method in class org.graffiti.attributes.ShortAttribute
 
toXMLString() - Method in class org.graffiti.attributes.StringAttribute
 
toXMLString() - Method in interface org.graffiti.plugin.Displayable
Returns a well-formed XML string representing the Displayable.
toXMLString() - Method in class org.graffiti.plugin.parameter.AbstractLimitableParameter
 
toXMLString() - Method in class org.graffiti.plugin.parameter.AbstractSingleParameter
 
toXMLString() - Method in class org.graffiti.plugin.parameter.BooleanParameter
 
toXMLString() - Method in class org.graffiti.plugin.parameter.ColorParameter
 
toXMLString() - Method in class org.graffiti.plugin.parameter.StringParameter
 
trainOrUseSOM(boolean, int, String[], int, BackgroundTaskStatusProviderSupportingExternalCall, int) - Method in class qmwi.kseg.som.DataSet
Trains the SOM or uses the SOM in order to divide the input into groups
TransactionAdapter - Class in org.graffiti.event
Adapter for the TransactionListener interface, providing default empty implementation.
TransactionAdapter() - Constructor for class org.graffiti.event.TransactionAdapter
 
TransactionEvent - Class in org.graffiti.event
Contains a transaction event.
TransactionEvent(Object) - Constructor for class org.graffiti.event.TransactionEvent
Constructs a transaction event object with the specified source component.
TransactionEvent(Object, TransactionHashMap) - Constructor for class org.graffiti.event.TransactionEvent
Constructs a transaction event object with the specified source component.
transactionFinished(Object) - Method in class org.graffiti.event.ListenerManager
Called when a transaction has finished.
transactionFinished(Object, boolean) - Method in class org.graffiti.event.ListenerManager
 
transactionFinished(Object, boolean, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.event.ListenerManager
 
transactionFinished(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkTab
 
transactionFinished(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics
 
transactionFinished(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPatternLayout
 
transactionFinished(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPluginControl
 
transactionFinished(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabVisualisationControl
Deprecated.
 
transactionFinished(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.WorkflowHelper
Deprecated.
 
transactionFinished(TransactionEvent) - Method in class org.graffiti.event.AbstractAttributeListener
Called after a transaction has been finished.
transactionFinished(TransactionEvent) - Method in class org.graffiti.event.AbstractEdgeListener
Called after a transaction has been finished.
transactionFinished(TransactionEvent) - Method in class org.graffiti.event.AbstractGraphListener
Called after a transaction has been finished.
transactionFinished(TransactionEvent) - Method in class org.graffiti.event.AbstractNodeListener
Called after a transaction has been finished.
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
 
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKGraffitiView
 
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
 
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation.NavigationComponentView
 
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.editor.StatusBar
 
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.event.AbstractAttributeListener
 
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.event.AttributeAdapter
 
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.event.EdgeAdapter
 
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.event.GraphAdapter
 
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.event.NodeAdapter
 
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.event.TransactionAdapter
 
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in interface org.graffiti.event.TransactionListener
Called when a transaction has stopped.
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugin.editcomponent.GraphComponentEditComponent
Called if a transaction got finished.
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
 
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter
Called if a transaction got finished.
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugin.inspector.SubtabHostTab
 
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugin.view.AbstractView
Called when a transaction has stopped.
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugins.inspectors.defaults.AbstractTab
 
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugins.views.defaults.GraffitiView
Called when a transaction has stopped.
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugins.views.matrix.MatrixModel
 
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.plugins.views.matrix.MatrixView
 
transactionFinished(TransactionEvent, BackgroundTaskStatusProviderSupportingExternalCall) - Method in class org.graffiti.session.GraphConstraintChecker
Called when a transaction has stopped.
TransactionHashMap - Class in org.graffiti.event
 
TransactionHashMap() - Constructor for class org.graffiti.event.TransactionHashMap
 
TransactionListener - Interface in org.graffiti.event
Interface, that contains methods which are called when transactions are started or finished.
transactionStarted(Object) - Method in class org.graffiti.event.ListenerManager
Called when a transaction has started.
transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
 
transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
 
transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkTab
 
transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.TabStatistics
 
transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPatternLayout
 
transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPluginControl
 
transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabVisualisationControl
Deprecated.
 
transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.WorkflowHelper
Deprecated.
 
transactionStarted(TransactionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation.NavigationComponentView
 
transactionStarted(TransactionEvent) - Method in class org.graffiti.editor.StatusBar
 
transactionStarted(TransactionEvent) - Method in class org.graffiti.event.AbstractAttributeListener
Called after a transaction has been started.
transactionStarted(TransactionEvent) - Method in class org.graffiti.event.AbstractEdgeListener
Called after a transaction has been started.
transactionStarted(TransactionEvent) - Method in class org.graffiti.event.AbstractGraphListener
Called before a transaction has been started.
transactionStarted(TransactionEvent) - Method in class org.graffiti.event.AbstractNodeListener
Called after a transaction has been started.
transactionStarted(TransactionEvent) - Method in class org.graffiti.event.AttributeAdapter
 
transactionStarted(TransactionEvent) - Method in class org.graffiti.event.EdgeAdapter
 
transactionStarted(TransactionEvent) - Method in class org.graffiti.event.GraphAdapter
 
transactionStarted(TransactionEvent) - Method in class org.graffiti.event.NodeAdapter
 
transactionStarted(TransactionEvent) - Method in class org.graffiti.event.TransactionAdapter
 
transactionStarted(TransactionEvent) - Method in interface org.graffiti.event.TransactionListener
Called when a transaction has started.
transactionStarted(TransactionEvent) - Method in class org.graffiti.plugin.editcomponent.GraphComponentEditComponent
Called if a transaction got started.
transactionStarted(TransactionEvent) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
 
transactionStarted(TransactionEvent) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter
Called if a transaction got started.
transactionStarted(TransactionEvent) - Method in class org.graffiti.plugin.inspector.SubtabHostTab
 
transactionStarted(TransactionEvent) - Method in class org.graffiti.plugin.view.AbstractView
Called when a transaction has started.
transactionStarted(TransactionEvent) - Method in class org.graffiti.plugins.inspectors.defaults.AbstractTab
 
transactionStarted(TransactionEvent) - Method in class org.graffiti.plugins.views.defaults.GraffitiView
 
transactionStarted(TransactionEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixModel
 
transactionStarted(TransactionEvent) - Method in class org.graffiti.plugins.views.matrix.MatrixView
 
transactionStarted(TransactionEvent) - Method in class org.graffiti.session.GraphConstraintChecker
Called when a transaction has started.
TransferableObject - Class in net.iharder.dnd
At last an easy way to encapsulate your custom objects for dragging and dropping in your Java programs! When you need to create a Transferable object, use this class to wrap your object.
TransferableObject(Class<?>, TransferableObject.Fetcher) - Constructor for class net.iharder.dnd.TransferableObject
Creates a new TransferableObject that will return the object that is returned by fetcher.
TransferableObject(Object) - Constructor for class net.iharder.dnd.TransferableObject
Creates a new TransferableObject that wraps data.
TransferableObject(TransferableObject.Fetcher) - Constructor for class net.iharder.dnd.TransferableObject
Creates a new TransferableObject that will return the object that is returned by fetcher.
TransferableObject.Fetcher - Interface in net.iharder.dnd
Instead of passing your data directly to the TransferableObject constructor, you may want to know exactly when your data was received in case you need to remove it from its source (or do anyting else to it).
transformsDataList() - Method in enum de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.AttributeCalculation
 
TransitionShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
 
TransitionShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TransitionShape
 
translateDateToJava2D(Date, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.DateAxis
Deprecated.
Use dataToJava2D() instead.
translateJava2DToScreen(Point2D) - Method in class org.jfree.chart.ChartPanel
Translates a Java2D point on the chart to a screen location.
translateJava2DtoValue(float, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.ValueAxis
Deprecated.
Use translateJava2DToValue(double, ...).
translateJava2DToValue(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.DateAxis
Deprecated.
Use java2DToValue instead.
translateJava2DToValue(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.LogarithmicAxis
Deprecated.
Use java2DToValue().
translateJava2DToValue(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.NumberAxis
Deprecated.
Use java2DToValue() instead.
translateJava2DToValue(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.ValueAxis
Deprecated.
Use java2DToValue instead.
translateScreenToJava2D(Point) - Method in class org.jfree.chart.ChartPanel
Translates a screen location to a Java2D point.
translateValueThetaRadiusToJava2D(double, double, Rectangle2D) - Method in class org.jfree.chart.plot.PolarPlot
Translates a (theta, radius) pair into Java2D coordinates.
translateValueToJava2D(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.DateAxis
Deprecated.
Use valueToJava2D instead.
translateValueToJava2D(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.LogarithmicAxis
Deprecated.
Use valueToJava2D().
translateValueToJava2D(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.NumberAxis
Deprecated.
Use valueToJava2D() instead.
translateValueToJava2D(double, Rectangle2D, RectangleEdge) - Method in class org.jfree.chart.axis.ValueAxis
Deprecated.
Use valueToJava2D instead.
TRANSPATH_ACCESS - org.FeatureSet
 
TranspathEntity - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
 
TranspathEntity() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathEntity
 
TranspathEntityType - Interface in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
 
TranspathGene - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
 
TranspathGene() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathGene
 
TranspathMolecule - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
 
TranspathMolecule() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathMolecule
 
TranspathPathway - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
 
TranspathPathway() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathPathway
 
TranspathPathwayLoader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.commands
 
TranspathPathwayLoader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.commands.TranspathPathwayLoader
 
TranspathReaction - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
 
TranspathReaction() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReaction
 
TranspathReference - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
 
TranspathReference() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReference
 
TranspathService - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
 
TranspathService() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathService
 
TranspathXMLparser - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath
 
TranspathXMLparser(Map<String, TranspathEntityType>, Class<?>, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathXMLparser
 
treatment - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow
 
TREATMENT - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition.ConditionInfo
 
TreeAttributSearcher - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility
enumerates the attributes of the given node / attributable in a path --> attribute map
TreeAttributSearcher() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.TreeAttributSearcher
 
TreeContainer - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree
Contains additional informations about each tree in the forest.
TreeContainer(HashMap<Integer, Double>, HashMap<Node, Integer>, HashMap<Integer, Double>, HashMap<Node, Integer>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.TreeContainer
 
TreeContainer(HashMap<Node, Integer>, HashMap<Integer, Double>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.TreeContainer
 
TreeContainer(HashMap<Node, Integer>, HashMap<Integer, Double>, HashSet<Edge>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.TreeContainer
 
TreeContainer(LinkedList<?>, HashMap<Integer, Double>, HashMap<Node, Integer>, HashMap<Integer, Double>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.TreeContainer
 
TreeTableCellEditor() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.JTreeTable.TreeTableCellEditor
 
TreeTableCellRenderer(TreeModel) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.JTreeTable.TreeTableCellRenderer
 
TreeTableModel - Interface in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model
TreeTableModel is the model used by a JTreeTable.
TreeTableModelAdapter - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model
This is a wrapper class takes a TreeTableModel and implements the table model interface.
TreeTableModelAdapter(TreeTableModel, JTree) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.TreeTableModelAdapter
 
TRIGGER_FUNCTION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
 
triggerArrow - Static variable in class org.graffiti.plugins.editcomponents.defaults.EdgeArrowShapeEditComponent
 
TriggerArrowShape - Class in org.graffiti.plugins.views.defaults
DOCUMENT ME!
TriggerArrowShape() - Constructor for class org.graffiti.plugins.views.defaults.TriggerArrowShape
Constructs a new arrow.
TriggerArrowShape(float) - Constructor for class org.graffiti.plugins.views.defaults.TriggerArrowShape
 
trimKnownPrefixes(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeEntry
 
trimToSize() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment
 
trimToSize() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface
 
TristateCheckBox - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui
Maintenance tip - There were some tricks to getting this code working: 1.
TristateCheckBox() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.TristateCheckBox
 
TristateCheckBox(String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.TristateCheckBox
 
TristateCheckBox(String, TristateCheckBox.State) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.TristateCheckBox
 
TristateCheckBox(String, Icon, TristateCheckBox.State) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.TristateCheckBox
 
TristateCheckBox.State - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui
This is a type-safe enumerated type
TRUNCATE - Static variable in class org.jfree.chart.renderer.AreaRendererEndType
The area is truncated at the first or last value.
TruncProteinShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
 
TruncProteinShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.TruncProteinShape
 
tryGetDBEISloginUrlParameters() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.PasswordDialog
 
tryMakingNewInstance(T) - Static method in enum org.vanted.plugins.layout.multilevelframework.MlfHelper
Create new instances of the layouters to avoid interfering with the ones that VANTED holds.
TtestInfo - Enum in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper
 
ttestIsH1(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper
 
ttestIsReference - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint
 
tTestIsReference(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper
 
ttestIsSignificantDifferent - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint
 
tTestSetSampleAsReference(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper
 
tTestSetSampleSignificane(Node, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper
 
Tvertp(double, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.StatisticTable
 
Tvertz(double, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.StatisticTable
 
TWO - org.vanted.animation.NumberOfLoops
 
TYPE - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathMolecule
 
TYPE - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathPathway
 
TYPE - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReaction
 
TYPE_ATTRIBUTE_LITERAL - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLConstants
 
TypedAttributeService - Class in org.graffiti.plugins.ios.importers
 
TypedAttributeService() - Constructor for class org.graffiti.plugins.ios.importers.TypedAttributeService
 
tzweiseitig(int, double) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.StatisticTable
 
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _ 
All Classes|All Packages