B-Index (Vanted 2.8.3 API)

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B

b - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.LineModeSetting
b - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.ResultPair
b - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.kgml.NodePair
BackgroundAlgorithm - Class in org.vanted.plugins.layout.stressminimization: Algorithm which runs in the background and able to notify other classes about state of the algorithm or the layout change of the graph.
BackgroundAlgorithm() - Constructor for class org.vanted.plugins.layout.stressminimization.BackgroundAlgorithm
BackgroundExecutionAlgorithm - Class in org.vanted.plugins.layout.stressminimization: This class handles the execution of a given BackgroundAlgorithm in the background, i.e.
BackgroundExecutionAlgorithm(BackgroundAlgorithm) - Constructor for class org.vanted.plugins.layout.stressminimization.BackgroundExecutionAlgorithm
BackgroundStatus - Enum in org.vanted.plugins.layout.stressminimization: state values of the background algorithm
BackgroundTaskConsoleLogger - Class in de.ipk_gatersleben.ag_nw.graffiti.services
BackgroundTaskConsoleLogger(String, String, boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.services.BackgroundTaskConsoleLogger
BackgroundTaskGUIprovider - Interface in de.ipk_gatersleben.ag_nw.graffiti.services.task
BackgroundTaskHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.services.task: Used to easily let a long running task running in background, with the possibility to provide a feedback of the progress,
BackgroundTaskHelper(Runnable, BackgroundTaskStatusProvider, String, String, boolean, boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskHelper: Creates a new BackgroundTaskHelper object.
BackgroundTaskHelper(Runnable, BackgroundTaskStatusProvider, String, String, boolean, boolean, int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskHelper
BackgroundTaskPanelEntry - Class in de.ipk_gatersleben.ag_nw.graffiti.services.task
BackgroundTaskPanelEntry(boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskPanelEntry
BackgroundTaskStatusProvider - Interface in de.ipk_gatersleben.ag_nw.graffiti.services.task
BackgroundTaskStatusProvider - Interface in org
BackgroundTaskStatusProviderSupportingExternalCall - Interface in org
BackgroundTaskStatusProviderSupportingExternalCallImpl - Class in de.ipk_gatersleben.ag_nw.graffiti.services.task
BackgroundTaskStatusProviderSupportingExternalCallImpl(String, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskStatusProviderSupportingExternalCallImpl
BackgroundTaskWindow - Class in de.ipk_gatersleben.ag_nw.graffiti.services.task
BackgroundTaskWindow(boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskWindow
backtrack() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.UllmannSubraphIsomAdjMatrixState
backwardT(double, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.StatisticTable
BAR - de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.GraffitiCharts
BAR_FLAT - de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.GraffitiCharts
BAR_OUTLINE_WIDTH_THRESHOLD - Static variable in class org.jfree.chart.renderer.BarRenderer: Constant that controls the minimum width before a bar has an outline drawn.
BarabasiAlbertGraphGenerator - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation: Needs implementation
BarabasiAlbertGraphGenerator() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.BarabasiAlbertGraphGenerator
BarChart3DDemo1 - Class in org.jfree.chart.demo: A simple demonstration application showing how to create a vertical 3D bar chart using data from a CategoryDataset.
BarChart3DDemo1(String) - Constructor for class org.jfree.chart.demo.BarChart3DDemo1: Creates a new demo.
BarChart3DDemo2 - Class in org.jfree.chart.demo: A simple demonstration application showing how to create a horizontal 3D bar chart using data from a CategoryDataset.
BarChart3DDemo2(String) - Constructor for class org.jfree.chart.demo.BarChart3DDemo2: Creates a new demo.
BarChart3DDemo3 - Class in org.jfree.chart.demo: This demonstration shows a 3D bar chart with item labels displayed.
BarChart3DDemo3(String) - Constructor for class org.jfree.chart.demo.BarChart3DDemo3: Creates a new demo.
BarChartDemo - Class in org.jfree.chart.demo: A simple demonstration application showing how to create a bar chart.
BarChartDemo(String) - Constructor for class org.jfree.chart.demo.BarChartDemo: Creates a new demo instance.
BarChartDemo2 - Class in org.jfree.chart.demo: A simple demonstration application showing how to create a horizontal bar chart.
BarChartDemo2(String) - Constructor for class org.jfree.chart.demo.BarChartDemo2: Creates a new demo instance.
BarChartDemo3 - Class in org.jfree.chart.demo: A bar chart that uses a custom renderer to display different colors within a series.
BarChartDemo3(String) - Constructor for class org.jfree.chart.demo.BarChartDemo3: Creates a new demo.
BarChartDemo4 - Class in org.jfree.chart.demo: A bar chart with only two bars - here the 'maxBarWidth' attribute in the renderer prevents the bars from getting too wide.
BarChartDemo4(String) - Constructor for class org.jfree.chart.demo.BarChartDemo4: Creates a new demo instance.
BarChartDemo5 - Class in org.jfree.chart.demo: A simple demonstration application showing how to create a horizontal bar chart.
BarChartDemo5(String) - Constructor for class org.jfree.chart.demo.BarChartDemo5: Creates a new demo instance.
BarChartDemo6 - Class in org.jfree.chart.demo: Another horizontal bar chart demo.
BarChartDemo6(String) - Constructor for class org.jfree.chart.demo.BarChartDemo6: Creates a new demo.
BarChartDemo7 - Class in org.jfree.chart.demo: A simple demonstration application showing how to create a bar chart with a custom item label generator.
BarChartDemo7(String) - Constructor for class org.jfree.chart.demo.BarChartDemo7: Creates a new demo instance.
BarChartDemo8 - Class in org.jfree.chart.demo: A simple demonstration application showing how to create a bar chart with a custom item label generator.
BarChartDemo8(String) - Constructor for class org.jfree.chart.demo.BarChartDemo8: Creates a new demo instance.
BarRenderer - Class in org.jfree.chart.renderer: A CategoryItemRenderer that draws individual data items as bars.
BarRenderer() - Constructor for class org.jfree.chart.renderer.BarRenderer: Creates a new bar renderer with default settings.
BarRenderer3D - Class in org.jfree.chart.renderer: A renderer for bars with a 3D effect, for use with the CategoryPlot class.
BarRenderer3D() - Constructor for class org.jfree.chart.renderer.BarRenderer3D: Default constructor, creates a renderer with a ten pixel '3D effect'.
BarRenderer3D(double, double) - Constructor for class org.jfree.chart.renderer.BarRenderer3D: Constructs a new renderer with the specified '3D effect'.
BASE_RESOURCE_CLASS - Static variable in class org.jfree.chart.demo.JFreeChartDemoBase: Base class name for localised resources.
Base64 - Class in org.graffiti.plugins.ios.exporters.graphml: Encodes and decodes to and from Base64 notation.
Base64 - Class in org.graffiti.plugins.ios.importers.graphml.parser: Encodes and decodes to and from Base64 notation.
Base64.InputStream - Class in org.graffiti.plugins.ios.exporters.graphml: A Base64.InputStream will read data from another InputStream, given in the constructor, and encode/decode to/from Base64 notation on the fly.
Base64.InputStream - Class in org.graffiti.plugins.ios.importers.graphml.parser: A Base64.InputStream will read data from another InputStream, given in the constructor, and encode/decode to/from Base64 notation on the fly.
Base64.OutputStream - Class in org.graffiti.plugins.ios.exporters.graphml: A Base64.OutputStream will write data to another OutputStream, given in the constructor, and encode/decode to/from Base64 notation on the fly.
Base64.OutputStream - Class in org.graffiti.plugins.ios.importers.graphml.parser: A Base64.OutputStream will write data to another OutputStream, given in the constructor, and encode/decode to/from Base64 notation on the fly.
BasicScaler - Class in org.vanted.scaling.scalers: This scales the following: all fonts, all integers specified in BasicScaler.LOWER_SUFFIXES_INTEGERS, all icons and all insets.
BasicScaler(float) - Constructor for class org.vanted.scaling.scalers.BasicScaler
BeanShellDesktopAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.scripting: Provides a Bean Shell Desktop for the execution of Bean Shell Scripts.
BeanShellDesktopAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.scripting.BeanShellDesktopAlgorithm: Creates a new BeanShellDesktopAlgorithm object.
BeanShellDesktopPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.scripting: Plugin Adapter for the BeanShell Plugin.
BeanShellDesktopPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.scripting.BeanShellDesktopPlugin: Creates a new BeanShellDesktopPlugin object.
before(SegmentedTimeline.Segment) - Method in class org.jfree.chart.axis.SegmentedTimeline.Segment: Returns true if this segment is wholly before another segment.
BELOW - org.AlignmentSetting
BELOW - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants: Constant used to specify the position of a label according to a node.
BELOWLEFT - org.AlignmentSetting
BELOWLEFT - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants: Constant used to specify the position of a label according to a node.
BELOWRIGHT - org.AlignmentSetting
BELOWRIGHT - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants: Constant used to specify the position of a label according to a node.
benchmarkMode - Variable in class org.vanted.plugins.layout.multilevelframework.MultilevelFrameworkLayout: Set this to true to make execute() block until it is finished and use the specified mergers instead of the ones selected through the GUI.
BENDS - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.AttributeConstants: Dynamical defined edge bend attribute.
BENDS - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
BENDS_PATH - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants: Path to bends attribute
BendsLaunchGUI - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands: Deprecated.
BendsLaunchGUI() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BendsLaunchGUI: Deprecated.
beta - Variable in class qmwi.kseg.som.Map
BezierInterpolator - Class in org.vanted.animation.interpolators: Interpolates the data values as if it were drawing a Bezier Curve.
Note: Bezier interpolation will cause dramatic performance hits at large data point sizes.
BezierInterpolator() - Constructor for class org.vanted.animation.interpolators.BezierInterpolator
BGIMAGE - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
binding_association - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.SubtypeName
BioMeanAndStandardDeviation - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent
BioMeanAndStandardDeviation - Class in org
BioMeanAndStandardDeviation(Number, Number, boolean, boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.BioMeanAndStandardDeviation: Creates a new data point.
BioMeanAndStandardDeviation(Number, Number, boolean, boolean) - Constructor for class org.BioMeanAndStandardDeviation: Creates a new data point.
BIOMODELID - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter.QueryType
BiomodelsAccessAdapter - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels: Access adapter for the Biomodels Webservice client.
BiomodelsAccessAdapter() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter: Default constructor.
BiomodelsAccessAdapter.BiomodelsLoaderCallback - Interface in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels
BiomodelsAccessAdapter.QueryAdvanced - Enum in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels
BiomodelsAccessAdapter.QueryType - Enum in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels: Types of models to be queried.
BiomodelsDBAccessPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels
BiomodelsDBAccessPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsDBAccessPlugin
BiomodelsPanel - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels: This is the Biomodels tab panel.
BiomodelsPanel() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsPanel: Populates the Biomodels tab panel.
BioPAX_OWL_Reader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax: Imports Level 2 and 3 OWL Files to Vanted Graph.
BioPAX_OWL_Reader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.BioPAX_OWL_Reader
BioPAX_OWL_ReaderPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax
BioPAX_OWL_ReaderPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.BioPAX_OWL_ReaderPlugin: constructor initializing InputSerializer
BioPAX_OWL_Writer - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.biopax: Takes a graph with a biochemical pathway, filters all attributes that could possibly belong to a BioPax-File and creates and OWL-File out of it
BioPAX_OWL_Writer() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.biopax.BioPAX_OWL_Writer
BioPAX_OWL_WriterPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.biopax
BioPAX_OWL_WriterPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.biopax.BioPAX_OWL_WriterPlugin: constructor initializing OutputSerializer
BioStatisticalCategoryDataset - Class in org
BioStatisticalCategoryDataset(float) - Constructor for class org.BioStatisticalCategoryDataset
bitSpaltenNamen - Variable in class qmwi.kseg.som.DataSet
Block - Class in placement: A block is a grouping of variables placed optimally with respect to a set of active constraints
blockUpdates - Static variable in class org.graffiti.editor.MainFrame
BLUE - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
blurImage(BufferedImage, float) - Static method in class org.graffiti.editor.GravistoService
BOOLEAN - Static variable in class org.graffiti.plugins.ios.importers.gml.sym
BooleanAttribute - Class in org.graffiti.attributes: Contains a boolean value.
BooleanAttribute() - Constructor for class org.graffiti.attributes.BooleanAttribute
BooleanAttribute(String) - Constructor for class org.graffiti.attributes.BooleanAttribute: Constructs a new instance of a BooleanAttribute.
BooleanAttribute(String, boolean) - Constructor for class org.graffiti.attributes.BooleanAttribute: Constructs a new instance of a BooleanAttribute with the given value.
BooleanAttribute(String, Boolean) - Constructor for class org.graffiti.attributes.BooleanAttribute: Constructs a new instance of a BooleanAttribute with the given value.
BooleanAttribute(String, String) - Constructor for class org.graffiti.attributes.BooleanAttribute
BooleanEditComponent - Class in org.graffiti.plugins.editcomponents.defaults: Represents a component, which can edit a boolean value.
BooleanEditComponent(Displayable) - Constructor for class org.graffiti.plugins.editcomponents.defaults.BooleanEditComponent: Constructs a new boolean edit component, referencing the given displayable.
BooleanParameter - Class in org.graffiti.plugin.parameter: Parameter that contains a Boolean value.
BooleanParameter(boolean, String, String) - Constructor for class org.graffiti.plugin.parameter.BooleanParameter: Constructs a new boolean parameter.
BooleanParameter(Boolean, String, String) - Constructor for class org.graffiti.plugin.parameter.BooleanParameter: Constructs a new boolean parameter.
BooleanTimePoint - Class in org.vanted.animation.data
BooleanTimePoint(double, boolean) - Constructor for class org.vanted.animation.data.BooleanTimePoint
booleanValue() - Method in class org.graffiti.plugins.ios.importers.gml.MyBoolean
BooledAttribute - Class in org.graffiti.plugins.inspectors.defaults: Class that encapsulates an Attribute and a boolean value.
BooledAttribute(Attribute, boolean) - Constructor for class org.graffiti.plugins.inspectors.defaults.BooledAttribute: Constructor for BooledAttribute.
BoolPair - Class in org.graffiti.util: Encapsulates two boolean values.
BoolPair(boolean, boolean) - Constructor for class org.graffiti.util.BoolPair: Creates a new BoolPair object.
BORDER_BOTTOM_CENTER - org.AlignmentSetting
BORDER_BOTTOM_CENTER - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
BORDER_BOTTOM_LEFT - org.AlignmentSetting
BORDER_BOTTOM_LEFT - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
BORDER_BOTTOM_RIGHT - org.AlignmentSetting
BORDER_BOTTOM_RIGHT - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
BORDER_LEFT_BOTTOM - org.AlignmentSetting
BORDER_LEFT_BOTTOM - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
BORDER_LEFT_CENTER - org.AlignmentSetting
BORDER_LEFT_CENTER - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
BORDER_LEFT_TOP - org.AlignmentSetting
BORDER_LEFT_TOP - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
BORDER_RIGHT_BOTTOM - org.AlignmentSetting
BORDER_RIGHT_BOTTOM - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
BORDER_RIGHT_CENTER - org.AlignmentSetting
BORDER_RIGHT_CENTER - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
BORDER_RIGHT_TOP - org.AlignmentSetting
BORDER_RIGHT_TOP - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
BORDER_TOP_CENTER - org.AlignmentSetting
BORDER_TOP_CENTER - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
BORDER_TOP_LEFT - org.AlignmentSetting
BORDER_TOP_LEFT - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
BORDER_TOP_RIGHT - org.AlignmentSetting
BORDER_TOP_RIGHT - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
borderForce - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.springembedder_1.SpringEmbedderAlgorithm: Rand-Absto�ung verwenden, ja/nein
borderForce - Variable in class org.graffiti.plugin.algorithm.ThreadSafeOptions: Rand-Abstoßung verwenden, ja/nein
borderHor - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ChartOptions
borderWidth - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.springembedder_1.SpringEmbedderAlgorithm: Rand-Absto�ung links und oben
borderWidth - Variable in class org.graffiti.plugin.algorithm.ThreadSafeOptions: Rand-Abstoßung links und oben
BOTTOM - org.graffiti.plugins.attributecomponents.simplelabel.Quadrant
BOTTOM - org.graffiti.plugins.views.defaults.Line
BOTTOM - Static variable in class info.clearthought.layout.SingleFiledLayout: Bottom justify components
BOTTOM - Static variable in interface info.clearthought.layout.TableLayoutConstants: Indicates that the component is bottom justified in its cell
BOTTOM - Static variable in class org.jfree.chart.renderer.LineAndShapeRenderer: Constant indicating that labels are to be shown below data points
BOTTOM - Static variable in class org.jfree.chart.title.Title: Useful constant for the title position (also used for vertical alignment).
BOTTOM_LEFT - org.graffiti.plugins.views.defaults.Corner
BOTTOM_OR_LEFT - Static variable in class org.jfree.chart.axis.AxisLocation: Axis at the bottom or left.
BOTTOM_OR_RIGHT - Static variable in class org.jfree.chart.axis.AxisLocation: Axis at the bottom or right.
BOTTOM_RIGHT - org.graffiti.plugins.views.defaults.Corner
bottomN - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOperation
BOUNDARY_CONDITION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
BoxAndWhiskerCalculator - Class in org.jfree.data.statistics: A utility class that calculates the mean, median, quartiles Q1 and Q3, plus a list of outlier values...all from an arbitrary list of Number objects.
BoxAndWhiskerCalculator() - Constructor for class org.jfree.data.statistics.BoxAndWhiskerCalculator
BoxAndWhiskerCategoryDataset - Interface in org.jfree.data.statistics: A category dataset that defines various medians, outliers and an average value for each item.
BoxAndWhiskerDemo - Class in org.jfree.chart.demo: Demonstration of a box-and-whisker chart using a CategoryPlot.
BoxAndWhiskerDemo(String) - Constructor for class org.jfree.chart.demo.BoxAndWhiskerDemo: Creates a new demo.
BoxAndWhiskerItem - Class in org.jfree.data.statistics: Represents one data item within a box-and-whisker dataset.
BoxAndWhiskerItem(Number, Number, Number, Number, Number, Number, Number, Number, List) - Constructor for class org.jfree.data.statistics.BoxAndWhiskerItem: Creates a new box-and-whisker item.
BoxAndWhiskerRenderer - Class in org.jfree.chart.renderer: A box-and-whisker renderer.
BoxAndWhiskerRenderer() - Constructor for class org.jfree.chart.renderer.BoxAndWhiskerRenderer: Default constructor.
BoxAndWhiskerToolTipGenerator - Class in org.jfree.chart.labels: An item label generator for plots that use data from a BoxAndWhiskerCategoryDataset.
BoxAndWhiskerToolTipGenerator() - Constructor for class org.jfree.chart.labels.BoxAndWhiskerToolTipGenerator: Creates a default tool tip generator.
BoxAndWhiskerToolTipGenerator(String, NumberFormat) - Constructor for class org.jfree.chart.labels.BoxAndWhiskerToolTipGenerator: Creates a tool tip formatter.
BoxAndWhiskerXYDataset - Interface in org.jfree.data.statistics: An interface that defines data in the form of (x, max, min, average, median) tuples.
BoxAndWhiskerXYToolTipGenerator - Class in org.jfree.chart.labels: An item label generator for plots that use data from a BoxAndWhiskerXYDataset.
BoxAndWhiskerXYToolTipGenerator() - Constructor for class org.jfree.chart.labels.BoxAndWhiskerXYToolTipGenerator: Creates a default item label generator.
BoxAndWhiskerXYToolTipGenerator(String, DateFormat, NumberFormat) - Constructor for class org.jfree.chart.labels.BoxAndWhiskerXYToolTipGenerator: Creates a new item label generator.
BPbiochemicalReaction - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions
BPbiochemicalReaction(Graph, Hashtable<String, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.BPbiochemicalReaction
BPBiochemicalReaction - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions
BPBiochemicalReaction(Graph, Hashtable<Entity, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPBiochemicalReaction
BPcatalysis - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions
BPcatalysis(Graph, Hashtable<String, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.BPcatalysis
BPCatalysis - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions
BPCatalysis(Graph, Hashtable<Entity, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPCatalysis
BPcomplexAssembly - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions
BPcomplexAssembly(Graph, Hashtable<String, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.BPcomplexAssembly
BPComplexAssembly - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions
BPComplexAssembly(Graph, Hashtable<Entity, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPComplexAssembly
BPcontrol - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions
BPcontrol(Graph, Hashtable<String, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.BPcontrol
BPControl - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions
BPControl(Graph, Hashtable<Entity, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPControl
BPconversion - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions
BPconversion(Graph, Hashtable<String, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.BPconversion
BPConversion - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions
BPConversion(Graph, Hashtable<Entity, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPConversion
BPDegradation - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions
BPDegradation(Graph, Hashtable<Entity, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPDegradation
BPGeneticInteraction - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions
BPGeneticInteraction(Graph, Hashtable<Entity, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPGeneticInteraction
BPinteraction - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions: interface for all interactions when a model is read and a graph is created each class has an own read and "write" method for exporting and importing.
BPinteraction(Graph, Hashtable<String, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.BPinteraction
BPInteraction - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions: interface for all interactions when a model is read and a graph is created
BPInteraction(Graph, Hashtable<Entity, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPInteraction
BPmodulation - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions
BPmodulation(Graph, Hashtable<String, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.BPmodulation
BPModulation - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions
BPModulation(Graph, Hashtable<Entity, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPModulation
BPMolecularInteraction - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions
BPMolecularInteraction(Graph, Hashtable<Entity, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPMolecularInteraction
BPphysicalInteraction - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions
BPphysicalInteraction(Graph, Hashtable<String, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.BPphysicalInteraction
BPTemplateReaction - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions
BPTemplateReaction(Graph, Hashtable<Entity, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPTemplateReaction
BPTemplateReactionRegulation - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions
BPTemplateReactionRegulation(Graph, Hashtable<Entity, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPTemplateReactionRegulation
BPtransport - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions
BPtransport(Graph, Hashtable<String, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.BPtransport
BPTransport - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions
BPTransport(Graph, Hashtable<Entity, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPTransport
BPtransportWithBiochemicalReaction - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions
BPtransportWithBiochemicalReaction(Graph, Hashtable<String, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2interactions.BPtransportWithBiochemicalReaction
BPTransportWithBiochemicalReaction - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions
BPTransportWithBiochemicalReaction(Graph, Hashtable<Entity, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3interactions.BPTransportWithBiochemicalReaction
breadthFirstSearch(int, IndexedNodeSet, StatefulAccumulator<?, IndexedComponent>...) - Static method in class org.vanted.indexednodes.IndexedGraphOperations
brighten(Color, double, double) - Static method in class org.Colors
BringToFrontOrBackAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands
BringToFrontOrBackAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BringToFrontOrBackAlgorithm
BringToFrontOrBackAlgorithm(boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BringToFrontOrBackAlgorithm
BRITE - de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KeggDatabases
BriteEntry - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg
BriteEntry(BriteEntry, String, String, Set<String>, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.BriteEntry
BriteHierarchy - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg
BriteHierarchy() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.BriteHierarchy
BroadCastService - Class in de.ipk_gatersleben.ag_nw.graffiti.services.network: Creates a broadcast-service which allows sending and receiving of broadcast messages.
BroadCastService(int, int, int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.services.network.BroadCastService: Creates a broadcast-service which allows sending and receiving of broadcast messages.
BroadCastTask - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.network
BSHinfo - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools
BSHinfo(IOurl) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.BSHinfo
BSHscriptMenuEntry - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools: This class provides the menu entries for the BeanShell-Script Menu Items.
BSHscriptMenuEntry(String, String, boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.BSHscriptMenuEntry: Creates a new ScriptMenuEntry object.
BubblePlotDemo - Class in org.jfree.chart.demo: A bubble chart demo.
BubblePlotDemo(String) - Constructor for class org.jfree.chart.demo.BubblePlotDemo: A demonstration application showing a bubble chart.
BubblyBubblesDemo - Class in org.jfree.chart.demo: A demo that shows how matrix series can be used for charts that follow a constantly changing grid input.
BubblyBubblesDemo(String) - Constructor for class org.jfree.chart.demo.BubblyBubblesDemo: A demonstration application showing a bubble chart using matrix series.
BubblyBubblesDemo2 - Class in org.jfree.chart.demo: A demo that shows how matrix series can be used for charts that follow a constantly changing grid input.
BubblyBubblesDemo2(String) - Constructor for class org.jfree.chart.demo.BubblyBubblesDemo2: A demonstration application showing a bubble chart using matrix series.
BufferedImageResult - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter
BufferedImageResult(BufferedImage, double, View) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.BufferedImageResult
buildCoarseningLevels(MultilevelGraph) - Method in interface org.vanted.plugins.layout.multilevelframework.Merger: Create all coarsening levels.
buildCoarseningLevels(MultilevelGraph) - Method in class org.vanted.plugins.layout.multilevelframework.RandomMerger: Builds the coarsening levels for the graph depending on parameters.
buildCoarseningLevels(MultilevelGraph) - Method in class org.vanted.plugins.layout.multilevelframework.SolarMerger: Builds coarsening Levels for a multilevel Graph by using the Solar Merger as described by Jürgen Hachul.
BuildInfo - Class in org.vanted: A utility helper for accessing build information.
buildShape(EdgeGraphicAttribute, NodeShape, NodeShape) - Method in interface org.graffiti.plugin.view.EdgeShape: Called when one of the nodes belonging to this edge has changed.
buildShape(EdgeGraphicAttribute, NodeShape, NodeShape) - Method in class org.graffiti.plugins.views.defaults.LineEdgeShape: Called when one of the nodes belonging to this edge has changed.
buildShape(EdgeGraphicAttribute, NodeShape, NodeShape) - Method in class org.graffiti.plugins.views.defaults.PolyLineEdgeShape: This method sets all necessary properties of an edge using the values contained within the CollectionAttribute (like coordinates etc.).
buildShape(EdgeGraphicAttribute, NodeShape, NodeShape) - Method in class org.graffiti.plugins.views.defaults.QuadCurveEdgeShape: This method sets all necessary properties of an edge using the values contained within the CollectionAttribute (like coordinates etc.).
buildShape(EdgeGraphicAttribute, NodeShape, NodeShape) - Method in class org.graffiti.plugins.views.defaults.SmoothLineEdgeShape: This method sets all necessary properties of an edge using the values contained within the CollectionAttribute (like coordinates etc.).
buildShape(EdgeGraphicAttribute, NodeShape, NodeShape) - Method in class org.graffiti.plugins.views.defaults.StraightLineEdgeShape: This method sets all necessary properties of an edge using the values contained within the CollectionAttribute (like coordinates etc.).
buildShape(NodeGraphicAttribute) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.DoubleEllipseShape
buildShape(NodeGraphicAttribute) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.MultiComplexShape
buildShape(NodeGraphicAttribute) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.MultiEllipseShape
buildShape(NodeGraphicAttribute) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.MultiNucleicAcidFeatureShape
buildShape(NodeGraphicAttribute) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.MultiRectangleShape
buildShape(NodeGraphicAttribute) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.PaperShape
buildShape(NodeGraphicAttribute) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.RelativePolyShape
buildShape(NodeGraphicAttribute) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNCircleShape
buildShape(NodeGraphicAttribute) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNDissociationShape
buildShape(NodeGraphicAttribute) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNMultiStadiumShape
buildShape(NodeGraphicAttribute) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNProcessShape
buildShape(NodeGraphicAttribute) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNStadiumShape
buildShape(NodeGraphicAttribute) - Method in interface org.graffiti.plugin.view.NodeShape: Shapes itself according to the graphics attribute found in the CollectionAttribute graphics
buildShape(NodeGraphicAttribute) - Method in class org.graffiti.plugins.views.defaults.CircleNodeShape: This method sets all necessary properties using the values contained within the CollectionAttribute (like size etc.).
buildShape(NodeGraphicAttribute) - Method in class org.graffiti.plugins.views.defaults.CircularNodeShape: This method sets all necessary properties using the values contained within the CollectionAttribute (like size etc.).
buildShape(NodeGraphicAttribute) - Method in class org.graffiti.plugins.views.defaults.PolygonalNodeShape
buildShape(NodeGraphicAttribute) - Method in class org.graffiti.plugins.views.defaults.RectangleNodeShape: This method sets all necessary properties using the values contained within the CollectionAttribute.
buildTable(DefaultMutableTreeNode, Collection<? extends Attributable>, String) - Method in class org.graffiti.plugin.inspector.EditPanel: Builds the table that is used for editing attributes from scratch.
buildTable(DefaultMutableTreeNode, Collection<? extends Attributable>, String) - Method in class org.graffiti.plugins.inspectors.defaults.DefaultEditPanel: Builds the table that is used for editing attributes from scratch.
buildTable(Selection, FolderPanel) - Method in class org.graffiti.editor.dialog.ParameterEditPanel: Builds the table that is used for editing parameters
BULB - Static variable in class org.jfree.chart.plot.ThermometerPlot: A constant for the value label position (in the thermometer bulb).
BundleParallelEdges - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands
BundleParallelEdges() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BundleParallelEdges
BundleParallelEdges.Shapes - Enum in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands
ButtonOverlayView - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview: An implementation of org.graffiti.plugin.view.View2D, that displays a graph.
ButtonOverlayView() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.ButtonOverlayView
buttonText - Variable in class org.graffiti.plugins.editcomponents.defaults.ColorChooserEditComponent: DOCUMENT ME!
bValues - Variable in class org.graffiti.plugin.algorithm.ThreadSafeOptions: Array for storing Boolean parameters
bw - Static variable in class qmwi.kseg.som.diagram.Aus
BY_KEY - Static variable in class org.jfree.data.KeyedValueComparatorType: An object representing 'by key' sorting.
BY_VALUE - Static variable in class org.jfree.data.KeyedValueComparatorType: An object representing 'by value' sorting.
ByteAttribute - Class in org.graffiti.attributes: Contains a byte
ByteAttribute(String) - Constructor for class org.graffiti.attributes.ByteAttribute: Constructs a new instance of a ByteAttribute.
ByteAttribute(String, byte) - Constructor for class org.graffiti.attributes.ByteAttribute: Constructs a new instance of a ByteAttribute with the given value.
ByteAttribute(String, Byte) - Constructor for class org.graffiti.attributes.ByteAttribute: Constructs a new instance of a ByteAttribute with the given value.
ByteEditComponent - Class in org.graffiti.plugins.editcomponents.defaults: Represents a gui component, which handles byte values.
ByteEditComponent(Displayable) - Constructor for class org.graffiti.plugins.editcomponents.defaults.ByteEditComponent: Creates a new ByteEditComponent object.

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