S-Index (Vanted 2.8.3 API)

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S

safeFile(File, String, String, Graph) - Static method in class org.graffiti.editor.actions.FileSaveAsAction
sameContainers(Constraint) - Method in class placement.Constraint
Sample - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper
Sample(ConditionInterface) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample
SampleAverage - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper
SampleAverage(SampleInterface) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverage
SampleAverage(SampleInterface, Map<?, ?>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverage
SampleAverageInterface - Interface in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper
SampleEntry - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe
SampleEntry(double, String, String, ArrayList<ReplicateDouble>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.SampleEntry
sampleFunction2D(Function2D, double, double, int, String) - Static method in class org.jfree.data.DatasetUtilities: Creates an XYDataset by sampling the specified function over a fixed range.
sampleId - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe.SqlMeasurementData
SampleInterface - Interface in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper
SampleSignalDataset - Class in org.jfree.chart.demo: A sample signal dataset.
SampleSignalDataset() - Constructor for class org.jfree.chart.demo.SampleSignalDataset: Default constructor.
SampleXYDataset - Class in org.jfree.chart.demo: A dummy dataset for an XY plot.
SampleXYDataset() - Constructor for class org.jfree.chart.demo.SampleXYDataset: Default constructor.
SampleXYDataset2 - Class in org.jfree.chart.demo: Random data for a scatter plot demo.
SampleXYDataset2() - Constructor for class org.jfree.chart.demo.SampleXYDataset2: Creates a sample dataset using default settings (4 series, 100 data items per series, random data in the range 0 - 200).
SampleXYDataset2(int, int) - Constructor for class org.jfree.chart.demo.SampleXYDataset2: Creates a sample dataset.
SampleXYDatasetThread - Class in org.jfree.chart.demo: Implements the runnable interface and updates the SampleXYDataset.
SampleXYDatasetThread(SampleXYDataset) - Constructor for class org.jfree.chart.demo.SampleXYDatasetThread: Creates a new thread.
SampleXYSymbolicDataset - Class in org.jfree.chart.demo: Random data for a symbolic plot demo.
SampleXYSymbolicDataset(String, Integer[][], Integer[][], String[], String[], String[]) - Constructor for class org.jfree.chart.demo.SampleXYSymbolicDataset: Creates a new dataset.
SampleXYZDataset - Class in org.jfree.chart.demo: A quick-and-dirty implementation of the interface.
SampleXYZDataset() - Constructor for class org.jfree.chart.demo.SampleXYZDataset
SampleYSymbolicDataset - Class in org.jfree.chart.demo: A dataset implementation that provides random data for a symbolic plot demo.
SampleYSymbolicDataset(String, int, String[]) - Constructor for class org.jfree.chart.demo.SampleYSymbolicDataset: Creates a new sample dataset.
SampleYSymbolicDataset(String, int, String[], int, int, String[]) - Constructor for class org.jfree.chart.demo.SampleYSymbolicDataset: Creates a new sample dataset.
SampleYSymbolicDataset(String, Double[][], Integer[][], String[], int, int, String[]) - Constructor for class org.jfree.chart.demo.SampleYSymbolicDataset: Creates a new sample dataset.
save() - Method in class org.graffiti.options.AbstractOptionPane: Called when the options dialog's "ok" button is clicked.
save() - Method in class org.graffiti.options.OptionGroup: Calls the save methods of all members.
save() - Method in class org.graffiti.plugin.io.resources.IOurl
save(JComponent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKGraffitiView
save(JComponent) - Method in class org.graffiti.editor.options.LoadSaveOptionsPane
save(JComponent) - Method in class org.graffiti.editor.options.ShortcutsOptionPane
save(JComponent) - Method in class org.graffiti.editor.options.ToolBarOptionPane
save(JComponent) - Method in class org.graffiti.options.AbstractOptionPane
save(JComponent) - Method in interface org.graffiti.options.OptionPane: Called when the options dialog's "ok" button is clicked.
save(IOurl) - Method in class org.graffiti.plugin.io.resources.AbstractResourceIOHandler
save(IOurl) - Method in interface org.graffiti.plugin.io.resources.ResourceIOHandler
SAVE_ACTION_COMMAND - Static variable in interface org.jfree.chart.ChartPanelConstants: Save action command.
saveActiveFile() - Method in class org.graffiti.editor.MainFrame
saveActiveFileAs() - Method in class org.graffiti.editor.MainFrame
saveAs(String) - Method in class org.graffiti.plugin.io.resources.IOurl
saveAs(IOurl, String) - Method in class org.graffiti.plugin.io.resources.AbstractResourceIOHandler
saveAs(IOurl, String) - Method in class org.graffiti.plugin.io.resources.FileSystemHandler
saveAs(IOurl, String) - Method in interface org.graffiti.plugin.io.resources.ResourceIOHandler
saveChartAsJPEG(File, float, JFreeChart, int, int) - Static method in class org.jfree.chart.ChartUtilities: Saves a chart to a file in JPEG format.
saveChartAsJPEG(File, float, JFreeChart, int, int, ChartRenderingInfo) - Static method in class org.jfree.chart.ChartUtilities: Saves a chart to a file in JPEG format.
saveChartAsJPEG(File, JFreeChart, int, int) - Static method in class org.jfree.chart.ChartUtilities: Saves a chart to a file in JPEG format.
saveChartAsJPEG(File, JFreeChart, int, int, ChartRenderingInfo) - Static method in class org.jfree.chart.ChartUtilities: Saves a chart to a file in JPEG format.
saveChartAsPNG(File, JFreeChart, int, int) - Static method in class org.jfree.chart.ChartUtilities: Saves a chart to the specified file in PNG format.
saveChartAsPNG(File, JFreeChart, int, int, ChartRenderingInfo) - Static method in class org.jfree.chart.ChartUtilities: Saves a chart to a file in PNG format.
saveChartAsPNG(File, JFreeChart, int, int, ChartRenderingInfo, boolean, int) - Static method in class org.jfree.chart.ChartUtilities: Saves a chart to a file in PNG format.
saveDMF() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DistanceMatrix
saveGraphAs(Graph, String, String) - Method in class org.graffiti.editor.MainFrame
saveImageAndHTML() - Method in class org.jfree.chart.demo.ImageMapDemo5: Saves the chart image and HTML.
saveImageAndHTML() - Method in class org.jfree.chart.demo.ImageMapDemo6: Saves the chart image and HTML.
savePrefs() - Method in class org.graffiti.managers.pluginmgr.DefaultPluginManager: Saves the plugin manager's prefs.
savePrefs() - Method in interface org.graffiti.managers.pluginmgr.PluginManager: Saves the plugin manager's prefs.
saveRegisteredFeeds() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.RSSFeedManager
saveRessource(Class<?>, String, String, String) - Static method in class org.graffiti.editor.GravistoService: ToDo Test this method (untested copy).
saveScriptCode(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithm
SBGNCircleShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
SBGNCircleShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNCircleShape
SBGNDissociationShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
SBGNDissociationShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNDissociationShape
SBGNDissociationShape(int, int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNDissociationShape
SBGNMultiStadiumShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
SBGNMultiStadiumShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNMultiStadiumShape
SBGNMultiStadiumShape(boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNMultiStadiumShape
SBGNProcessShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
SBGNProcessShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNProcessShape
SBGNStadiumShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
SBGNStadiumShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNStadiumShape
SBML - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SBML_ALGEBRAIC_RULE - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SBML_ANNOTATION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SBML_ASSIGNMENT_RULE - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SBML_Cluster - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SBML_COMPARTMENT - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SBML_Compartment_Reader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml
SBML_Compartment_Reader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_Compartment_Reader
SBML_Compartment_Writer - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml
SBML_Compartment_Writer() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_Compartment_Writer
SBML_Constants - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
SBML_Constants() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SBML_CONSTRAINT - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SBML_Constraint_Reader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml
SBML_Constraint_Reader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_Constraint_Reader
SBML_Constraint_Writer - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml
SBML_Constraint_Writer() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_Constraint_Writer
SBML_EVENT - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SBML_Event_Reader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml
SBML_Event_Reader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_Event_Reader
SBML_Event_Writer - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml
SBML_Event_Writer() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_Event_Writer
SBML_FUNCTION_DEFINITION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SBML_FunctionDefinition_Reader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml
SBML_FunctionDefinition_Reader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_FunctionDefinition_Reader
SBML_FunctionDefinition_Writer - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml
SBML_FunctionDefinition_Writer() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_FunctionDefinition_Writer
SBML_HEADLINE - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SBML_INITIAL_ASSIGNMENT - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SBML_InitialAssignment_Reader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml
SBML_InitialAssignment_Reader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_InitialAssignment_Reader
SBML_InitialAssignment_Writer - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml
SBML_InitialAssignment_Writer() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_InitialAssignment_Writer
SBML_KINETIC_LAW - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SBML_Label - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SBML_LAYOUT_EXTENSION_NAMESPACE - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper
SBML_LAYOUT_ID - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SBML_Logger - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml: Special logging wrapper or SBML errors currently mutes the errors thrown by the SBML Reader Later it'll be integrated in the new notification-framework
SBML_Logger() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Logger
SBML_META_ID - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SBML_Model_Reader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml
SBML_Model_Reader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_Model_Reader
SBML_Model_Writer - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml
SBML_Model_Writer() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_Model_Writer
SBML_NON_RDF_ANNOTATION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SBML_NOTES - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SBML_PARAMETER - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SBML_Parameter_Reader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml
SBML_Parameter_Reader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_Parameter_Reader
SBML_Parameter_Writer - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml
SBML_Parameter_Writer() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_Parameter_Writer
SBML_RATE_RULE - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SBML_Reaction_Reader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml
SBML_Reaction_Reader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_Reaction_Reader
SBML_Reaction_Writer - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml
SBML_Reaction_Writer() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_Reaction_Writer
SBML_ROLE - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SBML_Rule_Reader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml
SBML_Rule_Reader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_Rule_Reader
SBML_Rule_Writer - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml
SBML_Rule_Writer() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_Rule_Writer
SBML_SBase_Reader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml
SBML_SBase_Reader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_SBase_Reader
SBML_SBase_Writer - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml
SBML_SBase_Writer() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_SBase_Writer
SBML_SBML_Reader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml
SBML_SBML_Reader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_SBML_Reader
SBML_SBML_Writer - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml
SBML_SBML_Writer() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_SBML_Writer
SBML_SBOTERM - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SBML_SPECIES - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SBML_Species_Reader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml
SBML_Species_Reader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_Species_Reader
SBML_Species_Writer - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml
SBML_Species_Writer() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_Species_Writer
SBML_UNIT_DEFINITION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SBML_UnitDefinition_Reader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml
SBML_UnitDefinition_Reader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_UnitDefinition_Reader
SBML_UnitDefinition_Writer - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml
SBML_UnitDefinition_Writer() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_UnitDefinition_Writer
SBML_XML_Reader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml
SBML_XML_Reader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_XML_Reader
SBML_XML_ReaderPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml: DOCUMENT ME!
SBML_XML_ReaderPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_XML_ReaderPlugin
SBML_XML_ReaderWriterPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml: Importer and Exporter of SBML format Add-on.
SBML_XML_ReaderWriterPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_XML_ReaderWriterPlugin
SBML_XML_Writer - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml
SBML_XML_Writer() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_XML_Writer: Constructor
SBML_XML_WriterPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml: DOCUMENT ME!
SBML_XML_WriterPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sbml.SBML_XML_WriterPlugin
SBMLAlgebraicRule - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
SBMLAlgebraicRule(Graph, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLAlgebraicRule
SBMLAlgebraicRule(Graph, String, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLAlgebraicRule
SBMLAssignmentRule - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
SBMLAssignmentRule(Graph, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLAssignmentRule
SBMLAssignmentRule(Graph, String, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLAssignmentRule
SBMLCompartment - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
SBMLCompartment(Graph, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartment: Constructor.
SBMLCompartment(Graph, String, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartment: Constructor.
SBMLCompartmentHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
SBMLCompartmentHelper() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartmentHelper
SBMLConstraint - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
SBMLConstraint(Graph, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLConstraint
SBMLConstraint(Graph, String, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLConstraint
SBMLConstraintHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
SBMLConstraintHelper() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLConstraintHelper
SBMLEventAssignmentHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
SBMLEventAssignmentHelper(Graph, String, int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventAssignmentHelper
SBMLEventAssignmentHelper(Graph, String, String, int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventAssignmentHelper
SBMLEventHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
SBMLEventHelper(Graph, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
SBMLEventHelper(Graph, String, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
SBMLFunctionDefinition - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
SBMLFunctionDefinition(Graph, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLFunctionDefinition: Constructor.
SBMLFunctionDefinition(Graph, String, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLFunctionDefinition: Constructor.
SBMLFunctionDefinitionHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
SBMLFunctionDefinitionHelper() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLFunctionDefinitionHelper
SBMLHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
SBMLHelper() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper
SBMLInitialAssignment - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
SBMLInitialAssignment(Graph, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLInitialAssignment
SBMLInitialAssignment(Graph, String, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLInitialAssignment
SBMLInitialAssignmentHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
SBMLInitialAssignmentHelper() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLInitialAssignmentHelper
SBMLLocalParameter - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
SBMLLocalParameter(Graph, int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter
SBMLLocalParameter(Graph, String, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter: Constructor.
SBMLNodesNiceIdHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
SBMLNodesNiceIdHelper() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLNodesNiceIdHelper
SBMLParameter - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
SBMLParameter(Graph, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLParameter
SBMLParameter(Graph, String, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLParameter
SBMLParameterHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
SBMLParameterHelper() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLParameterHelper
SBMLRateRule - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
SBMLRateRule(Graph, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLRateRule
SBMLRateRule(Graph, String, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLRateRule
SBMLReaction - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.metatool
SBMLReaction(Node) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.metatool.SBMLReaction
SBMLReactionHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
SBMLReactionHelper(Graph) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper: Constructor.
SBMLRuleHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
SBMLRuleHelper() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLRuleHelper
SBMLSpeciesHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
SBMLSpeciesHelper(Graph) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper: Constructor.
SBMLSUBSTANCEUNITS - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.ConstantsName
SBMLUnit - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
SBMLUnit(Graph, String, int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLUnit
SBMLUnit(Graph, String, String, int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLUnit
SBMLUnitDefinition - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
SBMLUnitDefinition(Graph, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLUnitDefinition
SBMLUnitDefinition(Graph, String, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLUnitDefinition
SBMLUnitDefinitionHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml
SBMLUnitDefinitionHelper() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLUnitDefinitionHelper
SBOTERM - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SBRACE - Static variable in class org.graffiti.plugins.ios.importers.gml.sym
scale(double) - Method in class org.Vector2d
SCALE_AREA_TO_1 - Static variable in class org.jfree.data.statistics.HistogramType: Scale area to one.
SCALE_ON_BOTH_AXES - Static variable in class org.jfree.chart.renderer.XYBubbleRenderer: A useful constant.
SCALE_ON_DOMAIN_AXIS - Static variable in class org.jfree.chart.renderer.XYBubbleRenderer: A useful constant.
SCALE_ON_RANGE_AXIS - Static variable in class org.jfree.chart.renderer.XYBubbleRenderer: A useful constant.
scaleComponent(Component) - Method in class org.vanted.scaling.scalers.component.WindowScaler: A method to be called when this WindowScaler has been dispatched to some immediate Component to be scaled.
scaleComponent(JComponent) - Method in class org.vanted.scaling.scalers.component.AbstractButtonScaler: A method to be called when this AbstractButtonScaler has been dispatched to some immediate Component to be scaled.
scaleComponent(JComponent) - Method in class org.vanted.scaling.scalers.component.ComponentScaler: A method to be called when this ComponentScaler has been dispatched to some immediate JComponent to be scaled - both from the central ComponentRegulator and on its own.
scaleComponent(JComponent) - Method in class org.vanted.scaling.scalers.component.JLabelScaler: A method to be called when this JLabelScaler has been dispatched to some immediate Component to be scaled.
scaleComponent(JComponent) - Method in class org.vanted.scaling.scalers.component.JOptionPaneScaler: A method to be called when this JOptionPaneScaler has been dispatched to some immediate Component to be scaled.
scaleComponent(JComponent) - Method in class org.vanted.scaling.scalers.component.JSplitPaneScaler
scaleComponent(JComponent) - Method in class org.vanted.scaling.scalers.component.JTabbedPaneScaler: A method to be called when this JTabbedPaneScaler has been dispatched to some immediate Component to be scaled.
scaleComponent(JComponent) - Method in class org.vanted.scaling.scalers.component.JTextComponentScaler: A method to be called when this JTextComponentScaler has been dispatched to some immediate Component to be scaled.
scaleComponent(JComponent, boolean) - Static method in class org.vanted.scaling.Toolbox: Version of Toolbox.scaleComponent(JComponent, float, boolean) using the default DPI scaling ratio.
scaleComponent(JComponent, float, boolean) - Static method in class org.vanted.scaling.Toolbox: This automatically marks the component and its children as scaled, while doing so.
scaleComponents(float, Container) - Method in class org.vanted.scaling.ScalingCoordinator: Scales JComponents.
scaleComponentsOf(Component[]) - Method in class org.vanted.scaling.ComponentRegulator: See ComponentRegulator.scaleComponentsOf(Container).
scaleComponentsOf(Component[], boolean, boolean) - Method in class org.vanted.scaling.ComponentRegulator: See ComponentRegulator.scaleComponentsOf(Container, boolean, boolean) and ComponentRegulator.scaleComponentsOf(Component[]).
scaleComponentsOf(Container) - Method in class org.vanted.scaling.ComponentRegulator: Recursively iterates the component tree and initiate scaling for any encountered JComponents.
scaleComponentsOf(Container, boolean, boolean) - Method in class org.vanted.scaling.ComponentRegulator: Override of ComponentRegulator.scaleComponentsOf(Container), allowing for checking whether Containers components are scaled and only when those aren't then scaling, and additionally marking them as such or not.
scaleCssPixels(int) - Static method in class org.vanted.scaling.DPIHelper: The CSS pixel px tries to match the reference pixel, which depends on screen DPI and viewer distance from screen.
scaleDefaults(float) - Method in class org.vanted.scaling.ScalingCoordinator: Scaling Look & Feel Defaults.
ScaledFontUIResource - Class in org.vanted.scaling.resources: Customized FontUIResource class.
ScaledFontUIResource(String, int, int) - Constructor for class org.vanted.scaling.resources.ScaledFontUIResource
ScaledIcon - Class in org.vanted.scaling.resources: Given a regular Icon this would produce a scaled clone of it.
ScaledIcon(Icon, float) - Constructor for class org.vanted.scaling.resources.ScaledIcon: Calling this would initialize an Icon Object clone of the passed oldIcon, but painted in a scaled environment, determined by the scaleFactor.
scaleHTMLComponent(JComponent) - Static method in class org.vanted.scaling.ComponentRegulator: Similar to ComponentRegulator.conduct(JComponent), but for HTML scaling.
scaleJEditorPaneUnorderedLists(JEditorPane, int, String) - Static method in class org.vanted.scaling.Toolbox: Prepares an <ul> by removing any style-type elements, such as bullets, squares, circles or discs with none.
Scaler - Interface in org.vanted.scaling.scalers: All scalers should implement this interface.
ScalerLoader - Class in org.vanted.scaling: A 'static' Loader for scaling effects to take place.
scaleText(String) - Static method in class org.vanted.scaling.scalers.component.HTMLScaleSupport: Scales hard-sized HTML tags, such as small, big, code, etc.
ScalingCoordinator - Class in org.vanted.scaling: It coordinates the scaling among the possible L&Fs and initiates Components- scaling.
ScalingCoordinator() - Constructor for class org.vanted.scaling.ScalingCoordinator: Empty Coordinator.
ScalingCoordinator(float, Container) - Constructor for class org.vanted.scaling.ScalingCoordinator
ScalingCoordinator(Container) - Constructor for class org.vanted.scaling.ScalingCoordinator: This uses the preferences-stored factor.
ScalingCoordinator(Container, boolean) - Constructor for class org.vanted.scaling.ScalingCoordinator
ScalingSlider - Class in org.vanted.scaling: The front-end of the provided scalers.
ScalingSlider(int, int, int, int, Container) - Constructor for class org.vanted.scaling.ScalingSlider: Specify your own Slider model.
ScalingSlider(int, int, int, Container) - Constructor for class org.vanted.scaling.ScalingSlider: Specify your own Slider model.
ScalingSlider(int, int, Container) - Constructor for class org.vanted.scaling.ScalingSlider: Specify your own Slider model.
ScalingSlider(Container) - Constructor for class org.vanted.scaling.ScalingSlider: Slider to allow live modifications to the scaling of components.
ScanForAddonUpdates - Class in org.vanted.updater
ScanForAddonUpdates() - Constructor for class org.vanted.updater.ScanForAddonUpdates
ScanForUpdate - Class in org.vanted.updater: Update file has very simple format: For the message string..
ScanForUpdate() - Constructor for class org.vanted.updater.ScanForUpdate
ScanListPriorityQueue<T extends Comparable<T>> - Class in placement
ScanListPriorityQueue() - Constructor for class placement.ScanListPriorityQueue
ScatterPlotDemo - Class in org.jfree.chart.demo: A demo scatter plot.
ScatterPlotDemo(String) - Constructor for class org.jfree.chart.demo.ScatterPlotDemo: A demonstration application showing a scatter plot.
ScatterPlotDemo2 - Class in org.jfree.chart.demo: A demo scatter plot.
ScatterPlotDemo2(String) - Constructor for class org.jfree.chart.demo.ScatterPlotDemo2: A demonstration application showing a scatter plot.
ScatterPlotDemo3 - Class in org.jfree.chart.demo: A demo scatter plot with some code showing how to convert between Java2D coordinates and (x, y) coordinates.
ScatterPlotDemo3(String) - Constructor for class org.jfree.chart.demo.ScatterPlotDemo3: A demonstration application showing a scatter plot.
ScatterPlotDemo4 - Class in org.jfree.chart.demo: A demo scatter plot showing the use of the XYDotRenderer class.
ScatterPlotDemo4(String) - Constructor for class org.jfree.chart.demo.ScatterPlotDemo4: A demonstration application showing a scatter plot.
scenario - package scenario
Scenario - Class in scenario
Scenario(File) - Constructor for class scenario.Scenario
Scenario(InputStream) - Constructor for class scenario.Scenario
Scenario(String, String) - Constructor for class scenario.Scenario: Create a new scenario
ScenarioGui - Interface in scenario
ScenarioService - Class in scenario
ScenarioService() - Constructor for class scenario.ScenarioService
ScenarioServiceHandlesStoredParametersOption - Interface in scenario
ScenarioServiceIgnoreAlgorithm - Interface in scenario
SCRIPT_ACCESS - org.FeatureSet
SEARCH - org.graffiti.plugin.algorithm.Category
searchAlgorithms(SearchAlgorithms.OperatorOnCategories[]) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.services.algorithms.SearchAlgorithms: Searches Algorithms listed in Vanted, given an array of operators on categories.
searchAlgorithms(Category[]) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.services.algorithms.SearchAlgorithms: Searches Algorithms listed in Vanted, given an array of categories that this algorithm needs to be a member of The categories are combined with an AND operator
SearchAlgorithms - Class in de.ipk_gatersleben.ag_nw.graffiti.services.algorithms
SearchAlgorithms() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.services.algorithms.SearchAlgorithms
SearchAlgorithms.LogicalOp - Enum in de.ipk_gatersleben.ag_nw.graffiti.services.algorithms
SearchAlgorithms.OperatorOnCategories - Class in de.ipk_gatersleben.ag_nw.graffiti.services.algorithms
SearchAndSelecAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection: Labels all selected nodes with unique numbers.
SearchAndSelecAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchAndSelecAlgorithm: Constructs a new instance.
SearchAttributeHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection
SearchAttributeHelper() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchAttributeHelper
searchBoolean - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchType
searchColor - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchType
SearchDialog - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection
SearchDialog(Frame, Collection<AttributePathNameSearchType>, boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchDialog
searchDouble - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchType
SearchFilter - Interface in org
searchForAttribute(Attribute, Class) - Static method in class org.graffiti.util.GeneralUtils: Returns the first attribute it finds that has the given class type.
searchForAttributes(Attribute, Class, List) - Static method in class org.graffiti.util.GeneralUtils: Searches for all attributes that have the given class type.
searchForModels(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.RestApiBiomodels: Calls to the database, for a given HTTP request and creates a Simple Model of all models found in the Database.
searchIndividualPlantOrLineNames(TableData, int, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentData: Search possible line names out of the data column headers.
searchIndividualSubstances(TableData, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentData: Initialize list of known Substance Names; use the data from the given column.
searchInteger - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchType
SearchLogic - Enum in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection
searchMatched - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchLogic
searchMax(Vector<SOMdataEntry>, String) - Method in class qmwi.kseg.som.DataSet
searchMin(Vector<SOMdataEntry>, String) - Method in class qmwi.kseg.som.DataSet
searchNotMatched - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchLogic
SearchOperation - Enum in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection
SearchOption - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection
SearchOption() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption
SearchOption(LogicConnection, NodeOrEdge, String, String, String, int, double, boolean, SearchType, SearchLogic, SearchOperation) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption
SearchOptionEditorGUI - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection
SearchOptionEditorGUI(SearchOption, Collection<AttributePathNameSearchType>, boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOptionEditorGUI
SearchOptionEditorGUI(SearchOption, Collection<AttributePathNameSearchType>, boolean, boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOptionEditorGUI
searchPatterns(Graph, List<Graph>, Algorithm, boolean, boolean, boolean, BackgroundTaskStatusProviderSupportingExternalCall) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.NaivePatternFinderAlgorithm: Search a number of pattern graphs in the target graph, beginning with the largest pattern (determined by number of nodes)
searchString - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchType
SearchType - Enum in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection
SECID - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathGene
Second - Class in org.jfree.chart.demo: A simple demo.
Second - Class in org.jfree.data.time: Represents a second in a particular day.
Second() - Constructor for class org.jfree.chart.demo.Second
Second() - Constructor for class org.jfree.data.time.Second: Constructs a new Second, based on the system date/time.
Second(int, int, int, int, int, int) - Constructor for class org.jfree.data.time.Second: Creates a new second.
Second(int, Minute) - Constructor for class org.jfree.data.time.Second: Constructs a new Second.
Second(Date) - Constructor for class org.jfree.data.time.Second: Constructs a second.
Second(Date, TimeZone) - Constructor for class org.jfree.data.time.Second: Creates a new second based on the supplied time and time zone.
SECOND - Static variable in class org.jfree.chart.axis.DateTickUnit: A constant for seconds.
SECOND_MORE_GENERAL - org.graffiti.event.PathComparisonResult
SecondaryDatasetDemo2 - Class in org.jfree.chart.demo: A demo showing the addition and removal of secondary datasets / renderers.
SecondaryDatasetDemo2(String) - Constructor for class org.jfree.chart.demo.SecondaryDatasetDemo2: Constructs a new demonstration application.
SegmentedHighLowChartDemo - Class in org.jfree.chart.demo: A demo showing a daily and intraday segmented high-low-open-close charts.
SegmentedHighLowChartDemo(String, boolean, int) - Constructor for class org.jfree.chart.demo.SegmentedHighLowChartDemo: A demonstration application showing a high-low-open-close chart using a segmented or non-segmented axis.
SegmentedTimeline - Class in org.jfree.chart.axis: A Timeline that implements a "segmented" timeline with included, excluded and exception segments.
SegmentedTimeline(long, int, int) - Constructor for class org.jfree.chart.axis.SegmentedTimeline: Constructs a new segmented timeline, optionaly using another segmented timeline as its base.
SegmentedTimeline.Segment - Class in org.jfree.chart.axis: Internal class to represent a valid segment for this timeline.
select(URI) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.LoggingProxy
SelectAlgorithm - Class in vanted_feature: Deprecated.
SelectAlgorithm() - Constructor for class vanted_feature.SelectAlgorithm: Deprecated.
SelectAllAction - Class in org.graffiti.editor.actions: Represents a "select all graph elements" action.
SelectAllAction(MainFrame) - Constructor for class org.graffiti.editor.actions.SelectAllAction: Constructs a new copy action.
selectAndRunLayoutAlgorithm(Graph, Selection, String, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.services.AlgorithmServices: This method calls a user defined layout algorithm for the given graph.
SelectClusterAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands
SelectClusterAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SelectClusterAlgorithm
SelectCompoundsAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands
SelectCompoundsAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectCompoundsAlgorithm
selected - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.NodeCacheEntry: This field should be set to true, if the user has selected this node in the GUI.
selected - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.NodeCacheEntry3d: This field should be set to true, if the user has selected this node in the GUI.
SELECTED - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.TristateCheckBox
SelectEdgesAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands
SelectEdgesAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectEdgesAlgorithm
selectElements(Collection<? extends Attributable>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper
SelectEnzymesAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands
SelectEnzymesAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectEnzymesAlgorithm
SelectGenesAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands
SelectGenesAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectGenesAlgorithm
selectGraphElement(Edge) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper
selectGraphElement(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper
selectGraphElements(boolean, Collection<? extends GraphElement>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper
selectGraphElements(Collection<? extends GraphElement>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper
selectInsignificant1s - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.FisherOperationMode
selectInsignificant2s - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.FisherOperationMode
Selection - Class in org.graffiti.selection: Contains selected nodes and edges.
Selection() - Constructor for class org.graffiti.selection.Selection: Constructs a new Selection instance with the given name.
Selection(String) - Constructor for class org.graffiti.selection.Selection: Constructs a new Selection instance with the given name.
Selection(String, Collection<?>) - Constructor for class org.graffiti.selection.Selection
Selection(Collection<?>) - Constructor for class org.graffiti.selection.Selection
SELECTION - org.graffiti.plugin.algorithm.Category
SelectionAction - Class in org.graffiti.plugin.actions: Represents an action, which depends on a selection.
SelectionAction(String, MainFrame) - Constructor for class org.graffiti.plugin.actions.SelectionAction: Constructs a new selection action with the given name.
SelectionAdapter - Class in org.graffiti.selection: Adapter for the SelectionListener interface, providing default empty implementation.
SelectionAdapter() - Constructor for class org.graffiti.selection.SelectionAdapter
SelectionChangeAction - Class in org.graffiti.plugins.guis.switchselections: DOCUMENT ME!
SelectionChangeAction(Selection, EditorSession) - Constructor for class org.graffiti.plugins.guis.switchselections.SelectionChangeAction: Creates a new SelectionChangeAction object.
selectionChanged() - Method in class org.graffiti.selection.SelectionModel: Informs the registered listeners that the active session has changed.
selectionChanged(ListSelectionEvent) - Method in class org.graffiti.managers.pluginmgr.PluginManagerDialog: Called, if the selection in the list changes.
selectionChanged(SelectionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPluginControl
selectionChanged(SelectionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.zoomfit.ZoomFitChangeComponent
selectionChanged(SelectionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.algorithms.AlgorithmPanelFactory: Re-initialize the algorithm panel for a change in selection.
selectionChanged(SelectionEvent) - Method in class org.graffiti.editor.actions.AddAttributeAction: DOCUMENT ME!
selectionChanged(SelectionEvent) - Method in class org.graffiti.editor.actions.ChangeAttributeValueAction: DOCUMENT ME!
selectionChanged(SelectionEvent) - Method in class org.graffiti.editor.actions.DeleteAttributeAction: DOCUMENT ME!
selectionChanged(SelectionEvent) - Method in class org.graffiti.editor.MainFrame
selectionChanged(SelectionEvent) - Method in class org.graffiti.editor.StatusBar
selectionChanged(SelectionEvent) - Method in class org.graffiti.plugin.inspector.SubtabHostTab
selectionChanged(SelectionEvent) - Method in class org.graffiti.plugin.tool.AbstractTool: Called when the selection has changed.
selectionChanged(SelectionEvent) - Method in class org.graffiti.plugins.guis.switchselections.SelectionMenu
selectionChanged(SelectionEvent) - Method in class org.graffiti.plugins.guis.switchselections.SwitchSelectionsPlugin
selectionChanged(SelectionEvent) - Method in class org.graffiti.plugins.inspectors.defaults.AbstractTab
selectionChanged(SelectionEvent) - Method in class org.graffiti.plugins.inspectors.defaults.EdgeTab
selectionChanged(SelectionEvent) - Method in class org.graffiti.plugins.inspectors.defaults.GraphTab
selectionChanged(SelectionEvent) - Method in class org.graffiti.plugins.inspectors.defaults.Inspector: Is called, if something in the selection model changed.
selectionChanged(SelectionEvent) - Method in class org.graffiti.plugins.inspectors.defaults.NodeTab
selectionChanged(SelectionEvent) - Method in class org.graffiti.selection.SelectionAdapter
selectionChanged(SelectionEvent) - Method in interface org.graffiti.selection.SelectionListener: Is called, if something in the selection model changed.
SelectionEvent - Class in org.graffiti.selection: DOCUMENT ME!
SelectionEvent(Selection) - Constructor for class org.graffiti.selection.SelectionEvent: Constructs a new SelectionEvent.
selectionListChanged(SelectionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPluginControl
selectionListChanged(SelectionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.zoomfit.ZoomFitChangeComponent
selectionListChanged(SelectionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.algorithms.AlgorithmPanelFactory: Left intenionally empty.
selectionListChanged(SelectionEvent) - Method in class org.graffiti.editor.MainFrame
selectionListChanged(SelectionEvent) - Method in class org.graffiti.editor.StatusBar
selectionListChanged(SelectionEvent) - Method in class org.graffiti.plugin.inspector.SubtabHostTab
selectionListChanged(SelectionEvent) - Method in class org.graffiti.plugin.tool.AbstractTool
selectionListChanged(SelectionEvent) - Method in class org.graffiti.plugins.guis.switchselections.SelectionMenu
selectionListChanged(SelectionEvent) - Method in class org.graffiti.plugins.guis.switchselections.SwitchSelectionsPlugin
selectionListChanged(SelectionEvent) - Method in class org.graffiti.plugins.inspectors.defaults.AbstractTab
selectionListChanged(SelectionEvent) - Method in class org.graffiti.plugins.inspectors.defaults.Inspector
selectionListChanged(SelectionEvent) - Method in class org.graffiti.selection.SelectionAdapter
selectionListChanged(SelectionEvent) - Method in interface org.graffiti.selection.SelectionListener: Is called, if a named selection is added or removed.
SelectionListener - Interface in org.graffiti.selection: Interfaces a listener, which wants to be informed about a change in the selection model.
SelectionMenu - Class in org.graffiti.plugins.guis.switchselections: A menu providing entries to manage selections.
SelectionMenu() - Constructor for class org.graffiti.plugins.guis.switchselections.SelectionMenu: Creates a new SelectionMenu object.
SelectionModel - Class in org.graffiti.selection: Contains a list of selections and a reference to the current selection.
SelectionModel() - Constructor for class org.graffiti.selection.SelectionModel: Constructs a new SelectionModel.
SelectionParameter - Class in org.graffiti.plugin.parameter: This class contains a single Node.
SelectionParameter(String, String) - Constructor for class org.graffiti.plugin.parameter.SelectionParameter: Constructs a new selection parameter.
SelectionParameter(String, String, Selection) - Constructor for class org.graffiti.plugin.parameter.SelectionParameter: Constructs a new selection parameter.
SelectionParameter(Selection, String, String) - Constructor for class org.graffiti.plugin.parameter.SelectionParameter: Constructs a new selection parameter.
SelectionRectangle - Class in org.graffiti.plugins.modes.defaults
SelectionRectangle() - Constructor for class org.graffiti.plugins.modes.defaults.SelectionRectangle
SelectionSaveAction - Class in org.graffiti.plugins.guis.switchselections: Saves a selection as long as the session lives under some name.
SelectionSaveAction(String) - Constructor for class org.graffiti.plugins.guis.switchselections.SelectionSaveAction: Creates a new SelectionSaveAction object.
selectionSyncObject - Variable in class org.graffiti.editor.GravistoService: DOCUMENT ME!
SelectLeafNodesAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy
SelectLeafNodesAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.SelectLeafNodesAlgorithm: Constructs a new instance.
SelectMapNodesAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands
SelectMapNodesAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectMapNodesAlgorithm
SelectMapTitleNodesAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands
SelectMapTitleNodesAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectMapTitleNodesAlgorithm
selectMultipleFile() - Method in class org.graffiti.plugin.parameter.MultiFileSelectionParameter
selectNodes(boolean, Collection<Node>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper
selectNodes(Collection<Node>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper
SelectNodesComponent - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection
SelectNodesComponent(String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SelectNodesComponent
SelectNodesWithExperimentalDataAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands
SelectNodesWithExperimentalDataAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectNodesWithExperimentalDataAlgorithm
SelectReactionsAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands
SelectReactionsAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectReactionsAlgorithm
SelectResultsVisitor - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder
SelectResultsVisitor() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.SelectResultsVisitor
selectSignificantNodes1s - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.FisherOperationMode
selectSignificantNodes2s - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.FisherOperationMode
SelectWindowsAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar
SelectWindowsAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.SelectWindowsAlgorithm
SEMANTIC - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathReaction
sendBroadcast(byte[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.network.BroadCastService: Sends a broadcast to all of the nodes the ip should be the ip for the network
sender - Variable in class de.ipk_gatersleben.ag_nw.graffiti.UDPreceiveStructure
SEPARATOR - Static variable in interface org.graffiti.attributes.Attribute: The path seperator for the attributes hierarchy.
SEPERATOR - Static variable in class org.graffiti.plugin.io.resources.IOurl
SEPERATOR - Static variable in class org.graffiti.plugin.io.resources.ResourceIOManager
SerializationTest1 - Class in org.jfree.chart.demo: Based on the DynamicDataDemo class, this demo serializes and deserializes the chart before displaying it - the idea is that this confirms that the serialization process returns a working chart.
SerializationTest1(String) - Constructor for class org.jfree.chart.demo.SerializationTest1: Constructs a new demonstration application.
Serializer - Interface in org.graffiti.plugin.io: Defines a generic serializer which provides a set of extensions.
serie - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint
Series - Class in org.jfree.data: Base class representing a data series.
SERIES_CUMULATIVE - Static variable in class org.jfree.chart.renderer.RangeType: The overall range is determined by looking at the running total within each series.
SERIES_TAG - Static variable in interface org.jfree.data.xml.DatasetTags: The 'Series' element name.
seriesChanged(SeriesChangeEvent) - Method in class org.jfree.data.AbstractSeriesDataset: Called when a series belonging to the dataset changes.
seriesChanged(SeriesChangeEvent) - Method in class org.jfree.data.DefaultTableXYDataset: This method receives notification when a series belonging to the dataset changes.
seriesChanged(SeriesChangeEvent) - Method in class org.jfree.data.gantt.TaskSeriesCollection: Called when a series belonging to the dataset changes.
seriesChanged(SeriesChangeEvent) - Method in interface org.jfree.data.SeriesChangeListener: Called when an observed series changes in some way.
seriesChanged(SeriesChangeEvent) - Method in class org.jfree.data.TimeSeriesTableModel: Receives notification that the time series has been changed.
SeriesChangeEvent - Class in org.jfree.data: An event with details of a change to a series.
SeriesChangeEvent(Object) - Constructor for class org.jfree.data.SeriesChangeEvent: Constructs a new event.
SeriesChangeListener - Interface in org.jfree.data: Methods for receiving notification of changes to a data series.
SeriesDataset - Interface in org.jfree.data: The interface for a dataset consisting of one or many series of data.
SeriesException - Exception in org.jfree.data: A general purpose exception class for data series.
SeriesException(String) - Constructor for exception org.jfree.data.SeriesException: Constructs a new series exception.
seriesId - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow
seriesLabel - Variable in class qmwi.kseg.som.diagram.DiagrammData
seriesNameListFromDataArray(Object[][]) - Static method in class org.jfree.data.DefaultWindDataset: Utility method for automatically generating series names.
SeriesShapeFactory - Class in org.jfree.chart: Deprecated.
No longer used. Shapes are supplied by the DrawingSupplier class.
SeriesShapeFactory() - Constructor for class org.jfree.chart.SeriesShapeFactory: Deprecated.
Session - Class in org.graffiti.session: Contains a session.
Session() - Constructor for class org.graffiti.session.Session: Constructs a new session instance with an empty graph and the corresponding constraint checker.
Session(Graph) - Constructor for class org.graffiti.session.Session: Constructs a new session instance with the given graph.
SessionAdapter - Class in org.graffiti.session: Adapter for the SessionListener interface, providing default empty implementation.
SessionAdapter() - Constructor for class org.graffiti.session.SessionAdapter
SessionAdapterExt - Class in org.graffiti.session: Adapter for the SessionListenerExt interface, providing default empty implementation.
SessionAdapterExt() - Constructor for class org.graffiti.session.SessionAdapterExt
sessionChanged() - Method in class org.graffiti.editor.FrameTabbedPane
sessionChanged(Session) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.IPK_StandardTools
sessionChanged(Session) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.ClusterHelperToolbarComponent
sessionChanged(Session) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataInfoPane
sessionChanged(Session) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPatternLayout
sessionChanged(Session) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPluginControl
sessionChanged(Session) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabVisualisationControl: Deprecated.
sessionChanged(Session) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation.NavigationComponentView
sessionChanged(Session) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.zoomfit.AlignNodesComponent
sessionChanged(Session) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.zoomfit.ZoomFitChangeComponent
sessionChanged(Session) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SelectNodesComponent
sessionChanged(Session) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.link_visualization_legend.LinkVisualizationLegendPlugin
sessionChanged(Session) - Method in class org.graffiti.editor.MainFrame: Invoked when the session changed.
sessionChanged(Session) - Method in class org.graffiti.editor.StatusBar
sessionChanged(Session) - Method in class org.graffiti.plugin.inspector.SubtabHostTab
sessionChanged(Session) - Method in class org.graffiti.plugin.tool.AbstractTool
sessionChanged(Session) - Method in class org.graffiti.plugin.tool.AbstractUndoableTool
sessionChanged(Session) - Method in class org.graffiti.plugins.guis.switchselections.SelectionMenu
sessionChanged(Session) - Method in class org.graffiti.plugins.inspectors.defaults.AbstractTab
sessionChanged(Session) - Method in class org.graffiti.plugins.inspectors.defaults.EdgeTab
sessionChanged(Session) - Method in class org.graffiti.plugins.inspectors.defaults.GraphTab
sessionChanged(Session) - Method in class org.graffiti.plugins.inspectors.defaults.Inspector: This method is called when the session changes.
sessionChanged(Session) - Method in class org.graffiti.plugins.modes.defaults.MegaMoveTool
sessionChanged(Session) - Method in class org.graffiti.plugins.modes.defaults.MegaTools: Called when the active session is changed.
sessionChanged(Session) - Method in class org.graffiti.plugins.tools.enhancedzoomtool.ZoomChangeComponent
sessionChanged(Session) - Method in class org.graffiti.plugins.tools.zoomtool.ZoomChangeComponent: Deprecated.
sessionChanged(Session) - Method in class org.graffiti.session.SessionAdapter
sessionChanged(Session) - Method in class org.graffiti.session.SessionAdapterExt
sessionChanged(Session) - Method in interface org.graffiti.session.SessionListener: This method is called when the session changes.
sessionChanged(Session) - Method in class org.graffiti.util.DesktopMenuManager
sessionChanged(Session) - Method in class org.vanted.plugins.layout.stressminimization.BackgroundExecutionAlgorithm
sessionChanged(Session) - Method in class org.vanted.plugins.layout.stressminimization.parameters.LandmarkSliderComponent
sessionChanged(Session) - Method in class org.vanted.scaling.vanted.GraphScaler
sessionClosed(Session) - Method in class org.graffiti.session.SessionAdapterExt
sessionClosed(Session) - Method in interface org.graffiti.session.SessionListenerExt: Is called once the session has been removed from the system.
sessionDataChanged(Session) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.IPK_StandardTools
sessionDataChanged(Session) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.ClusterHelperToolbarComponent
sessionDataChanged(Session) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataInfoPane
sessionDataChanged(Session) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPatternLayout
sessionDataChanged(Session) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPluginControl
sessionDataChanged(Session) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabVisualisationControl: Deprecated.
sessionDataChanged(Session) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation.NavigationComponentView
sessionDataChanged(Session) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.zoomfit.AlignNodesComponent
sessionDataChanged(Session) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.zoomfit.ZoomFitChangeComponent
sessionDataChanged(Session) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SelectNodesComponent
sessionDataChanged(Session) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.link_visualization_legend.LinkVisualizationLegendPlugin
sessionDataChanged(Session) - Method in class org.graffiti.editor.MainFrame: Invoked when the session data changed.
sessionDataChanged(Session) - Method in class org.graffiti.editor.StatusBar
sessionDataChanged(Session) - Method in class org.graffiti.plugin.inspector.SubtabHostTab
sessionDataChanged(Session) - Method in class org.graffiti.plugin.tool.AbstractUndoableTool: Empty method.
sessionDataChanged(Session) - Method in class org.graffiti.plugins.guis.switchselections.SelectionMenu
sessionDataChanged(Session) - Method in class org.graffiti.plugins.inspectors.defaults.AbstractTab
sessionDataChanged(Session) - Method in class org.graffiti.plugins.inspectors.defaults.EdgeTab
sessionDataChanged(Session) - Method in class org.graffiti.plugins.inspectors.defaults.Inspector: This method is called when the session data (but not the session's graph data) changed.
sessionDataChanged(Session) - Method in class org.graffiti.plugins.modes.defaults.MegaTools: Called when the session data (not the session's graph data!) changed.
sessionDataChanged(Session) - Method in class org.graffiti.plugins.tools.enhancedzoomtool.ZoomChangeComponent
sessionDataChanged(Session) - Method in class org.graffiti.plugins.tools.zoomtool.ZoomChangeComponent: Deprecated.
sessionDataChanged(Session) - Method in class org.graffiti.session.SessionAdapter
sessionDataChanged(Session) - Method in class org.graffiti.session.SessionAdapterExt
sessionDataChanged(Session) - Method in interface org.graffiti.session.SessionListener: This method is called when the data (except the graph data) are changed.
sessionDataChanged(Session) - Method in class org.graffiti.util.DesktopMenuManager
sessionDataChanged(Session) - Method in class org.vanted.plugins.layout.stressminimization.BackgroundExecutionAlgorithm
sessionDataChanged(Session) - Method in class org.vanted.plugins.layout.stressminimization.parameters.LandmarkSliderComponent
SessionLinkInfo - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references
SessionLinkInfo(Graph) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.SessionLinkInfo
SessionLinkInfo(EditorSession) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.SessionLinkInfo
SessionListener - Interface in org.graffiti.session: Interface for all who want to be noticed when the session changes.
SessionListenerExt - Interface in org.graffiti.session
SessionManager - Interface in org.graffiti.session: Manages the session objects.
set(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.FinalBoolean
set(int, SubstanceInterface) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment
set(int, SubstanceInterface) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface
setA(double) - Method in class org.color.Color_CIE_Lab
SetAbleBoolean - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe
SetAbleBoolean(boolean) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.SetAbleBoolean
setAbort(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsAccessAdapter
setAbortWanted(boolean) - Method in class org.graffiti.plugin.algorithm.ThreadSafeOptions: Use this call to indicate that the plugin should stop it work
setAbsHor(double) - Method in class org.graffiti.graphics.EdgeLabelPositionAttribute: Sets the absHor.
setAbsVert(double) - Method in class org.graffiti.graphics.EdgeLabelPositionAttribute: Sets the absVert.
setActionEvent(ActionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping.DataMapping
setActionEvent(ActionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate.RotateAlgorithm
setActionEvent(ActionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph.ApplyGraphLayout
setActionEvent(ActionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache.PatternSpringembedder
setActionEvent(ActionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder
setActionEvent(ActionEvent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder3d
setActionEvent(ActionEvent) - Method in class org.graffiti.plugin.algorithm.AbstractAlgorithm
setActionEvent(ActionEvent) - Method in interface org.graffiti.plugin.algorithm.Algorithm
setActionEvent(ActionEvent) - Method in class org.vanted.plugins.layout.multilevelframework.ForceDirectedLayoutWrapper
setActionEvent(ActionEvent) - Method in class org.vanted.plugins.layout.multilevelframework.MultilevelFrameworkLayout
setActionEvent(ActionEvent) - Method in class org.vanted.plugins.layout.stressminimization.BackgroundExecutionAlgorithm
setActiveDirectoryFor(JFileChooser) - Static method in class org.OpenFileDialogService
setActiveDirectoryFrom(File) - Static method in class org.OpenFileDialogService
setActiveSelection(String) - Method in class org.graffiti.selection.SelectionModel: Sets the active selection to the given value.
setActiveSelection(Selection) - Method in class org.graffiti.selection.SelectionModel: Sets the active selection to the given value.
setActiveSession(Session) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.printer.PrintAlgorithm: Sets the active session.
setActiveSession(Session, View) - Method in class org.graffiti.editor.MainFrame: Sets the current active session.
setActiveView(View) - Method in class org.graffiti.session.Session: Sets the activeView.
setAdapter(BiomodelsAccessAdapter) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.BiomodelsPanel: Set the BiomodelsAccessAdapter.
setAdded(boolean) - Method in class org.graffiti.selection.SelectionEvent: Sets the added.
setAddon(boolean) - Method in class org.graffiti.managers.pluginmgr.PluginDescription
setAdjustForDaylightSaving(boolean) - Method in class org.jfree.chart.axis.SegmentedTimeline: Sets the flag that controls whether or not the daylight saving adjustment is applied.
setAdvanceLinePaint(Paint) - Method in class org.jfree.chart.axis.CyclicNumberAxis: The advance line is the line drawn at the limit of the current cycle, when erasing the previous cycle.
setAdvanceLineStroke(Stroke) - Method in class org.jfree.chart.axis.CyclicNumberAxis: The advance line is the line drawn at the limit of the current cycle, when erasing the previous cycle.
setAdvanceLineVisible(boolean) - Method in class org.jfree.chart.axis.CyclicNumberAxis: The advance line is the line drawn at the limit of the current cycle, when erasing the previous cycle.
setAffyHit(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
setAffyHit(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
setAlgorithm(Algorithm) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.services.HandlesAlgorithmData
setAlgorithm(Algorithm) - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.RunAlgorithmDialog
setAlgorithm(Algorithm, Algorithm) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.MyClusterGraphBasedReLayoutService
setAlignment(String) - Method in class org.graffiti.graphics.LabelAttribute
setAlignSegment(int) - Method in class org.graffiti.graphics.EdgeLabelPositionAttribute: Sets the alignSegment.
setAllocatedY(double) - Method in class org.jfree.chart.plot.PieLabelRecord: Sets the allocated y-coordinate.
setAllowNegativesFlag(boolean) - Method in class org.jfree.chart.axis.LogarithmicAxis: Sets the 'allowNegativesFlag' flag; true to allow negative values in data, false to be able to plot positive values arbitrarily close to zero.
setAllowOverlap(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.NaivePatternFinderAlgorithm
setAlpha(float) - Method in class org.graffiti.plugin.view.AttributeComponent
setAlpha(float) - Method in class org.jfree.chart.plot.Marker: Sets the alpha transparency.
setAnchor(int) - Method in class org.jfree.chart.Legend: Sets the current anchor of this legend.
setAnchor(Point2D) - Method in class org.jfree.chart.plot.CrosshairState: Sets the anchor point.
setAnchorValue(double) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the anchor value.
setAnchorValue(double, boolean) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the anchor value.
setAngle(double) - Method in class org.jfree.chart.annotations.XYPointerAnnotation: Sets the angle.
setAngleGridlinePaint(Paint) - Method in class org.jfree.chart.plot.PolarPlot: Sets the paint for the grid lines plotted against the angular axis.
setAngleGridlineStroke(Stroke) - Method in class org.jfree.chart.plot.PolarPlot: Sets the stroke for the grid lines plotted against the angular axis.
setAngleGridlinesVisible(boolean) - Method in class org.jfree.chart.plot.PolarPlot: Sets the flag that controls whether or not the angular grid-lines are visible.
setAngleLabelFont(Font) - Method in class org.jfree.chart.plot.PolarPlot: Sets the font used to display the angle labels and sends a PlotChangeEvent to all registered listeners.
setAngleLabelPaint(Paint) - Method in class org.jfree.chart.plot.PolarPlot: Sets the paint used to display the angle labels and sends a PlotChangeEvent to all registered listeners.
setAngleLabelsVisible(boolean) - Method in class org.jfree.chart.plot.PolarPlot: Sets the flag that controls whether or not the angle labels are visible, and sends a PlotChangeEvent to all registered listeners.
setAnnotation(ExperimentDataAnnotation) - Method in class de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoaderInstance
setAnnotation(ExperimentDataAnnotation) - Method in interface de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoaderInterface
setAnnotation(Node, Annotation) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.KineticLawHelper
setAnnotation(Node, Annotation) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter
setAnnotation(Node, Annotation) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setAnnotation(Node, Annotation) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper
setAnnotation(Annotation) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLAlgebraicRule
setAnnotation(Annotation) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLAssignmentRule
setAnnotation(Annotation) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartment
setAnnotation(Annotation) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLConstraint
setAnnotation(Annotation) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventAssignmentHelper
setAnnotation(Annotation) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
setAnnotation(Annotation) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLFunctionDefinition
setAnnotation(Annotation) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLInitialAssignment
setAnnotation(Annotation) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLParameter
setAnnotation(Annotation) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLRateRule
setAnnotation(Annotation) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLUnit
setAnnotation(Annotation) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLUnitDefinition
setAnnotationCounter(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataInfoPane
setAnnotationModifier(Edge, Annotation) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setAnnotationProduct(Edge, Annotation) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setAnnotationReactant(Edge, Annotation) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setAntiAlias(boolean) - Method in class org.jfree.chart.JFreeChart: Sets a flag that indicates whether or not anti-aliasing is used when the chart is drawn.
setAppLoadingCompleted(ApplicationStatus) - Static method in class org.ErrorMsg
setArea(Shape) - Method in class org.jfree.chart.entity.ChartEntity: Sets the area for the entity.
setArrowhead(String) - Method in class org.graffiti.graphics.EdgeGraphicAttribute: Sets the 'arrowhead'-value.
setArrowhead(Edge, boolean) - Static method in class org.AttributeHelper
setArrowhead(Edge, String) - Static method in class org.AttributeHelper
setArrowLength(double) - Method in class org.jfree.chart.annotations.XYPointerAnnotation: Sets the arrow length.
setArrowPaint(Paint) - Method in class org.jfree.chart.annotations.XYPointerAnnotation: Sets the paint used for the arrow.
setArrowSize(Edge, double) - Static method in class org.AttributeHelper
setArrowStroke(Stroke) - Method in class org.jfree.chart.annotations.XYPointerAnnotation: Sets the stroke used to draw the arrow line.
setArrowtail(String) - Method in class org.graffiti.graphics.EdgeGraphicAttribute: Sets the 'arrowtail'-value.
setArrowtail(Edge, boolean) - Static method in class org.AttributeHelper: Assign a arrow shape in the opposite direction.of an edge.
setArrowtail(Edge, String) - Static method in class org.AttributeHelper
setArrowWidth(double) - Method in class org.jfree.chart.annotations.XYPointerAnnotation: Sets the arrow width.
setArtifactPaint(Paint) - Method in class org.jfree.chart.renderer.BoxAndWhiskerRenderer: Sets the paint used to color the median and average markers.
setArtifactPaint(Paint) - Method in class org.jfree.chart.renderer.XYBoxAndWhiskerRenderer: Sets the paint used to paint the various artifacts such as outliers, farout symbol, median line and the averages ellipse.
setAskBeforeOverwrite(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithm
setAttribut(int, String) - Method in class qmwi.kseg.som.diagram.ClassesObject: Insert the method's description here.
setAttribut(int, AttributsAttribut) - Method in class qmwi.kseg.som.diagram.AttributsClass: Insert the method's description here.
setAttributable(Attributable) - Method in class org.graffiti.attributes.AbstractCollectionAttribute: Sets the Attribute's Attributable.
setAttributable(Attributable) - Method in interface org.graffiti.attributes.CollectionAttribute: Sets the attributable the Attribute belongs to.
setAttribute(String, Attribute) - Method in class org.graffiti.attributes.CompositeAttribute: Sets the given attribute to the given value.
setAttribute(String, Attribute) - Method in class org.graffiti.graphics.AWTImageAttribute
setAttribute(String, Attribute) - Method in class org.graffiti.graphics.LineModeAttribute
setAttribute(Attributable, String, String, Object) - Static method in class org.AttributeHelper: SetAttribute, sets or adds a attribute to the given Attributeable.
setAttribute(Attribute) - Method in class org.graffiti.plugin.attributecomponent.AbstractAttributeComponent: Sets an instance of attribute which this component displays.
setAttribute(Attribute) - Method in class org.graffiti.plugin.view.AttributeComponent: Sets an instance of attribute which this component displays.
setAttribute(Attribute) - Method in class org.graffiti.plugins.attributecomponents.simplelabel.LabelComponent: obvious
setAttribute(Attribute) - Method in class org.graffiti.plugins.inspectors.defaults.BooledAttribute: Sets the attribute.
setAttribute(Attribute) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
setAttribute(Attribute) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
setAttribute(Attribute) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment
setAttribute(Attribute) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MappingDataEntity
setAttribute(Attribute) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurement
setAttribute(Attribute) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurementInterface
setAttribute(Attribute) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample
setAttribute(Attribute) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverage
setAttribute(Attribute) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverageInterface
setAttribute(Attribute) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface
setAttribute(Attribute) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
setAttribute(Attribute) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
setAttributeClass(Class<? extends Attribute>) - Method in class org.graffiti.attributes.AttributeDescription
setAttributeComponentManager(AttributeComponentManager) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
setAttributeComponentManager(AttributeComponentManager) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
setAttributeComponentManager(AttributeComponentManager) - Method in class org.graffiti.plugin.view.AbstractView: Sets the AttributeComponentManager used by this view.
setAttributeComponentManager(AttributeComponentManager) - Method in interface org.graffiti.plugin.view.View: Sets the AttributeComponentManager used by this view.
setAttributeEvent(AttributeEvent) - Method in class org.graffiti.util.DelayThread
setAttributes(Node, Color, String, Point2D, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_SBase_Reader: Method helps to set Attributes Creates nodes with 20, 20 height/width
setAttributeTextField(Attributable, String, String, Object) - Static method in class org.AttributeHelper: setAttributeTextField
setAttributeTypes(Map) - Method in class org.graffiti.attributes.AttributeTypesManager: Sets the map of known Attribute types.
setAttributeValue(String, String, Object) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
setAttributeValue(GraphElement, double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.AttributePathNameSearchType
setAttributeValue(GraphElement, Color) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.AttributePathNameSearchType
setAttributs(String[]) - Method in class qmwi.kseg.som.diagram.ClassesObject: Insert the method's description here.
setAuthor(String) - Method in class org.graffiti.managers.pluginmgr.PluginDependency: Sets the author.
setAuthor(String) - Method in class org.graffiti.managers.pluginmgr.PluginDescription: Sets the author.
setAutoRange(boolean) - Method in class org.jfree.chart.axis.ValueAxis: Sets a flag that determines whether or not the axis range is automatically adjusted to fit the data, and notifies registered listeners that the axis has been modified.
setAutoRangeIncludesZero(boolean) - Method in class org.jfree.chart.axis.NumberAxis: Sets the flag that indicates whether or not the axis range, if automatically calculated, is forced to include zero.
setAutoRangeMinimumSize(double) - Method in class org.jfree.chart.axis.ValueAxis: Sets the auto range minimum size and sends an AxisChangeEvent to all registered listeners.
setAutoRangeMinimumSize(double, boolean) - Method in class org.jfree.chart.axis.CyclicNumberAxis: This function is nearly useless since the auto range is fixed for this class to the period The period is extended if necessary to fit the minimum size.
setAutoRangeMinimumSize(double, boolean) - Method in class org.jfree.chart.axis.ValueAxis: Sets the minimum size allowed for the axis range when it is automatically calculated.
setAutoRangeStickyZero(boolean) - Method in class org.jfree.chart.axis.NumberAxis: Sets a flag that affects the auto-range when zero falls outside the data range but inside the margins defined for the axis.
setAutoTickUnitSelection(boolean) - Method in class org.jfree.chart.axis.ValueAxis: Sets a flag indicating whether or not the tick unit is automatically selected from a range of standard tick units.
setAutoTickUnitSelection(boolean, boolean) - Method in class org.jfree.chart.axis.ValueAxis: Sets a flag indicating whether or not the tick unit is automatically selected from a range of standard tick units.
setAutoWidth(boolean) - Method in class org.jfree.data.CategoryTableXYDataset: Sets the flag that indicates wether the interval width is automatically calculated or not.
setAutoWidth(boolean) - Method in class org.jfree.data.DefaultTableXYDataset: Sets the flag that indicates wether the interval width is automatically calculated or not.
setAutoWidth(boolean) - Method in class org.jfree.data.XYSeriesCollection: Sets the flag that indicates wether the interval width is automatically calculated or not.
setAutoWidthFactor(double) - Method in class org.jfree.chart.renderer.CandlestickRenderer: Sets the factor by which the available space automatically calculated for the candles will be multiplied to determine the actual width to use.
setAutoWidthGap(double) - Method in class org.jfree.chart.renderer.CandlestickRenderer: Sets the amount of space to leave on the left and right of each candle when automatically calculating widths.
setAutoWidthMethod(int) - Method in class org.jfree.chart.renderer.CandlestickRenderer: Sets the method of automatically calculating the candle width.
setAvailable(String) - Method in class org.graffiti.managers.pluginmgr.PluginDependency: Sets the available.
setAvailable(String) - Method in class org.graffiti.managers.pluginmgr.PluginDescription: Sets the available.
setAveragedOutlier(Outlier) - Method in class org.jfree.chart.renderer.OutlierList: Sets the averaged outlier.
setAxis(ValueAxis) - Method in class org.jfree.chart.axis.ColorBar: Sets the axis.
setAxisLinePaint(Paint) - Method in class org.jfree.chart.axis.Axis: Sets the paint used to draw the axis line and sends an AxisChangeEvent to all registered listeners.
setAxisLineStroke(Stroke) - Method in class org.jfree.chart.axis.Axis: Sets the stroke used to draw the axis line and sends an AxisChangeEvent to all registered listeners.
setAxisLineVisible(boolean) - Method in class org.jfree.chart.axis.Axis: Sets a flag that controls whether or not the axis line is visible and sends an AxisChangeEvent to all registered listeners.
setAxisLocation(int) - Method in class org.jfree.chart.plot.ThermometerPlot: Sets the location at which the axis is displayed with reference to the bulb.
setAxisOffset(Spacer) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the axis offsets (gap between the data area and the axes).
setAxisOffset(Spacer) - Method in class org.jfree.chart.plot.XYPlot: Sets the axis offsets (gap between the data area and the axes).
setAxisProperties(Axis) - Method in class org.jfree.chart.ui.AxisPropertyEditPanel: Sets the properties of the specified axis to match the properties defined on this panel.
setAxisProperties(Axis) - Method in class org.jfree.chart.ui.ColorBarPropertyEditPanel: Sets the properties of the specified axis to match the properties defined on this panel.
setAxisProperties(ColorBar) - Method in class org.jfree.chart.ui.ColorBarPropertyEditPanel: Sets the properties of the specified axis to match the properties defined on this panel.
setB(double) - Method in class org.color.Color_CIE_Lab
setBackground(Color) - Method in class org.FolderPanel
setBackground(Color) - Method in class org.jfree.chart.plot.JThermometer: Sets the background color.
setBackgroundAlpha(float) - Method in class org.jfree.chart.plot.Plot: Sets the alpha transparency of the plot area background, and notifies registered listeners that the plot has been modified.
SetBackgroundColorAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color: DOCUMENT ME!
SetBackgroundColorAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color.SetBackgroundColorAlgorithm
SetBackgroundColorPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color
SetBackgroundColorPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.set_background_color.SetBackgroundColorPlugin
setBackgroundImage(Image) - Method in class org.jfree.chart.JFreeChart: Sets the background image for the chart and sends a ChartChangeEvent to all registered listeners.
setBackgroundImage(Image) - Method in class org.jfree.chart.plot.Plot: Sets the background image for the plot.
setBackgroundImage(ImageAttribute) - Method in class org.graffiti.graphics.GraphElementGraphicAttribute: Sets the 'backgroundimage'-value.
setBackgroundImageAlignment(int) - Method in class org.jfree.chart.JFreeChart: Sets the background alignment.
setBackgroundImageAlignment(int) - Method in class org.jfree.chart.plot.Plot: Sets the background alignment.
setBackgroundImageAlpha(float) - Method in class org.jfree.chart.JFreeChart: Sets the alpha-transparency for the chart's background image.
setBackgroundPaint(Paint) - Method in class org.jfree.chart.JFreeChart: Sets the paint used to fill the chart background and sends a ChartChangeEvent to all registered listeners.
setBackgroundPaint(Paint) - Method in class org.jfree.chart.plot.Plot: Sets the background color of the plot area and sends a PlotChangeEvent to all registered listeners.
setBackgroundPaint(Paint) - Method in class org.jfree.chart.StandardLegend: Sets the background paint for the legend and sends a LegendChangeEvent to all registered listeners.
setBackgroundPaint(Paint) - Method in class org.jfree.chart.title.TextTitle: Sets the background paint and sends a TitleChangeEvent to all registered listeners.
setBarWidth(double) - Method in class org.jfree.chart.renderer.CategoryItemRendererState: Sets the bar width.
setBaseAngle(Number) - Method in class org.jfree.chart.renderer.AbstractRenderer: Deprecated.
Use setBasePositiveItemLabelPosition()/setBaseNegativeItemLabelPosition().
setBaseItemLabelAnchor(ItemLabelAnchor) - Method in class org.jfree.chart.renderer.AbstractRenderer: Deprecated.
Use setBasePositiveItemLabelPosition()/setBaseNegativeItemLabelPosition().
setBaseItemLabelAnchor(ItemLabelAnchor) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Deprecated.
Use setBasePositiveItemLabelPosition() or setBaseNegativeItemLabelPosition().
setBaseItemLabelFont(Font) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the base item label font and sends a RendererChangeEvent to all registered listeners.
setBaseItemLabelFont(Font) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the base item label font and sends a RendererChangeEvent to all registered listeners.
setBaseItemLabelFont(Font) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the base item label font and sends a RendererChangeEvent to all registered listeners.
setBaseItemLabelFont(Font, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the base item label font and, if requested, sends a RendererChangeEvent to all registered listeners.
setBaseItemLabelPaint(Paint) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the base item label paint and sends a RendererChangeEvent to all registered listeners.
setBaseItemLabelPaint(Paint) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the base item label paint and sends a RendererChangeEvent to all registered listeners.
setBaseItemLabelPaint(Paint) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the base item label paint and sends a RendererChangeEvent to all registered listeners.
setBaseItemLabelPaint(Paint, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the base item label paint and, if requested, sends a RendererChangeEvent to all registered listeners..
setBaseItemLabelRotationAnchor(TextAnchor) - Method in class org.jfree.chart.renderer.AbstractRenderer: Deprecated.
Use setBasePositiveItemLabelPosition()/setBaseNegativeItemLabelPosition().
setBaseItemLabelsVisible(boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the base flag that controls whether or not item labels are visible.
setBaseItemLabelsVisible(boolean) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the base flag that controls whether or not item labels are visible.
setBaseItemLabelsVisible(boolean) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the base flag that controls whether or not item labels are visible.
setBaseItemLabelsVisible(Boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the base setting for item label visibility.
setBaseItemLabelsVisible(Boolean) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the base setting for item label visibility.
setBaseItemLabelsVisible(Boolean) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the base setting for item label visibility.
setBaseItemLabelsVisible(Boolean, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the base visibility for item labels and, if requested, sends a RendererChangeEvent to all registered listeners.
setBaseItemLabelsVisible(Boolean, boolean) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the base visibility for item labels and, if requested, sends a RendererChangeEvent to all registered listeners.
setBaseItemLabelsVisible(Boolean, boolean) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the base visibility for item labels and, if requested, sends a RendererChangeEvent to all registered listeners.
setBaseItemLabelTextAnchor(TextAnchor) - Method in class org.jfree.chart.renderer.AbstractRenderer: Deprecated.
Use setBasePositiveItemLabelPosition()/setBaseNegativeItemLabelPosition().
setBaseItemLabelTextAnchor(TextAnchor) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Deprecated.
Use setBasePositiveItemLabelPosition() or setBaseNegativeItemLabelPosition().
setBaseItemURLGenerator(CategoryURLGenerator) - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer: Sets the base item URL generator.
setBaseItemURLGenerator(CategoryURLGenerator) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the base item URL generator.
setBaseLabelGenerator(CategoryLabelGenerator) - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer: Sets the base label generator and sends a RendererChangeEvent to all registered listeners.
setBaseLabelGenerator(CategoryLabelGenerator) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the base label generator and sends a RendererChangeEvent to all registered listeners.
setBaseLabelGenerator(XYLabelGenerator) - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer: Sets the base item label generator and sends a RendererChangeEvent to all registered listeners.
setBaseLabelGenerator(XYLabelGenerator) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the base item label generator and sends a RendererChangeEvent to all registered listeners.
setBaseNegativeItemLabelPosition(ItemLabelPosition) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the base item label position for negative values and sends a RendererChangeEvent to all registered listeners.
setBaseNegativeItemLabelPosition(ItemLabelPosition) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the base item label position for negative values and sends a RendererChangeEvent to all registered listeners.
setBaseNegativeItemLabelPosition(ItemLabelPosition) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the base item label position for negative values and sends a RendererChangeEvent to all registered listeners.
setBaseNegativeItemLabelPosition(ItemLabelPosition, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the base negative item label position and, if requested, sends a RendererChangeEvent to all registered listeners.
setBaseNegativeItemLabelPosition(ItemLabelPosition, boolean) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the base negative item label position and, if requested, sends a RendererChangeEvent to all registered listeners.
setBaseNegativeItemLabelPosition(ItemLabelPosition, boolean) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the base negative item label position and, if requested, sends a RendererChangeEvent to all registered listeners.
setBaseOutlinePaint(Paint) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the base outline paint and sends a RendererChangeEvent to all registered listeners.
setBaseOutlinePaint(Paint) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the base outline paint and sends a RendererChangeEvent to all registered listeners.
setBaseOutlinePaint(Paint) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the base outline paint and sends a RendererChangeEvent to all registered listeners.
setBaseOutlinePaint(Paint, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the base outline paint and, if requested, sends a RendererChangeEvent to all registered listeners.
setBaseOutlineStroke(Stroke) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the base outline stroke and sends a RendererChangeEvent to all registered listeners.
setBaseOutlineStroke(Stroke) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the base outline stroke and sends a RendererChangeEvent to all registered listeners.
setBaseOutlineStroke(Stroke) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the base outline stroke and sends a RendererChangeEvent to all registered listeners.
setBaseOutlineStroke(Stroke, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the base outline stroke and, if requested, sends a RendererChangeEvent to all registered listeners.
setBasePaint(Paint) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the base paint and sends a RendererChangeEvent to all registered listeners.
setBasePaint(Paint) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the base paint and sends a RendererChangeEvent to all registered listeners.
setBasePaint(Paint) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the base paint and sends a RendererChangeEvent to all registered listeners.
setBasePaint(Paint, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the base paint and, if requested, sends a RendererChangeEvent to all registered listeners.
setBasePositiveItemLabelPosition(ItemLabelPosition) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the base positive item label position.
setBasePositiveItemLabelPosition(ItemLabelPosition) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the base positive item label position.
setBasePositiveItemLabelPosition(ItemLabelPosition) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the base positive item label position.
setBasePositiveItemLabelPosition(ItemLabelPosition, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the base positive item label position and, if requested, sends a RendererChangeEvent to all registered listeners.
setBasePositiveItemLabelPosition(ItemLabelPosition, boolean) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the base positive item label position and, if requested, sends a RendererChangeEvent to all registered listeners.
setBasePositiveItemLabelPosition(ItemLabelPosition, boolean) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the base positive item label position and, if requested, sends a RendererChangeEvent to all registered listeners.
setBaseRadius(double) - Method in class org.jfree.chart.annotations.XYPointerAnnotation: Sets the base radius.
setBaseSectionOutlinePaint(Paint) - Method in class org.jfree.chart.plot.PiePlot: Sets the base section paint.
setBaseSectionOutlineStroke(Stroke) - Method in class org.jfree.chart.plot.PiePlot: Sets the base section stroke.
setBaseSectionPaint(Paint) - Method in class org.jfree.chart.plot.PiePlot: Sets the base section paint.
setBaseShape(Shape) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the base shape and sends a RendererChangeEvent to all registered listeners.
setBaseShape(Shape) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the base shape and sends a RendererChangeEvent to all registered listeners.
setBaseShape(Shape) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the base shape and sends a RendererChangeEvent to all registered listeners.
setBaseShape(Shape, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the base shape and, if requested, sends a RendererChangeEvent to all registered listeners.
setBaseStroke(Stroke) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the base stroke.
setBaseStroke(Stroke) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the base stroke.
setBaseStroke(Stroke) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the base stroke.
setBaseStroke(Stroke, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the base stroke and, if requested, sends a RendererChangeEvent to all registered listeners.
setBaseTimeline(SegmentedTimeline) - Method in class org.jfree.chart.axis.SegmentedTimeline: Sets the base timeline.
setBaseToolTipGenerator(CategoryToolTipGenerator) - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer: Sets the base tool tip generator and sends a RendererChangeEvent to all registered listeners.
setBaseToolTipGenerator(CategoryToolTipGenerator) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the base tool tip generator and sends a RendererChangeEvent to all registered listeners.
setBaseToolTipGenerator(XYToolTipGenerator) - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer: Sets the base tool tip generator and sends a RendererChangeEvent to all registered listeners.
setBaseToolTipGenerator(XYToolTipGenerator) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the base tool tip generator and sends a RendererChangeEvent to all registered listeners.
setBaseUrl(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.web.RestService
setBaseY(double) - Method in class org.jfree.chart.plot.PieLabelRecord: Sets the base y-coordinate.
setBends(SortedCollectionAttribute) - Method in class org.graffiti.graphics.EdgeGraphicAttribute: Sets the 'bends'-value.
setBetaAndGamma(double, double) - Method in class qmwi.kseg.som.DataSet
setBfsNum(HashMap<Node, Integer>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.TreeContainer
setBGcolor(Color) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Graphics
setBlockEdges(boolean) - Method in class org.graffiti.plugins.views.defaults.GraffitiView: Disable edge component creation.
setBlue(int) - Method in class org.graffiti.graphics.ColorAttribute: Sets the 'blue'-value.
setBool(boolean) - Method in class org.graffiti.plugins.inspectors.defaults.BooledAttribute: Sets the bool.
setBoolean(boolean) - Method in class org.graffiti.attributes.BooleanAttribute: Sets the value of this object.
setBoolean(String, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
setBoolean(String, boolean) - Method in class org.graffiti.attributes.AbstractAttributable: Sets the Attribute at the given path to the given value.
setBoolean(String, boolean) - Method in interface org.graffiti.attributes.Attributable: Sets the Attribute at the given path to the given value.
setBorderColor(Color) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
setBorderColor(Color) - Method in class org.graffiti.plugins.attributecomponents.simplelabel.ViewLabel
setBorderPaint(Paint) - Method in class org.jfree.chart.JFreeChart: Sets the paint used to draw the chart border (if visible).
setBorderStroke(Stroke) - Method in class org.jfree.chart.JFreeChart: Sets the stroke used to draw the chart border (if visible).
setBorderType(int) - Method in class org.jfree.data.DefaultMeterDataset: Deprecated.

Sets the border type.
setBorderVisible(boolean) - Method in class org.jfree.chart.JFreeChart: Sets a flag that controls whether or not a border is drawn around the outside of the chart.
setBorderWidth(double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
setBorderWidth(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams
setBorderWidth(Edge, double) - Static method in class org.AttributeHelper
setBorderWidth(GraphElement, double) - Static method in class org.AttributeHelper
setBorderWidth(Node, double) - Static method in class org.AttributeHelper
setBottom(double) - Method in class org.jfree.chart.axis.AxisSpace: Sets the bottom space.
setBottomCategoryLabelPosition(CategoryLabelPosition) - Method in class org.jfree.chart.axis.CategoryAxis: Deprecated.
Use setCategoryLabelPositions(...).
setBoundaryConsition(Node, Boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper: Sets the attribute boundary condition of a species node
setBoundingBoxArcHeight(int) - Method in class org.jfree.chart.StandardLegend: Sets the height of the arc used to round off the corners of the bounding box.
setBoundingBoxArcWidth(int) - Method in class org.jfree.chart.StandardLegend: Sets the width of the arc used to round off the corners of the bounding box.
setBoundMappedToLastCycle(boolean) - Method in class org.jfree.chart.axis.CyclicNumberAxis: The cycle bound can be associated either with the current or with the last cycle.
setBounds(double, double, double, double) - Method in class org.jfree.chart.DrawableLegendItem: Set the bounds of this item.
setBounds(int, int, int, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.JTreeTable.TreeTableCellRenderer
setBoxWidth(double) - Method in class org.jfree.chart.renderer.XYBoxAndWhiskerRenderer: Sets the box width.
setBuf(byte[]) - Method in class org.graffiti.plugin.io.resources.MyByteArrayOutputStream
setBval(int, boolean) - Method in class org.graffiti.plugin.algorithm.ThreadSafeOptions: Sets a boolean Parameter with a given Index index and a given value.
setByte(byte) - Method in class org.graffiti.attributes.ByteAttribute: Set the value of this Object.
setByte(String, byte) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
setByte(String, byte) - Method in class org.graffiti.attributes.AbstractAttributable: Sets the Attribute at the given path to the given value.
setByte(String, byte) - Method in interface org.graffiti.attributes.Attributable: Sets the Attribute at the given path to the given value.
setC(Double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionDatapoint
setCalculationHistoryForMaxR(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.CorrelationResult
setCallBack(MyReactionList) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.reaction_gui.CompoundListEditor
setCallBack(MyReactionList) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.reaction_gui.ReactionIdEditor
setCallBack(MyReactionList) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.reaction_gui.ReactionTypeSelection
setCallBack(MyRelationList) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.relation_gui.RelationTypeEditor
setCallBack(MyRelationList) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.relation_gui.SrcTargetEditor
setCallBack(MyRelationList) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.relation_gui.SubComponentNameCheckBox
setCallBack(MyRelationList) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.relation_gui.SubComponentTypesEditor
setCallBack(MyRelationList) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.relation_gui.SubtypeCompoundEditor
setCandleWidth(double) - Method in class org.jfree.chart.renderer.CandlestickRenderer: Sets the candle width.
setCategory(Comparable) - Method in class org.jfree.chart.annotations.CategoryTextAnnotation: Sets the category that the annotation attaches to.
setCategory(Object) - Method in class org.jfree.chart.entity.CategoryItemEntity: Sets the category.
setCategoryAnchor(CategoryAnchor) - Method in class org.jfree.chart.annotations.CategoryTextAnnotation: Sets the category anchor point.
setCategoryBackgroundPaint(Color) - Method in class org.jfree.chart.plot.CategoryPlot
setCategoryBackgroundPaintA(int, Color) - Method in class org.jfree.chart.plot.CategoryPlot
setCategoryBackgroundPaintC(int, Color) - Method in class org.jfree.chart.plot.CategoryPlot
setCategoryIndex(int) - Method in class org.jfree.chart.entity.CategoryItemEntity: Sets the category index.
setCategoryKeys(Comparable[]) - Method in class org.jfree.data.DefaultIntervalCategoryDataset: Sets the categories for the dataset.
setCategoryLabelPositionOffset(int) - Method in class org.jfree.chart.axis.CategoryAxis: Sets the offset between the axis and the category labels (before label positioning is taken into account).
setCategoryLabelPositions(CategoryLabelPositions) - Method in class org.jfree.chart.axis.CategoryAxis: Sets the category label position specification for the axis and sends an AxisChangeEvent to all registered listeners.
setCategoryMargin(double) - Method in class org.jfree.chart.axis.CategoryAxis: Sets the category margin and sends an AxisChangeEvent to all registered listeners.
setCenter(List<Node>, Vector2d) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools
setCharge(Node, Integer) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper: Sets the deprecated attribute charge of a species node
setChart(JFreeChart) - Method in class org.jfree.chart.ChartPanel: Sets the chart that is displayed in the panel.
setChart(JFreeChart) - Method in class org.jfree.chart.event.ChartChangeEvent: Sets the chart that generated the change event.
setChart(JFreeChart) - Method in class org.jfree.chart.event.ChartProgressEvent: Sets the chart that generated the change event.
setChart(JFreeChart) - Method in class org.jfree.chart.PolarChartPanel: Sets the chart that is displayed in the panel.
setChartArea(Rectangle2D) - Method in class org.jfree.chart.ChartRenderingInfo: Sets the area in which the chart was drawn.
setChartRange(double, double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper: Shortcut method to modify the range axis minimum and maximum value.
setChartSettingUseCustomRange(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper: Shortcut method to enable or disable the display of a custom range.
setChartType(GraffitiCharts) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
setCheckThis(ThreadSafeOptions) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.DebugSelectionCheck
setChipSpace(double) - Method in class org.jfree.data.WaferMapDataset: Sets the space to draw between chips.
setCircular(boolean) - Method in class org.jfree.chart.plot.PiePlot: A flag indicating whether the pie chart is circular, or stretched into an elliptical shape.
setCircular(boolean, boolean) - Method in class org.jfree.chart.plot.PiePlot: Sets the circular attribute and, if requested, sends a PlotChangeEvent to all registered listeners.
setClass(int, ClassesClass) - Method in class qmwi.kseg.som.diagram.ClassesAll: Insert the method's description here.
setClassIndex(int) - Method in class qmwi.kseg.som.diagram.ClassesObjectInputVector: Insert the method's description here.
setClassLoader(ClassLoader) - Static method in class org.graffiti.util.InstanceLoader
setClip(boolean) - Method in class org.jfree.chart.ClipPath: Sets the clip.
setClipPath(ClipPath) - Method in class org.jfree.chart.plot.ContourPlot: Sets the clipPath.
setClipX(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams
setClipY(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams
setClosing() - Method in class org.graffiti.session.EditorSession: Sets the closing state of this session.
setCluster(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.GraphElementHelper
setClusterColor(int, Color) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttribute
setClusterGraphNodeSizeAndPositionFromReferenceGraph(Graph, Graph, BackgroundTaskStatusProviderSupportingExternalCall) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelper
setClusterId(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
setClusterId(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
setClusterID(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
setClusterID(GraphElement, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools
SetClusterInfoAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands
SetClusterInfoAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SetClusterInfoAlgorithm
SetClusterInfoFromLabelAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands
SetClusterInfoFromLabelAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SetClusterInfoFromLabelAlgorithm
SetClusterInfoFromSubgraphAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands
SetClusterInfoFromSubgraphAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SetClusterInfoFromSubgraphAlgorithm
SetClusterLaunchGui - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands
SetClusterLaunchGui() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SetClusterLaunchGui
setClusterOutlineColor(int, Color) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttribute
setCollection(Map<String, Attribute>) - Method in interface org.graffiti.attributes.CollectionAttribute: Sets the collection of attributes contained within this CollectionAttribute
setCollection(Map<String, Attribute>) - Method in class org.graffiti.attributes.HashMapAttribute: Sets the collection of attributes contained within this CollectionAttribute For each entry in the map, pre- and post- AttributeAdded events are generated since method add(Attribute a) is called for each attribute in the map.
setCollection(Map<String, Attribute>) - Method in class org.graffiti.attributes.LinkedHashMapAttribute: Sets the collection of attributes contained within this CollectionAttribute For each entry in the map, pre- and post- AttributeAdded events are generated since method add(Attribute a) is called for each attribute in the map.
setCollection(Map<String, Attribute>) - Method in class org.graffiti.graphics.ColorAttribute: Sets the collection of attributes contained within this CollectionAttribute.
setCollection(Map<String, Attribute>) - Method in class org.graffiti.graphics.CoordinateAttribute: Sets the collection of attributes contained within this CollectionAttribute.
setCollection(Map<String, Attribute>) - Method in class org.graffiti.graphics.DimensionAttribute: Sets the collection of attributes contained within this CollectionAttribute.
setCollection(Map<String, Attribute>) - Method in class org.graffiti.graphics.DockingAttribute: Sets the collection of attributes contained within this CollectionAttribute.
setCollection(Map<String, Attribute>) - Method in class org.graffiti.graphics.EdgeGraphicAttribute: Sets the collection of attributes contained within this CollectionAttribute
setCollection(Map<String, Attribute>) - Method in class org.graffiti.graphics.EdgeLabelPositionAttribute: Sets the collection of attributes contained within this CollectionAttribute
setCollection(Map<String, Attribute>) - Method in class org.graffiti.graphics.ImageAttribute: Sets the collection of attributes contained within this CollectionAttribute
setCollection(Map<String, Attribute>) - Method in class org.graffiti.graphics.NodeGraphicAttribute: Sets the collection of attributes contained within this CollectionAttribute.
setCollection(Map<String, Attribute>) - Method in class org.graffiti.graphics.NodeLabelPositionAttribute: Sets the collection of attributes contained within this CollectionAttribute
setCollection(Map<String, Attribute>) - Method in class org.graffiti.graphics.PortAttribute: Sets the collection of attributes contained within this CollectionAttribute
setCollection(Map<String, Attribute>) - Method in class org.graffiti.graphics.PortsAttribute: Sets the collection of attributes contained within this CollectionAttribute
setCollection(Map<String, Attribute>) - Method in class org.graffiti.graphics.PositionAttribute: Sets the collection of attributes contained within this CollectionAttribute
setColor(Color) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_color.LabelColorAttribute
setColor(Color) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttribute
setColor(Color) - Method in interface org.graffiti.attributes.ColorSetAndGetSupport
setColor(Color) - Method in class org.graffiti.graphics.ColorAttribute: Comfort function to set a java.awt.Color.
setColor(Color) - Method in class org.vanted.animation.data.ColorTimePoint
setColor1For(String, Color) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ColorHelper
setColorBarAxis(ColorBar) - Method in class org.jfree.chart.plot.ContourPlot: Sets the colorbar for the plot.
setColorBarLocation(RectangleEdge) - Method in class org.jfree.chart.plot.ContourPlot: Sets the color bar location and sends a PlotChangeEvent to all registered listeners.
setColorEnzymesAndUseReferencePathway(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggPathwayEntry
setColorFromAttribute(Attributable, String, String, Color) - Static method in class org.AttributeHelper
setColorPalette(ColorPalette) - Method in class org.jfree.chart.axis.ColorBar: Sets the color palette.
setColumn(double[]) - Method in class info.clearthought.layout.TableLayout: Adjusts the number and sizes of rows in this layout.
setColumn(int, double) - Method in class info.clearthought.layout.TableLayout: Adjusts the width of a single column in this layout.
setColumnNames() - Method in class qmwi.kseg.som.diagram.DiagrammPaneData: Insert the method's description here.
setColumnNames(HashMap<Integer, String>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.XlsTableModel
setColumnRenderingOrder(SortOrder) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the order in which the columns should be rendered.
setColumns(String[]) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMplugin
setColumnStyle(double, double) - Method in class org.FolderPanel
setCommon(CollectionAttribute) - Method in class org.graffiti.graphics.PortsAttribute: Sets the 'common'-value.
setCommonPath(String) - Method in enum org.graffiti.event.PathComparisonResult
setCommonPorts(List) - Method in class org.graffiti.graphics.PortsAttribute: DOCUMENT ME!
setCompartment(Node, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setCompartment(Node, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper: Sets the compartment of a node
setCompartmentName(Node) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper
setCompatibleVersion(String) - Method in class org.graffiti.managers.pluginmgr.PluginDescription: Sets the version for compatibility.
setCompletePaint(Paint) - Method in class org.jfree.chart.renderer.GanttRenderer: Sets the paint used to show the percentage complete and sends a RendererChangeEvent to all registered listeners.
setComponent(JComponent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.AbstractExperimentDataProcessor
setComponent(JComponent) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataProcessor
setComponent(JComponent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.PutIntoSidePanel
setComponentZorder(JDesktopPane, JInternalFrame) - Static method in class org.Java_1_5_compatibility_impl
setComponentZorder(JDesktopPane, JInternalFrame) - Static method in class org.Java_1_5_compatibility
setComposedSubUnit(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLUnit
setComposedUnit(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLUnit
setComposite(Composite) - Method in class org.jfree.chart.ClipPath: Sets the composite.
setCondensedState(boolean) - Method in class org.FolderPanel
setCondgenotype(LinkedHashSet<String>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation
setConditionID(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DataRowExcelExport
setCondspecies(LinkedHashSet<String>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation
setCondtreatment(LinkedHashSet<String>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation
setConnectPriorItems(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyLineAndShapeRenderer
setConstant(Boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartment
setConstant(Boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLParameter
setConstant(Edge, Boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setConstant(Node, Boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper: Sets the attribute constant of a species node
setConstraints(Component, TableLayoutConstraints) - Method in class info.clearthought.layout.TableLayout: Sets the constraints of a given component.
setControlInterface(ThreadSafeOptions, JComponent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate.RotateAlgorithm
setControlInterface(ThreadSafeOptions, JComponent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache.PatternSpringembedder
setControlInterface(ThreadSafeOptions, JComponent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder
setControlInterface(ThreadSafeOptions, JComponent) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder3d
setControlInterface(ThreadSafeOptions, JComponent) - Method in class org.graffiti.plugin.algorithm.ThreadSafeAlgorithm: DOCUMENT ME!
setControlInterface(ThreadSafeOptions, JComponent) - Method in class org.vanted.plugins.layout.multilevelframework.ForceDirectedLayoutWrapper
setControlInterface(ThreadSafeOptions, JComponent) - Method in class org.vanted.plugins.layout.multilevelframework.MultilevelFrameworkLayout
setControlInterface(ThreadSafeOptions, JComponent) - Method in class org.vanted.plugins.layout.stressminimization.BackgroundExecutionAlgorithm: See readme for context
setConversionFactor(Node, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper: Sets the attribute conversion factor of a species node
setCoordinate(double, double) - Method in class org.graffiti.graphics.CoordinateAttribute
setCoordinate(Point2D) - Method in class org.graffiti.graphics.CoordinateAttribute: Sets the x and y values of this coordinate to the given points' values.
setCoordinate(CoordinateAttribute) - Method in class org.graffiti.graphics.NodeGraphicAttribute: Sets the 'coordinate'-value.
setCoordinate(CoordinateAttribute) - Method in class org.graffiti.graphics.PortAttribute: Sets the 'port'-value.
setCoordinates(List) - Method in class org.graffiti.graphics.ShapeDescriptionAttribute: Replaces potentially existing coordinate attributes with the new given ones.
setCoordinateSystem(CoordinateSystem) - Method in interface org.graffiti.plugin.view.GraphElementShape
setCoordinateSystem(CoordinateSystem) - Method in class org.graffiti.plugins.views.defaults.PolyLineEdgeShape
setCoordinateSystem(CoordinateSystem) - Method in class org.graffiti.plugins.views.defaults.RectangularNodeShape
setCoordinateSystem(CoordinateSystem) - Method in class org.graffiti.plugins.views.defaults.StraightLineEdgeShape
setCoordinator(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader
setCoordinator(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface
setCoordinator(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataFileReader
setCreateHTMLmap(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams
setCreateJPG(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams
setCriticalPaint(Paint) - Method in class org.jfree.chart.plot.MeterPlot: Sets the paint used to display the 'critical' range.
setCriticalRange(Number, Number) - Method in class org.jfree.data.DefaultMeterDataset: Deprecated.

Sets the critical range for the dataset.
setCriticalRange(Range) - Method in class org.jfree.chart.plot.MeterPlot: Sets the critical range for the dial.
setCrosshairDistance(double) - Method in class org.jfree.chart.plot.CrosshairState: Sets the distance between the anchor point and the current crosshair point.
setCrosshairX(double) - Method in class org.jfree.chart.plot.CrosshairState: Sets the x coordinate for the crosshair.
setCrosshairY(double) - Method in class org.jfree.chart.plot.CrosshairState: Sets the y coordinate for the crosshair.
setCurrentMessage(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings.PluginStatusInfo
setCurrentPage(int) - Method in class org.FolderPanel
setCurrentProgress(int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings.PluginStatusInfo
setCurrentScenario(Scenario) - Static method in class scenario.ScenarioService
setCurrentStatusText1(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMservice
setCurrentStatusText1(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.Experiment2GraphHelper
setCurrentStatusText1(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.MyClusterGraphBasedReLayoutService
setCurrentStatusText1(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.BackgroundTaskConsoleLogger
setCurrentStatusText1(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskStatusProviderSupportingExternalCallImpl
setCurrentStatusText1(String) - Method in interface org.BackgroundTaskStatusProviderSupportingExternalCall
setCurrentStatusText2(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMservice
setCurrentStatusText2(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.Experiment2GraphHelper
setCurrentStatusText2(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.MyClusterGraphBasedReLayoutService
setCurrentStatusText2(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.BackgroundTaskConsoleLogger
setCurrentStatusText2(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskStatusProviderSupportingExternalCallImpl
setCurrentStatusText2(String) - Method in interface org.BackgroundTaskStatusProviderSupportingExternalCall
setCurrentStatusValue(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.KeggSoapAndPathwayService
setCurrentStatusValue(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.HammingCalculator
setCurrentStatusValue(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMservice
setCurrentStatusValue(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg_reaction.ReactionService
setCurrentStatusValue(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.sib_enzymes.EnzymeService
setCurrentStatusValue(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathService
setCurrentStatusValue(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.AllSuperGraphsCreator
setCurrentStatusValue(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataFileReader
setCurrentStatusValue(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.Experiment2GraphHelper
setCurrentStatusValue(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggService
setCurrentStatusValue(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.TabKegg
setCurrentStatusValue(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.MyCorrlationFinder
setCurrentStatusValue(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.MyClusterGraphBasedReLayoutService
setCurrentStatusValue(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.MyNonInteractiveSpringEmb
setCurrentStatusValue(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PDFAlgorithm
setCurrentStatusValue(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskStatusProviderSupportingExternalCallImpl
setCurrentStatusValue(int) - Method in interface org.BackgroundTaskStatusProvider: Override this method and pass a implementor of this interface to any other service method.
setCurrentStatusValueFine(double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMservice
setCurrentStatusValueFine(double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.Experiment2GraphHelper
setCurrentStatusValueFine(double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.MyClusterGraphBasedReLayoutService
setCurrentStatusValueFine(double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskStatusProviderSupportingExternalCallImpl
setCurrentStatusValueFine(double) - Method in interface org.BackgroundTaskStatusProviderSupportingExternalCall
setCurrentStatusValueFineAdd(double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMservice
setCurrentStatusValueFineAdd(double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.Experiment2GraphHelper
setCurrentStatusValueFineAdd(double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.MyClusterGraphBasedReLayoutService
setCurrentStatusValueFineAdd(double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskStatusProviderSupportingExternalCallImpl
setCurrentStatusValueFineAdd(double) - Method in interface org.BackgroundTaskStatusProviderSupportingExternalCall
setCursor(double) - Method in class org.jfree.chart.axis.AxisState: Sets the cursor position.
setCustomTarget(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams
setCustomTarget(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams
setDashArray(float[]) - Method in class org.graffiti.graphics.Dash: Sets the dashArray to the given array.
setDashArray(float[]) - Method in class org.graffiti.graphics.LineModeAttribute: Sets the dashArray of the encapsulated Dash to the given array.
setDashArray(Edge, float[]) - Static method in class org.AttributeHelper
setDashArray(Edge, float[], float) - Static method in class org.AttributeHelper
setDashInfo(GraphElement, float[]) - Static method in class org.AttributeHelper
setDashInfo(GraphElement, float, float) - Static method in class org.AttributeHelper
setDashPhase(float) - Method in class org.graffiti.graphics.Dash: Sets the dashPhase to the given value.
setDashPhase(float) - Method in class org.graffiti.graphics.LineModeAttribute: Sets the dashPhase of the encapsulated Dash to the given value.
setData(Element) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
setData(Element) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
setData(Element) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment
setData(Element) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MappingDataEntity
setData(Element) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurement
setData(Element) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurementInterface
setData(Element) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample
setData(Element) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverage
setData(Element) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverageInterface
setData(Element) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface
setData(Element) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
setData(Element) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
setData(Element, Element) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
setData(Element, Element) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
setData(ValueDataset) - Method in class org.jfree.chart.plot.ThermometerPlot: Deprecated.
Use setDataset(...) instead.
setDataArea(Rectangle2D) - Method in class org.jfree.chart.plot.PlotRenderingInfo: Sets the data area.
setDataAreaRatio(double) - Method in class org.jfree.chart.plot.Plot: Sets the data area ratio.
setDatabase(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
setDatabase(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
setDatabase(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader
setDatabase(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface
setDatabaseId(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader
setDatabaseId(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface
setDataExtractOrder(TableOrder) - Method in class org.jfree.chart.plot.MultiplePiePlot: Sets the data extract order (by row or by column) and sends a PlotChangeEvent to all registered listeners.
setDataOfChildElement(Element) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
setDataOfChildElement(Element) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
setDataOfChildElement(Element) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment
setDataOfChildElement(Element) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.MappingDataEntity
setDataOfChildElement(Element) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurement
setDataOfChildElement(Element) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurementInterface
setDataOfChildElement(Element) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample
setDataOfChildElement(Element) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverage
setDataOfChildElement(Element) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverageInterface
setDataOfChildElement(Element) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface
setDataOfChildElement(Element) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
setDataOfChildElement(Element) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
setDataOfChildElement(Element, Element) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
setDataOfChildElement(Element, Element) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
setDataPoints(List<T>) - Method in class org.vanted.animation.Animation
setDataset(int, CategoryDataset) - Method in class org.jfree.chart.plot.CategoryPlot: Sets a dataset for the plot.
setDataset(int, XYDataset) - Method in class org.jfree.chart.plot.XYPlot: Sets a dataset for the plot.
setDataset(CategoryDataset) - Method in class org.jfree.chart.entity.CategoryItemEntity: Sets the datset this entity refers to.
setDataset(CategoryDataset) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the dataset for the plot, replacing the existing dataset, if there is one.
setDataset(ContourDataset) - Method in class org.jfree.chart.plot.ContourPlot: Sets the dataset for the plot, replacing the existing dataset if there is one.
setDataset(PieDataset) - Method in class org.jfree.chart.entity.PieSectionEntity: Sets the datset this entity refers to.
setDataset(PieDataset) - Method in class org.jfree.chart.plot.PiePlot: Sets the dataset and sends a DatasetChangeEvent to 'this'.
setDataset(ValueDataset) - Method in class org.jfree.chart.plot.MeterPlot: Sets the dataset for the plot, replacing the existing dataset if there is one.
setDataset(ValueDataset) - Method in class org.jfree.chart.plot.ThermometerPlot: Sets the dataset for the plot, replacing the existing dataset if there is one.
setDataset(XYDataset) - Method in class org.jfree.chart.entity.XYItemEntity: Sets the dataset this entity refers to.
setDataset(XYDataset) - Method in class org.jfree.chart.plot.PolarPlot: Sets the dataset for the plot, replacing the existing dataset if there is one.
setDataset(XYDataset) - Method in class org.jfree.chart.plot.XYPlot: Sets the primary dataset for the plot, replacing the existing dataset if there is one.
setDatasetRenderingOrder(DatasetRenderingOrder) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the rendering order and sends a PlotChangeEvent to all registered listeners.
setDatasetRenderingOrder(DatasetRenderingOrder) - Method in class org.jfree.chart.plot.XYPlot: Sets the rendering order and sends a PlotChangeEvent to all registered listeners.
setDataValue(T) - Method in class org.vanted.animation.data.TimePoint
setDate(int, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.RSSFeedManager
setDateFormat(int, Locale) - Method in class org.jfree.chart.title.DateTitle: Set the format of the date.
setDateFormatOverride(DateFormat) - Method in class org.jfree.chart.axis.DateAxis: Sets the date format override.
setDefaultGraphicsAttribute(Node, double, double) - Static method in class org.AttributeHelper
setDefaultGraphicsAttribute(Node, Point2D) - Static method in class org.AttributeHelper
setDefaultLinesVisible(boolean) - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer: Sets the default 'lines visible' flag.
setDefaultShapesFilled(boolean) - Method in class org.jfree.chart.renderer.LineAndShapeRenderer: Sets the default 'shapes filled' flag.
setDefaultShapesFilled(boolean) - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer: Sets the default 'shapes filled' flag.
setDefaultShapesFilled(Boolean) - Method in class org.jfree.chart.renderer.LineAndShapeRenderer: Sets the default 'shapes filled' flag.
setDefaultShapesFilled(Boolean) - Method in class org.jfree.chart.renderer.StandardXYItemRenderer: Sets the default 'shapes filled' flag.
setDefaultShapesVisible(boolean) - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer: Sets the default 'shapes visible' flag.
setDefaultTextPositioning() - Method in class org.graffiti.plugins.attributecomponents.simplelabel.ViewLabel
setDefaultValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttribute
setDefaultValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttribute
setDefaultValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundAttribute
setDefaultValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundPositionAttribute
setDefaultValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_color.LabelColorAttribute
setDefaultValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings.LabelFontAttribute
setDefaultValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style.LabelStyleAttribute
setDefaultValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttribute
setDefaultValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggGroupPartAttribute
setDefaultValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggIdAttribute
setDefaultValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionIdAttribute
setDefaultValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionTypeAttribute
setDefaultValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSrcTgtAttribute
setDefaultValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSubTypeAttribute
setDefaultValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationTypeAttribute
setDefaultValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggTypeAttribute
setDefaultValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment.LabelAlignmentAttribute
setDefaultValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttribute
setDefaultValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttribute
setDefaultValue() - Method in interface org.graffiti.attributes.Attribute: The attribute's value is set so that its getValue() method will not return null.
setDefaultValue() - Method in class org.graffiti.attributes.BooleanAttribute
setDefaultValue() - Method in class org.graffiti.attributes.ByteAttribute
setDefaultValue() - Method in class org.graffiti.attributes.DoubleAttribute
setDefaultValue() - Method in class org.graffiti.attributes.FloatAttribute
setDefaultValue() - Method in class org.graffiti.attributes.HashMapAttribute: Already done in constructor for this attribute type.
setDefaultValue() - Method in class org.graffiti.attributes.IntegerAttribute
setDefaultValue() - Method in class org.graffiti.attributes.LinkedHashMapAttribute: Already done in constructor for this attribute type.
setDefaultValue() - Method in class org.graffiti.attributes.LongAttribute
setDefaultValue() - Method in class org.graffiti.attributes.ObjectAttribute
setDefaultValue() - Method in class org.graffiti.attributes.ShortAttribute
setDefaultValue() - Method in class org.graffiti.attributes.StringAttribute
setDefaultValue() - Method in class org.graffiti.graphics.AWTImageAttribute
setDefaultValue() - Method in class org.graffiti.graphics.LineModeAttribute
setDefaultValue() - Method in class org.vanted.indexednodes.IndexAttribute
setDefaultView(String) - Method in class org.graffiti.managers.DefaultViewManager
setDefaultView(String) - Method in interface org.graffiti.managers.ViewManager
setdelayAnnotation(Annotation) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
setDelayFunction(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
setDelayMetaID(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
setdelayNonRDFAnnotation(XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
setDelayNotes(String, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
setDelaySBOTerm(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
setDeleteableAttribute(String, String) - Static method in class org.AttributeHelper: Memorizes an attribute, which's editor may be clicked, resulting in the deletion of an attribute (not necessarily the clicked one):
setDeleted(boolean) - Method in class org.graffiti.attributes.AbstractAttribute
setDeleted(boolean) - Method in interface org.graffiti.attributes.Attribute
setDeletePath(String) - Method in class org.graffiti.attributes.AttributeDescription
setDependencies(List<PluginDependency>) - Method in class org.graffiti.managers.pluginmgr.PluginDescription: Sets the dependencies.
setDependency(Dependency) - Method in exception org.graffiti.managers.pluginmgr.PluginManagerException: Sets the dependency.
setDepth(Node, double) - Static method in class org.AttributeHelper
setDepthFactor(double) - Method in class org.jfree.chart.plot.PiePlot3D: Sets the pie depth as a percentage of the height of the plot area.
setDepthOffset(HashMap<Integer, Double>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.TreeContainer
setDescription(String) - Method in class org.graffiti.attributes.AbstractAttribute: Provides a description for this attribute.
setDescription(String) - Method in class org.graffiti.managers.pluginmgr.PluginDescription: Sets the description.
setDescription(String) - Method in interface org.graffiti.plugin.Displayable: Sets a short description of this object.
setDescription(String) - Method in class org.graffiti.plugin.parameter.AbstractSingleParameter: Sets the description.
setDescription(String) - Method in class org.jfree.data.gantt.Task: Sets the task description.
setDescription(String) - Method in class org.jfree.data.Series: Sets the description of the series.
setDescription(PluginDescription) - Method in class org.graffiti.managers.pluginmgr.DefaultPluginEntry: Sets the description.
setDescription(PluginDescription) - Method in interface org.graffiti.managers.pluginmgr.PluginEntry: Sets the description.
setDetail(String) - Method in class org.graffiti.plugin.io.resources.IOurl
setDialBackgroundPaint(Paint) - Method in class org.jfree.chart.plot.MeterPlot: Sets the paint used to fill the dial background.
setDialOutlinePaint(Paint) - Method in class org.jfree.chart.plot.MeterPlot: Sets the dial outline paint.
setDialShape(DialShape) - Method in class org.jfree.chart.plot.MeterPlot: Sets the dial shape.
setDialType(int) - Method in class org.jfree.chart.plot.MeterPlot: Deprecated.
Use setDialShape(...).
setDifferences(ArrayList<Double>) - Method in class qmwi.kseg.som.CSV_SOM_dataEntry
setDifferences(ArrayList<Double>) - Method in interface qmwi.kseg.som.SOMdataEntry
setDimension(double, double) - Method in class org.graffiti.graphics.DimensionAttribute: Sets the Dimension of the attribute.
setDimension(Dimension) - Method in class org.graffiti.graphics.DimensionAttribute: Sets the Dimension of the attribute.
setDimension(DimensionAttribute) - Method in class org.graffiti.graphics.NodeGraphicAttribute: Sets the 'dimension'-value.
setDirected(boolean) - Method in class org.graffiti.graph.AbstractEdge: Determines if an Edge is directed (true) or not.
setDirected(boolean) - Method in class org.graffiti.graph.AbstractGraph: Sets all edges to be directed.
setDirected(boolean) - Method in interface org.graffiti.graph.Edge: Determines if an Edge is directed (true) or not.
setDirected(boolean) - Method in interface org.graffiti.graph.Graph: When passing a true value, all undirected edges in the graph will be set to be directed.
setDirected(boolean, boolean) - Method in class org.graffiti.graph.AbstractGraph: When passing a true value, all undirected edges in the graph will be set to be directed.
setDirected(boolean, boolean) - Method in interface org.graffiti.graph.Graph: When passing a true value, all undirected edges in the graph will be set to be directed.
setDirection(Rotation) - Method in class org.jfree.chart.plot.PiePlot: Sets the direction in which the pie sections are drawn and sends a PlotChangeEvent to all registered listeners.
setDiscardedRowIDs(HashSet<String>) - Static method in class org.graffiti.plugins.inspectors.defaults.DefaultEditPanel
setDismissDelay(int) - Method in class org.jfree.chart.ChartPanel: Specifies the dismissal delay value for this chart panel.
setDisplayable(Displayable) - Method in class org.graffiti.plugin.editcomponent.AbstractValueEditComponent: Sets the displayable.
setDisplayable(Displayable) - Method in class org.graffiti.plugin.editcomponent.EdgeEditComponent
setDisplayable(Displayable) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
setDisplayable(Displayable) - Method in class org.graffiti.plugin.editcomponent.NodeEditComponent
setDisplayable(Displayable) - Method in class org.graffiti.plugin.editcomponent.NumberEditComponent: Sets the displayable.
setDisplayable(Displayable) - Method in class org.graffiti.plugin.editcomponent.SpinnerEditComponent: Sets the displayable.
setDisplayable(Displayable) - Method in interface org.graffiti.plugin.editcomponent.ValueEditComponent: Sets the object that will be displayed.
setDisplayRange(int, double, double) - Method in class org.jfree.chart.plot.ThermometerPlot: Sets the display range.
setDisplaySeriesLines(boolean) - Method in class org.jfree.chart.StandardLegend: Sets a flag that controls whether or not the legend displays the series line stroke.
setDisplaySeriesShapes(boolean) - Method in class org.jfree.chart.StandardLegend: Sets a flag that controls whether or not the legend displays the series shapes.
setDisplayToolTips(boolean) - Method in class org.jfree.chart.ChartPanel: Switches chart tooltip generation on or off.
setDistanceInformation(String, String, int, int, int, ArrayList<String>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DistanceMatrix
setDocking(DockingAttribute) - Method in class org.graffiti.graphics.EdgeGraphicAttribute: Sets the 'docking'-value.
setDomainAxis(int, CategoryAxis) - Method in class org.jfree.chart.plot.CategoryPlot: Sets a domain axis.
setDomainAxis(int, ValueAxis) - Method in class org.jfree.chart.plot.XYPlot: Sets a domain axis and sends a PlotChangeEvent to all registered listeners.
setDomainAxis(CategoryAxis) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the domain axis for the plot and sends a PlotChangeEvent to all registered listeners.
setDomainAxis(ValueAxis) - Method in class org.jfree.chart.plot.ContourPlot: Sets the domain axis for the plot (this must be compatible with the plot type or an exception is thrown).
setDomainAxis(ValueAxis) - Method in class org.jfree.chart.plot.XYPlot: Sets the domain axis for the plot and sends a PlotChangeEvent to all registered listeners.
setDomainAxisLocation(int, AxisLocation) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the location for a domain axis and sends a PlotChangeEvent to all registered listeners.
setDomainAxisLocation(int, AxisLocation) - Method in class org.jfree.chart.plot.XYPlot: Sets the location for a domain axis and sends a PlotChangeEvent to all registered listeners.
setDomainAxisLocation(AxisLocation) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the location of the domain axis and sends a PlotChangeEvent to all registered listeners.
setDomainAxisLocation(AxisLocation) - Method in class org.jfree.chart.plot.XYPlot: Sets the location of the domain axis and sends a PlotChangeEvent to all registered listeners.
setDomainAxisLocation(AxisLocation, boolean) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the location of the domain axis.
setDomainAxisLocation(AxisLocation, boolean) - Method in class org.jfree.chart.plot.XYPlot: Sets the location of the domain axis and, if requested, sends a PlotChangeEvent to all registered listeners.
setDomainCrosshairLockedOnData(boolean) - Method in class org.jfree.chart.plot.ContourPlot: Sets the flag indicating whether or not the domain crosshair should "lock-on" to actual data values.
setDomainCrosshairLockedOnData(boolean) - Method in class org.jfree.chart.plot.XYPlot: Sets the flag indicating whether or not the domain crosshair should "lock-on" to actual data values.
setDomainCrosshairPaint(Paint) - Method in class org.jfree.chart.plot.ContourPlot: Sets the Paint used to color the crosshairs (if visible) and notifies registered listeners that the axis has been modified.
setDomainCrosshairPaint(Paint) - Method in class org.jfree.chart.plot.XYPlot: Sets the Paint used to color the crosshairs (if visible) and notifies registered listeners that the axis has been modified.
setDomainCrosshairStroke(Stroke) - Method in class org.jfree.chart.plot.ContourPlot: Sets the Stroke used to draw the crosshairs (if visible) and notifies registered listeners that the axis has been modified.
setDomainCrosshairStroke(Stroke) - Method in class org.jfree.chart.plot.XYPlot: Sets the Stroke used to draw the crosshairs (if visible) and notifies registered listeners that the axis has been modified.
setDomainCrosshairValue(double) - Method in class org.jfree.chart.plot.ContourPlot: Sets the domain crosshair value.
setDomainCrosshairValue(double) - Method in class org.jfree.chart.plot.XYPlot: Sets the domain crosshair value and sends a PlotChangeEvent to all registered listeners (provided that the domain crosshair is visible).
setDomainCrosshairValue(double, boolean) - Method in class org.jfree.chart.plot.ContourPlot: Sets the domain crosshair value.
setDomainCrosshairValue(double, boolean) - Method in class org.jfree.chart.plot.XYPlot: Sets the domain crosshair value and, if requested, sends a PlotChangeEvent to all registered listeners (provided that the domain crosshair is visible).
setDomainCrosshairVisible(boolean) - Method in class org.jfree.chart.plot.ContourPlot: Sets the flag indicating whether or not the domain crosshair is visible.
setDomainCrosshairVisible(boolean) - Method in class org.jfree.chart.plot.XYPlot: Sets the flag indicating whether or not the domain crosshair is visible.
setDomainDescription(String) - Method in class org.jfree.data.time.TimePeriodValues: Sets the domain description.
setDomainDescription(String) - Method in class org.jfree.data.time.TimeSeries: Sets the domain description.
setDomainGridlinePaint(Paint) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the paint used to draw the grid-lines (if any) against the domain axis.
setDomainGridlinePaint(Paint) - Method in class org.jfree.chart.plot.FastScatterPlot: Sets the paint for the grid lines plotted against the domain axis.
setDomainGridlinePaint(Paint) - Method in class org.jfree.chart.plot.XYPlot: Sets the paint for the grid lines plotted against the domain axis.
setDomainGridlinePosition(CategoryAnchor) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the position used for the domain gridlines.
setDomainGridlineStroke(Stroke) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the stroke used to draw grid-lines against the domain axis.
setDomainGridlineStroke(Stroke) - Method in class org.jfree.chart.plot.FastScatterPlot: Sets the stroke for the grid lines plotted against the domain axis.
setDomainGridlineStroke(Stroke) - Method in class org.jfree.chart.plot.XYPlot: Sets the stroke for the grid lines plotted against the domain axis.
setDomainGridlinesVisible(boolean) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the flag that controls whether or not grid-lines are drawn against the domain axis.
setDomainGridlinesVisible(boolean) - Method in class org.jfree.chart.plot.FastScatterPlot: Sets the flag that controls whether or not the domain grid-lines are visible.
setDomainGridlinesVisible(boolean) - Method in class org.jfree.chart.plot.XYPlot: Sets the flag that controls whether or not the domain grid-lines are visible.
setDomainIsPointsInTime(boolean) - Method in class org.jfree.data.time.TimePeriodValuesCollection: Sets a flag that controls whether the domain is treated as 'points in time', or time periods.
setDomainIsPointsInTime(boolean) - Method in class org.jfree.data.time.TimeSeriesCollection: Sets a flag that controls whether the domain is treated as 'points in time', or time periods.
setDomainIsPointsInTime(boolean) - Method in class org.jfree.data.time.TimeTableXYDataset: Sets a flag that controls whether the domain is treated as 'points in time', or time periods.
setDomainTickBandPaint(Paint) - Method in class org.jfree.chart.plot.XYPlot: Sets the paint for the domain tick bands.
setDoShowResult(DataMapping.ShowMappingResults) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping.DataMapping
setDouble(double) - Method in class org.graffiti.attributes.DoubleAttribute: Set the value of this Object.
setDouble(double) - Method in class org.graffiti.plugin.algorithm.ThreadSafeOptions
setDouble(double) - Method in class org.graffiti.plugin.parameter.DoubleParameter: Sets this parameter's value.
setDouble(Double) - Method in class org.graffiti.plugin.parameter.DoubleParameter: Sets this parameter's value.
setDouble(String, double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
setDouble(String, double) - Method in class org.graffiti.attributes.AbstractAttributable: Sets the Attribute at the given path to the given value.
setDouble(String, double) - Method in interface org.graffiti.attributes.Attributable: Sets the Attribute at the given path to the given value.
setDoubleBuffered(JComponent, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithm
setDownArrow(Shape) - Method in class org.jfree.chart.axis.ValueAxis: Sets the shape that can be displayed as an arrow pointing downwards at the end of an axis line and sends an AxisChangeEvent to all registered listeners.
setDownPaint(Paint) - Method in class org.jfree.chart.renderer.CandlestickRenderer: Sets the paint used to fill candles when the price moves down from open to close.
setDPI(int) - Method in class org.vanted.scaling.resources.ScaledFontUIResource
setDrawBarOutline(boolean) - Method in class org.jfree.chart.renderer.BarRenderer: Sets the flag that controls whether or not bar outlines are drawn and sends a RendererChangeEvent to all registered listeners.
setDrawBorder(boolean) - Method in class org.jfree.chart.plot.CompassPlot: Sets a flag that controls whether or not a border is drawn.
setDrawBorder(boolean) - Method in class org.jfree.chart.plot.MeterPlot: Sets the flag that controls whether or not a rectangular border is drawn around the plot area.
setDrawCloseTicks(boolean) - Method in class org.jfree.chart.renderer.HighLowRenderer: Sets the flag that controls whether close ticks are drawn, and sends a RendererChangeEvent to all registered listeners.
setDrawingSupplier(DrawingSupplier) - Method in class org.jfree.chart.plot.Plot: Sets the drawing supplier for the plot.
setDrawLines(boolean) - Method in class org.jfree.chart.renderer.LineAndShapeRenderer: Sets the flag that controls whether or not lines are drawn between consecutive data points.
setDrawLines(boolean) - Method in class org.jfree.chart.renderer.MinMaxCategoryRenderer: Sets whether or not lines are drawn between category points.
setDrawMode(DrawMode) - Method in class org.graffiti.plugins.views.defaults.GraffitiView
setDrawOnlyTopOfErrorBar(boolean) - Method in class org.jfree.data.statistics.DefaultStatisticalCategoryDataset
setDrawOnlyTopOfErrorBar(boolean) - Method in interface org.jfree.data.statistics.StatisticalCategoryDataset
setDrawOpenTicks(boolean) - Method in class org.jfree.chart.renderer.HighLowRenderer: Sets the flag that controls whether open ticks are drawn, and sends a RendererChangeEvent to all registered listeners.
setDrawOutlines(boolean) - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer: Sets the flag that controls whether outlines are drawn for filled shapes, and sends a RendererChangeEvent to all registered listeners.
setDrawPaint(Paint) - Method in class org.jfree.chart.ClipPath: Sets the drawPaint.
setDrawPath(boolean) - Method in class org.jfree.chart.ClipPath: Sets the drawPath.
setDrawShapes(boolean) - Method in class org.jfree.chart.renderer.LineAndShapeRenderer: Sets the flag that controls whether or not a shape should be drawn to represent each data point.
setDrawSharedDomainAxis(boolean) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the flag that controls whether the shared domain axis is drawn when this plot is being used as a subplot.
setDrawStdDev(boolean, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyLineAndShapeRenderer
setDrawStroke(Stroke) - Method in class org.jfree.chart.ClipPath: Sets the drawStroke.
setDrawVolume(boolean) - Method in class org.jfree.chart.renderer.CandlestickRenderer: Sets a flag that controls whether or not volume bars are drawn in the background.
setDuration(TimePeriod) - Method in class org.jfree.data.gantt.Task: Sets the task duration (actual or estimated).
setDval(int, double) - Method in class org.graffiti.plugin.algorithm.ThreadSafeOptions: DOCUMENT ME!
setEdgeBendStyle(Edge, String) - Static method in class org.AttributeHelper
setEdgeLabel(Edge, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setEditCommand(Runnable) - Static method in class org.graffiti.plugins.modes.defaults.AdvancedLabelTool
setEditComponentMap(Map) - Method in class org.graffiti.plugins.inspectors.defaults.DefaultEditPanel: Sets the map of editcomponents to the given map.
setEditComponentMap(Map<?, ?>) - Method in class org.graffiti.plugin.inspector.EditPanel: Sets the map of editcomponents to the given map.
setEditComponentMap(Map<Class<? extends Displayable>, Class<? extends ValueEditComponent>>) - Method in interface org.graffiti.plugin.editcomponent.NeedEditComponents: Set the map that connects attributes and parameters with editcomponents.
setEditComponentMap(Map<Class<? extends Displayable>, Class<? extends ValueEditComponent>>) - Method in class org.graffiti.plugins.inspectors.defaults.Inspector
setEditDeleteCommand(DeleteAction) - Static method in class org.graffiti.plugins.modes.defaults.AdvancedLabelTool
setEditFieldValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttributeEditor
setEditFieldValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.LineModeAttributeEditor
setEditFieldValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartAttributeEditor
setEditFieldValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartsColumnAttributeEditor
setEditFieldValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttributeEditor
setEditFieldValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundImageAttributeEditor
setEditFieldValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundImagePositionAttributeEditor
setEditFieldValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings.LabelFontAttributeEditor
setEditFieldValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style.LabelStyleAttributeEditor
setEditFieldValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttributeEditor
setEditFieldValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggGroupPartAttributeEditor
setEditFieldValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionIdAttributeEditor
setEditFieldValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionTypeAttributeEditor
setEditFieldValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSubTypeAttributeEditor
setEditFieldValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationTypeAttributeEditor
setEditFieldValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggTypeAttributeEditor
setEditFieldValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment.LabelAlignmentAttributeEditor
setEditFieldValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttributeEditor
setEditFieldValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttributeEditor
setEditFieldValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.enhanced_attribute_editors.EnhDoubleEditComponent
setEditFieldValue() - Method in class org.graffiti.plugin.editcomponent.ComboBoxEditComponent: Sets the current value of the Attribute in the corresponding JComponent.
setEditFieldValue() - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
setEditFieldValue() - Method in class org.graffiti.plugin.editcomponent.NumberEditComponent: Sets the current value of the Attribute in the corresponding JComponent.
setEditFieldValue() - Method in class org.graffiti.plugin.editcomponent.SingleGraphElementEditComponent: Sets the current value of the Attribute in the corresponding JComponent.
setEditFieldValue() - Method in class org.graffiti.plugin.editcomponent.SpinnerEditComponent: Sets the current value of the Attribute in the corresponding JComponent.
setEditFieldValue() - Method in class org.graffiti.plugin.editcomponent.StandardValueEditComponent: Updates this component with the value from the displayable.
setEditFieldValue() - Method in interface org.graffiti.plugin.editcomponent.ValueEditComponent: Sets the current value of the Displayable in the corresponding JComponent.
setEditFieldValue() - Method in class org.graffiti.plugins.editcomponents.defaults.BooleanEditComponent: Sets the current value of the Attribute in the corresponding JComponent.
setEditFieldValue() - Method in class org.graffiti.plugins.editcomponents.defaults.ColorChooserEditComponent: Sets the current value of the Attribute in the corresponding JComponent.
setEditFieldValue() - Method in class org.graffiti.plugins.editcomponents.defaults.LineModeEditComponent: Sets the current value of the Attribute in the corresponding JComponent.
setEditFieldValue() - Method in class org.graffiti.plugins.editcomponents.defaults.MultiFileSelectionEditComponent
setEditFieldValue() - Method in class org.graffiti.plugins.editcomponents.defaults.NodeShapeEditComponent
setEditFieldValue() - Method in class org.graffiti.plugins.editcomponents.defaults.StringEditComponent: Sets the current value of the displayable in the corresponding JComponent.
setEditFieldValue() - Method in class org.graffiti.plugins.views.defaults.DockingAttributeEditor
setEditFieldValue() - Method in class org.graffiti.plugins.views.defaults.GradientFillAttributeEditor
setEditFieldValue() - Method in class org.graffiti.plugins.views.defaults.ThicknessAttributeEditor
setEditFieldValue() - Method in class org.vanted.plugins.layout.stressminimization.parameters.LandmarkSliderComponent
setEditFieldValue() - Method in class org.vanted.plugins.layout.stressminimization.parameters.SliderComponent
setEditPanelComponentMap(Map<?, ?>) - Method in class org.graffiti.plugin.inspector.InspectorTab
setEditPanelGraphElementMap(Map<GraphElement, GraphElement>) - Method in class org.graffiti.plugin.inspector.InspectorTab
setEditPanelInformation(Map<?, ?>, Map<GraphElement, GraphElement>) - Method in class org.graffiti.plugin.inspector.InspectorTab
setEditPanelInformation(Map<?, ?>, Map<GraphElement, GraphElement>) - Method in class org.graffiti.plugin.inspector.SubtabHostTab
setEditTypeMap(Map<?, ?>) - Method in class org.graffiti.editor.dialog.ParameterEditPanel: Sets the map of displayable types to the given map.
setEmptyBorderWidth(int) - Method in class org.FolderPanel
setEnabled(boolean) - Method in class org.graffiti.plugin.actions.GraffitiAction
setEnabled(boolean) - Method in class org.graffiti.plugin.editcomponent.AbstractValueEditComponent
setEnabled(boolean) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
setEnabled(boolean) - Method in class org.graffiti.plugin.editcomponent.NumberEditComponent
setEnabled(boolean) - Method in interface org.graffiti.plugin.editcomponent.ValueEditComponent: Specifies whether this component should allow editing.
setEnabled(String, boolean) - Method in class org.SettingsHelperDefaultIsFalse
setEnabled(String, boolean) - Method in class org.SettingsHelperDefaultIsTrue
setEndPercent(double) - Method in class org.jfree.chart.renderer.GanttRenderer: Sets the position of the end of the progress indicator, as a percentage of the bar width.
setEndType(AreaRendererEndType) - Method in class org.jfree.chart.renderer.AreaRenderer: Sets a token that controls how the renderer draws the end points, and sends a RendererChangeEvent to all registered listeners.
setEndValue(int, Object, Number) - Method in class org.jfree.data.DefaultIntervalCategoryDataset: Sets the end data value for one category in a series.
setEnforceFileExtensions(boolean) - Method in class org.jfree.chart.ChartPanel: Sets a flag that controls whether or not file extensions are enforced.
setEntityCollection(EntityCollection) - Method in class org.jfree.chart.ChartRenderingInfo: Sets the entity collection.
setErrorBarLen(double) - Method in class org.jfree.data.statistics.DefaultStatisticalCategoryDataset
setErrorBarLen(double) - Method in interface org.jfree.data.statistics.StatisticalCategoryDataset
setEventType(AbstractEvent.EVENTTYPE) - Method in class org.graffiti.event.AbstractEvent
setExcelfileid(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader: Deprecated.
setExcelfileid(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface: Deprecated.
setExceptionSegments(List) - Method in class org.jfree.chart.axis.SegmentedTimeline: Sets the exception segments list.
setExpcoord(LinkedHashSet<String>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation
setExperimenData(ExperimentInterface) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.RunnableWithMappingData
setExperimenData(ExperimentInterface) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.RunnableWithXMLexperimentData
setExperimentCoordinator(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
setExperimentCoordinator(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
setExperimentData(ExperimentInterface) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping.DataMapping
setExperimentData(ExperimentInterface) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.AbstractExperimentDataProcessor
setExperimentData(ExperimentInterface) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataProcessor: Perform data mapping (or something else).
setExperimentData(ExperimentInterface) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.PutIntoSidePanel
setExperimentDatabaseId(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
setExperimentDatabaseId(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
setExperimentDataReceiver(ExperimentDataPresenter) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.ExperimentDataDragAndDropHandler
setExperimentDataReceiver(ExperimentDataPresenter) - Method in class de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoader
setExperimentId(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader
setExperimentId(int) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface: Deprecated.
setExperimentImportdate(Date) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
setExperimentImportdate(Date) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
setExperimentInfo(ExperimentHeaderInterface) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
setExperimentInfo(ExperimentHeaderInterface) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
setExperimentname(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader
setExperimentname(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface
setExperimentName(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
setExperimentName(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
setExperimentName(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataFileReader
setExperimentRemark(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
setExperimentRemark(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
setExperimentStartDate(Date) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
setExperimentStartDate(Date) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
setExperimenttype(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader
setExperimenttype(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface
setExperimentType(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
setExperimentType(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
setExpimportdate(LinkedHashSet<String>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation
setExplodedPieArea(Rectangle2D) - Method in class org.jfree.chart.plot.PiePlotState: Sets the exploded pie area.
setExplodePercent(int, double) - Method in class org.jfree.chart.plot.PiePlot: Sets the amount that a pie section should be exploded and sends a PlotChangeEvent to all registered listeners.
setExpname(LinkedHashSet<String>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation
setExpstartdate(LinkedHashSet<String>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation
setExpTickLabelsFlag(boolean) - Method in class org.jfree.chart.axis.LogarithmicAxis: Sets the 'expTickLabelsFlag' flag.
setFactor(float) - Method in class org.vanted.scaling.ComponentRegulator
setFaroutCoefficient(double) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerXYDataset: Sets the value used as the farouts coefficient.
setFast(Node, Boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setFGcolor(Color) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Graphics
setField(Condition.ConditionInfo, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
setFile(File) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.RunnableForFile
setFiledir(String) - Method in class org.graffiti.plugin.io.resources.FileSystemIOConfig
setFileLoadHelper(MultipleFileLoader) - Static method in enum org.Release
setFilename(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.RestApiBiomodels
setFileName(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.BufferedImageResult
setFileName(String) - Method in class org.graffiti.plugin.io.resources.IOurl
setFileName(String) - Method in class org.graffiti.session.EditorSession: Sets the fileName.
setFileTypeDescription(String) - Method in class org.graffiti.graph.AdjListGraph: Sets a file type description which can be used to choose an appropriate output serializer independent of the file extension.
setFileTypeDescription(String) - Method in interface org.graffiti.graph.Graph: Sets a file type description which can be used to choose an appropriate output serializer independent of the file extension.
setFileTypeDescription(String) - Method in class org.graffiti.session.EditorSession: Sets a file type description which can be used to choose an appropriate output serializer independent of the file extension.
setFillBox(boolean) - Method in class org.jfree.chart.renderer.BoxAndWhiskerRenderer: Sets the flag that controls whether or not the box is filled and sends a RendererChangeEvent to all registered listeners.
setFillBox(boolean) - Method in class org.jfree.chart.renderer.XYBoxAndWhiskerRenderer: Sets the flag that controls whether or not the box is filled and sends a RendererChangeEvent to all registered listeners.
setFillcolor(ColorAttribute) - Method in class org.graffiti.graphics.GraphElementGraphicAttribute: Sets the 'fillcolor'-value.
setFillColor(Color) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
setFillColor(Attributable, Color) - Static method in class org.AttributeHelper: Sets the fill color of a given Atttibutable.
setFillColorHEX(Attributable, String) - Static method in class org.AttributeHelper
setFillPaint(Paint) - Method in class org.jfree.chart.ClipPath: Sets the fillPaint.
setFillPaint(Paint) - Method in class org.jfree.chart.needle.MeterNeedle: Sets the fill paint.
setFillPath(boolean) - Method in class org.jfree.chart.ClipPath: Sets the fillPath.
setFillZoomRectangle(boolean) - Method in class org.jfree.chart.ChartPanel: A flag that controls how the zoom rectangle is drawn.
setFinished(boolean) - Method in class org.vanted.updater.ScanForAddonUpdates
setFirstBarPaint(Paint) - Method in class org.jfree.chart.renderer.WaterfallBarRenderer: Sets the paint that will be used to draw the first bar.
setFixedAutoRange(double) - Method in class org.jfree.chart.axis.CyclicNumberAxis: The auto range is fixed for this class to the period by default.
setFixedAutoRange(double) - Method in class org.jfree.chart.axis.ValueAxis: Sets the fixed auto range for the axis.
setFixedDimension(double) - Method in class org.jfree.chart.axis.Axis: Sets the fixed dimension for the axis.
setFixedDomainAxisSpace(AxisSpace) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the fixed domain axis space.
setFixedDomainAxisSpace(AxisSpace) - Method in class org.jfree.chart.plot.XYPlot: Sets the fixed domain axis space.
setFixedLegendItems(LegendItemCollection) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the fixed legend items for the plot.
setFixedLegendItems(LegendItemCollection) - Method in class org.jfree.chart.plot.XYPlot: Sets the fixed legend items for the plot.
setFixedRangeAxisSpace(AxisSpace) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the fixed range axis space.
setFixedRangeAxisSpace(AxisSpace) - Method in class org.jfree.chart.plot.XYPlot: Sets the fixed range axis space.
setFixPath2Models(boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.sbml.SBML_XML_Reader
setFloat(float) - Method in class org.graffiti.attributes.FloatAttribute: Set the value of this Object.
setFloat(String, float) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
setFloat(String, float) - Method in class org.graffiti.attributes.AbstractAttributable: Sets the Attribute at the given path to the given value.
setFloat(String, float) - Method in interface org.graffiti.attributes.Attributable: Sets the Attribute at the given path to the given value.
setFollowDataInSubranges(boolean) - Method in class org.jfree.chart.plot.JThermometer: Sets the flag that controls whether or not the display range follows the data value.
setFollowDataInSubranges(boolean) - Method in class org.jfree.chart.plot.ThermometerPlot: Sets the flag that controls whether or not the thermometer axis zooms to display the subrange within which the data value falls.
setFont(Font) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttribute
setFont(Font) - Method in class org.jfree.chart.annotations.TextAnnotation: Sets the font for the annotation.
setFont(Font) - Method in class org.jfree.chart.title.TextTitle: Sets the font used to display the title string.
setFont(LabelAttribute, String) - Static method in class org.AttributeHelper: Sets the font to use when the label is drawed.
setFontName(String) - Method in class org.graffiti.graphics.LabelAttribute
setFontSize(int) - Method in class org.graffiti.graphics.LabelAttribute
setFontStyle(String) - Method in class org.graffiti.graphics.LabelAttribute
setForeground(Color) - Method in class org.jfree.chart.plot.JThermometer: Sets the foreground color.
setForegroundAlpha(float) - Method in class org.jfree.chart.plot.Plot: Sets the alpha-transparency for the plot.
setFormat(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.RestApiBiomodels
setFormula(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
setFormula(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
setFormularData(TemplateLoaderInterface, Object[]) - Method in class de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoaderInstance
setFormularData(TemplateLoaderInterface, Object[]) - Method in interface de.ipk_gatersleben.ag_pbi.datahandling.TemplateLoaderInterface
setFoundComponent(Component) - Method in class org.graffiti.plugins.modes.defaults.MegaTools
setFPS(int) - Method in class org.vanted.animation.Animator: Sets the number of times animations are updated per second.
setFrame(LabelFrameSetting) - Method in class org.graffiti.plugins.attributecomponents.simplelabel.ViewLabel
setFramecolor(ColorAttribute) - Method in class org.graffiti.graphics.GraphElementGraphicAttribute: Sets the 'framecolor'-value.
setFrameColor(Color, Color) - Method in class org.FolderPanel
setFrameColor(Color, Color, int, int) - Method in class org.FolderPanel
setFrameThickness(double) - Method in class org.graffiti.graphics.GraphElementGraphicAttribute: Sets the 'frameThickness'-value.
setFrameThickNess(GraphElement, double) - Static method in class org.AttributeHelper
setFst(Point2D) - Method in class org.graffiti.plugins.attributecomponents.simplelabel.PointPair: DOCUMENT ME!
setFuncat(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
setFuncat(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
setFunction(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLAlgebraicRule
setFunction(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLAssignmentRule
setFunction(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLConstraint
setFunction(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventAssignmentHelper
setFunction(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLFunctionDefinition
setFunction(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLInitialAssignment
setFunction(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLRateRule
setFunction(Node, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.KineticLawHelper
setFurtherOptions(Graph, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ChartOptions
setFurtherOptions(Graph, BioStatisticalCategoryDataset, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ChartOptions
setGap(double) - Method in class org.jfree.chart.plot.CombinedDomainCategoryPlot: Sets the amount of space between subplots and sends a PlotChangeEvent to all registered listeners.
setGap(double) - Method in class org.jfree.chart.plot.CombinedDomainXYPlot: Sets the amount of space between subplots and sends a PlotChangeEvent to all registered listeners.
setGap(double) - Method in class org.jfree.chart.plot.CombinedRangeCategoryPlot: Sets the amount of space between subplots and sends a PlotChangeEvent to all registered listeners.
setGap(double) - Method in class org.jfree.chart.plot.CombinedRangeXYPlot: Sets the amount of space between subplots.
setGapThreshold(double) - Method in class org.jfree.chart.renderer.StandardXYItemRenderer: Sets the gap threshold for discontinuous lines.
setGeneId(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionDatapoint
setGenotype(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
setGenotype(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
setGradientPaintTransformer(GradientPaintTransformer) - Method in class org.jfree.chart.renderer.BarRenderer: Sets the gradient paint transformer and sends a RendererChangeEvent to all registered listeners.
setGradientPaintTransformer(GradientPaintTransformer) - Method in class org.jfree.chart.renderer.XYBarRenderer: Sets the gradient paint transformer and sends a RendererChangeEvent to all registered listeners.
setGraph(Graph) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
setGraph(Graph) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.fast_view.FastView
setGraph(Graph) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKGraffitiView: This methods sets the graph and adds the background color attribute, since this View supports background coloring
setGraph(Graph) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.NullView
setGraph(Graph) - Method in class org.graffiti.graph.AdjListEdge
setGraph(Graph) - Method in class org.graffiti.graph.AdjListNode
setGraph(Graph) - Method in interface org.graffiti.graph.Edge
setGraph(Graph) - Method in interface org.graffiti.graph.Node
setGraph(Graph) - Method in class org.graffiti.plugin.tool.AbstractTool: Sets the graph of this tool.
setGraph(Graph) - Method in interface org.graffiti.plugin.tool.Tool: Sets the graph this tool works on.
setGraph(Graph) - Method in class org.graffiti.plugin.view.AbstractView: Sets the graph this view displays.
setGraph(Graph) - Method in interface org.graffiti.plugin.view.View: Sets the graph of the view to the specified value.
setGraph(Graph) - Method in class org.graffiti.plugins.views.defaults.GraffitiView: Sets the graph this view displays.
setGraph(Graph) - Method in class org.graffiti.plugins.views.matrix.MatrixView
setGraphComponent() - Method in class org.graffiti.plugin.editcomponent.EdgeEditComponent: Sets the graph component selectable by this edit component.
setGraphElement(GraphElement) - Method in class org.graffiti.plugin.editcomponent.GraphComponentEditComponent: Sets the graph component selectable by this edit component.
setGraphElement(GraphElement) - Method in class org.graffiti.plugin.editcomponent.SingleGraphElementEditComponent: Sets the graph component selectable by this edit component.
setGraphElementMap(Map<?, ?>) - Method in class org.graffiti.plugin.inspector.EditPanel: Sets a reference to the map between old and new graph elements needed by edit panel for creation of undo edits.
setGraphElementShape(GraphElementShape) - Method in class org.graffiti.plugin.attributecomponent.AbstractAttributeComponent: Sets shape of graph element to which the attribute of this component belongs.
setGraphElementShape(GraphElementShape) - Method in class org.graffiti.plugin.view.AttributeComponent: Sets shape of graph element to which the attribute of this component belongs.
setGraphics(Graphics) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Entry
setGraphicsType(kgmlGraphicsType) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Graphics
setGraphInstance(Graph) - Method in class org.graffiti.plugin.algorithm.ThreadSafeOptions: DOCUMENT ME!
setGraphPath(String) - Static method in class org.graffiti.plugins.ios.importers.PortableUrlService: Set the path of, presumably, currently loading graph.
setGraphToNull() - Method in class org.graffiti.graph.AdjListEdge
setGreen(int) - Method in class org.graffiti.graphics.ColorAttribute: Sets the 'green'-value.
setGroup(DatasetGroup) - Method in class org.jfree.data.AbstractDataset: Sets the dataset group for the dataset.
setGroup(DatasetGroup) - Method in interface org.jfree.data.Dataset: Sets the dataset group.
setGroupDescription(String) - Method in class qmwi.kseg.som.DataSet
setGroupName(String[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggPathwayEntry
setGroupPaint(Paint) - Method in class org.jfree.chart.renderer.MinMaxCategoryRenderer: Sets the paint of the line between the minimum value and the maximum value.
setGroupStroke(Stroke) - Method in class org.jfree.chart.renderer.MinMaxCategoryRenderer: Sets the stroke of the line between the minimum value and the maximum value.
setGrowthconditions(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
setGrowthconditions(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
setGUI(ScenarioGui) - Static method in class scenario.ScenarioService
setGUIcomponent(String, JComponent) - Method in class org.graffiti.editor.MainFrame
setHasOnlySubstanceUnits(Node, Boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper: Sets the attribute hasOnlySubstanceUnits of a species node
setHeader(ExperimentHeaderInterface) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment
setHeader(ExperimentHeaderInterface) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface
setHeight(double) - Method in class org.graffiti.graphics.DimensionAttribute: Sets the 'height'-value.
setHeight(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Graphics
setHeight(Node, double) - Static method in class org.AttributeHelper
setHelpIntroductionText(String) - Static method in class org.ReleaseInfo
setHidden(boolean) - Method in class org.graffiti.plugin.view.AttributeComponent
setHidden(boolean, GraphElement) - Static method in class org.AttributeHelper
setHidden(boolean, Node, boolean, boolean, boolean) - Static method in class org.AttributeHelper
setHidden(Collection<GraphElement>, boolean) - Static method in class org.AttributeHelper
setHidden(Set<GraphElement>, boolean) - Static method in class org.AttributeHelper
setHiddenLabel(Node, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper: Sets the hidden label of a species node
setHideDeactivateSwitch(MainFrame.HideOrDeactivateMenu) - Static method in class org.graffiti.editor.MainFrame
setHidePlot(boolean) - Method in class org.jfree.chart.JFreeChart
setHighlight(boolean) - Method in class org.graffiti.plugins.attributecomponents.simplelabel.ViewLabel
setHighlightPaint(Paint) - Method in class org.jfree.chart.needle.MeterNeedle: Sets the highlight paint.
setHistoryCount(int) - Method in class org.jfree.data.time.TimeSeries: Sets the number of time units in the 'history' for the series.
setHollow(boolean) - Method in class org.graffiti.plugins.views.defaults.AbsoluteStimulationArrowShape
setHollow(boolean) - Method in class org.graffiti.plugins.views.defaults.AssignmentArrowShape
setHollow(boolean) - Method in class org.graffiti.plugins.views.defaults.CircleArrowShape
setHollow(boolean) - Method in class org.graffiti.plugins.views.defaults.DiamondArrowShape
setHollow(boolean) - Method in class org.graffiti.plugins.views.defaults.StandardArrowShape
setHollow(boolean) - Method in class org.graffiti.plugins.views.defaults.StandardArrowShapeLeft
setHollow(boolean) - Method in class org.graffiti.plugins.views.defaults.StandardArrowShapeRight
setHollow(boolean) - Method in interface org.graffiti.plugins.views.defaults.SupportsHollowDrawing
setHollow(boolean) - Method in class org.graffiti.plugins.views.defaults.TriggerArrowShape
setHorizontalAlignment(HorizontalAlignment) - Method in class org.jfree.chart.title.Title: Sets the horizontal alignment for the title and sends a TitleChangeEvent to all registered listeners.
setHorizontalAxisTrace(boolean) - Method in class org.jfree.chart.ChartPanel: A flag that controls trace lines on the horizontal axis.
setHorizontalZoom(boolean) - Method in class org.jfree.chart.ChartPanel: A flag that controls mouse-based zooming on the horizontal axis.
setIcon(ImageIcon) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.Addon
setIcon(ImageIcon) - Method in class org.graffiti.plugin.inspector.InspectorTab
setIconImage(Image) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.DBEsplashScreen
setIconSize(FolderPanel.Iconsize) - Method in class org.FolderPanel
setId(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.KeggId
setId(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Reaction
setId(String) - Method in class org.graffiti.attributes.AbstractAttribute
setId(String) - Method in interface org.graffiti.attributes.Attribute
setId(String) - Method in class org.graffiti.attributes.AttributeDescription
setID(long) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
setID(long) - Method in class org.graffiti.graph.AbstractGraphElement
setID(long) - Method in interface org.graffiti.graph.GraphElement
setID(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartment
setID(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
setID(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLFunctionDefinition
setID(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLParameter
setID(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLUnitDefinition
setID(Edge, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setID(Node, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter
setID(Node, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setID(Node, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper: Sets the id of a species node
setIfGreater(int) - Method in class org.ObjectRef
setIfLess(int) - Method in class org.ObjectRef
setIgnoreEdgeDirection(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.naive_pattern_finder.NaivePatternFinderAlgorithm
setIgnoreNode(int, boolean) - Method in class qmwi.kseg.som.Map
setIgnoreNullValues(boolean) - Method in class org.jfree.chart.plot.PiePlot: Sets a flag that controls whether null values are ignored, and sends a PlotChangeEvent to all registered listeners.
setImage(Image) - Method in class org.graffiti.graphics.AWTImageAttribute: Sets the 'image'-value.
setImage(Image) - Method in class org.jfree.chart.title.ImageTitle: Sets the image for the title and notifies registered listeners that the title has been modified.
setImage(AWTImageAttribute) - Method in class org.graffiti.graphics.ImageAttribute: Sets the 'image'-value.
setImportdate(Date) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader
setImportdate(Date) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface
setImportusergroup(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader
setImportusergroup(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface
setImportusername(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader
setImportusername(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface
setIncludeTooltip(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams
setIncludeURLinTooltip(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams
setIncompletePaint(Paint) - Method in class org.jfree.chart.renderer.GanttRenderer: Sets the paint used to show the percentage incomplete and sends a RendererChangeEvent to all registered listeners.
setIndex(int) - Method in class org.jfree.chart.entity.ContourEntity: Sets the index.
setInEdge(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.AttributePathNameSearchType
setInfo(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
setInfo(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
setIngoing(CollectionAttribute) - Method in class org.graffiti.graphics.PortsAttribute: Sets the 'ingoing'-value.
setInitialAmount(Node, Double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper: Sets the initial amount of a node
setInitialConcentration(Node, Double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper: Sets the initial concentration of a node
setInitialDelay(int) - Method in class org.jfree.chart.ChartPanel: Specifies the initial delay value for this chart panel.
setInitialisationFinished() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.ClusterSplashScreen
setInitialisationFinished() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.DBEsplashScreen
setInitialisationFinished() - Method in class org.graffiti.editor.SplashScreen
setInitialisationFinished() - Method in interface org.graffiti.editor.SplashScreenInterface
setInitialValue(Boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
setInnerGap(Spacer) - Method in class org.jfree.chart.StandardLegend: Sets the inner gap for the legend and sends a LegendChangeEvent to all registered listeners.
setInNode(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.AttributePathNameSearchType
setInputVector(double[]) - Method in class qmwi.kseg.som.diagram.ClassesObject: Insert the method's description here.
setInputVector(double[]) - Method in class qmwi.kseg.som.diagram.ClassesObjectInputVector: Insert the method's description here.
setInsets(Insets) - Method in class org.jfree.chart.plot.Plot: Sets the insets for the plot and notifies registered listeners that the plot has been modified.
setInsets(Insets, boolean) - Method in class org.jfree.chart.plot.Plot: Sets the insets for the plot and, if requested, notifies registered listeners that the plot has been modified.
setInt(int) - Method in class org.graffiti.plugin.algorithm.ThreadSafeOptions
setInteger(int) - Method in class org.graffiti.attributes.IntegerAttribute: Sets the value of this object.
setInteger(String, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
setInteger(String, int) - Method in class org.graffiti.attributes.AbstractAttributable: Sets the Attribute at the given path to the given value.
setInteger(String, int) - Method in interface org.graffiti.attributes.Attributable: Sets the Attribute at the given path to the given value.
setInteriorGap(double) - Method in class org.jfree.chart.plot.PiePlot: Sets the interior gap and sends a PlotChangeEvent to all registered listeners.
setIntervalPositionFactor(double) - Method in class org.jfree.data.CategoryTableXYDataset: Sets the interval position factor.
setIntervalPositionFactor(double) - Method in class org.jfree.data.DefaultTableXYDataset: Sets the interval position factor.
setIntervalPositionFactor(double) - Method in class org.jfree.data.XYSeriesCollection: Sets the interval position factor.
setIntervalWidth(double) - Method in class org.jfree.data.CategoryTableXYDataset: Sets the interval width manually.
setIntervalWidth(double) - Method in class org.jfree.data.DefaultTableXYDataset: Sets the interval width manually.
setIntervalWidth(double) - Method in class org.jfree.data.XYSeriesCollection: Sets the interval width.
setInverse(boolean) - Method in class org.jfree.chart.ui.ColorPalette: Sets the inverse flag.
setInverted(boolean) - Method in class org.jfree.chart.axis.ValueAxis: Sets a flag that controls the direction of values on the axis, and notifies registered listeners that the axis has changed.
setIsAddon(boolean) - Method in class org.graffiti.plugin.GenericPluginAdapter
setIsAutoLoopDuration(boolean) - Method in class org.vanted.animation.Animator: Sets whether the animator is automatically calculating the animator loop duration.
setIsFirstRun(boolean) - Static method in class org.ReleaseInfo
setIsMetric(boolean) - Method in class org.graffiti.editor.Rule
setIsOptional(String) - Method in class org.graffiti.managers.pluginmgr.PluginDescription
setIsOptionalDefaultTrue(String) - Method in class org.graffiti.managers.pluginmgr.PluginDescription
setIsOutlier(boolean, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint
setIsPartOfGroup(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Entry
setIsPartOfGroup(Node, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setIsPriorityPlugin(String) - Method in class org.graffiti.managers.pluginmgr.PluginDescription
setItem(int) - Method in class org.jfree.chart.entity.XYItemEntity: Sets the item index.
setItemFont(Font) - Method in class org.jfree.chart.StandardLegend: Sets the series label font and sends a LegendChangeEvent to all registered listeners.
setItemLabelAnchor(ItemLabelAnchor) - Method in class org.jfree.chart.renderer.AbstractRenderer: Deprecated.
Use setPositiveItemLabelPosition()/setNegativeItemLabelPosition().
setItemLabelAnchor(ItemLabelAnchor) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Deprecated.
Use setPositiveItemLabelPosition() or setNegativeItemLabelPosition().
setItemLabelAnchorOffset(double) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the item label anchor offset.
setItemLabelAngle(Number) - Method in class org.jfree.chart.renderer.AbstractRenderer: Deprecated.
Use setPositiveItemLabelPosition()/setNegativeItemLabelPosition().
setItemLabelFont(Font) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the item label font for ALL series and sends a RendererChangeEvent to all registered listeners.
setItemLabelFont(Font) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the item label font for ALL series and sends a RendererChangeEvent to all registered listeners.
setItemLabelFont(Font) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the item label font for ALL series and sends a RendererChangeEvent to all registered listeners.
setItemLabelFont(Font, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the item label font for ALL series and, if requested, sends a RendererChangeEvent to all registered listeners.
setItemLabelPaint(Paint) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the item label paint for ALL series and sends a RendererChangeEvent to all registered listeners.
setItemLabelPaint(Paint) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the item label paint for ALL series and sends a RendererChangeEvent to all registered listeners.
setItemLabelPaint(Paint) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the item label paint for ALL series and sends a RendererChangeEvent to all registered listeners.
setItemLabelPaint(Paint, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the item label paint for ALL series and, if requested, sends a RendererChangeEvent to all registered listeners.
setItemLabelRotationAnchor(TextAnchor) - Method in class org.jfree.chart.renderer.AbstractRenderer: Deprecated.
Use setPositiveItemLabelPosition()/setNegativeItemLabelPosition().
setItemLabelsVisible(boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the visibility of the item labels for ALL series.
setItemLabelsVisible(boolean) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets a flag that controls whether or not the item labels for ALL series are visible.
setItemLabelsVisible(boolean) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets a flag that controls whether or not the item labels for ALL series are visible.
setItemLabelsVisible(Boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the visibility of the item labels for ALL series (optional).
setItemLabelsVisible(Boolean) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets a flag that controls whether or not the item labels for ALL series are visible.
setItemLabelsVisible(Boolean) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets a flag that controls whether or not the item labels for ALL series are visible.
setItemLabelsVisible(Boolean, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the visibility of item labels for ALL series and, if requested, sends a RendererChangeEvent to all registered listeners.
setItemLabelsVisible(Boolean, boolean) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the visibility of item labels for ALL series and, if requested, sends a RendererChangeEvent to all registered listeners.
setItemLabelsVisible(Boolean, boolean) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the visibility of item labels for ALL series and, if requested, sends a RendererChangeEvent to all registered listeners.
setItemLabelTextAnchor(TextAnchor) - Method in class org.jfree.chart.renderer.AbstractRenderer: Deprecated.
Use setPositiveItemLabelPosition()/setNegativeItemLabelPosition().
setItemLabelTextAnchor(TextAnchor) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Deprecated.
Use setPositiveItemLabelPosition() or setNegativeItemLabelPosition().
setItemMargin(double) - Method in class org.jfree.chart.renderer.BarRenderer: Sets the item margin and sends a RendererChangeEvent to all registered listeners.
setItemMargin(double) - Method in class org.jfree.chart.renderer.BoxAndWhiskerRenderer: Sets the item margin.
setItemMargin(double) - Method in class org.jfree.chart.renderer.LevelRenderer: Sets the item margin.
setItemPaint(Paint) - Method in class org.jfree.chart.StandardLegend: Sets the series label paint and sends a LegendChangeEvent to all registered listeners.
setItemSeparator(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.WebsiteGeneration
setItemURLGenerator(CategoryURLGenerator) - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer: Sets the item URL generator for ALL series.
setItemURLGenerator(CategoryURLGenerator) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the item URL generator for ALL series.
SetJavaMemoryMacOS - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings: This class will take care of setting the available memory for Vanted by manipulating the Pinfo.list file found in the app bundle of Mac application distributions.
SetJavaMemoryMacOS() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings.SetJavaMemoryMacOS
setKeggGraphicsBgColor(Node, Color) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKeggGraphicsFgColor(Node, Color) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKeggGraphicsHeight(Node, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKeggGraphicsLineStyleIndirect(Edge) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKeggGraphicsLineStyleInhibitionArrow(Edge) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKeggGraphicsLineStyleMap(Edge) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKeggGraphicsTitle(Node, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKeggGraphicsType(Node, kgmlGraphicsType) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKeggGraphicsWidth(Node, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKeggGraphicsX(Node, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKeggGraphicsY(Node, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKEGGhiddenCompoundInformation(Edge, String) - Static method in class org.AttributeHelper
setKeggId(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKeggId(Node, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKeggId(Node, String, int) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKeggImageUrl(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKeggLinkUrl(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKeggLinkUrl(Node, int, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKeggLinkUrl(Node, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKeggMapNumber(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.special.EnzymeStatisticInformation
setKeggMapNumber(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKeggOrg(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKeggReaction(Node, int, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKeggReactionProduct(Edge, int, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKeggReactionSubstrate(Edge, int, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKeggReactionType(Attributable, int, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKeggTitle(Graph, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKeggType(GraphElement, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.GraphHelperBio
setKeggType(Node, int, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKeggType(Node, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setKey(Comparable) - Method in class org.jfree.data.xml.ItemHandler: Sets the key.
setKgmlVersion(String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggHelper
setKodefinition(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KoEntry
setKoentryID(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KoEntry
setKoname(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.kegg.KoEntry
setL(double) - Method in class org.color.Color_CIE_Lab
setLabel(int, GraphElement, String, String, String) - Static method in class org.AttributeHelper
setLabel(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.GraphElementHelper
setLabel(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
setLabel(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.VTextIcon: sets the label to the given string, updating the orientation as needed and invalidating the layout if the size changes
setLabel(String) - Method in class org.graffiti.graphics.LabelAttribute: Sets the 'label'-value.
setLabel(String) - Method in class org.jfree.chart.axis.Axis: Sets the label for the axis and sends an AxisChangeEvent to all registered listeners.
setLabel(String) - Method in class org.jfree.chart.plot.Marker: Sets the label (if null no label is displayed).
setLabel(Edge, String) - Static method in class org.AttributeHelper: Sets the Label of a Edge
setLabel(Edge, String, String) - Static method in class org.AttributeHelper: Sets the label of an edge
setLabel(GraphElement, String) - Static method in class org.AttributeHelper
setLabel(GraphElement, String) - Static method in class org.graffiti.util.GeneralEditorUtils: Searches if the given Attributable already contains a LabelAttribute.
setLabel(Node, String) - Static method in class org.AttributeHelper: Sets the Label of a Node.
setLabel(Node, String, String, String) - Static method in class org.AttributeHelper: Sets the label of a node.
setLabel(Node, String, String, PositionGridGenerator) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setLabel(Node, String, String, PositionGridGenerator) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper: Sets the label of a node.
setLabelAlignment(int, AlignmentSetting) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper: Set Label Position relative to the node.
setLabelAlignment(int, Node, AlignmentSetting) - Static method in class org.AttributeHelper
setLabelAnchor(RectangleAnchor) - Method in class org.jfree.chart.plot.Marker: Sets the label anchor.
setLabelAngle(double) - Method in class org.jfree.chart.axis.Axis: Sets the angle for the label and sends an AxisChangeEvent to all registered listeners.
setLabelAsSingleUniqueListDivideByDivider - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.SetLabelModeOfOperation
setLabelBackgroundPaint(Paint) - Method in class org.jfree.chart.plot.PiePlot: Sets the section label background paint and sends a PlotChangeEvent to all registered listeners.
setLabelColor(int, GraphElement, Color) - Static method in class org.AttributeHelper
setLabelConsumption(Edge, String) - Static method in class org.AttributeHelper
setLabelCreateTableCreateColumns - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.SetLabelModeOfOperation
setLabelCreateTableCreateRows - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.SetLabelModeOfOperation
setLabelCreateTableUseExistingLabelAsTableHeaderCreateColumns - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.SetLabelModeOfOperation
setLabelCreateTableUseExistingLabelAsTableHeaderCreateRows - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.SetLabelModeOfOperation
setLabelFont(Font) - Method in class org.jfree.chart.axis.Axis: Sets the font for the axis label and sends an AxisChangeEvent to all registered listeners.
setLabelFont(Font) - Method in class org.jfree.chart.plot.CompassPlot: Sets the label font.
setLabelFont(Font) - Method in class org.jfree.chart.plot.Marker: Sets the label font.
setLabelFont(Font) - Method in class org.jfree.chart.plot.PiePlot: Sets the section label font and sends a PlotChangeEvent to all registered listeners.
setLabelFontSize(int, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
setLabelFrameStyle(int, Node, LabelFrameSetting) - Static method in class org.AttributeHelper
setLabelFromAllMappingsDivideByDivider - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.SetLabelModeOfOperation
setLabelGap(double) - Method in class org.jfree.chart.plot.PiePlot: Sets the gap between the edge of the pie and the labels (expressed as a percentage of the plot width) and sends a PlotChangeEvent to all registered listeners.
setLabelGenerator(CategoryLabelGenerator) - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer: Sets the label generator for ALL series and sends a RendererChangeEvent to all registered listeners.
setLabelGenerator(CategoryLabelGenerator) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the item label generator for ALL series and sends a RendererChangeEvent to all registered listeners.
setLabelGenerator(PieSectionLabelGenerator) - Method in class org.jfree.chart.plot.PiePlot: Sets the section label generator and sends a PlotChangeEvent to all registered listeners.
setLabelGenerator(XYLabelGenerator) - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer: Sets the item label generator for ALL series and sends a RendererChangeEvent to all registered listeners.
setLabelGenerator(XYLabelGenerator) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the item label generator for ALL series and sends a RendererChangeEvent to all registered listeners.
setLabelInsets(Insets) - Method in class org.jfree.chart.axis.Axis: Sets the insets for the axis label, and sends an AxisChangeEvent to all registered listeners.
setLabelLinkMargin(double) - Method in class org.jfree.chart.plot.PiePlot: Sets the link margin and sends a PlotChangeEvent to all registered listeners.
setLabelLinkPaint(Paint) - Method in class org.jfree.chart.plot.PiePlot: Sets the paint used for the lines that connect pie sections to their corresponding labels, and sends a PlotChangeEvent to all registered listeners.
setLabelLinkStroke(Stroke) - Method in class org.jfree.chart.plot.PiePlot: Sets the link stroke and sends a PlotChangeEvent to all registered listeners.
SetLabelModeOfOperation - Enum in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids
setLabelOffset(double) - Method in class org.jfree.chart.annotations.XYPointerAnnotation: Sets the label offset (from the arrow base, continuing in a straight line, in Java2D units).
setLabelOffset(double, double) - Method in class org.graffiti.graphics.LabelAttribute: Set the relative offset of label position from center of a node.
setLabelOffset(Attributable, double, double) - Static method in class org.AttributeHelper: Set the relative offset of label position from center of a node.
setLabelOffset(RectangleInsets) - Method in class org.jfree.chart.plot.Marker: Sets the label offset.
setLabelOutlinePaint(Paint) - Method in class org.jfree.chart.plot.PiePlot: Sets the section label outline paint and sends a PlotChangeEvent to all registered listeners.
setLabelOutlineStroke(Stroke) - Method in class org.jfree.chart.plot.PiePlot: Sets the section label outline stroke and sends a PlotChangeEvent to all registered listeners.
setLabelPaint(Paint) - Method in class org.jfree.chart.axis.Axis: Sets the paint used to draw the axis label and sends an AxisChangeEvent to all registered listeners.
setLabelPaint(Paint) - Method in class org.jfree.chart.plot.Marker: Sets the label paint.
setLabelPaint(Paint) - Method in class org.jfree.chart.plot.PiePlot: Sets the section label paint and sends a PlotChangeEvent to all registered listeners.
setLabelPosition(Point2D) - Method in class org.jfree.chart.DrawableLegendItem: Sets the label position.
setLabelPosition(Node, String) - Static method in class org.AttributeHelper
setLabelProduction(Edge, String) - Static method in class org.AttributeHelper
setLabelShadowPaint(Paint) - Method in class org.jfree.chart.plot.PiePlot: Sets the section label shadow paint and sends a PlotChangeEvent to all registered listeners.
setLabelText(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.JLabelHTMLlink
setLabelTextAnchor(TextAnchor) - Method in class org.jfree.chart.plot.Marker: Sets the label text anchor.
setLabelType(int) - Method in class org.jfree.chart.plot.CompassPlot: Sets the label type.
setLastBarPaint(Paint) - Method in class org.jfree.chart.renderer.WaterfallBarRenderer: Sets the paint that will be used to draw the last bar.
setLastComponentHeight(int) - Method in class org.graffiti.graphics.LabelAttribute
setLastComponentWidth(int) - Method in class org.graffiti.graphics.LabelAttribute
setLastLabel(JLabel) - Method in class org.graffiti.graphics.LabelAttribute
setLastUseAverageSetting(boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMplugin
setLatestAngle(double) - Method in class org.jfree.chart.plot.PiePlotState: Sets the latest angle.
setLayoutOfChartComponent(GraphElement, JComponent, Integer) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ChartOptions
setLeft(double) - Method in class org.jfree.chart.axis.AxisSpace: Sets the left space.
setLeftAligned(boolean) - Method in class org.graffiti.plugin.parameter.AbstractSingleParameter
setLeftArrow(Shape) - Method in class org.jfree.chart.axis.ValueAxis: Sets the shape that can be displayed as an arrow pointing left at the end of an axis line and sends an AxisChangeEvent to all registered listeners.
setLeftCategoryLabelPosition(CategoryLabelPosition) - Method in class org.jfree.chart.axis.CategoryAxis: Deprecated.
Use setCategoryLabelPositions(...).
setLegend(Legend) - Method in class org.jfree.chart.JFreeChart: Sets the chart legend.
setLegendText(String) - Method in class org.jfree.chart.MeterLegend: Sets the legend text.
setLimit(double) - Method in class org.jfree.chart.plot.MultiplePiePlot: Sets the limit below which pie sections are aggregated.
setLine(Line2D) - Method in class org.jfree.chart.DrawableLegendItem: Sets the line used to label this series.
setLineMode(LineModeAttribute) - Method in class org.graffiti.graphics.GraphElementGraphicAttribute: Sets the 'lineMode'-value.
setLines(int) - Method in class org.jfree.chart.demo.Performance: Creates one line, then repeatedly calls the setLine method.
setLineStroke(Stroke) - Method in class org.jfree.chart.DrawableLegendItem: Sets the line stroke used to render the line for this series.
setLinesVisible(boolean) - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer: Sets a flag that controls whether or not lines are drawn between the items in ALL series, and sends a RendererChangeEvent to all registered listeners.
setLinesVisible(Boolean) - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer: Sets a flag that controls whether or not lines are drawn between the items in ALL series, and sends a RendererChangeEvent to all registered listeners.
setLineType(String) - Method in class org.graffiti.graphics.EdgeGraphicAttribute: DOCUMENT ME!
setLink(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Entry
setLinkArea(Rectangle2D) - Method in class org.jfree.chart.plot.PiePlotState: Sets the label link area.
setListenerManager(ListenerManager) - Method in class org.graffiti.graph.AdjListGraph
setListenerManager(ListenerManager) - Method in interface org.graffiti.graph.Graph
setListenerManager(ListenerManager) - Method in class org.graffiti.plugin.inspector.EditPanel: Sets the ListenerManager.
setListenerManager(ListenerManager) - Method in class org.graffiti.plugins.inspectors.defaults.DefaultEditPanel: Sets the ListenerManager.
setLoadOnStartup(Boolean) - Method in class org.graffiti.managers.pluginmgr.DefaultPluginEntry: Sets the flag indicating whether a plugin should be loaded on the startup of the editor.
setLoadOnStartup(Boolean) - Method in interface org.graffiti.managers.pluginmgr.PluginEntry: Sets the flag indicating whether a plugin should be loaded on the startup of the editor.
setLoadOnStartup(String, Boolean) - Method in class org.graffiti.managers.pluginmgr.DefaultPluginManager: Sets the loadOnStartup flag of the given object, to the given value.
setLoadOnStartup(String, Boolean) - Method in interface org.graffiti.managers.pluginmgr.PluginManager: Sets the loadOnStartup flag of the given object, to the given value.
setLocalAlign(double) - Method in class org.graffiti.graphics.NodeLabelPositionAttribute: Sets the localAlign.
setLog10TickLabelsFlag(boolean) - Method in class org.jfree.chart.axis.LogarithmicAxis: Sets the 'log10TickLabelsFlag' flag.
setLogicalConnection(LogicConnection) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption
setLogscale(boolean) - Method in class org.jfree.chart.ui.ColorPalette: Sets the 'log-scale' flag.
setLong(long) - Method in class org.graffiti.attributes.LongAttribute: Set the value of this Object.
setLong(long) - Method in class org.graffiti.plugin.algorithm.ThreadSafeOptions
setLong(String, long) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
setLong(String, long) - Method in class org.graffiti.attributes.AbstractAttributable: Sets the Attribute at the given path to the given value.
setLong(String, long) - Method in interface org.graffiti.attributes.Attributable: Sets the Attribute at the given path to the given value.
setLookAndFeel() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.GravistoMainHelper
setLoopDuration(double) - Method in class org.vanted.animation.Animation: Sets the duration of a loop.
setLoopDuration(double) - Method in class org.vanted.animation.Animator: Sets the duration of a loop.
setLoopDuration(long, TimeUnit) - Method in class org.vanted.animation.Animation: Sets the duration of a loop.
setLoopDuration(long, TimeUnit) - Method in class org.vanted.animation.Animator: Sets the duration of a loop.
setLoopDuration(LoopDuration) - Method in class org.vanted.animation.Animation: Sets the duration of a loop.
setLoopDuration(LoopDuration) - Method in class org.vanted.animation.Animator: Sets the duration of a loop.
setLooper(Looper) - Method in class org.vanted.animation.Animation: Sets the looper of the animation: How the animation handles looping.
setLowerBound(double) - Method in class org.jfree.chart.axis.ValueAxis: Sets the lower bound for the axis range.
setLowerBound(double) - Method in class org.jfree.chart.plot.ThermometerPlot: Sets the lower bound for the thermometer.
setLowerMargin(double) - Method in class org.jfree.chart.axis.CategoryAxis: Sets the lower margin for the axis and sends an AxisChangeEvent to all registered listeners.
setLowerMargin(double) - Method in class org.jfree.chart.axis.ValueAxis: Sets the lower margin for the axis (as a percentage of the axis range) and sends an AxisChangeEvent to all registered listeners.
setMacOSsettings(String) - Static method in class org.AttributeHelper
setMain(String) - Method in class org.graffiti.managers.pluginmgr.PluginDependency: Sets the main.
setMain(String) - Method in class org.graffiti.managers.pluginmgr.PluginDescription: Sets the main.
setMainFrame(MainFrame) - Method in class org.graffiti.plugin.gui.AbstractGraffitiComponent
setMainFrame(MainFrame) - Method in class org.graffiti.plugin.gui.GraffitiButton
setMainFrame(MainFrame) - Method in class org.graffiti.plugin.gui.GraffitiMenu
setMainFrame(MainFrame) - Method in class org.graffiti.plugin.gui.GraffitiMenuItem
setMapName(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggPathwayEntry
setMappedData(Element, Element) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance: Dataset, transformed for data mapping: <substance id="" name=""> <line experimentname="" genotype="WT" growthconditions="" id="1" name= "Unknown 1" treatment="" variety=""> <sample id="" measurementtool="" time="26" unit="day"> <average max="" min="" replicates="1" stddev="0.0" unit= "units">48.5313748658488</average> <data replicates="" unit="">48.5313748658488</data> </sample> ...
setMappedData(Element, Element) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface: Dataset, transformed for data mapping: <substance id="" name=""> <line experimentname="" genotype="WT" growthconditions="" id="1" name= "Unknown 1" treatment="" variety=""> <sample id="" measurementtool="" time="26" unit="day"> <average max="" min="" replicates="1" stddev="0.0" unit= "units">48.5313748658488</average> <data replicates="" unit="">48.5313748658488</data> </sample> ...
setMappingCount(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggPathwayEntry
setMapRef(IdRef) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Entry
setMargin(double) - Method in class org.jfree.chart.renderer.ClusteredXYBarRenderer: Sets the margin.
setMargin(double) - Method in class org.jfree.chart.renderer.XYBarRenderer: Sets the percentage amount by which the bars are trimmed and sends a RendererChangeEvent to all registered listeners.
setMark(boolean) - Method in class org.MarkComponent
setMarkColor(Color, Color) - Method in class org.MarkComponent
setMarker(Shape) - Method in class org.jfree.chart.DrawableLegendItem: Set the marker.
setMarkerBand(MarkerAxisBand) - Method in class org.jfree.chart.axis.NumberAxis: Sets the marker band for the axis.
setMarkerFilled(boolean) - Method in class org.jfree.chart.DrawableLegendItem: Sets a flag that controls whether or not the marker is filled.
setMarkOffset(double) - Method in class org.jfree.chart.renderer.SignalRenderer: Sets the mark offset.
setMax(double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverage
setMax(double) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverageInterface
setMax(double) - Method in class org.jfree.chart.axis.AxisState: Sets the maximum width/height.
setMax(Double) - Method in class org.graffiti.plugin.parameter.DoubleParameter
setMax(Float) - Method in class org.graffiti.plugin.parameter.FloatParameter
setMaxBarWidth(double) - Method in class org.jfree.chart.renderer.BarRenderer: Sets the maximum bar width, which is specified as a percentage of the available space for all bars, and sends a RendererChangeEvent to all registered listeners.
setMaxBytes(long) - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.MyOutputStream
setMaxCandleWidthInMilliseconds(double) - Method in class org.jfree.chart.renderer.CandlestickRenderer: Sets the maximum candle width (in milliseconds).
setMaxCategoryLabelWidthRatio(float) - Method in class org.jfree.chart.axis.CategoryAxis: Sets the maximum category label width ratio and sends an AxisChangeEvent to all registered listeners.
setMaxChipX(int) - Method in class org.jfree.data.WaferMapDataset: Sets wafer x dimension.
setMaxChipY(int) - Method in class org.jfree.data.WaferMapDataset: Sets the number of chips in the y-dimension.
setMaxHeight(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams
setMaxIcon(Icon) - Method in class org.jfree.chart.renderer.MinMaxCategoryRenderer: Sets the icon used to indicate the maximum value.
setMaximize(boolean) - Method in class org.graffiti.graphics.ImageAttribute: Sets the 'maximize'-value.
setMaximum(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.ClusterSplashScreen
setMaximum(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.DBEsplashScreen
setMaximum(int) - Method in class org.graffiti.editor.SplashScreen
setMaximum(int) - Method in interface org.graffiti.editor.SplashScreenInterface
setMaximum(int) - Method in interface org.graffiti.util.ProgressViewer: Sets the progress viewer's maximum value to n.
setMaximumAxisValue(double) - Method in class org.jfree.chart.axis.ValueAxis: Deprecated.
Use setUpperBound(...).
setMaximumDate(Date) - Method in class org.jfree.chart.axis.DateAxis: Sets the maximum date visible on the axis.
setMaximumDrawHeight(int) - Method in class org.jfree.chart.ChartPanel: Sets the maximum drawing height for the chart on this panel.
setMaximumDrawWidth(int) - Method in class org.jfree.chart.ChartPanel: Sets the maximum drawing width for the chart on this panel.
setMaximumItemCount(int) - Method in class org.jfree.data.time.TimeSeries: Sets the maximum number of items that will be retained in the series.
setMaximumItemCount(int) - Method in class org.jfree.data.XYSeries: Sets the maximum number of items that will be retained in the series.
setMaximumLabelWidth(double) - Method in class org.jfree.chart.plot.PiePlot: Sets the maximum label width as a percentage of the plot width and sends a PlotChangeEvent to all registered listeners.
setMaximumRowCount(int) - Method in class org.FolderPanel
setMaximumRowCount(int, boolean) - Method in class org.FolderPanel
setMaximumValue(double) - Method in class org.jfree.chart.axis.ColorBar: Sets the maximum value.
setMaxItemWidth(double) - Method in class org.jfree.chart.renderer.LevelRenderer: Sets the maximum item width, which is specified as a percentage of the available space for all items, and sends a RendererChangeEvent to all registered listeners.
setMaxNodeHeight(HashMap<Integer, Double>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.TreeContainer
setMaxWidth(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams
setMaxZ(double) - Method in class org.jfree.chart.ui.ColorPalette: Sets the maximum Z value.
setMeasurementtool(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample
setMeasurementtool(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface
setMeasurementUnit(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataFileReader
setMeasurementValue(double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ReplicateDouble
setMenuGroup(String) - Method in class scenario.Scenario
setMercuryPaint(Paint) - Method in class org.jfree.chart.plot.ThermometerPlot: Sets the default mercury paint.
setMessage(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLConstraint
setMetaId(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLConstraint
setMetaId(Node, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.KineticLawHelper
setMetaID(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLAlgebraicRule
setMetaID(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLAssignmentRule
setMetaID(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartment
setMetaID(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventAssignmentHelper
setMetaID(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
setMetaID(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLFunctionDefinition
setMetaID(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLInitialAssignment
setMetaID(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLParameter
setMetaID(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLRateRule
setMetaID(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLUnit
setMetaID(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLUnitDefinition
setMetaID(Node, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter
setMetaID(Node, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setMetaID(Node, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper: Sets the attribute meta id of a species node
setMetaIDModifier(Edge, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setMetaIDProduct(Edge, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setMetaIDReactant(Edge, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setMeterAngle(int) - Method in class org.jfree.chart.plot.MeterPlot: Sets the range through which the dial's needle is free to rotate.
setMin(double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverage
setMin(double) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverageInterface
setMin(Double) - Method in class org.graffiti.plugin.parameter.DoubleParameter
setMin(Float) - Method in class org.graffiti.plugin.parameter.FloatParameter
setMinIcon(Icon) - Method in class org.jfree.chart.renderer.MinMaxCategoryRenderer: Sets the icon used to indicate the minimum value.
setMinimumArcAngleToDraw(double) - Method in class org.jfree.chart.plot.PiePlot: Sets the minimum arc angle that will be drawn.
setMinimumAxisValue(double) - Method in class org.jfree.chart.axis.ValueAxis: Deprecated.
Use setLowerBound(...).
setMinimumBarLength(double) - Method in class org.jfree.chart.renderer.BarRenderer: Sets the minimum bar length and sends a RendererChangeEvent to all registered listeners.
setMinimumDate(Date) - Method in class org.jfree.chart.axis.DateAxis: Sets the minimum date visible on the axis.
setMinimumDrawHeight(int) - Method in class org.jfree.chart.ChartPanel: Sets the minimum drawing height for the chart on this panel.
setMinimumDrawWidth(int) - Method in class org.jfree.chart.ChartPanel: Sets the minimum drawing width for the chart on this panel.
setMinimumValue(double) - Method in class org.jfree.chart.axis.ColorBar: Sets the minimum value.
setMinus(IndexedNodeSet) - Method in class org.vanted.indexednodes.IndexedNodeSet
setMinZ(double) - Method in class org.jfree.chart.ui.ColorPalette: Sets the minimum Z value.
setMissingPaint(Paint) - Method in class org.jfree.chart.plot.ContourPlot: Sets the missingPaint.
setModel(XYDataset) - Method in class org.jfree.data.XYDatasetTableModel: Sets the model (dataset).
setModified(boolean) - Method in class org.graffiti.graph.AdjListGraph
setModified(boolean) - Method in interface org.graffiti.graph.Graph: Should be set to False after saving changes and to True after making changes to the Graph.
setMouseZoomable(boolean) - Method in class org.jfree.chart.ChartPanel: A flag that controls mouse-based zooming.
setMouseZoomable(boolean, boolean) - Method in class org.jfree.chart.ChartPanel: Controls mouse zooming and how the zoom rectangle is displayed
setMultiple(boolean) - Method in class org.jfree.chart.renderer.OutlierList: Sets the flag that indicates whether or not this list represents multiple outliers.
setMultiSplitVerticalNonPrefHeight_Contents(Collection<?>, double, JPanel) - Static method in class info.clearthought.layout.TableLayout
setName(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
setName(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
setName(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Graphics
setName(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartment
setName(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
setName(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLFunctionDefinition
setName(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLParameter
setName(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLUnitDefinition
setName(String) - Method in class org.graffiti.graph.AdjListGraph
setName(String) - Method in interface org.graffiti.graph.Graph: The name can be retrieved with the method getName.
setName(String) - Method in class org.graffiti.graphics.Port: Sets the name.
setName(String) - Method in class org.graffiti.graphics.PortAttribute: Sets the 'name'-value.
setName(String) - Method in class org.graffiti.managers.pluginmgr.PluginDependency: Sets the name.
setName(String) - Method in class org.graffiti.managers.pluginmgr.PluginDescription: Sets the name.
setName(String) - Method in class org.graffiti.selection.Selection: Sets the name.
setName(String) - Method in class org.jfree.data.Series: Sets the name of the series.
setName(String) - Method in class scenario.Scenario
setName(Edge, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setName(Node, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter
setNeedlePaint(Paint) - Method in class org.jfree.chart.plot.MeterPlot: Sets the paint used to display the needle.
setNegativeArrowVisible(boolean) - Method in class org.jfree.chart.axis.ValueAxis: Sets a flag that controls whether or not the axis lines has an arrow drawn that points in the negative direction for the axis, and sends an AxisChangeEvent to all registered listeners.
setNegativeBarPaint(Paint) - Method in class org.jfree.chart.renderer.WaterfallBarRenderer: Sets the paint that will be used to draw bars having negative values.
setNegativeItemLabelPosition(ItemLabelPosition) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the item label position for negative values in ALL series, and sends a RendererChangeEvent to all registered listeners.
setNegativeItemLabelPosition(ItemLabelPosition) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the item label position for negative values in ALL series, and sends a RendererChangeEvent to all registered listeners.
setNegativeItemLabelPosition(ItemLabelPosition) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the item label position for negative values in ALL series, and sends a RendererChangeEvent to all registered listeners.
setNegativeItemLabelPosition(ItemLabelPosition, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the item label position for negative values in ALL series and (if requested) sends a RendererChangeEvent to all registered listeners.
setNegativeItemLabelPosition(ItemLabelPosition, boolean) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the item label position for negative values in ALL series and (if requested) sends a RendererChangeEvent to all registered listeners.
setNegativeItemLabelPosition(ItemLabelPosition, boolean) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the item label position for negative values in ALL series and (if requested) sends a RendererChangeEvent to all registered listeners.
setNegativeItemLabelPositionFallback(ItemLabelPosition) - Method in class org.jfree.chart.renderer.BarRenderer: Sets the fallback position for negative item labels that don't fit within a bar, and sends a RendererChangeEvent to all registered listeners.
setNegativePaint(Paint) - Method in class org.jfree.chart.renderer.XYDifferenceRenderer: Sets the paint used to highlight negative differences.
setNeuron(double[]) - Method in class qmwi.kseg.som.diagram.ClassesClass: Insert the method's description here.
setNewBlast(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
setNewBlast(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
setNewBlastEval(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
setNewBlastEval(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
setNewBlastScore(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
setNewBlastScore(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
setNewData(RecentEntry) - Method in class org.graffiti.editor.RecentEntry
setNewMarked(Map<GraphElement, GraphElement>) - Method in class org.graffiti.selection.Selection: Sets the list of graph elements that have been marked but the selection listeners have not yet been notified.
setNewUnmarked(Map<GraphElement, GraphElement>) - Method in class org.graffiti.selection.Selection: Sets the list of graph elements that have been unmarked but the selection listeners have not yet been notified.
setNextOrientationTopBottom(boolean) - Static method in class org.graffiti.plugins.ios.exporters.graphviz.DOTSerializer
setNiceId(String, String) - Static method in class org.AttributeHelper: Memorize a attribute description, shown in the node, edge and graph tabs, for display instead of a attribute name.
setNoDataMessage(String) - Method in class org.jfree.chart.plot.Plot: Sets the message that is displayed when the dataset is empty or null.
setNoDataMessageFont(Font) - Method in class org.jfree.chart.plot.Plot: Sets the font used to display the 'no data' message.
setNoDataMessagePaint(Paint) - Method in class org.jfree.chart.plot.Plot: Sets the paint used to display the 'no data' message.
setNodeComponentType(GraphElement, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.NodeTools
setNodeFirst(Node) - Method in class org.graffiti.graph.AdjListGraph: The given node is moved to the front of the node list.
setNodeGraphicsAttribute(double, double, double, double, double, Color, Color, CollectionAttribute) - Static method in class org.AttributeHelper
setNodeLast(Node) - Method in class org.graffiti.graph.AdjListGraph: The given node is moved to the end of the node list.
setNoLoops(int) - Method in class org.vanted.animation.Animation: Sets the number of times that the animation will perform the animation before stopping.
setNoLoops(int) - Method in class org.vanted.animation.Animator: Sets the number of times the animator will perform a loop.
setNoLoops(NumberOfLoops) - Method in class org.vanted.animation.Animation: Sets the number of times that the animation will perform the animation before stopping.
setNoLoops(NumberOfLoops) - Method in class org.vanted.animation.Animator: The number of times the animator will perform a loop.
setNonRDFAnnotation(Node, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.KineticLawHelper
setNonRDFAnnotation(Node, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter
setNonRDFAnnotation(Node, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setNonRDFAnnotation(Node, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper
setNonRDFAnnotation(XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLAlgebraicRule
setNonRDFAnnotation(XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLAssignmentRule
setNonRDFAnnotation(XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartment
setNonRDFAnnotation(XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLConstraint
setNonRDFAnnotation(XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventAssignmentHelper
setNonRDFAnnotation(XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
setNonRDFAnnotation(XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLFunctionDefinition
setNonRDFAnnotation(XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLInitialAssignment
setNonRDFAnnotation(XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLParameter
setNonRDFAnnotation(XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLRateRule
setNonRDFAnnotation(XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLUnit
setNonRDFAnnotation(XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLUnitDefinition
setNonRDFAnnotationModifier(Edge, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setNonRDFAnnotationProduct(Edge, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setNonRDFAnnotationReactant(Edge, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setNormalPaint(Paint) - Method in class org.jfree.chart.plot.MeterPlot: Sets the paint used to display the 'normal' range.
setNormalRange(Number, Number) - Method in class org.jfree.data.DefaultMeterDataset: Deprecated.

Sets the normal range for the dataset.
setNormalRange(Range) - Method in class org.jfree.chart.plot.MeterPlot: Sets the normal range for the dial.
setNotes(String, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLAlgebraicRule
setNotes(String, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLAssignmentRule
setNotes(String, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartment
setNotes(String, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLConstraint
setNotes(String, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventAssignmentHelper
setNotes(String, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
setNotes(String, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLFunctionDefinition
setNotes(String, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLInitialAssignment
setNotes(String, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLParameter
setNotes(String, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLRateRule
setNotes(String, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLUnit
setNotes(String, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLUnitDefinition
setNotes(Node, String, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.KineticLawHelper
setNotes(Node, String, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter
setNotes(Node, String, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setNotes(Node, String, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper: Sets the attribute notes of a species node
setNotesModifier(Edge, String, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setNotesProduct(Edge, String, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setNotesReactant(Edge, String, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setNotify(boolean) - Method in class org.jfree.chart.JFreeChart: Sets a flag that controls whether or not listeners receive ChartChangeEvent notifications.
setNotify(boolean) - Method in class org.jfree.chart.title.Title: Sets the flag that indicates whether or not the notification mechanism is enabled.
setNotify(boolean) - Method in class org.jfree.data.Series: Sets the flag that controls whether or not change events are sent to registered listeners.
setNumberFormatOverride(NumberFormat) - Method in class org.jfree.chart.axis.NumberAxis: Sets the number format override.
setNumberOfFiles(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader
setNumberOfFiles(int) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface
setNumberOfPages(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.DefaultPageable
SetNumericAttributeFromDataAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms
SetNumericAttributeFromDataAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.SetNumericAttributeFromDataAlgorithm
setObject(int, ClassesObject) - Method in class qmwi.kseg.som.diagram.ClassesClass: Insert the method's description here.
setObject(Comparable, Object) - Method in class org.jfree.data.KeyedObjects: Replaces an existing object, or adds a new object to the collection.
setObject(Object) - Method in class org.jfree.data.KeyedObject: Sets the object.
setObject(Object) - Method in class org.ObjectRef
setObject(Object, Comparable, Comparable) - Method in class org.jfree.data.KeyedObjects2D: Adds or updates an object.
setObjectIcon(Icon) - Method in class org.jfree.chart.renderer.MinMaxCategoryRenderer: Sets the icon used to indicate the values.
setObjectIndex(int) - Method in class qmwi.kseg.som.diagram.ClassesObjectInputVector: Insert the method's description here.
setOfAllIn(Collection<Node>) - Static method in class org.vanted.indexednodes.IndexedNodeSet: Constructs an set with the given node collection as basic collection, containing all nodes from the basis collection.
setOfContainedNodesWithOwnIndices() - Method in class org.vanted.indexednodes.IndexedNodeSet
setOffset(double) - Method in class org.jfree.chart.axis.CyclicNumberAxis: The cycle bound is a multiple of the period, plus optionally a start offset.
setOldValueZooming(int) - Static method in class org.vanted.scaling.vanted.GraphScaler
setOpacity(double) - Method in class org.graffiti.graphics.GraphElementGraphicAttribute: Sets the opacity of a graph element (node or edge) This value will also influence the opacity of all dependent graph attribute components.
setOpacity(int) - Method in class org.graffiti.graphics.ColorAttribute: Sets the 'opacity'-value.
setOpacity(GraphElement, double) - Static method in class org.AttributeHelper: Sets the opacity of a given graph element This value will also influence the opacity of dependent Graph Attribute Components (Labels, Charts, etc)
setOptions(String, ArrayList<KeggPathwayEntry>, Color) - Method in class de.ipk_gatersleben.ag_nw.graffiti.KeggSoapAndPathwayService
setOptX(Double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionDatapoint
setOptY(Double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionDatapoint
setOrientation(PlotOrientation) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the orientation for the plot and sends a PlotChangeEvent to all registered listeners.
setOrientation(PlotOrientation) - Method in class org.jfree.chart.plot.CombinedDomainCategoryPlot: Sets the orientation of the plot (and all subplots).
setOrientation(PlotOrientation) - Method in class org.jfree.chart.plot.CombinedDomainXYPlot: Sets the orientation for the plot (also changes the orientation for all the subplots to match).
setOrientation(PlotOrientation) - Method in class org.jfree.chart.plot.CombinedRangeCategoryPlot: Sets the orientation for the plot (and all the subplots).
setOrientation(PlotOrientation) - Method in class org.jfree.chart.plot.CombinedRangeXYPlot: Sets the orientation for the plot (and all its subplots).
setOrientation(PlotOrientation) - Method in class org.jfree.chart.plot.XYPlot: Sets the orientation for the plot.
setOuterGap(Spacer) - Method in class org.jfree.chart.StandardLegend: Sets the outer gap for the legend and sends a LegendChangeEvent to all registered listeners.
setOutgoing(CollectionAttribute) - Method in class org.graffiti.graphics.PortsAttribute: Sets the 'outgoing'-value.
setOutlierCoefficient(double) - Method in class org.jfree.data.statistics.DefaultBoxAndWhiskerXYDataset: Sets the value used as the outlier coefficient
setOutline(boolean) - Method in class org.jfree.chart.renderer.AreaXYRenderer: Deprecated.

Sets a flag that controls whether or not outlines of the areas are drawn.
setOutline(boolean) - Method in class org.jfree.chart.renderer.XYAreaRenderer: Sets a flag that controls whether or not outlines of the areas are drawn.
setOutline(boolean) - Method in class org.jfree.chart.renderer.XYAreaRenderer2: Sets a flag that controls whether or not outlines of the areas are drawn.
setOutline(boolean) - Method in class org.jfree.chart.renderer.XYStepAreaRenderer: Sets a flag that controls whether or not outlines of the areas are drawn, and sends a RendererChangeEvent to all registered listeners.
setOutlineColor(Attributable, Color) - Static method in class org.AttributeHelper: Sets the outline color of a given Atttibutable.
setOutlineColorHEX(Attributable, String) - Static method in class org.AttributeHelper
setOutlinePaint(Paint) - Method in class org.jfree.chart.needle.MeterNeedle: Sets the outline paint.
setOutlinePaint(Paint) - Method in class org.jfree.chart.plot.JThermometer: Sets the outline paint.
setOutlinePaint(Paint) - Method in class org.jfree.chart.plot.Marker: Sets the outline paint.
setOutlinePaint(Paint) - Method in class org.jfree.chart.plot.Plot: Sets the paint used to draw the outline of the plot area and sends a PlotChangeEvent to all registered listeners.
setOutlinePaint(Paint) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the outline paint for ALL series (optional).
setOutlinePaint(Paint) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the outline paint for ALL series (optional).
setOutlinePaint(Paint) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the outline paint for ALL series (optional).
setOutlinePaint(Paint) - Method in class org.jfree.chart.StandardLegend: Sets the outline paint and sends a LegendChangeEvent to all registered listeners.
setOutlinePaint(Paint, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the outline paint for ALL series and, if requested, sends a RendererChangeEvent to all registered listeners.
setOutlineShapes(boolean) - Method in class org.jfree.chart.StandardLegend: Sets the flag that controls whether or not outlines are drawn around shapes, and sends a LegendChangeEvent to all registered listeners.
setOutlineStroke(Stroke) - Method in class org.jfree.chart.needle.MeterNeedle: Sets the outline stroke.
setOutlineStroke(Stroke) - Method in class org.jfree.chart.plot.Marker: Sets the outline stroke.
setOutlineStroke(Stroke) - Method in class org.jfree.chart.plot.Plot: Sets the stroke used to outline the plot area and sends a PlotChangeEvent to all registered listeners.
setOutlineStroke(Stroke) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the outline stroke for ALL series and sends a RendererChangeEvent to all registered listeners.
setOutlineStroke(Stroke) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the outline stroke for ALL series and sends a RendererChangeEvent to all registered listeners.
setOutlineStroke(Stroke) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the outline stroke for ALL series and sends a RendererChangeEvent to all registered listeners.
setOutlineStroke(Stroke) - Method in class org.jfree.chart.StandardLegend: Sets the outline stroke and sends a LegendChangeEvent to all registered listeners.
setOutlineStroke(Stroke, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the outline stroke for ALL series and, if requested, sends a RendererChangeEvent to all registered listeners.
setOutside(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartment
setPadding(Spacer) - Method in class org.jfree.chart.plot.ThermometerPlot: Sets the padding for the thermometer.
setPaint(Paint) - Method in class org.jfree.chart.annotations.TextAnnotation: Sets the paint for the annotation.
setPaint(Paint) - Method in class org.jfree.chart.plot.FastScatterPlot: Sets the color for the data points and sends a PlotChangeEvent to all registered listeners.
setPaint(Paint) - Method in class org.jfree.chart.plot.Marker: Sets the paint.
setPaint(Paint) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the paint to be used for ALL series, and sends a RendererChangeEvent to all registered listeners.
setPaint(Paint) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the paint to be used for ALL series, and sends a RendererChangeEvent to all registered listeners.
setPaint(Paint) - Method in class org.jfree.chart.renderer.XYBoxAndWhiskerRenderer: Sets the paint used to fill boxes.
setPaint(Paint) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the paint to be used for ALL series, and sends a RendererChangeEvent to all registered listeners.
setPaint(Paint) - Method in class org.jfree.chart.title.TextTitle: Sets the paint used to display the title string.
setPaint(Paint, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the paint to be used for all series and, if requested, sends a RendererChangeEvent to all registered listeners.
setPalette(ColorPalette) - Method in class org.jfree.chart.ui.PaletteSample: Sets the palette object being displayed.
setPaletteName(String) - Method in class org.jfree.chart.ui.ColorPalette: Sets the palette name.
setParam(int, Object) - Method in class org.graffiti.plugin.algorithm.ThreadSafeOptions: DOCUMENT ME!
setParameter(String, Object) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
setParameter(String, Object) - Method in interface org.graffiti.plugin.editcomponent.ValueEditComponent
setParameter(String, Object) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter
setParameter(String, Object) - Method in class org.graffiti.plugins.editcomponents.defaults.StringEditComponent
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.circle_search.CircleSearchAndLayoutAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping.DataMapping
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.ColorizeAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.DavidTestAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.GrubbsTestAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.BarabasiAlbertGraphGenerator
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.ErdosRenyiGraphGenerator
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.graph_generation.WattsStrogatzGraphGenerator
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.hamming_distance.HammingDistanceAlgorithm: Sets parameters
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.RatioViewAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.SubstanceRatioCalculationAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.AllPathsSelectionAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.ShortestPathSelectionAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.WeightedShortestPathSelectionAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMclusterAnalysis
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMclusterAnalysisDoCluster
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMprintDataset
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.ImageAssignmentCommand
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.AddDiagramLegendAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.ColorScaleLegendAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.ExtractMappingDataAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.SetNumericAttributeFromDataAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.alt_id_statistics.AlternativeIDannotationStatistics
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.CombineMappingData
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.CreateFuncatGraphAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.ClusterHistogramFisherTest
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.CreateGOchildrenClustersHistogramAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go.InterpreteGOtermsAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.hierarchies.CreateKEGGOrthologyGraphAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.hierarchy.HierarchyWizard
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.MergeNodes
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectEdgesAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.selectCommands.SelectNodesWithExperimentalDataAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.SplitNodeForSingleMappingData
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.ColorizeSuperGraphAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.CreateOrgSpecificSuperGraphsAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.MergeWindowsAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.SelectWindowsAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.rotate.RotateAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph.ApplyGraphLayout
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.CircleLayouterAlgorithm: Sets the radius parameter to the given value.
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.CircleLayouterWithMinimumCrossingsAlgorithm: Sets the radius parameter and the minimize edge crossings flag to the given values.
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.DotLayoutAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_no_overlapp.NoOverlappLayoutAlgorithm: Sets the radius parameter to the given value.
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.expand_reduce_space.ExpandReduceLayouterAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fd_edge_routing.ForceDirectedEdgeLayout
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.fish_eye.FishEyeLayout
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid_placement.GridPlacementAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.grid.GridLayouterAlgorithm: Sets parameters
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.no_overlapp_as_tim.NoOverlappLayoutAlgorithmAS: Sets the radius parameter to the given value.
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache.PatternSpringembedder: DOCUMENT ME!
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.AddRandomClusterInformationAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BringToFrontOrBackAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BundleParallelEdges
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ClusterGraphLayout
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ClusterIndividualLayout
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.CreateClusterGraphAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.IntroduceBendsAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.IntroduceParallelEdgeBends
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.IntroduceSelfEdgeBends
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.PajekClusterColor
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.RemoveBendsAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.RemoveParallelEdges
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ResizeNodesDepDegreeAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SetClusterInfoAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SortIntoCluster
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder3d
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.radial_tree.RadialTreeLayout
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.random.RandomLayouterAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.ArrayLayout: Sets parameters
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.GridLayoutAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.resize_and_grid_layout.ResizeFromMappingCountLayoutAlgorithm: Sets parameters
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.MultiTreeLayout
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.RTTreeLayout
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.springembedder_1.SpringEmbedderAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.tree_simple.GraphTreeLayout
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.AddInterestingAttributes
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.CalculateAttribute
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup.DeleteNodesAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup.NumberNodesAndEdgesAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.HideOrShowChildNodes
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.CopyDataTableAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ExpandSelectionAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ExportDataTableAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.FindReplaceDialog
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.InvertSelectionAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.RemoveSelectedNodesPreserveEdgesAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchAndSelecAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SetToolTipAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SetURLAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.EnrichHiddenLabelsAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.RemoveParenthesisLabels
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.label_editing.ReplaceLabelAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayReferenceAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayReferenceAutoCreationAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.ppt_exporter.PPTAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.AdditionalIdentifiersAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.process_alternative_ids.ReplaceLabelFromAlternativeSubstanceNames
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PDFAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PDFSVGAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithm
setParameters(Parameter[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SVGAlgorithm
setParameters(Parameter[]) - Method in class org.graffiti.editor.dialog.ParameterEditPanel: Sets the paramter array this panel displays.
setParameters(Parameter[]) - Method in class org.graffiti.plugin.algorithm.AbstractAlgorithm
setParameters(Parameter[]) - Method in interface org.graffiti.plugin.algorithm.Algorithm: Sets the parameters for this algorithm.
setParameters(Parameter[]) - Method in class org.vanted.plugins.layout.adaptagrams.edgerouting.EdgeRoutingAlgorithm
setParameters(Parameter[]) - Method in class org.vanted.plugins.layout.multilevelframework.ForceDirectedLayoutWrapper
setParameters(Parameter[]) - Method in interface org.vanted.plugins.layout.multilevelframework.Merger: Called by the Multilevel Framework when the user updates the parameters.
setParameters(Parameter[]) - Method in class org.vanted.plugins.layout.multilevelframework.MultilevelFrameworkLayout
setParameters(Parameter[]) - Method in interface org.vanted.plugins.layout.multilevelframework.Parameterizable: Provides a list of Parameters that should be accepted by the implementing class.
This setter should only be called if the implementing class is not currently executing something else.
setParameters(Parameter[]) - Method in interface org.vanted.plugins.layout.multilevelframework.Placer: Called by the Multilevel Framework when the user updates the parameters.
setParameters(Parameter[]) - Method in class org.vanted.plugins.layout.multilevelframework.RandomMerger
setParameters(Parameter[]) - Method in class org.vanted.plugins.layout.multilevelframework.RandomPlacer: Sets Parameters, this implementation automatically tries to assign the maximum place distance if given as a Parameter.
setParameters(Parameter[]) - Method in class org.vanted.plugins.layout.multilevelframework.SolarMerger
setParameters(Parameter[]) - Method in class org.vanted.plugins.layout.multilevelframework.SolarPlacer
setParameters(Parameter[]) - Method in class org.vanted.plugins.layout.stressminimization.BackgroundExecutionAlgorithm
setParameters(Parameter[]) - Method in class org.vanted.plugins.layout.stressminimization.StressMinimizationLayout: Deprecated.
setParams(PngJpegAlgorithmParams) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithm
setParent(ConditionInterface) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample
setParent(ConditionInterface) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface
setParent(SubstanceInterface) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
setParent(SubstanceInterface) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
setParent(CollectionAttribute) - Method in class org.graffiti.attributes.AbstractAttribute: Sets the attribute's parent.
setParent(CollectionAttribute) - Method in interface org.graffiti.attributes.Attribute: Sets the Attribute's parent.
setParent(Plot) - Method in class org.jfree.chart.plot.Plot: Sets the parent plot.
setParentSample(SampleInterface) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurement
setParentSample(SampleInterface) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurementInterface
setPassesRequired(int) - Method in class org.jfree.chart.plot.PiePlotState: Sets the number of passes required by the renderer.
setPath(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.RestApiBiomodels
setPath(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.web.RestService
setPath(ArrayList<String>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.web.RestService
setPathwayName(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggPathwayEntry
setPathwayReference(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
setPathwayReference(Attributable, int, String) - Static method in class org.AttributeHelper
setPathwayReference(GraphElement, String) - Static method in class org.AttributeHelper
setPatternNodeDistance(double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.CircleLayouterAlgorithm
setPercent(int) - Method in class org.jfree.chart.event.ChartProgressEvent: Sets the percentage complete.
setPercentComplete(double) - Method in class org.jfree.data.gantt.Task: Sets the percentage complete for the task.
setPercentComplete(Double) - Method in class org.jfree.data.gantt.Task: Sets the percentage complete for the task.
setPerformRecreationOfView(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayReferenceAutoCreationAlgorithm
setPeriod(double) - Method in class org.jfree.chart.axis.CyclicNumberAxis: The cycle bound is a multiple of the period, plus optionally a start offset.
setPersistent(Boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
setPieArea(Rectangle2D) - Method in class org.jfree.chart.plot.PiePlotState: Sets the pie area.
setPieCenterX(double) - Method in class org.jfree.chart.plot.PiePlotState: Sets the x-coordinate of the center of the pie chart.
setPieCenterY(double) - Method in class org.jfree.chart.plot.PiePlotState: Sets the y-coordinate of the center of the pie chart.
setPieChart(JFreeChart) - Method in class org.jfree.chart.plot.MultiplePiePlot: Sets the chart that is used to draw the individual pie plots.
setPieHRadius(double) - Method in class org.jfree.chart.plot.PiePlotState: Sets the vertical pie radius.
setPieIndex(int) - Method in class org.jfree.chart.entity.PieSectionEntity: Sets the pie index.
setPieIndex(int) - Method in class org.jfree.chart.plot.PiePlot: Sets the pie index (this is used by the MultiplePiePlot class to track subplots).
setPieWRadius(double) - Method in class org.jfree.chart.plot.PiePlotState: Sets the horizontal pie radius.
setPlot(CategoryPlot) - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer: Sets the plot that the renderer has been assigned to.
setPlot(CategoryPlot) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the plot that the renderer has been assigned to.
setPlot(Plot) - Method in class org.jfree.chart.axis.Axis: Sets a reference to the plot that the axis is assigned to.
setPlot(PolarPlot) - Method in class org.jfree.chart.renderer.DefaultPolarItemRenderer: Set the plot associated with this renderer.
setPlot(PolarPlot) - Method in interface org.jfree.chart.renderer.PolarItemRenderer: Sets the plot that this renderer is assigned to.
setPlot(WaferMapPlot) - Method in class org.jfree.chart.renderer.WaferMapRenderer: Sets the plot and build the paint index.
setPlot(XYPlot) - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer: Sets the plot that the renderer is assigned to.
setPlot(XYPlot) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the plot that this renderer is assigned to.
setPlotArea(boolean) - Method in class org.jfree.chart.renderer.XYStepAreaRenderer: Sets a flag that controls whether or not areas are drawn for each data item.
setPlotArea(Rectangle2D) - Method in class org.jfree.chart.ChartRenderingInfo: Sets the area in which the plot and axes were drawn.
setPlotArea(Rectangle2D) - Method in class org.jfree.chart.plot.PlotRenderingInfo: Sets the plot area.
setPlotImages(boolean) - Method in class org.jfree.chart.renderer.StandardXYItemRenderer: Sets the flag that controls whether or not an image is drawn at each data point.
setPlotLines(boolean) - Method in class org.jfree.chart.renderer.StandardXYItemRenderer: Sets the flag that controls whether or not a line is plotted between each data point.
setPlotShapes(boolean) - Method in class org.jfree.chart.renderer.StandardXYItemRenderer: Sets the flag that controls whether or not a shape is plotted at each data point.
setPlotShapes(boolean) - Method in class org.jfree.chart.renderer.XYDifferenceRenderer: Sets a flag that controls whether or not shapes are drawn for each data value.
setPlotShapes(boolean) - Method in class org.jfree.chart.renderer.XYStepAreaRenderer: Sets the flag that controls whether or not shapes are displayed for each data item.
setPlotShowing(boolean) - Method in class org.jfree.chart.plot.Plot
setPlugin(GenericPlugin) - Method in class org.graffiti.managers.pluginmgr.DefaultPluginEntry: Sets the plugin.
setPlugin(GenericPlugin) - Method in interface org.graffiti.managers.pluginmgr.PluginEntry: Sets the plugin.
setPluginDescription(PluginDescription) - Method in class org.graffiti.managers.pluginmgr.PluginXMLParser: Sets the internal temporary plugin description to the given value.
setPluginLocation(URL) - Method in class org.graffiti.managers.pluginmgr.DefaultPluginEntry: Sets the plugin location.
setPluginLocation(URL) - Method in interface org.graffiti.managers.pluginmgr.PluginEntry: Sets the plugin location.
setPluginWaitsForUser(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskStatusProviderSupportingExternalCallImpl
setPoint(Point2D) - Method in class org.jfree.chart.renderer.Outlier: Sets the xy coordinates of the bounding box containing the outlier ellipse.
setPopupMenu(JPopupMenu) - Method in class org.jfree.chart.ChartPanel: Sets the popup menu for the panel.
setPorts(PortsAttribute) - Method in class org.graffiti.graphics.NodeGraphicAttribute: Sets the 'ports'-value.
setPosition(double, double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
setPosition(int) - Method in class org.jfree.data.time.DynamicTimeSeriesCollection: Sets the x position type (START, MIDDLE or END).
setPosition(int) - Method in class org.jfree.data.time.TimePeriodValuesCollection: Deprecated.
Use setXPosition(...).
setPosition(int) - Method in class org.jfree.data.time.TimeSeriesCollection: Deprecated.
Use setXPosition(...).
setPosition(Point2D) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
setPosition(Node, double, double) - Static method in class org.AttributeHelper: Sets the position of a node
setPosition(Node, Point2D) - Static method in class org.AttributeHelper: Sets the position of a node
setPosition(Node, Vector2d) - Static method in class org.AttributeHelper
setPosition(EdgeLabelPositionAttribute) - Method in class org.graffiti.graphics.EdgeLabelAttribute: Sets the 'position'-value.
setPosition(NodeLabelPositionAttribute) - Method in class org.graffiti.graphics.NodeLabelAttribute: Sets the 'position'-value.
setPosition(RectangleEdge) - Method in class org.jfree.chart.title.Title: Sets the position for the title and sends a TitleChangeEvent to all registered listeners.
setPosition3d(Node, double, double, double) - Static method in class org.AttributeHelper
setPositions(LinkedHashSet<Double>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation
setPositionUnits(LinkedHashSet<String>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation
setPositionZ(Node, double) - Static method in class org.AttributeHelper
setPositiveArrowVisible(boolean) - Method in class org.jfree.chart.axis.ValueAxis: Sets a flag that controls whether or not the axis lines has an arrow drawn that points in the positive direction for the axis, and sends an AxisChangeEvent to all registered listeners.
setPositiveBarPaint(Paint) - Method in class org.jfree.chart.renderer.WaterfallBarRenderer: Sets the paint that will be used to draw bars having positive values.
setPositiveItemLabelPosition(ItemLabelPosition) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the item label position for positive values in ALL series, and sends a RendererChangeEvent to all registered listeners.
setPositiveItemLabelPosition(ItemLabelPosition) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the item label position for positive values in ALL series, and sends a RendererChangeEvent to all registered listeners.
setPositiveItemLabelPosition(ItemLabelPosition) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the item label position for positive values in ALL series, and sends a RendererChangeEvent to all registered listeners.
setPositiveItemLabelPosition(ItemLabelPosition, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the positive item label position for ALL series and (if requested) sends a RendererChangeEvent to all registered listeners.
setPositiveItemLabelPosition(ItemLabelPosition, boolean) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the positive item label position for ALL series and (if requested) sends a RendererChangeEvent to all registered listeners.
setPositiveItemLabelPosition(ItemLabelPosition, boolean) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the positive item label position for ALL series and (if requested) sends a RendererChangeEvent to all registered listeners.
setPositiveItemLabelPositionFallback(ItemLabelPosition) - Method in class org.jfree.chart.renderer.BarRenderer: Sets the fallback position for positive item labels that don't fit within a bar, and sends a RendererChangeEvent to all registered listeners.
setPositivePaint(Paint) - Method in class org.jfree.chart.renderer.XYDifferenceRenderer: Sets the paint used to highlight positive differences.
setPreferredHeight(int) - Method in class org.graffiti.editor.Rule
setPreferredTabPosition(int) - Method in class org.graffiti.plugin.inspector.InspectorTab
setPreferredWidth(double) - Method in class org.jfree.chart.StandardLegend: Sets the preferred width of the legend bounding box.
setPreferredWidth(int) - Method in class org.graffiti.editor.Rule
setPrefix(String) - Method in class org.graffiti.plugin.io.resources.IOurl
setPrefs(Preferences) - Method in class org.graffiti.plugin.tool.AbstractTool
setPrefs(Preferences) - Method in interface org.graffiti.plugin.tool.Tool: Sets the preferences of this tool.
setPrintFooter(boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.PrintEnvironment
setPrintHeader(boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.PrintEnvironment
setPriorityAnnotation(Annotation) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
setPriorityFunction(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
setPriorityMetaID(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
setPriorityNonRDFAnnotation(XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
setPriorityNotes(String, XMLNode) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
setPrioritySBOTerm(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
setProcessMultipleViews(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithm
setProducts(Collection<Entry>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Reaction
setPtSizePct(double) - Method in class org.jfree.chart.plot.ContourPlot: Sets the ptSizePct.
setQuadrantOrigin(Point2D) - Method in class org.jfree.chart.plot.XYPlot: Sets the quadrant origin and sends a PlotChangeEvent to all registered listeners.
setQuadrantPaint(int, Paint) - Method in class org.jfree.chart.plot.XYPlot: Sets the paint used for the specified quadrant and sends a PlotChangeEvent to all registered listeners.
setQualityAnnotation(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurement
setQualityAnnotation(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurementInterface
setRadialAxis(ValueAxis) - Method in class org.jfree.chart.plot.PolarPlot: Sets the radius axis for the plot.
setRadius(double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.circle.CircleLayouterAlgorithm
setRadius(double) - Method in class org.jfree.chart.renderer.Outlier: Sets the radius of the outlier ellipse.
setRadiusGridlinePaint(Paint) - Method in class org.jfree.chart.plot.PolarPlot: Sets the paint for the grid lines plotted against the radius axis.
setRadiusGridlineStroke(Stroke) - Method in class org.jfree.chart.plot.PolarPlot: Sets the stroke for the grid lines plotted against the radius axis.
setRadiusGridlinesVisible(boolean) - Method in class org.jfree.chart.plot.PolarPlot: Sets the flag that controls whether or not the radius axis grid lines are visible.
setRange(double, double) - Method in class org.jfree.chart.axis.DateAxis: Sets the axis range.
setRange(double, double) - Method in class org.jfree.chart.axis.ValueAxis: Sets the axis range and sends an AxisChangeEvent to all registered listeners.
setRange(double, double) - Method in class org.jfree.chart.plot.JThermometer: Sets the lower and upper bounds for the thermometer.
setRange(double, double) - Method in class org.jfree.chart.plot.ThermometerPlot: Sets the lower and upper bounds for the thermometer.
setRange(Number, Number) - Method in class org.jfree.data.DefaultMeterDataset: Deprecated.

Sets the range for the dataset.
setRange(Date, Date) - Method in class org.jfree.chart.axis.DateAxis: Sets the axis range.
setRange(Range) - Method in class org.jfree.chart.axis.DateAxis: Sets the upper and lower bounds for the axis and sends an AxisChangeEvent to all registered listeners.
setRange(Range) - Method in class org.jfree.chart.axis.LogarithmicAxis: Overridden version that calls original and then sets up flag for log axis processing.
setRange(Range) - Method in class org.jfree.chart.axis.ValueAxis: Sets the range attribute and sends an AxisChangeEvent to all registered listeners.
setRange(Range) - Method in class org.jfree.chart.plot.MeterPlot: Sets the overall range for the dial.
setRange(Range, boolean, boolean) - Method in class org.jfree.chart.axis.CyclicNumberAxis: Sets a new axis range.
setRange(Range, boolean, boolean) - Method in class org.jfree.chart.axis.DateAxis: Sets the range for the axis, if requested, sends an AxisChangeEvent to all registered listeners.
setRange(Range, boolean, boolean) - Method in class org.jfree.chart.axis.ValueAxis: Sets the range for the axis, if requested, sends an AxisChangeEvent to all registered listeners.
setRangeAboutValue(double, double) - Method in class org.jfree.chart.axis.ValueAxis: Sets the axis range, where the new range is 'size' in length, and centered on 'value'.
setRangeAxis(int, ValueAxis) - Method in class org.jfree.chart.plot.CategoryPlot: Sets a range axis.
setRangeAxis(int, ValueAxis) - Method in class org.jfree.chart.plot.XYPlot: Sets a range axis and sends a PlotChangeEvent to all registered listeners.
setRangeAxis(ValueAxis) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the range axis for the plot and sends a PlotChangeEvent to all registered listeners.
setRangeAxis(ValueAxis) - Method in class org.jfree.chart.plot.ContourPlot: Sets the range axis for the plot.
setRangeAxis(ValueAxis) - Method in class org.jfree.chart.plot.ThermometerPlot: Sets the range axis for the plot.
setRangeAxis(ValueAxis) - Method in class org.jfree.chart.plot.XYPlot: Sets the range axis for the plot and sends a PlotChangeEvent to all registered listeners.
setRangeAxisLocation(int, AxisLocation) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the location for a range axis and sends a PlotChangeEvent to all registered listeners.
setRangeAxisLocation(int, AxisLocation) - Method in class org.jfree.chart.plot.XYPlot: Sets the location for a range axis and sends a PlotChangeEvent to all registered listeners.
setRangeAxisLocation(int, AxisLocation, boolean) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the location for a range axis and sends a PlotChangeEvent to all registered listeners.
setRangeAxisLocation(AxisLocation) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the location of the range axis and sends a PlotChangeEvent to all registered listeners.
setRangeAxisLocation(AxisLocation) - Method in class org.jfree.chart.plot.XYPlot: Sets the location of the primary range axis and sends a PlotChangeEvent to all registered listeners.
setRangeAxisLocation(AxisLocation, boolean) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the location of the range axis and, if requested, sends a PlotChangeEvent to all registered listeners.
setRangeAxisLocation(AxisLocation, boolean) - Method in class org.jfree.chart.plot.XYPlot: Sets the location of the primary range axis and, if requested, sends a PlotChangeEvent to all registered listeners.
setRangeBase(double) - Method in class org.jfree.chart.renderer.XYStepAreaRenderer: Sets the value on the range axis which defines the default border of the area.
setRangeCrosshairLockedOnData(boolean) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the flag indicating whether or not the range crosshair should "lock-on" to actual data values.
setRangeCrosshairLockedOnData(boolean) - Method in class org.jfree.chart.plot.ContourPlot: Sets the flag indicating whether or not the range crosshair should "lock-on" to actual data values.
setRangeCrosshairLockedOnData(boolean) - Method in class org.jfree.chart.plot.XYPlot: Sets the flag indicating whether or not the range crosshair should "lock-on" to actual data values.
setRangeCrosshairPaint(Paint) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the Paint used to color the crosshairs (if visible) and notifies registered listeners that the axis has been modified.
setRangeCrosshairPaint(Paint) - Method in class org.jfree.chart.plot.ContourPlot: Sets the Paint used to color the crosshairs (if visible) and notifies registered listeners that the axis has been modified.
setRangeCrosshairPaint(Paint) - Method in class org.jfree.chart.plot.XYPlot: Sets the Paint used to color the crosshairs (if visible) and notifies registered listeners that the axis has been modified.
setRangeCrosshairStroke(Stroke) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the pen-style (Stroke) used to draw the crosshairs (if visible).
setRangeCrosshairStroke(Stroke) - Method in class org.jfree.chart.plot.ContourPlot: Sets the Stroke used to draw the crosshairs (if visible) and notifies registered listeners that the axis has been modified.
setRangeCrosshairStroke(Stroke) - Method in class org.jfree.chart.plot.XYPlot: Sets the Stroke used to draw the crosshairs (if visible) and notifies registered listeners that the axis has been modified.
setRangeCrosshairValue(double) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the domain crosshair value.
setRangeCrosshairValue(double) - Method in class org.jfree.chart.plot.ContourPlot: Sets the domain crosshair value.
setRangeCrosshairValue(double) - Method in class org.jfree.chart.plot.XYPlot: Sets the domain crosshair value.
setRangeCrosshairValue(double, boolean) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the range crosshair value.
setRangeCrosshairValue(double, boolean) - Method in class org.jfree.chart.plot.ContourPlot: Sets the range crosshair value.
setRangeCrosshairValue(double, boolean) - Method in class org.jfree.chart.plot.XYPlot: Sets the range crosshair value.
setRangeCrosshairVisible(boolean) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the flag indicating whether or not the range crosshair is visible.
setRangeCrosshairVisible(boolean) - Method in class org.jfree.chart.plot.ContourPlot: Sets the flag indicating whether or not the range crosshair is visible.
setRangeCrosshairVisible(boolean) - Method in class org.jfree.chart.plot.XYPlot: Sets the flag indicating whether or not the range crosshair is visible.
setRangeDescription(String) - Method in class org.jfree.data.time.TimePeriodValues: Sets the range description.
setRangeDescription(String) - Method in class org.jfree.data.time.TimeSeries: Sets the range description and fires a property change event for the 'Range' property.
setRangeGridlinePaint(Paint) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the paint used to draw the grid lines against the range axis.
setRangeGridlinePaint(Paint) - Method in class org.jfree.chart.plot.FastScatterPlot: Sets the paint for the grid lines plotted against the range axis.
setRangeGridlinePaint(Paint) - Method in class org.jfree.chart.plot.XYPlot: Sets the paint for the grid lines plotted against the range axis.
setRangeGridlineStroke(Stroke) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the stroke used to draw the grid-lines against the range axis.
setRangeGridlineStroke(Stroke) - Method in class org.jfree.chart.plot.FastScatterPlot: Sets the stroke for the grid lines plotted against the range axis.
setRangeGridlineStroke(Stroke) - Method in class org.jfree.chart.plot.XYPlot: Sets the stroke for the grid lines plotted against the range axis.
setRangeGridlinesVisible(boolean) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the flag that controls whether or not grid-lines are drawn against the range axis.
setRangeGridlinesVisible(boolean) - Method in class org.jfree.chart.plot.FastScatterPlot: Sets the flag that controls whether or not the range axis grid lines are visible.
setRangeGridlinesVisible(boolean) - Method in class org.jfree.chart.plot.XYPlot: Sets the flag that controls whether or not the range axis grid lines are visible.
setRangeTickBandPaint(Paint) - Method in class org.jfree.chart.plot.XYPlot: Sets the paint for the range tick bands.
setRangeWithMargins(double, double) - Method in class org.jfree.chart.axis.ValueAxis: Sets the axis range (after first adding the current margins to the range) and sends an AxisChangeEvent to all registered listeners.
setRangeWithMargins(Range) - Method in class org.jfree.chart.axis.ValueAxis: Sets the range for the axis (after first adding the current margins to the specified range) and sends an AxisChangeEvent to all registered listeners.
setRangeWithMargins(Range, boolean, boolean) - Method in class org.jfree.chart.axis.ValueAxis: Sets the range for the axis after first adding the current margins to the range and, if requested, sends an AxisChangeEvent to all registered listeners.
setRank(double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.DoubleAndSourceList
setReactionCompartment(Node, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper: Sets the compartment of a node
setReactionConstant(Edge, Boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper: Sets a value for the attribute constant
setReactionFast(Node, Boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper: Sets the attribute fast of a node
setReactionID(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.ReactionIDSpeciesIDWrapper
setReactionID(Node, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper: Sets the attribute id of a node
setReactionLabel(Node, String, String, PositionGridGenerator) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper: Sets the attribute name of a node
setReactionName(Node, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper
setReactionReversible(Node, Boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper: Sets the attribute reversible of a node
setReactionSpecies(Edge, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper: Sets the species of a reaction
setReactionSpeciesID(Edge, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper: The id of the species of an reaction
setReactionSpeciesName(Edge, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper: The name of the species of a reaction
setRed(int) - Method in class org.graffiti.graphics.ColorAttribute: Sets the 'red'-value.
setRedraw(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BringToFrontOrBackAlgorithm
setRef(Entry) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.IdRef
setReference(Entry) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.KeggId
setReference(Pathway) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.KeggId
setReference(Reaction) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.KeggId
setReference(String) - Method in class org.graffiti.graphics.ImageAttribute: Sets the 'reference'-value.
setReferenceURL(Attributable, String) - Static method in class org.AttributeHelper
setRefreshBuffer(boolean) - Method in class org.jfree.chart.ChartPanel: Sets the refresh buffer flag.
setRelAlign(double) - Method in class org.graffiti.graphics.EdgeLabelPositionAttribute: Sets the relAlign.
setRelationSourceTargetInformation(Edge, int, String, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setRelationSrcTgtInformation(Edge, int, IdRef, IdRef) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper: Add information about source or target entity which requests a relation and thus the creation of an edge
setRelationSubtypeName(Edge, int, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setRelationTypeInformation(Edge, int, RelationType) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.KeggGmlHelper
setRelHor(double) - Method in class org.graffiti.graphics.NodeLabelPositionAttribute: Sets the relHor.
setRelVert(double) - Method in class org.graffiti.graphics.NodeLabelPositionAttribute: Sets the relVert.
setRemark(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader
setRemark(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface
setRenderAsPoints(boolean) - Method in class org.jfree.chart.plot.ContourPlot: Sets the renderAsPoints.
setRenderer(int, CategoryItemRenderer) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the renderer at the specified index and sends a PlotChangeEvent to all registered listeners.
setRenderer(int, CategoryItemRenderer, boolean) - Method in class org.jfree.chart.plot.CategoryPlot: Sets a renderer.
setRenderer(int, XYItemRenderer) - Method in class org.jfree.chart.plot.XYPlot: Sets a renderer and sends a PlotChangeEvent is sent to all registered listeners.
setRenderer(ListCellRenderer<Object>) - Method in class org.graffiti.plugin.parameter.ObjectListParameter
setRenderer(CategoryItemRenderer) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the renderer at index 0 (sometimes referred to as the "primary" renderer) and sends a PlotChangeEvent to all registered listeners.
setRenderer(CategoryItemRenderer, boolean) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the renderer at index 0 (sometimes referred to as the "primary" renderer) and, if requested, sends a PlotChangeEvent to all registered listeners.
setRenderer(PolarItemRenderer) - Method in class org.jfree.chart.plot.PolarPlot: Sets the item renderer, and notifies all listeners of a change to the plot.
setRenderer(WaferMapRenderer) - Method in class org.jfree.chart.plot.WaferMapPlot: Sets the item renderer, and notifies all listeners of a change to the plot.
setRenderer(XYItemRenderer) - Method in class org.jfree.chart.plot.CombinedDomainXYPlot: Sets the item renderer FOR ALL SUBPLOTS.
setRenderer(XYItemRenderer) - Method in class org.jfree.chart.plot.CombinedRangeXYPlot: Sets the item renderer FOR ALL SUBPLOTS.
setRenderer(XYItemRenderer) - Method in class org.jfree.chart.plot.XYPlot: Sets the renderer for the primary dataset and sends a PlotChangeEvent to all registered listeners.
setRenderingHints(RenderingHints) - Method in class org.jfree.chart.JFreeChart: Sets the rendering hints for the chart.
setRenderingOrder(LegendRenderingOrder) - Method in class org.jfree.chart.StandardLegend: Sets the legend rendering order and sends a LegendChangeEvent to all registered listeners.
setReplicateId(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverage
setReplicateId(int) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverageInterface
setReplicateID(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurement
setReplicateID(int) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurementInterface
setReplicateID(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DataRowExcelExport
setReplicateIDs(LinkedHashSet<Integer>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation
setReplicateNumber(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ReplicateDouble
setRequestFocus(boolean) - Method in class org.MarkComponent
setReshowDelay(int) - Method in class org.jfree.chart.ChartPanel: Specifies the amount of time before the user has to wait initialDelay milliseconds before a tooltip will be shown.
setRethrowErrorMessages(boolean) - Static method in class org.ErrorMsg
setReversible(Node, Boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setRevolutionDistance(double) - Method in class org.jfree.chart.plot.CompassPlot: Sets the count to complete one revolution.
setRight(double) - Method in class org.jfree.chart.axis.AxisSpace: Sets the right space.
setRightArrow(Shape) - Method in class org.jfree.chart.axis.ValueAxis: Sets the shape that can be displayed as an arrow pointing rightwards at the end of an axis line and sends an AxisChangeEvent to all registered listeners.
setRightCategoryLabelPosition(CategoryLabelPosition) - Method in class org.jfree.chart.axis.CategoryAxis: Deprecated.
Use setLabelPositions(...).
setRotateX(double) - Method in class org.jfree.chart.needle.MeterNeedle: Sets the rotateX value.
setRotateY(double) - Method in class org.jfree.chart.needle.MeterNeedle: Sets the rotateY value.
setRotationAnchor(TextAnchor) - Method in class org.jfree.chart.annotations.TextAnnotation: Sets the rotation anchor point.
setRotationAngle(double) - Method in class org.jfree.chart.annotations.TextAnnotation: Sets the rotation angle.
setRoundedEdges(double) - Method in class org.graffiti.graphics.GraphElementGraphicAttribute
setRoundedEdges(Node, double) - Static method in class org.AttributeHelper
setRounding(double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
setRow(double[]) - Method in class info.clearthought.layout.TableLayout: Adjusts the number and sizes of rows in this layout.
setRow(int, double) - Method in class info.clearthought.layout.TableLayout: Adjusts the height of a single row in this layout.
setRowBackground0(Color) - Method in class org.FolderPanel
setRowBackground1(Color) - Method in class org.FolderPanel
setRowColSpacing(int, int) - Method in class org.FolderPanel
setRowId(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
setRowId(int) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
setRowId(long) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample
setRowId(long) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface
setRowId(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
setRowId(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
setRowRenderingOrder(SortOrder) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the order in which the rows should be rendered.
setRSSfeedName(String) - Method in class org.graffiti.managers.pluginmgr.PluginDescription
setRSSfeedURL(String) - Method in class org.graffiti.managers.pluginmgr.PluginDescription
setRunningAsApplet(JApplet) - Static method in class org.ReleaseInfo: Deprecated.
since 2.6.5, because JApplet is going to be dropped altogether in future (9+) Java versions
setRunningReleaseStatus(Release) - Static method in class org.ReleaseInfo
setSampcomp(LinkedHashSet<String>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation
setSampleAverage(SampleAverageInterface) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample
setSampleAverage(SampleAverageInterface) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface
setSampleTtestInfo(TtestInfo) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample
setSampleTtestInfo(TtestInfo) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface
setSampmeas(LinkedHashSet<String>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation
setSamptimepoint(LinkedHashSet<String>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation
setSamptimeunit(LinkedHashSet<String>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation
setSaveScripts(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithm
setSBMLid(GraphElement, String) - Static method in class org.AttributeHelper
setSBMLmodelID(GraphElement, String) - Static method in class org.AttributeHelper
setSBMLreversibleReaction(GraphElement, String) - Static method in class org.AttributeHelper
setSBMLrole(GraphElement, String) - Static method in class org.AttributeHelper
setSBOTerm(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLAlgebraicRule
setSBOTerm(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLAssignmentRule
setSBOTerm(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartment
setSBOTerm(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLConstraint
setSBOTerm(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventAssignmentHelper
setSBOTerm(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
setSBOTerm(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLFunctionDefinition
setSBOTerm(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLInitialAssignment
setSBOTerm(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLParameter
setSBOTerm(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLRateRule
setSBOTerm(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLUnit
setSBOTerm(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLUnitDefinition
setSBOTerm(Node, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.KineticLawHelper
setSBOTerm(Node, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter
setSBOTerm(Node, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setSBOTerm(Node, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper: Sets the attribute sboTerm of a species node
setSBOTermModifier(Edge, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setSBOTermProduct(Edge, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setSBOTermReactant(Edge, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setScaleDPIprintDPI(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams
setScaleDPIprintSize(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams
setScaleDPIprintSizeUnit(SizeSettingDPIunit) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams
setScaleFactor(double) - Method in class org.jfree.data.NormalizedMatrixSeries: Sets the factor that multiplies each item in this series when observed using getItem mehtod.
setScaleFactor(float) - Method in class org.vanted.scaling.scalers.BasicScaler: Set new scaling factor.
setScaleFixedUseWidth(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams
setScaleFixedUseWidthOrHeightValue(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams
setScaleSetting(SizeSetting) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams
setScaleZoomSetting(SizeSettingZoom) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams
setScore(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
setScore(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
setSearchAttributeBoolean(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption
setSearchAttributeDouble(double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption
setSearchAttributeInteger(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption
setSearchAttributeName(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption
setSearchAttributePath(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption
setSearchAttributeString(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption
setSearchLogic(SearchLogic) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption
setSearchNodeOrEdge(NodeOrEdge) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption
setSearchOperation(SearchOperation) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption
setSearchType(SearchType) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOption
setSectionIndex(int) - Method in class org.jfree.chart.entity.PieSectionEntity: Sets the section index.
setSectionKey(Comparable) - Method in class org.jfree.chart.entity.PieSectionEntity: Sets the section key.
setSectionOutlinePaint(int, Paint) - Method in class org.jfree.chart.plot.PiePlot: Sets the paint used to fill a section of the pie and sends a PlotChangeEvent to all registered listeners.
setSectionOutlinePaint(Paint) - Method in class org.jfree.chart.plot.PiePlot: Sets the outline paint for ALL sections in the plot.
setSectionOutlineStroke(int, Stroke) - Method in class org.jfree.chart.plot.PiePlot: Sets the stroke used to fill a section of the pie and sends a PlotChangeEvent to all registered listeners.
setSectionOutlineStroke(Stroke) - Method in class org.jfree.chart.plot.PiePlot: Sets the outline stroke for ALL sections in the plot.
setSectionPaint(int, Paint) - Method in class org.jfree.chart.plot.PiePlot: Sets the paint used to fill a section of the pie and sends a PlotChangeEvent to all registered listeners.
setSectionPaint(Paint) - Method in class org.jfree.chart.plot.PiePlot: Sets the paint for ALL sections in the plot.
setSecure(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
setSecure(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
setSelected(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment.PositionButton
setSelected(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.TristateCheckBox
setSelected(ButtonModel, boolean) - Method in class org.graffiti.editor.GraffitiButtonGroup: Sets the selected value for the ButtonModel.
setSelectedTab(InspectorTab) - Method in interface org.graffiti.plugin.inspector.InspectorPlugin
setSelectedTab(InspectorTab) - Method in class org.graffiti.plugins.inspectors.defaults.Inspector
setSelection(Selection) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.AllPathsSelectionAlgorithm: Sets the selection on which the algorithm works.
setSelection(Selection) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.WeightedShortestPathSelectionAlgorithm
setSelection(Selection) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.graph_cleanup.DeleteNodesAlgorithm: Sets the selection on which the algorithm works.
setSelection(Selection) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.HierarchyAlgorithm: Sets the selection on which the algorithm works.
setSelection(Selection) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.SelectLeafNodesAlgorithm: Sets the selection on which the algorithm works.
setSelection(Selection) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.ExpandSelectionAlgorithm: Sets the selection on which the algorithm works.
setSelection(Selection) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.FindReplaceDialog: Sets the selection on which the algorithm works.
setSelection(Selection) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.InvertSelectionAlgorithm: Sets the selection on which the algorithm works.
setSelection(Selection) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.RemoveSelectedNodesPreserveEdgesAlgorithm: Sets the selection on which the algorithm works.
setSelection(Selection) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchAndSelecAlgorithm: Sets the selection on which the algorithm works.
setSelection(Selection) - Method in class org.graffiti.plugin.algorithm.ThreadSafeOptions: Set selection for graph.
setSelection(Selection) - Method in class org.graffiti.plugin.parameter.SelectionParameter: Sets the selection.
setSelectionModel(SelectionModel) - Method in class org.graffiti.session.EditorSession: Sets the selectionModel.
setSelectionPaths(TreePath[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.CheckTreeSelectionModel
setSequence(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
setSequence(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
setSequence(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader
setSequence(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface
setSeries(int) - Method in class org.jfree.chart.entity.CategoryItemEntity: Sets the series index.
setSeries(int) - Method in class org.jfree.chart.entity.XYItemEntity: Deprecated.
Renamed setSeriesIndex().
setSeriesAngle(int, Number) - Method in class org.jfree.chart.renderer.AbstractRenderer: Deprecated.
Use setSeriesPositiveItemLabelPosition()/setSeriesNegativeItemLabelPosition().
setSeriesBarWidth(int, double) - Method in class org.jfree.chart.renderer.LayeredBarRenderer: Sets the width of the bars of a series.
setSeriesColor(int, Color) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttribute
setSeriesColor(String, Color) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttribute
setSeriesColorsAndStroke(CategoryItemRenderer, float, Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.XmlDataChartComponent
setSeriesFilled(int, boolean) - Method in class org.jfree.chart.renderer.DefaultPolarItemRenderer: Sets a flag that controls whether or not a series is filled.
setSeriesIndex(int) - Method in class org.jfree.chart.entity.LegendItemEntity: Sets the series index.
setSeriesIndex(int) - Method in class org.jfree.chart.entity.XYItemEntity: Sets the series index.
setSeriesItemLabelAnchor(int, ItemLabelAnchor) - Method in class org.jfree.chart.renderer.AbstractRenderer: Deprecated.
Use setSeriesPositiveItemLabelPosition()/setSeriesNegativeItemLabelPosition().
setSeriesItemLabelAnchor(int, ItemLabelAnchor) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Deprecated.
Use setSeriesPositiveItemLabelPosition() or setSeriesNegativeItemLabelPosition().
setSeriesItemLabelFont(int, Font) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the item label font for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesItemLabelFont(int, Font) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the item label font for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesItemLabelFont(int, Font) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the item label font for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesItemLabelFont(int, Font, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the item label font for a series and, if requested, sends a RendererChangeEvent to all registered listeners.
setSeriesItemLabelPaint(int, Paint) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the item label paint for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesItemLabelPaint(int, Paint) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the item label paint for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesItemLabelPaint(int, Paint) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the item label paint for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesItemLabelPaint(int, Paint, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the item label paint for a series and, if requested, sends a RendererChangeEvent to all registered listeners.
setSeriesItemLabelRotationAnchor(int, TextAnchor) - Method in class org.jfree.chart.renderer.AbstractRenderer: Deprecated.
Use setSeriesPositiveItemLabelPosition()/setSeriesNegativeItemLabelPosition().
setSeriesItemLabelsVisible(int, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets a flag that controls the visibility of the item labels for a series.
setSeriesItemLabelsVisible(int, boolean) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets a flag that controls the visibility of the item labels for a series.
setSeriesItemLabelsVisible(int, boolean) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets a flag that controls the visibility of the item labels for a series.
setSeriesItemLabelsVisible(int, Boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the visibility of the item labels for a series.
setSeriesItemLabelsVisible(int, Boolean) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets a flag that controls the visibility of the item labels for a series.
setSeriesItemLabelsVisible(int, Boolean) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets a flag that controls the visibility of the item labels for a series.
setSeriesItemLabelsVisible(int, Boolean, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the visibility of item labels for a series and, if requested, sends a RendererChangeEvent to all registered listeners.
setSeriesItemLabelsVisible(int, Boolean, boolean) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the visibility of item labels for a series and, if requested, sends a RendererChangeEvent to all registered listeners.
setSeriesItemLabelsVisible(int, Boolean, boolean) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the visibility of item labels for a series and, if requested, sends a RendererChangeEvent to all registered listeners.
setSeriesItemLabelTextAnchor(int, TextAnchor) - Method in class org.jfree.chart.renderer.AbstractRenderer: Deprecated.
Use setSeriesPositiveItemLabelPosition()/setSeriesNegativeItemLabelPosition().
setSeriesItemLabelTextAnchor(int, TextAnchor) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Deprecated.
Use setSeriesPositiveItemLabelPosition() or setSeriesNegativeItemLabelPosition().
setSeriesItemURLGenerator(int, CategoryURLGenerator) - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer: Sets the URL generator for a series.
setSeriesItemURLGenerator(int, CategoryURLGenerator) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the item URL generator for a series.
setSeriesKeys(Comparable[]) - Method in class org.jfree.data.DefaultIntervalCategoryDataset: Sets the names of the series in the dataset.
setSeriesLabelGenerator(int, CategoryLabelGenerator) - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer: Sets the label generator for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesLabelGenerator(int, CategoryLabelGenerator) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the item label generator for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesLabelGenerator(int, XYLabelGenerator) - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer: Sets the label generator for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesLabelGenerator(int, XYLabelGenerator) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the label generator for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesLinesVisible(int, boolean) - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer: Sets the 'lines visible' flag for a series.
setSeriesLinesVisible(int, Boolean) - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer: Sets the 'lines visible' flag for a series.
setSeriesName(int, String) - Method in class org.jfree.data.time.DynamicTimeSeriesCollection: Sets the name of a series.
setSeriesName(String) - Method in class org.jfree.data.xml.CategorySeriesHandler: Sets the series name.
setSeriesNames(String[]) - Method in class org.jfree.data.DefaultContourDataset: Sets the names of the series in the data source.
setSeriesNeedle(int) - Method in class org.jfree.chart.plot.CompassPlot: Sets the needle type.
setSeriesNeedle(int, int) - Method in class org.jfree.chart.plot.CompassPlot: Sets the needle for a series.
setSeriesNeedle(int, MeterNeedle) - Method in class org.jfree.chart.plot.CompassPlot: Sets the needle for a series.
setSeriesNegativeItemLabelPosition(int, ItemLabelPosition) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the item label position for negative values in a series and sends a RendererChangeEvent to all registered listeners.
setSeriesNegativeItemLabelPosition(int, ItemLabelPosition) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the item label position for negative values in a series and sends a RendererChangeEvent to all registered listeners.
setSeriesNegativeItemLabelPosition(int, ItemLabelPosition) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the item label position for negative values in a series and sends a RendererChangeEvent to all registered listeners.
setSeriesNegativeItemLabelPosition(int, ItemLabelPosition, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the item label position for negative values in a series and (if requested) sends a.
setSeriesNegativeItemLabelPosition(int, ItemLabelPosition, boolean) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the item label position for negative values in a series and (if requested) sends a.
setSeriesNegativeItemLabelPosition(int, ItemLabelPosition, boolean) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the item label position for negative values in a series and (if requested) sends a.
setSeriesOutlineColor(int, Color) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttribute
setSeriesOutlinePaint(int, Paint) - Method in class org.jfree.chart.plot.CompassPlot: Sets the series outline paint.
setSeriesOutlinePaint(int, Paint) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the paint used for a series outline and sends a RendererChangeEvent to all registered listeners.
setSeriesOutlinePaint(int, Paint) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the paint used for a series outline and sends a RendererChangeEvent to all registered listeners.
setSeriesOutlinePaint(int, Paint) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the paint used for a series outline and sends a RendererChangeEvent to all registered listeners.
setSeriesOutlinePaint(int, Paint, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the paint used to draw the outline for a series and, if requested, sends a RendererChangeEvent to all registered listeners.
setSeriesOutlineStroke(int, Stroke) - Method in class org.jfree.chart.plot.CompassPlot: Sets the series outline stroke.
setSeriesOutlineStroke(int, Stroke) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the outline stroke used for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesOutlineStroke(int, Stroke) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the outline stroke used for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesOutlineStroke(int, Stroke) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the outline stroke used for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesOutlineStroke(int, Stroke, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the outline stroke for a series and, if requested, sends a RendererChangeEvent to all registered listeners.
setSeriesPaint(int, Paint) - Method in class org.jfree.chart.plot.CompassPlot: Sets the series paint.
setSeriesPaint(int, Paint) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the paint used for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesPaint(int, Paint) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the paint used for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesPaint(int, Paint) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the paint used for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesPaint(int, Paint, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the paint used for a series and, if requested, sends a RendererChangeEvent to all registered listeners.
setSeriesPositiveItemLabelPosition(int, ItemLabelPosition) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the item label position for all positive values in a series and sends a RendererChangeEvent to all registered listeners.
setSeriesPositiveItemLabelPosition(int, ItemLabelPosition) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the item label position for all positive values in a series and sends a RendererChangeEvent to all registered listeners.
setSeriesPositiveItemLabelPosition(int, ItemLabelPosition) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the item label position for all positive values in a series and sends a RendererChangeEvent to all registered listeners.
setSeriesPositiveItemLabelPosition(int, ItemLabelPosition, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the item label position for all positive values in a series and (if requested) sends a RendererChangeEvent to all registered listeners.
setSeriesPositiveItemLabelPosition(int, ItemLabelPosition, boolean) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the item label position for all positive values in a series and (if requested) sends a RendererChangeEvent to all registered listeners.
setSeriesPositiveItemLabelPosition(int, ItemLabelPosition, boolean) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the item label position for all positive values in a series and (if requested) sends a RendererChangeEvent to all registered listeners.
setSeriesShape(int, Shape) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the shape used for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesShape(int, Shape) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the shape used for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesShape(int, Shape) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the shape used for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesShape(int, Shape, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the shape for a series and, if requested, sends a RendererChangeEvent to all registered listeners.
setSeriesShapesFilled(int, boolean) - Method in class org.jfree.chart.renderer.LineAndShapeRenderer: Sets the 'shapes filled' flag for a series.
setSeriesShapesFilled(int, boolean) - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer: Sets the 'shapes filled' flag for a series.
setSeriesShapesFilled(int, Boolean) - Method in class org.jfree.chart.renderer.LineAndShapeRenderer: Sets the 'shapes filled' flag for a series.
setSeriesShapesFilled(int, Boolean) - Method in class org.jfree.chart.renderer.StandardXYItemRenderer: Sets the 'shapes filled' flag for a series.
setSeriesShapesFilled(int, Boolean) - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer: Sets the 'shapes filled' flag for a series.
setSeriesShapesVisible(int, boolean) - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer: Sets the 'shapes visible' flag for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesShapesVisible(int, Boolean) - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer: Sets the 'shapes visible' flag for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesStroke(int, Stroke) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the stroke used for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesStroke(int, Stroke) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the stroke used for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesStroke(int, Stroke) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the stroke used for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesStroke(int, Stroke, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the stroke for a series and, if requested, sends a RendererChangeEvent to all registered listeners.
setSeriesToGroupMap(KeyToGroupMap) - Method in class org.jfree.chart.renderer.GroupedStackedBarRenderer: Updates the map used to assign each series to a group.
setSeriesToolTipGenerator(int, CategoryToolTipGenerator) - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer: Sets the tool tip generator for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesToolTipGenerator(int, CategoryToolTipGenerator) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the tool tip generator for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesToolTipGenerator(int, XYToolTipGenerator) - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer: Sets the tool tip generator for a series and sends a RendererChangeEvent to all registered listeners.
setSeriesToolTipGenerator(int, XYToolTipGenerator) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the tool tip generator for a series and sends a RendererChangeEvent to all registered listeners.
setSession(EditorSession) - Method in class org.graffiti.editor.GraffitiFrame
setSession(EditorSession) - Method in class org.graffiti.editor.GraffitiInternalFrame
setSetAsDefault(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation
setSettings(boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.WorkflowHelper: Deprecated.
setShadowColor(Color) - Method in class org.graffiti.plugins.attributecomponents.simplelabel.ViewLabel
setShadowOffset(int, int) - Method in class org.graffiti.plugins.attributecomponents.simplelabel.ViewLabel
setShadowPaint(Paint) - Method in class org.jfree.chart.plot.PiePlot: Sets the shadow paint and sends a PlotChangeEvent to all registered listeners.
setShadowXOffset(double) - Method in class org.jfree.chart.plot.PiePlot: Sets the x-offset for the shadow effect and sends a PlotChangeEvent to all registered listeners.
setShadowYOffset(double) - Method in class org.jfree.chart.plot.PiePlot: Sets the y-offset for the shadow effect and sends a PlotChangeEvent to all registered listeners.
setShape(Shape) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the shape for ALL series (optional) and sends a RendererChangeEvent to all registered listeners.
setShape(Shape) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the shape for ALL series (optional) and sends a RendererChangeEvent to all registered listeners.
setShape(Shape) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the shape for ALL series (optional) and sends a RendererChangeEvent to all registered listeners.
setShape(Shape, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the shape for ALL series and, if requested, sends a RendererChangeEvent to all registered listeners.
setShape(String) - Method in class org.graffiti.graphics.GraphElementGraphicAttribute: Sets the 'shape'-value.
setShape(Edge, String) - Static method in class org.AttributeHelper
setShape(Node, String) - Static method in class org.AttributeHelper
setShapeEllipse(Node) - Static method in class org.AttributeHelper
setShapeHeight(double) - Method in class org.jfree.chart.renderer.SignalRenderer: Sets the shape height.
setShapeOutlinePaint(Paint) - Method in class org.jfree.chart.StandardLegend: Sets the paint used to outline shapes.
setShapeOutlineStroke(Stroke) - Method in class org.jfree.chart.StandardLegend: Sets the stroke used to outline shapes and sends a LegendChangeEvent to all registered listeners.
setShapePaint(Paint) - Method in class org.jfree.chart.renderer.StackedXYAreaRenderer: Sets the Paint for rendering shapes.
setShapeRectangle(Node) - Static method in class org.AttributeHelper
setShapeScaleX(double) - Method in class org.jfree.chart.StandardLegend: Sets the x scale factor for shapes displayed in the legend and sends a LegendChangeEvent to all registered listeners.
setShapeScaleY(double) - Method in class org.jfree.chart.StandardLegend: Sets the y scale factor for shapes displayed in the legend and sends a LegendChangeEvent to all registered listeners.
setShapesFilled(boolean) - Method in class org.jfree.chart.renderer.LineAndShapeRenderer: Sets the 'shapes filled' for ALL series.
setShapesFilled(boolean) - Method in class org.jfree.chart.renderer.StandardXYItemRenderer: Sets the 'shapes filled' for ALL series.
setShapesFilled(boolean) - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer: Sets the 'shapes filled' for ALL series and sends a RendererChangeEvent to all registered listeners.
setShapesFilled(boolean) - Method in class org.jfree.chart.renderer.XYStepAreaRenderer: Sets the 'shapes filled' for ALL series.
setShapesFilled(Boolean) - Method in class org.jfree.chart.renderer.LineAndShapeRenderer: Sets the 'shapes filled' for ALL series.
setShapesFilled(Boolean) - Method in class org.jfree.chart.renderer.StandardXYItemRenderer: Sets the 'shapes filled' for ALL series.
setShapesFilled(Boolean) - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer: Sets the 'shapes filled' for ALL series and sends a RendererChangeEvent to all registered listeners.
setShapeStroke(Stroke) - Method in class org.jfree.chart.renderer.StackedXYAreaRenderer: Sets the Stroke for rendering shapes.
setShapesVisible(boolean) - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer: Sets the 'shapes visible' for ALL series and sends a RendererChangeEvent to all registered listeners.
setShapesVisible(Boolean) - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer: Sets the 'shapes visible' for ALL series and sends a RendererChangeEvent to all registered listeners.
setShapeWidth(double) - Method in class org.jfree.chart.renderer.SignalRenderer: Sets the shape width.
setShift(Point) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundImageAttributeComponent
setShift(Point) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.pathway_references.PathwayLinkVisualizationComponent
setShift(Point) - Method in class org.graffiti.plugin.attributecomponent.AbstractAttributeComponent: DOCUMENT ME!
setShift(Point) - Method in class org.graffiti.plugin.view.AttributeComponent: DOCUMENT ME!
setShort(short) - Method in class org.graffiti.attributes.ShortAttribute: Set the value of this Object.
setShort(String, short) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
setShort(String, short) - Method in class org.graffiti.attributes.AbstractAttributable: Sets the Attribute at the given path to the given value.
setShort(String, short) - Method in interface org.graffiti.attributes.Attributable: Sets the Attribute at the given path to the given value.
setShow(boolean) - Method in class org.graffiti.plugins.attributecomponents.simplelabel.ViewLabel
setShowAxisLocation(int) - Method in class org.jfree.chart.plot.JThermometer: Sets the location for the axis.
setShowCondenseButton(boolean) - Method in class org.FolderPanel
setShowEmpty(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.LineModeAttributeEditor
setShowEmpty(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment.LabelAlignmentAttributeEditor
setShowEmpty(boolean) - Method in class org.graffiti.plugin.editcomponent.AbstractValueEditComponent
setShowEmpty(boolean) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
setShowEmpty(boolean) - Method in class org.graffiti.plugin.editcomponent.NumberEditComponent
setShowEmpty(boolean) - Method in class org.graffiti.plugin.editcomponent.SpinnerEditComponent
setShowEmpty(boolean) - Method in interface org.graffiti.plugin.editcomponent.ValueEditComponent: Called with a value of true when this component should display nothing instead of the value of its associated displayable.
setShowGraphExtensions(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.metacrop.PathwayWebLinkTab
setShowValueLines(boolean) - Method in class org.jfree.chart.plot.JThermometer: Sets the flag that controls whether or not value lines are displayed.
setShowValueLines(boolean) - Method in class org.jfree.chart.plot.ThermometerPlot: Sets the display as to whether to show value lines in the output.
setSidePanel(int) - Method in class org.graffiti.editor.MainFrame
setSidePanel(JToolBar, int) - Method in class org.graffiti.editor.MainFrame
setSize(double, double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
setSize(int) - Method in class org.jfree.chart.needle.MeterNeedle: Sets the size.
setSize(Double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartment
setSize(Node, double, double) - Static method in class org.AttributeHelper: Sets the size of the Node.
setSize(Node, int, int) - Static method in class org.AttributeHelper: Sets the size of the Node.
setSize(Node, Vector2d) - Static method in class org.AttributeHelper: Sets the size of the Node.
setSizekb(long) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader
setSizekb(long) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface
setSkalar(ClassesAll) - Method in class qmwi.kseg.som.diagram.ClassesObject: Insert the method's description here.
setSkipCategoryLabelsToFit(boolean) - Method in class org.jfree.chart.axis.CategoryAxis: Deprecated.
No longer supported.
setSkipLabels(int) - Method in class org.jfree.chart.axis.CategoryAxis
setSkipLabels(int) - Method in class org.jfree.chart.plot.CategoryPlot
setSliderValue(int) - Static method in class org.vanted.scaling.ScalingSlider: Set the slider value.
setSnd(Point2D) - Method in class org.graffiti.plugins.attributecomponents.simplelabel.PointPair: DOCUMENT ME!
setSource(String) - Method in class org.graffiti.graphics.DockingAttribute: Sets the 'source'-value.
setSource(Node) - Method in class org.graffiti.graph.AbstractEdge: Sets the source of the current Edge to source.
setSource(Node) - Method in interface org.graffiti.graph.Edge: Sets the source of the current Edge to source.
setSourceComponent(NodeComponentInterface) - Method in interface org.graffiti.plugin.view.EdgeComponentInterface: Sets the source component.
setSourceComponent(NodeComponentInterface) - Method in class org.graffiti.plugins.views.defaults.EdgeComponent: Sets the source component.
setSourceEntry(Entry) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation
setSourceInformation(String, String, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.NodeCombination
setSourcePathwayKeggId(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Entry
setSpacer(Spacer) - Method in class org.jfree.chart.title.Title: Sets the spacer for the title and sends a TitleChangeEvent to all registered listeners.
setSpatialDimensions(Double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartment
setSpecies(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
setSpecies(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
setSpecies(Edge, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setSpeciesAttributes(Node, String, Object) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper
setSpeciesGenotypeAndTreatment(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow
setSpeciesID(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.ReactionIDSpeciesIDWrapper
setSpot(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
setSpot(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
setStagger(boolean) - Method in class org.jfree.chart.renderer.CategoryStepRenderer: Sets the flag that controls whether or not the series steps are staggered.
setStandardTickUnits(TickUnitSource) - Method in class org.jfree.chart.axis.ValueAxis: Sets the source for obtaining standard tick units for the axis and sends an AxisChangeEvent to all registered listeners.
setStartAngle(double) - Method in class org.jfree.chart.plot.PiePlot: Sets the starting angle and sends a PlotChangeEvent to all registered listeners.
setStartdate(Date) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeader
setStartdate(Date) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentHeaderInterface
setStartPercent(double) - Method in class org.jfree.chart.renderer.GanttRenderer: Sets the position of the start of the progress indicator, as a percentage of the bar width.
setStartTime(double) - Method in class org.vanted.animation.Animation: Sets the time at which the Animation object will begin its animation
setStartTime(long) - Method in class org.jfree.chart.axis.SegmentedTimeline: Sets the start time for the timeline.
setStartTime(long, TimeUnit) - Method in class org.vanted.animation.Animation: Sets the time at which the Animation object will begin its animation.
setStartValue(int, Object, Number) - Method in class org.jfree.data.DefaultIntervalCategoryDataset: Sets the start data value for one category in a series.
setState(TristateCheckBox.State) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.gui.TristateCheckBox: Set the new state to either SELECTED, NOT_SELECTED or DONT_CARE.
setStatus(int, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe.ProgressManager
setStatusMessage(String) - Static method in class org.ErrorMsg
setStatusProvider(BackgroundTaskStatusProvider, String, String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskGUIprovider
setStatusProvider(BackgroundTaskStatusProvider, String, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskPanelEntry
setStatusProvider(BackgroundTaskStatusProvider, String, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskWindow
setStatusProvider(BackgroundTaskStatusProviderSupportingExternalCall) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKGraffitiView
setStatusProvider(BackgroundTaskStatusProviderSupportingExternalCall) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.PaintStatusSupport
setStddev(double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverage
setStddev(double) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverageInterface
setStddev(double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyComparableDataPoint
setStdDevLineWidth(float) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyLineAndShapeRenderer
setStdDevTopWidth(double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.MyLineAndShapeRenderer
setStepped(boolean) - Method in class org.jfree.chart.ui.ColorPalette: Sets the stepped flag.
setStoichiometry(Edge, Double) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLHelper: Sets a value for the attribute stoichiometry
setStoichiometry(Edge, Double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLReactionHelper
setStrictValuesFlag(boolean) - Method in class org.jfree.chart.axis.LogarithmicAxis: Sets the 'strictValuesFlag' flag; if true and 'allowNegativesFlag' is false then this axis will throw a runtime exception if any of its values are less than or equal to zero; if false then the axis will adjust for values less than or equal to zero as needed.
setString(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttribute
setString(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttribute
setString(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundAttribute
setString(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundPositionAttribute
setString(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttribute
setString(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggGroupPartAttribute
setString(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggIdAttribute
setString(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionIdAttribute
setString(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionTypeAttribute
setString(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSrcTgtAttribute
setString(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSubTypeAttribute
setString(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationTypeAttribute
setString(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggTypeAttribute
setString(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttribute
setString(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttribute
setString(String) - Method in class org.graffiti.attributes.ObjectAttribute
setString(String) - Method in class org.graffiti.attributes.StringAttribute: Sets the value of this object.
setString(String, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
setString(String, String) - Method in class org.graffiti.attributes.AbstractAttributable: Sets the Attribute at the given path to the given value.
setString(String, String) - Method in interface org.graffiti.attributes.Attributable: Sets the Attribute at the given path to the given value.
setStringRec(SSTRecord) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData
setStroke(Stroke) - Method in class org.jfree.chart.plot.Marker: Sets the stroke.
setStroke(Stroke) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the stroke for ALL series and sends a RendererChangeEvent to all registered listeners.
setStroke(Stroke) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the stroke for ALL series and sends a RendererChangeEvent to all registered listeners.
setStroke(Stroke) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the stroke for ALL series and sends a RendererChangeEvent to all registered listeners.
setStroke(Stroke, boolean) - Method in class org.jfree.chart.renderer.AbstractRenderer: Sets the stroke for ALL series and, if requested, sends a RendererChangeEvent to all registered listeners.
setStrokeWidth(double) - Method in class org.graffiti.plugins.attributecomponents.simplelabel.ViewLabel
setSubLabelFont(Font) - Method in class org.jfree.chart.axis.ExtendedCategoryAxis: Sets the font for the sublabels.
setSubLabelFont(Font) - Method in class org.jfree.chart.axis.SubCategoryAxis: Sets the font used to display the sub-category labels and sends an AxisChangeEvent to all registered listeners.
setSubLabelPaint(Paint) - Method in class org.jfree.chart.axis.ExtendedCategoryAxis: Sets the paint for the sublabels.
setSubLabelPaint(Paint) - Method in class org.jfree.chart.axis.SubCategoryAxis: Sets the paint used to display the sub-category labels and sends an AxisChangeEvent to all registered listeners.
setSubrange(int, double, double) - Method in class org.jfree.chart.plot.ThermometerPlot: Sets the range.
setSubrangeInfo(int, double, double) - Method in class org.jfree.chart.plot.JThermometer: Sets the range.
setSubrangeInfo(int, double, double) - Method in class org.jfree.chart.plot.ThermometerPlot: Sets information for a particular range.
setSubrangeInfo(int, double, double, double, double) - Method in class org.jfree.chart.plot.JThermometer: Sets the range.
setSubrangeInfo(int, double, double, double, double) - Method in class org.jfree.chart.plot.ThermometerPlot: Sets the subrangeInfo attribute of the ThermometerPlot object
setSubrangePaint(int, Paint) - Method in class org.jfree.chart.plot.ThermometerPlot: Sets the paint to be used for a range.
setSubstancegroup(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
setSubstancegroup(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
setSubstances(LinkedHashSet<String>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataAnnotation
setSubstanceUnits(Node, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper: Sets the substance units of a species node
setSubstrates(Collection<Entry>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Reaction
setSubtitles(List) - Method in class org.jfree.chart.JFreeChart: Sets the title list for the chart (completely replaces any existing titles).
setSumScale(boolean) - Method in class org.jfree.chart.plot.MultiplePiePlot
setSuppressChartChangeEvents(boolean) - Method in class org.jfree.chart.JFreeChart: Deprecated.
Use setNotify(boolean) instead.
setSupressReset(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping.DataMapping
setSymbol(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLInitialAssignment
setSymbolicGridLinesVisible(boolean) - Method in class org.jfree.chart.axis.SymbolicAxis: Sets the visibility of the symbolic grid lines and notifies registered listeners that the axis has been modified.
setSynonyme(int, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
setSynonyme(int, String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
setSynonyme(HashMap<Integer, String>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
setSynonyme(HashMap<Integer, String>) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
setT(Double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.kegg_expression.KeggExpressionDatapoint
setTarget(String) - Method in class org.graffiti.graphics.DockingAttribute: Sets the 'target'-value.
setTarget(Node) - Method in class org.graffiti.graph.AbstractEdge: Sets the target of the current Edge to target.
setTarget(Node) - Method in interface org.graffiti.graph.Edge: Sets the target of the current Edge to target.
setTargetClusterForNode(int, int) - Method in class qmwi.kseg.som.Map
setTargetComponent(NodeComponentInterface) - Method in interface org.graffiti.plugin.view.EdgeComponentInterface: Sets the source component.
setTargetComponent(NodeComponentInterface) - Method in class org.graffiti.plugins.views.defaults.EdgeComponent: Sets the source component.
setTargetEntry(Entry) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation
setTargetPosition(Vector2d) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.kegg.KeggPathwayEntry
setTaskFinished(boolean, long) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskGUIprovider: Call this in case the task is finished.
setTaskFinished(boolean, long) - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskPanelEntry: Call this in case the task is finished.
setTaskFinished(boolean, long) - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskWindow
setTemplateLoader(TemplateLoader) - Method in class de.ipk_gatersleben.ag_pbi.datahandling.Template
setText(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.ClusterSplashScreen
setText(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.DBEsplashScreen
setText(String) - Method in class org.graffiti.editor.MyJLabel
setText(String) - Method in class org.graffiti.editor.SplashScreen
setText(String) - Method in interface org.graffiti.editor.SplashScreenInterface
setText(String) - Method in interface org.graffiti.util.ProgressViewer: Sets the value of the progress text.
setText(String) - Method in class org.jfree.chart.annotations.TextAnnotation: Sets the text for the annotation.
setText(String) - Method in class org.jfree.chart.title.TextTitle: Sets the title to the specified text and sends a TitleChangeEvent to all registered listeners.
setText(String) - Method in class org.JMButton
setTextAnchor(TextAnchor) - Method in class org.jfree.chart.annotations.TextAnnotation: Sets the text anchor (the point on the text bounding rectangle that is aligned to the (x, y) coordinate of the annotation).
setTextcolor(Color) - Method in class org.graffiti.graphics.LabelAttribute
setTextcolor(String) - Method in class org.graffiti.graphics.LabelAttribute: Set the 'textcolor'-value.
setThermometerPaint(Paint) - Method in class org.jfree.chart.plot.ThermometerPlot: Sets the paint used to draw the thermometer outline.
setThermometerStroke(Stroke) - Method in class org.jfree.chart.plot.ThermometerPlot: Sets the stroke used to draw the thermometer outline.
setThickness(double) - Method in class org.graffiti.graphics.EdgeGraphicAttribute: Sets the 'thickness'-value.
setTickFontStyle(int) - Method in class org.jfree.chart.plot.JThermometer: Sets the tick font style.
setTickLabelFont(Font) - Method in class org.jfree.chart.axis.Axis: Sets the font for the tick labels and sends an AxisChangeEvent to all registered listeners.
setTickLabelFont(Font) - Method in class org.jfree.chart.plot.JThermometer: Sets the tick label font.
setTickLabelFont(Font) - Method in class org.jfree.chart.plot.MeterPlot: Sets the tick label font and sends a PlotChangeEvent to all registered listeners.
setTickLabelFormat(NumberFormat) - Method in class org.jfree.chart.plot.MeterPlot: Sets the format for the tick labels and sends a PlotChangeEvent to all registered listeners.
setTickLabelInsets(Insets) - Method in class org.jfree.chart.axis.Axis: Sets the insets for the tick labels and sends an AxisChangeEvent to all registered listeners.
setTickLabelPaint(Paint) - Method in class org.jfree.chart.axis.Axis: Sets the paint used to draw tick labels (if they are showing) and sends an AxisChangeEvent to all registered listeners.
setTickLabelsVisible(boolean) - Method in class org.jfree.chart.axis.Axis: Sets the flag that determines whether or not the tick labels are visible and sends an AxisChangeEvent to all registered listeners.
setTickLabelType(int) - Method in class org.jfree.chart.plot.MeterPlot: Sets the tick label type.
setTickMarkInsideLength(float) - Method in class org.jfree.chart.axis.Axis: Sets the inside length of the tick marks and sends an AxisChangeEvent to all registered listeners.
setTickMarkOutsideLength(float) - Method in class org.jfree.chart.axis.Axis: Sets the outside length of the tick marks and sends an AxisChangeEvent to all registered listeners.
setTickMarkPaint(Paint) - Method in class org.jfree.chart.axis.Axis: Sets the paint used to draw tick marks (if they are showing).
setTickMarkPosition(DateTickMarkPosition) - Method in class org.jfree.chart.axis.DateAxis: Sets the tick mark position (start, middle or end of the time period).
setTickMarkStroke(Stroke) - Method in class org.jfree.chart.axis.Axis: Sets the pen/brush used to draw tick marks (if they are showing) and sends an AxisChangeEvent to all registered listeners.
setTickMarksVisible(boolean) - Method in class org.jfree.chart.axis.Axis: Sets the flag that indicates whether or not the tick marks are showing and sends an AxisChangeEvent to all registered listeners.
setTicks(List) - Method in class org.jfree.chart.axis.AxisState: Sets the list of ticks.
setTickSize(double) - Method in class org.jfree.chart.renderer.HighLow: Sets the width of the open/close tick.
setTickUnit(DateTickUnit) - Method in class org.jfree.chart.axis.DateAxis: Sets the tick unit for the axis.
setTickUnit(DateTickUnit, boolean, boolean) - Method in class org.jfree.chart.axis.DateAxis: Sets the tick unit attribute without any other side effects.
setTickUnit(NumberTickUnit) - Method in class org.jfree.chart.axis.NumberAxis: Sets the tick unit for the axis and sends an AxisChangeEvent to all registered listeners.
setTickUnit(NumberTickUnit, boolean, boolean) - Method in class org.jfree.chart.axis.NumberAxis: Sets the tick unit for the axis and, if requested, sends an AxisChangeEvent to all registered listeners.
setTickValues(double[]) - Method in class org.jfree.chart.ui.ColorPalette: Sets the tick values.
setTickValues(List) - Method in class org.jfree.chart.ui.ColorPalette: Store ticks.
setTiled(boolean) - Method in class org.graffiti.graphics.ImageAttribute: Sets the 'tiled'-value.
setTime(double) - Method in class org.vanted.animation.data.TimePoint
setTime(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample
setTime(int) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface
setTime(long, TimeUnit) - Method in class org.vanted.animation.data.TimePoint: Sets the time at which the data point's data value should be expressed.
setTimeBase(RegularTimePeriod) - Method in class org.jfree.data.time.DynamicTimeSeriesCollection: Fill the pointsInTime with times using TimePeriod.next(): Will silently return if the time array was already populated.
setTimeID(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DataRowExcelExport
setTimeline(Timeline) - Method in class org.jfree.chart.axis.DateAxis: Sets the underlying timeline to use for this axis.
setTimeSeries(boolean) - Method in class org.jfree.data.JDBCXYDataset: Sets a flag that indicates whether or not the data represents a time series.
setTimeUnit(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample
setTimeUnit(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface
setTimeUnit(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.DataRowExcelExport
setTimeUnit(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataFileReader
SettingsHelperDefaultIsFalse - Class in org
SettingsHelperDefaultIsFalse() - Constructor for class org.SettingsHelperDefaultIsFalse
SettingsHelperDefaultIsTrue - Class in org
SettingsHelperDefaultIsTrue() - Constructor for class org.SettingsHelperDefaultIsTrue
setTipRadius(double) - Method in class org.jfree.chart.annotations.XYPointerAnnotation: Sets the tip radius.
setTitle(String) - Method in class org.FolderPanel
setTitle(String) - Method in class org.graffiti.editor.GraffitiFrame
setTitle(String) - Method in class org.graffiti.editor.GraffitiInternalFrame: Sets the title of this frame and its associated button and menu button.
setTitle(String) - Method in class org.graffiti.editor.MainFrame
setTitle(String) - Method in class org.jfree.chart.JFreeChart: Sets the chart title.
setTitle(String) - Method in class org.jfree.chart.StandardLegend: Sets the title of the legend and sends a LegendChangeEvent to all registered listeners.
setTitle(TextTitle) - Method in class org.jfree.chart.JFreeChart: Sets the title for the chart.
setTitleFont(Font) - Method in class org.jfree.chart.StandardLegend: Sets the title font and sends a LegendChangeEvent to all registered listeners.
setTitleProperties(Title) - Method in class org.jfree.chart.ui.TitlePropertyEditPanel: Sets the properties of the specified title to match the properties defined on this panel.
setTooltip(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
SetToolTipAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection
SetToolTipAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SetToolTipAlgorithm
setToolTipGenerator(CategoryToolTipGenerator) - Method in class org.jfree.chart.renderer.AbstractCategoryItemRenderer: Sets the tool tip generator for ALL series and sends a RendererChangeEvent to all registered listeners.
setToolTipGenerator(CategoryToolTipGenerator) - Method in interface org.jfree.chart.renderer.CategoryItemRenderer: Sets the tool tip generator for ALL series and sends a RendererChangeEvent to all registered listeners.
setToolTipGenerator(ContourToolTipGenerator) - Method in class org.jfree.chart.plot.ContourPlot: Sets the tool tip generator.
setToolTipGenerator(PieToolTipGenerator) - Method in class org.jfree.chart.plot.PiePlot: Sets the tool tip generator and sends a PlotChangeEvent to all registered listeners.
setToolTipGenerator(XYToolTipGenerator) - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer: Sets the tool tip generator for ALL series and sends a RendererChangeEvent to all registered listeners.
setToolTipGenerator(XYToolTipGenerator) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the tool tip generator for ALL series and sends a RendererChangeEvent to all registered listeners.
setToolTipText(String) - Method in class org.jfree.chart.entity.ChartEntity: Sets the tool tip text.
setToolTipText(Attributable, String) - Static method in class org.AttributeHelper
setTop(double) - Method in class org.jfree.chart.axis.AxisSpace: Sets the top space.
setTopCategoryLabelPosition(CategoryLabelPosition) - Method in class org.jfree.chart.axis.CategoryAxis: Deprecated.
Use setCategoryLabelPositions(...).
setTopText(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.ManageAddonDialog
setTotal(double) - Method in class org.jfree.chart.plot.PiePlotState: Sets the total.
setTotalFormatter(NumberFormat) - Method in class org.jfree.chart.demo.ExtendedStackedBarRenderer: Sets the total formatter.
setTranslate(double) - Method in class org.jfree.chart.demo.SampleXYDataset: Sets the translation constant for the x-axis.
setTranspose(boolean) - Method in class org.jfree.data.JDBCCategoryDataset: Sets a flag that controls whether or not the table values are transposed when added to the dataset.
setTreatment(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
setTreatment(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
setTreeMap(LinkedList<?>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.rt_tree.TreeContainer
setTriggerFunction(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
setTtestInfo(TtestInfo) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample
setTtestInfo(TtestInfo) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface
setTtestInfoSampleIsReference(Node) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper
setTTestSetSampleSignificane(Node, boolean, double) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.XPathHelper
setType(int) - Method in class org.jfree.chart.event.ChartChangeEvent: Sets the event type.
setType(int) - Method in class org.jfree.chart.event.ChartProgressEvent: Sets the event type.
setType(EntryType) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Entry
setType(ReactionType) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Reaction
setType(RelationType) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Relation
setType(HistogramType) - Method in class org.jfree.data.statistics.HistogramDataset: Sets the histogram type and sends a DatasetChangeEvent to all registered listeners.
setTypeManager(DataMappingTypeManagerInterface) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment
setUndoSupport(UndoableEditSupport) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.kegg_bar.ClusterHelperToolbarComponent
setUndoSupport(UndoableEditSupport) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.zoomfit.AlignNodesComponent
setUndoSupport(UndoableEditSupport) - Method in class org.graffiti.plugin.tool.AbstractUndoableTool: Sets the undo support object this object uses.
setUndoSupport(UndoableEditSupport) - Method in interface org.graffiti.undo.Undoable: Sets the undo support object this object uses.
setUnit(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurement
setUnit(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurementInterface
setUnit(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverage
setUnit(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverageInterface
setUnits(int) - Method in class org.jfree.chart.plot.JThermometer: Sets the unit type.
setUnits(int) - Method in class org.jfree.chart.plot.ThermometerPlot: Sets the units to be displayed in the thermometer.
setUnits(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLCompartment
setUnits(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLParameter
setUnits(String) - Method in class org.jfree.chart.plot.MeterPlot: Sets the units for the dial.
setUnits(String) - Method in class org.jfree.chart.plot.ThermometerPlot: Sets the unit type.
setUnits(String) - Method in class org.jfree.data.DefaultMeterDataset: Deprecated.

Sets the measurement unit description.
setUnits(Node, String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter
setUpArrow(Shape) - Method in class org.jfree.chart.axis.ValueAxis: Sets the shape that can be displayed as an arrow pointing upwards at the end of an axis line and sends an AxisChangeEvent to all registered listeners.
setUpInConstraints() - Method in class placement.Block
setUpOutConstraints() - Method in class placement.Block
setUpPaint(Paint) - Method in class org.jfree.chart.renderer.CandlestickRenderer: Sets the paint used to fill candles when the price moves up from open to close.
setUpperBound(double) - Method in class org.jfree.chart.axis.ValueAxis: Sets the upper bound for the axis range.
setUpperBound(double) - Method in class org.jfree.chart.plot.ThermometerPlot: Sets the upper bound for the thermometer.
setUpperMargin(double) - Method in class org.jfree.chart.axis.CategoryAxis: Sets the upper margin for the axis and sends an AxisChangeEvent to all registered listeners.
setUpperMargin(double) - Method in class org.jfree.chart.axis.ValueAxis: Sets the upper margin for the axis (as a percentage of the axis range) and sends an AxisChangeEvent to all registered listeners.
setUrl(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.JLabelHTMLlink
setURL(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
setURL(String) - Method in class org.vanted.updater.HttpHttpsURL: Set URL's spec.
SetURLAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection
SetURLAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SetURLAlgorithm
setURLGenerator(int, int, CategoryURLGenerator) - Method in class org.jfree.chart.renderer.CategoryURLGeneratorTable: Deprecated.

Sets the URL generator for a cell in the table.
setURLGenerator(PieURLGenerator) - Method in class org.jfree.chart.plot.PiePlot: Sets the URL generator and sends a PlotChangeEvent to all registered listeners.
setURLGenerator(XYURLGenerator) - Method in class org.jfree.chart.plot.ContourPlot: Sets the URL generator for HTML image maps.
setURLGenerator(XYURLGenerator) - Method in class org.jfree.chart.renderer.AbstractXYItemRenderer: Sets the URL generator for HTML image maps.
setURLGenerator(XYURLGenerator) - Method in interface org.jfree.chart.renderer.XYItemRenderer: Sets the URL generator for HTML image maps.
setURLText(String) - Method in class org.jfree.chart.entity.ChartEntity: Sets the URL text.
setUseFillPaintForShapeOutline(boolean) - Method in class org.jfree.chart.renderer.LineAndShapeRenderer: Sets the flag that controls whether the fill paint is used for shape outlines.
setUseFullCpuPower(boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.threading.SystemAnalysis
setUseGradient(double) - Method in class org.graffiti.graphics.GraphElementGraphicAttribute
setUseOutlinePaint(boolean) - Method in class org.jfree.chart.renderer.XYLineAndShapeRenderer: Sets the flag that controls whether the outline paint is used to draw shape outlines, and sends a RendererChangeEvent to all registered listeners.
setUser_description(String) - Method in class org.graffiti.attributes.AttributeDescription
setUserData(Object) - Method in class qmwi.kseg.som.CSV_SOM_dataEntry
setUserData(Object) - Method in interface qmwi.kseg.som.SOMdataEntry
setUseSubrangePaint(boolean) - Method in class org.jfree.chart.plot.ThermometerPlot: Sets the range colour change option.
setUseTransparency(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithmParams
setUseValuesFromTriggerTime(Boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventHelper
setValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.ChartColorAttributeEditor
setValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_colors.LineModeAttributeEditor
setValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartAttributeEditor
setValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.chart_settings.ChartsColumnAttributeEditor
setValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.cluster_colors.ClusterColorAttributeEditor
setValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundImageAttributeEditor
setValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.compound_image.CompoundImagePositionAttributeEditor
setValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_settings.LabelFontAttributeEditor
setValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_label_style.LabelStyleAttributeEditor
setValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.font_settings.FontAttributeEditor
setValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggGroupPartAttributeEditor
setValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionIdAttributeEditor
setValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggReactionTypeAttributeEditor
setValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationSubTypeAttributeEditor
setValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggRelationTypeAttributeEditor
setValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.KeggTypeAttributeEditor
setValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.label_alignment.LabelAlignmentAttributeEditor
setValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttributeEditor
setValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttributeEditor
setValue() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.enhanced_attribute_editors.EnhDoubleEditComponent
setValue() - Method in class org.graffiti.plugin.editcomponent.ComboBoxEditComponent: Sets the value of the displayable specified in the JComponent.
setValue() - Method in class org.graffiti.plugin.editcomponent.EdgeEditComponent
setValue() - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
setValue() - Method in class org.graffiti.plugin.editcomponent.NodeEditComponent
setValue() - Method in class org.graffiti.plugin.editcomponent.NumberEditComponent: Sets the value of the displayable specified in the JComponent.
setValue() - Method in class org.graffiti.plugin.editcomponent.SpinnerEditComponent: Sets the value of the displayable, specified in the JComponent.
setValue() - Method in class org.graffiti.plugin.editcomponent.StandardValueEditComponent: Standard edit component is not editable.
setValue() - Method in interface org.graffiti.plugin.editcomponent.ValueEditComponent: Sets the value of the Displayable specified in the JComponent.
setValue() - Method in class org.graffiti.plugins.editcomponents.defaults.BooleanEditComponent: Sets the value of the displayable specified in the JComponent.
setValue() - Method in class org.graffiti.plugins.editcomponents.defaults.ColorChooserEditComponent: Sets the value of the displayable specified in the JComponent.
setValue() - Method in class org.graffiti.plugins.editcomponents.defaults.LineModeEditComponent: Sets the value of the displayable specified in the JComponent.
setValue() - Method in class org.graffiti.plugins.editcomponents.defaults.MultiFileSelectionEditComponent
setValue() - Method in class org.graffiti.plugins.editcomponents.defaults.NodeShapeEditComponent
setValue() - Method in class org.graffiti.plugins.editcomponents.defaults.StringEditComponent: Sets the value of the displayable specified in the JComponent.
setValue() - Method in class org.graffiti.plugins.views.defaults.DockingAttributeEditor
setValue() - Method in class org.graffiti.plugins.views.defaults.GradientFillAttributeEditor
setValue() - Method in class org.graffiti.plugins.views.defaults.ThicknessAttributeEditor
setValue() - Method in class org.vanted.plugins.layout.stressminimization.parameters.LandmarkSliderComponent
setValue() - Method in class org.vanted.plugins.layout.stressminimization.parameters.SliderComponent
setValue(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.SetAbleBoolean
setValue(double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurement
setValue(double) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NumericMeasurementInterface
setValue(double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverage
setValue(double) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleAverageInterface
setValue(double) - Method in class org.jfree.chart.annotations.CategoryTextAnnotation: Sets the value.
setValue(double) - Method in class org.jfree.chart.plot.JThermometer: Sets the value of the thermometer.
setValue(double) - Method in class org.jfree.data.DefaultMeterDataset: Deprecated.

Sets the value.
setValue(double, Comparable, Comparable) - Method in class org.jfree.data.DefaultCategoryDataset: Adds or updates a value in the table.
setValue(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.ClusterSplashScreen
setValue(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.DBEsplashScreen
setValue(int) - Method in class org.graffiti.editor.SplashScreen
setValue(int) - Method in interface org.graffiti.editor.SplashScreenInterface
setValue(int) - Method in interface org.graffiti.util.ProgressViewer: Sets the progress viewer's current value to n.
setValue(int, double) - Method in class org.jfree.chart.renderer.HighLow: Sets either OPEN or Close value depending on the valueType.
setValue(Comparable, double) - Method in class org.jfree.data.DefaultPieDataset: Sets the data value for a key.
setValue(Comparable, Number) - Method in class org.jfree.data.DefaultKeyedValueDataset: Sets the value for the dataset and sends a DatasetChangeEvent to all registered listeners.
setValue(Comparable, Number) - Method in class org.jfree.data.DefaultKeyedValues: Updates an existing value, or adds a new value to the collection.
setValue(Comparable, Number) - Method in class org.jfree.data.DefaultPieDataset: Sets the data value for a key.
setValue(Double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLParameter
setValue(Integer) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.database_processing.go_cluster_histogram.MyEntry
setValue(Number) - Method in class org.jfree.chart.plot.JThermometer: Sets the value of the thermometer.
setValue(Number) - Method in class org.jfree.data.DefaultKeyedValue: Sets the value.
setValue(Number) - Method in class org.jfree.data.DefaultMeterDataset: Deprecated.

Sets the value for the dataset.
setValue(Number) - Method in class org.jfree.data.DefaultValueDataset: Sets the value.
setValue(Number) - Method in class org.jfree.data.time.TimePeriodValue: Sets the value for this data item.
setValue(Number) - Method in class org.jfree.data.time.TimeSeriesDataItem: Sets the value for this data item.
setValue(Number) - Method in class org.jfree.data.xml.ItemHandler: Sets the value.
setValue(Number, Comparable, Comparable) - Method in class org.jfree.data.DefaultCategoryDataset: Adds or updates a value in the table.
setValue(Number, Comparable, Comparable) - Method in class org.jfree.data.DefaultKeyedValues2D: Adds or updates a value.
setValue(Number, Comparable, Comparable) - Method in class org.jfree.data.WaferMapDataset: Sets a value in the dataset and updates min and max value entries.
setValue(Object) - Method in class org.graffiti.attributes.AbstractAttribute: Sets the value of this Attribute to the given value.
setValue(Object) - Method in interface org.graffiti.attributes.Attribute: Sets the value of this Attribute to the given value.
setValue(Object) - Method in interface org.graffiti.plugin.Displayable: Sets the encapsulated object.
setValue(Object) - Method in class org.graffiti.plugin.parameter.AbstractSingleParameter
setValue(Object) - Method in class org.graffiti.plugin.parameter.BooleanParameter: Sets the value of the AttributeParameter.
setValue(Object) - Method in class org.graffiti.plugin.parameter.ColorParameter
setValue(Object) - Method in class org.graffiti.plugin.parameter.DoubleParameter: Sets the value of the AttributeParameter.
setValue(Object) - Method in class org.graffiti.plugin.parameter.EdgeParameter: Sets the value of the AttributeParameter.
setValue(Object) - Method in class org.graffiti.plugin.parameter.EnumParameter
setValue(Object) - Method in class org.graffiti.plugin.parameter.FloatParameter: Sets the value of the AttributeParameter.
setValue(Object) - Method in class org.graffiti.plugin.parameter.IntegerParameter: Sets the value of the AttributeParameter.
setValue(Object) - Method in class org.graffiti.plugin.parameter.NodeParameter: Sets the value of the AttributeParameter.
setValue(Object) - Method in class org.graffiti.plugin.parameter.ObjectParameter
setValue(Object) - Method in class org.graffiti.plugin.parameter.SelectionParameter: Sets the value of the AttributeParameter.
setValue(Object) - Method in class org.graffiti.plugin.parameter.StringParameter: Sets the value of the AttributeParameter.
setValue(Object) - Method in class org.vanted.plugins.layout.stressminimization.parameters.SliderParameter
setValue(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.Id
setValue(Collection<Displayable>) - Method in class org.graffiti.plugin.editcomponent.JComponentParameterEditor
setValue(Collection<Displayable>) - Method in interface org.graffiti.plugin.editcomponent.ValueEditComponent
setValue(Collection<Displayable>) - Method in class org.graffiti.plugin.editcomponent.ValueEditComponentAdapter
setValue(Node, Double) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLLocalParameter
setValueAt(Object, int, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.TreeTableModelAdapter
setValueAt(Object, int, int) - Method in class org.graffiti.plugins.views.matrix.MatrixModel
setValueAt(Object, int, int) - Method in class org.jfree.data.TimeSeriesTableModel: Updates the time series.
setValueAt(Object, int, int) - Method in class org.jfree.data.XYDatasetTableModel: Updates the XYDataset if allowed.
setValueAt(Object, Object, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.AbstractTreeTableModel
setValueAt(Object, Object, int) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.TreeTableModel: Sets the value for node node, at column number column.
setValueEditContainer(ValueEditContainer) - Method in class org.graffiti.editor.dialog.AbstractParameterDialog: Sets the ValueEditContainer of this ParameterDialog to the specified value.
setValueEditContainer(ValueEditContainer) - Method in interface org.graffiti.editor.dialog.ParameterDialog: Sets the ValueEditContainer of this ParameterDialog to the specified value.
setValueFont(Font) - Method in class org.jfree.chart.plot.JThermometer: Sets the value font.
setValueFont(Font) - Method in class org.jfree.chart.plot.MeterPlot: Sets the font used to display the value label.
setValueFont(Font) - Method in class org.jfree.chart.plot.ThermometerPlot: Sets the font used to display the current value.
setValueFormat(DecimalFormat) - Method in class org.jfree.chart.plot.JThermometer: Sets the value format for the thermometer.
setValueFormat(NumberFormat) - Method in class org.jfree.chart.plot.ThermometerPlot: Sets the formatter for the value label.
setValueLocation(int) - Method in class org.jfree.chart.plot.JThermometer: Sets the location at which the temperature value is displayed.
setValueLocation(int) - Method in class org.jfree.chart.plot.ThermometerPlot: Sets the location at which the current value is displayed.
setValuePaint(Paint) - Method in class org.jfree.chart.plot.JThermometer: Sets the value paint.
setValuePaint(Paint) - Method in class org.jfree.chart.plot.MeterPlot: Sets the paint used to display the value label.
setValuePaint(Paint) - Method in class org.jfree.chart.plot.ThermometerPlot: Sets the paint used to display the current value.
setValuesBallSize(Double) - Method in class org.graffiti.plugin.parameter.DoubleParameter: Set new intervalue distance.
setValuesBallSize(Float) - Method in class org.graffiti.plugin.parameter.FloatParameter: Set new intervalue distance.
setValuesBallSize(Integer) - Method in class org.graffiti.plugin.parameter.IntegerParameter: Set new intervalue distance.
setVariable(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLAssignmentRule
setVariable(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLEventAssignmentHelper
setVariable(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLRateRule
setVariety(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
setVariety(String) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
setVersion(String) - Method in class org.graffiti.managers.pluginmgr.PluginDependency: Sets the version.
setVersion(String) - Method in class org.graffiti.managers.pluginmgr.PluginDescription: Sets the version.
setVerticalAlignment(VerticalAlignment) - Method in class org.jfree.chart.title.Title: Sets the vertical alignment for the title, and notifies any registered listeners of the change.
setVerticalAxisTrace(boolean) - Method in class org.jfree.chart.ChartPanel: A flag that controls trace lines on the vertical axis.
setVerticalCategoryLabels(boolean) - Method in class org.jfree.chart.axis.CategoryAxis: Deprecated.
Use the get/setXXXCategoryLabelPosition methods.
setVerticalTickLabels(boolean) - Method in class org.jfree.chart.axis.ValueAxis: Sets the flag that controls whether the tick labels are displayed vertically (that is, rotated 90 degrees from horizontal).
setVerticalZoom(boolean) - Method in class org.jfree.chart.ChartPanel: A flag that controls mouse-based zooming on the vertical axis.
setView(View) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.navigation.NavigationComponentView
setViewID(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.NodeHelper
setViewID(int) - Method in class org.graffiti.graph.AbstractGraphElement
setViewID(int) - Method in interface org.graffiti.graph.GraphElement
setVisibilityOfChildElements(Collection<Node>, boolean) - Static method in class org.AttributeHelper
setVisible(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.ManageAddonDialog
setVisible(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.ClusterSplashScreen
setVisible(boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.DBEsplashScreen
setVisible(boolean) - Method in class org.graffiti.editor.MainFrame
setVisible(boolean) - Method in interface org.graffiti.editor.SplashScreenInterface
setVisible(boolean) - Method in class org.graffiti.managers.pluginmgr.PluginManagerDialog: Displays this dialog.
setVisible(boolean) - Method in class org.jfree.chart.axis.Axis: Sets a flag that controls whether or not the axis is visible and sends an AxisChangeEvent to all registered listeners.
setWallPaint(Paint) - Method in class org.jfree.chart.renderer.BarRenderer3D: Sets the paint used to hightlight the left and bottom walls in the plot background.
setWarningPaint(Paint) - Method in class org.jfree.chart.plot.MeterPlot: Sets the paint used to display the 'warning' range.
setWarningRange(Number, Number) - Method in class org.jfree.data.DefaultMeterDataset: Deprecated.

Sets the warning range for the dataset.
setWarningRange(Range) - Method in class org.jfree.chart.plot.MeterPlot: Sets the warning range for the dial.
setWeight(int) - Method in class org.jfree.chart.plot.CategoryPlot: Sets the weight for the plot.
setWeight(int) - Method in class org.jfree.chart.plot.XYPlot: Sets the weight for the plot.
setWeight(int, double) - Method in class qmwi.kseg.som.diagram.ClassesNeuron: Insert the method's description here.
setWeights(double[]) - Method in class qmwi.kseg.som.diagram.ClassesNeuron: Insert the method's description here.
setWeightSize(int) - Method in class qmwi.kseg.som.diagram.ClassesNeuron: Insert the method's description here.
setWidth(double) - Method in class org.graffiti.graphics.DimensionAttribute: Sets the 'width'-value.
setWidth(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Graphics
setWidth(Node, double) - Static method in class org.AttributeHelper
setWordWrap(int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.RSSFeedManager
setWriter() - Static method in class qmwi.kseg.som.diagram.Aus: Insert the method's description here.
setX(double) - Method in class org.graffiti.graphics.CoordinateAttribute: Sets the 'x1'-value.
setX(double) - Method in class org.graffiti.graphics.Port: Sets the x coordinate of this port.
setX(double) - Method in class org.jfree.chart.annotations.XYTextAnnotation: Sets the x coordinate for the text anchor point (measured against the domain axis).
setX(double) - Method in class org.jfree.chart.DrawableLegendItem: Set the x-coordinate for the item's location.
setX(double) - Method in class org.vanted.animation.data.Point2DTimePoint
setXPosition(TimePeriodAnchor) - Method in class org.jfree.data.time.TimePeriodValuesCollection: Sets the position of the x axis within each time period.
setXPosition(TimePeriodAnchor) - Method in class org.jfree.data.time.TimeSeriesCollection: Sets the position within each time period that is used for the X values when the collection is used as an XYDataset.
setXSymbolicValues(String[]) - Method in class org.jfree.chart.demo.SampleXYSymbolicDataset: Sets the list of X symbolic values.
setXValue(double[]) - Method in class org.jfree.chart.ClipPath: Sets the xValue.
setXValue(int, int, Number) - Method in class org.jfree.chart.demo.SampleXYSymbolicDataset: Sets the x-value for the specified series and item with the specified new Number value.
setXY(Node, double, double) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder_no_cache.MyTools
setXY(Node, double, double) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.MyTools
setXYZ(Node, double, double, double) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.MyTools
setY(double) - Method in class org.graffiti.graphics.CoordinateAttribute: Sets the 'x2'-value.
setY(double) - Method in class org.graffiti.graphics.Port: Sets the y ccordinate of this port.
setY(double) - Method in class org.jfree.chart.annotations.XYTextAnnotation: Sets the y coordinate for the text anchor point (measured against the range axis).
setY(double) - Method in class org.jfree.chart.DrawableLegendItem: Set the y-coordinate for the item's location.
setY(double) - Method in class org.vanted.animation.data.Point2DTimePoint
setY(Number) - Method in class org.jfree.data.XYDataItem: Sets the y-value for this data pair.
setYSymbolicValues(String[]) - Method in class org.jfree.chart.demo.SampleXYSymbolicDataset: Sets the list of Y symbolic values.
setYSymbolicValues(String[]) - Method in class org.jfree.chart.demo.SampleYSymbolicDataset: Sets the list of symbolic values.
setYValue(double[]) - Method in class org.jfree.chart.ClipPath: Sets the yValue.
setYValue(int, int, Number) - Method in class org.jfree.chart.demo.SampleXYSymbolicDataset: Sets the y-value for the specified series and item with the specified new Number value.
setYValue(int, int, Number) - Method in class org.jfree.chart.demo.SampleYSymbolicDataset: Sets the y-value for the specified series and item with the specified new Number value.
setZoomInFactor(double) - Method in class org.jfree.chart.ChartPanel: Sets the zoom in factor.
setZoomOutFactor(double) - Method in class org.jfree.chart.ChartPanel: Sets the zoom out factor.
setZoomToOnePage(boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.print.PrintEnvironment
setZoomTriggerDistance(int) - Method in class org.jfree.chart.ChartPanel: Sets the zoom trigger distance.
SHA512 - org.graffiti.editor.HashType
SHADOWCOLOR - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
SHADOWOFFSET - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
SHAPE - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
SHAPE_DESC_PATH - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants: Path to shape description attribute
SHAPE_PATH - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants: Path to shape attribute
SHAPEDESCRIPTION - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
ShapeDescriptionAttribute - Class in org.graffiti.graphics
ShapeDescriptionAttribute(String) - Constructor for class org.graffiti.graphics.ShapeDescriptionAttribute: Constructor for ShapeDescriptionAttribute.
ShapeFactory - Interface in org.jfree.chart: Deprecated.
This interface is no longer used, shapes are obtained from the DrawingSupplier.
shapeHeightCorrection() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.MultiComplexShape
shapeHeightCorrection() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.MultiEllipseShape
shapeHeightCorrection() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.MultiNucleicAcidFeatureShape
shapeHeightCorrection() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.MultiRectangleShape
shapeHeightCorrection() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNMultiStadiumShape
shapeHeightCorrection() - Method in interface org.graffiti.plugin.view.NodeShape
shapeHeightCorrection() - Method in class org.graffiti.plugins.views.defaults.CircleNodeShape
shapeHeightCorrection() - Method in class org.graffiti.plugins.views.defaults.EllipseNodeShape
shapeHeightCorrection() - Method in class org.graffiti.plugins.views.defaults.PolygonalNodeShape
shapeHeightCorrection() - Method in class org.graffiti.plugins.views.defaults.RectangleNodeShape
ShapeNotFoundException - Exception in org.graffiti.plugin.view: DOCUMENT ME!
ShapeNotFoundException(String) - Constructor for exception org.graffiti.plugin.view.ShapeNotFoundException: Constructs a ShapeNotFoundException.
SHAPES - Static variable in class org.jfree.chart.renderer.AreaXYRenderer: Deprecated.

Useful constant for specifying the type of rendering (shapes only).
SHAPES - Static variable in class org.jfree.chart.renderer.LineAndShapeRenderer: Useful constant for specifying the type of rendering (shapes only).
SHAPES - Static variable in class org.jfree.chart.renderer.StandardXYItemRenderer: Constant for the type of rendering (shapes only).
SHAPES - Static variable in class org.jfree.chart.renderer.XYAreaRenderer: Useful constant for specifying the type of rendering (shapes only).
SHAPES - Static variable in class org.jfree.chart.renderer.XYStepAreaRenderer: Useful constant for specifying the type of rendering (shapes only).
SHAPES_AND_LINES - Static variable in class org.jfree.chart.renderer.AreaXYRenderer: Deprecated.

Useful constant for specifying the type of rendering (shapes and lines).
SHAPES_AND_LINES - Static variable in class org.jfree.chart.renderer.LineAndShapeRenderer: Useful constant for specifying the type of rendering (shapes and lines).
SHAPES_AND_LINES - Static variable in class org.jfree.chart.renderer.StandardXYItemRenderer: Constant for the type of rendering (shapes and lines).
SHAPES_AND_LINES - Static variable in class org.jfree.chart.renderer.XYAreaRenderer: Useful constant for specifying the type of rendering (shapes and lines).
shapeSize - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ChartOptions
shapeWidthCorrection() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.MultiComplexShape
shapeWidthCorrection() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.MultiEllipseShape
shapeWidthCorrection() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.MultiNucleicAcidFeatureShape
shapeWidthCorrection() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.MultiRectangleShape
shapeWidthCorrection() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SBGNMultiStadiumShape
shapeWidthCorrection() - Method in interface org.graffiti.plugin.view.NodeShape
shapeWidthCorrection() - Method in class org.graffiti.plugins.views.defaults.CircleNodeShape
shapeWidthCorrection() - Method in class org.graffiti.plugins.views.defaults.EllipseNodeShape
shapeWidthCorrection() - Method in class org.graffiti.plugins.views.defaults.PolygonalNodeShape
shapeWidthCorrection() - Method in class org.graffiti.plugins.views.defaults.RectangleNodeShape
SheetHandler - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xlsx: See org.xml.sax.helpers.DefaultHandler javadocs
SheetHandler() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xlsx.SheetHandler
shiftRight - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.SpecialTableValue
ShipNeedle - Class in org.jfree.chart.needle: A needle in the shape of a ship, for use with the CompassPlot class.
ShipNeedle() - Constructor for class org.jfree.chart.needle.ShipNeedle
ShortAttribute - Class in org.graffiti.attributes: Contains a short
ShortAttribute(String) - Constructor for class org.graffiti.attributes.ShortAttribute: Constructs a new instance of a ShortAttribute.
ShortAttribute(String, short) - Constructor for class org.graffiti.attributes.ShortAttribute: Constructs a new instance of a ShortAttribute with the given value.
ShortAttribute(String, Short) - Constructor for class org.graffiti.attributes.ShortAttribute: Constructs a new instance of a ShortAttribute with the given value.
ShortcutsOptionPane - Class in org.graffiti.editor.options: An option pane for shortcuts.
ShortcutsOptionPane() - Constructor for class org.graffiti.editor.options.ShortcutsOptionPane: Constructor for ShortcutsOptionPane.
ShortEditComponent - Class in org.graffiti.plugins.editcomponents.defaults: Represents a gui component, which handles short values.
ShortEditComponent(Displayable) - Constructor for class org.graffiti.plugins.editcomponents.defaults.ShortEditComponent: Creates a new ShortEditComponent object.
ShortestPathSelectionAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths
ShortestPathSelectionAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.shortest_paths.ShortestPathSelectionAlgorithm
shouldContinueTransactionWithProgress(long, long, long, double) - Method in class org.vanted.plugins.layout.adaptagrams.edgerouting.RouterWithProgress: This method gets called from the native Adaptagrams library to provide routing progress information.
shouldSelectCell(EventObject) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.AbstractCellEditor
showAbout() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_dbe.MenuItemInfoDialog
showAllChildren - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.HideOrShowChildNodes.HideOrShowOperation
showAndHighlightSidePanelSubTab(String, String) - Method in class org.graffiti.editor.MainFrame
showAndHighlightSidePanelTab(String, boolean) - Method in class org.graffiti.editor.MainFrame
showCategoryAxis - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ChartOptions
ShowClusterGraphAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands
ShowClusterGraphAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.ShowClusterGraphAlgorithm
showDataDialog() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData
showDataDialog(HashMap<Integer, String>) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData
showDialog() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings.SetJavaMemoryMacOS
showDirectChildren - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.hierarchy.HideOrShowChildNodes.HideOrShowOperation
showEmpty - Variable in class org.graffiti.plugin.editcomponent.AbstractValueEditComponent: Set to true if this component should display nothing instead of the value of the attribute it represents.
showEmpty() - Method in class org.graffiti.plugin.inspector.EditPanel
showEmpty() - Method in class org.graffiti.plugins.inspectors.defaults.DefaultEditPanel
showError(String) - Method in class org.graffiti.editor.StatusBar: Shows the given error message in the status bar for DELAY seconds.
showError(String, int) - Method in class org.graffiti.editor.StatusBar: Shows the given error message in the status bar for the given interval.
showFontChooser(Displayable) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.FontChooser
showGraph(Graph, ActionEvent) - Method in class org.graffiti.editor.MainFrame
showGraph(Graph, ActionEvent, LoadSetting) - Method in class org.graffiti.editor.MainFrame
showGridCategory - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ChartOptions
showGridRange - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ChartOptions
showImage(BufferedImage, String) - Static method in class org.graffiti.editor.GravistoService
ShowImage - Class in org.graffiti.editor
ShowImage(BufferedImage) - Constructor for class org.graffiti.editor.ShowImage
showInBrowser(String) - Static method in class org.AttributeHelper
showInfo(String) - Method in class org.graffiti.editor.StatusBar: Shows the given message in the status bar for DELAY seconds.
showInfo(String, int) - Method in class org.graffiti.editor.StatusBar: Shows the given message in the status bar for the given interval.
showKgmlErrors(Collection<Gml2PathwayErrorInformation>, Collection<Gml2PathwayWarningInformation>) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Pathway
ShowLayoutTab - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph
ShowLayoutTab() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph.ShowLayoutTab
showLegend - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ChartOptions
showLines - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ChartOptions
showManageAddonDialog() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.AddonManagerPlugin: Shows Add-on-Manage-Dialog.
showManageAddonDialog(Window) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.AddonManagerPlugin: Shows Add-on-Manage-Dialog.
showManageAddonDialog(String, boolean) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.addons.AddonManagerPlugin
showMappedDataForSelection(Collection<GraphElement>, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.xml_attribute.XMLAttributeEditor
showMenuIcon() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.apply_from_graph.ApplyGraphLayout
showMenuIcon() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.WebsiteGeneration
showMenuIcon() - Method in class org.graffiti.plugin.algorithm.AbstractAlgorithm: Default: no icon next to the menu item, which is created for this algorithm.
showMenuIcon() - Method in interface org.graffiti.plugin.algorithm.Algorithm: Override this method to give a different look and feel to the application, and to put the plugin icon next to the menu item in the main menu bar.
showMenuIcon() - Method in class org.graffiti.plugin.algorithm.ThreadSafeAlgorithm
showMenuIcon() - Method in class org.vanted.plugins.layout.stressminimization.BackgroundExecutionAlgorithm
showMessage(String, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskHelper
showMessage(String, MessageType) - Static method in class org.graffiti.editor.MainFrame: Method showMesssage displays a message on GUI components according to the specified type.
showMessage(String, MessageType, int) - Static method in class org.graffiti.editor.MainFrame: Method showMesssage displays a message on GUI components according to the specified type for the given interval.
showMessageDialog(Object, String, String[]) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.services.GUIhelper
showMessageDialog(String) - Method in class org.graffiti.editor.MainFrame: Shows an arbitrary message dialog.
showMessageDialog(String, String) - Static method in class org.graffiti.editor.MainFrame: Shows an arbitrary message dialog.
showMessageDialog(String, JComponent) - Static method in class org.graffiti.editor.MainFrame
showMessageDialogPlain(String, JComponent) - Static method in class org.graffiti.editor.MainFrame
showMessageDialogWithScrollBars(String, String) - Static method in class org.graffiti.editor.MainFrame
showMessageDialogWithScrollBars2(String, String) - Static method in class org.graffiti.editor.MainFrame
showMessageWindow(String, JComponent) - Static method in class org.graffiti.editor.MainFrame
showMessageWindow(String, JComponent, boolean) - Static method in class org.graffiti.editor.MainFrame
showMessageWindowUpdate(JFrame, String, JComponent) - Static method in class org.graffiti.editor.MainFrame
showMesssage(String, MessageType) - Method in interface org.graffiti.plugin.view.MessageListener: Method showMesssage displays a message on GUI components according to the specified type.
showOnlyHalfErrorBar - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ChartOptions
ShowOrHideImageAttributesAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe
ShowOrHideImageAttributesAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.ShowOrHideImageAttributesAlgorithm
showPattern(Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.TabPatternLayout
showPreferences() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_dbe.MenuItemInfoDialog
ShowPreferencesAction - Class in org.graffiti.editor.actions
ShowPreferencesAction(MainFrame) - Constructor for class org.graffiti.editor.actions.ShowPreferencesAction
showPreferencesFolder() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.WorkflowHelper: Deprecated.
showPreferencesFolder() - Static method in class org.graffiti.editor.actions.ShowPreferencesAction
showRangeAxis - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ChartOptions
showResult() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.data_mapping.DataMapping
showShapes - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ChartOptions
showSOMcentroidsAndClusterAssignmentSettings(Map, String[], Graph) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMguiHelper
ShowStatisticsTab - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest
ShowStatisticsTab() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.davidtest.ShowStatisticsTab
showStatusDialog() - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.info_dialog_dbe.DatabaseFileStatusService
showStdDevAsFillRange - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ChartOptions
showStdDevAsT - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ChartOptions
showTab(InspectorTab) - Method in class org.graffiti.plugin.inspector.SubtabHostTab
showTab(InspectorTab) - Method in class org.graffiti.plugins.inspectors.defaults.InspectorContainer
showUNCPathConfirmDialogForPath(File) - Static method in class org.UNCFileLocationCheck: Checks, if the given file is to be stored at a UNC network path.
showUNCPathConfirmDialogForPath(String) - Static method in class org.UNCFileLocationCheck: Checks, if the given path is a UNC network path.
showUpdateMessageDialog(String, String, String, String) - Static method in class org.vanted.updater.UpdateMessageDialog
showViewChooserDialog(boolean, boolean, ActionEvent) - Method in class org.graffiti.editor.MainFrame: Method showViewChooserDialog invokes a view chooser dialog for choosing view types.
showViewChooserDialog(EditorSession, boolean, ActionEvent) - Method in class org.graffiti.editor.MainFrame
showViewChooserDialog(EditorSession, boolean, ActionEvent, LoadSetting) - Method in class org.graffiti.editor.MainFrame
showViewChooserDialog(EditorSession, boolean, ActionEvent, LoadSetting, ConfigureViewAction) - Method in class org.graffiti.editor.MainFrame: Method showViewChooserDialog invokes a view chooser dialog for choosing view types.
showWarningPopup(String, int) - Static method in class org.graffiti.editor.MainFrame
showWarningPopup(String, int, Collection<WarningButton>) - Static method in class org.graffiti.editor.MainFrame
showXMLdata(ExperimentInterface) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentDataInfoPane
shrink(Rectangle2D, Rectangle2D) - Method in class org.jfree.chart.axis.AxisSpace: Shrinks an area by the space attributes.
shrinkLeftAndRight(Rectangle2D, Rectangle2D) - Method in class org.jfree.chart.axis.AxisSpace: Deprecated.
This method is no longer required.
shrinkTopAndBottom(Rectangle2D, Rectangle2D) - Method in class org.jfree.chart.axis.AxisSpace: Deprecated.
This method is no longer required.
sid - Static variable in class org.graffiti.plugins.modes.defaultEditMode.DefaultEditMode
SIDE_LINES - org.LabelFrameSetting
sidepanel - Variable in class org.graffiti.editor.MainFrame
SIFreader - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list: edges in list form S I T (Source Interaction Type Target) ===== n1 i1 n2 n2 i1 n3 n3 i2 n1
SIFreader() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.text_list.SIFreader
SIFWriter - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sif
SIFWriter() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.exporters.sif.SIFWriter
SigmoidInterpolator - Class in org.vanted.animation.interpolators
SigmoidInterpolator() - Constructor for class org.vanted.animation.interpolators.SigmoidInterpolator
signal() - Static method in class org.vanted.scaling.ScalerLoader: Signal that the main frame has loaded to scale its components.
SignalRenderer - Class in org.jfree.chart.renderer: A renderer that draws signals on an XYPlot.
SignalRenderer() - Constructor for class org.jfree.chart.renderer.SignalRenderer: Creates a new renderer.
SignalsDataset - Interface in org.jfree.data: An interface that adds signal information to an XYDataset.
similarColours(int, int, int, int, int, int, int) - Static method in class org.color.ColorUtil
similarColours(int, int, int, Color, int) - Static method in class org.color.ColorUtil
similarColours(Color, Color, int) - Static method in class org.color.ColorUtil
SimpleFormatter - Class in org.graffiti.util.logging: Provides a brief summary of the LogRecord in a human readable format.
SimpleFormatter() - Constructor for class org.graffiti.util.logging.SimpleFormatter
SimpleIntervalXYDataset - Class in org.jfree.chart.demo: A quick and dirty sample dataset.
SimpleIntervalXYDataset() - Constructor for class org.jfree.chart.demo.SimpleIntervalXYDataset: Creates a new dataset.
SimpleIntervalXYDataset2 - Class in org.jfree.chart.demo: A quick and dirty sample dataset.
SimpleIntervalXYDataset2(int) - Constructor for class org.jfree.chart.demo.SimpleIntervalXYDataset2: Creates a new dataset.
SimpleLabelComponent - Class in org.graffiti.plugins.attributecomponents.simplelabel: This component represents a label for a node or an edge.
SimpleLabelComponent() - Constructor for class org.graffiti.plugins.attributecomponents.simplelabel.SimpleLabelComponent: Instantiates an LabelComponent
SimpleModel - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels: Simple Model of a model from the Biomodels database, used to collect important meta-data for later use.
SimpleModel(String, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.SimpleModel: Constructor (builds a partial object).
SimpleModel(String, String, String, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.SimpleModel: Constructor (builds a complete object).
SimpleTimePeriod - Class in org.jfree.data.time: An arbitrary period of time, measured to millisecond precision using java.util.Date.
SimpleTimePeriod(Date, Date) - Constructor for class org.jfree.data.time.SimpleTimePeriod: Creates a new time allocation.
SineInterpolator - Class in org.vanted.animation.interpolators
SineInterpolator() - Constructor for class org.vanted.animation.interpolators.SineInterpolator
SingleFiledLayout - Class in info.clearthought.layout: SingleFiledLayout lays out components singled filed.
SingleFiledLayout() - Constructor for class info.clearthought.layout.SingleFiledLayout: Constructs an instance of SingleFiledLayout that will align components in a column using the default gap and LEFT justification.
SingleFiledLayout(int) - Constructor for class info.clearthought.layout.SingleFiledLayout: Constructs an instance of SingleFiledLayout using the default gap and LEFT or TOP justification.
SingleFiledLayout(int, int, int) - Constructor for class info.clearthought.layout.SingleFiledLayout: Constructs an instance of SingleFiledLayout.
SingleGraphElementEditComponent - Class in org.graffiti.plugin.editcomponent: This class provides an edit component for graph elements.
SingleParameter - Interface in org.graffiti.plugin.parameter: Tagging interface for Parameters that can be used in a ParameterList.
singletonSubset(int) - Method in class org.vanted.indexednodes.IndexedNodeSet
size - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.NodeCacheEntry: Vector contains the size of the node (width, height)
size - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.NodeCacheEntry3d: Vector contains the size of the node (width, height)
size() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition
size() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ConditionInterface
size() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment
size() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface
size() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Sample
size() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SampleInterface
size() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
size() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.SubstanceInterface
size() - Method in interface org.graffiti.attributes.CollectionAttribute
size() - Method in class org.graffiti.attributes.HashMapAttribute
size() - Method in class org.graffiti.attributes.LinkedHashMapAttribute
size() - Method in class org.jfree.chart.axis.TickUnits: Returns the number of tick units in this collection.
size() - Method in class org.vanted.indexednodes.IndexedComponent
size() - Method in class org.vanted.indexednodes.IndexedNodeSet
size() - Method in class placement.MaxPairingHeap
size() - Method in interface placement.MaxPriorityQueue
size() - Method in class placement.ScanListPriorityQueue
size() - Method in class placement.SlowPriorityQueue
SIZE - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SIZE - Static variable in class org.graffiti.editor.Rule
SIZE_HEIGHT - Static variable in class org.graffiti.editor.MainFrame: The default height of the main frame.
SIZE_WIDTH - Static variable in class org.graffiti.editor.MainFrame: The default width of the main frame.
SizeAnimation - Class in org.vanted.animation.animations: Animates the size of a Node object.
SizeAnimation(Attributable, List<Point2DTimePoint>, double) - Constructor for class org.vanted.animation.animations.SizeAnimation
SizeAnimation(Attributable, List<Point2DTimePoint>, double, double) - Constructor for class org.vanted.animation.animations.SizeAnimation
SizeAnimation(Attributable, List<Point2DTimePoint>, double, double, int) - Constructor for class org.vanted.animation.animations.SizeAnimation
SizeAnimation(Attributable, List<Point2DTimePoint>, double, double, int, Looper) - Constructor for class org.vanted.animation.animations.SizeAnimation
SizeAnimation(Attributable, List<Point2DTimePoint>, double, double, int, Looper, Interpolator) - Constructor for class org.vanted.animation.animations.SizeAnimation
SizeSetting - Enum in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter
SizeSettingDPIunit - Enum in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter
SizeSettingZoom - Enum in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter
SliderComponent - Class in org.vanted.plugins.layout.stressminimization.parameters
SliderComponent(Displayable) - Constructor for class org.vanted.plugins.layout.stressminimization.parameters.SliderComponent
SliderOptions - Class in org.vanted.plugins.layout.stressminimization.parameters
SliderOptions(int, int, double) - Constructor for class org.vanted.plugins.layout.stressminimization.parameters.SliderOptions
SliderOptions(int, int, double, boolean, boolean) - Constructor for class org.vanted.plugins.layout.stressminimization.parameters.SliderOptions
SliderOptions(int, int, double, boolean, boolean, Dictionary<Integer, JLabel>) - Constructor for class org.vanted.plugins.layout.stressminimization.parameters.SliderOptions
SliderParameter - Class in org.vanted.plugins.layout.stressminimization.parameters
SliderParameter(double, String, String, int, int) - Constructor for class org.vanted.plugins.layout.stressminimization.parameters.SliderParameter
SliderParameter(int, String, String, int, int, boolean, boolean) - Constructor for class org.vanted.plugins.layout.stressminimization.parameters.SliderParameter
SliderParameter(int, String, String, int, int, boolean, boolean, Dictionary<Integer, JLabel>) - Constructor for class org.vanted.plugins.layout.stressminimization.parameters.SliderParameter
SlowPriorityQueue<T extends Comparable<T>> - Class in placement
SlowPriorityQueue() - Constructor for class placement.SlowPriorityQueue
SMALL - org.FolderPanel.Iconsize
SMALL_LOG_VALUE - Static variable in class org.jfree.chart.axis.LogarithmicAxis: Smallest arbitrarily-close-to-zero value allowed.
smaller - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOperation
SmallNumberDemo - Class in org.jfree.chart.demo: A demo showing the use of very small numbers in a dataset.
SmallNumberDemo(String) - Constructor for class org.jfree.chart.demo.SmallNumberDemo: Creates a new demo instance.
SMOOTH - de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.BundleParallelEdges.Shapes
SMOOTH_CLASSNAME - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants: smooth line edge shape class name
SmoothCubicInterpolator - Class in org.vanted.animation.interpolators: Uses the same mathematical equation as a CubicInterpolator but with different constants.
SmoothCubicInterpolator() - Constructor for class org.vanted.animation.interpolators.SmoothCubicInterpolator
SMOOTHLINE - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
SmoothLineEdgeShape - Class in org.graffiti.plugins.views.defaults: A class that represents line shapes that are "smooth" in the sense GML uses it.
SmoothLineEdgeShape() - Constructor for class org.graffiti.plugins.views.defaults.SmoothLineEdgeShape: Default constructor.
SolarMerger - Class in org.vanted.plugins.layout.multilevelframework: Implements the Solar Merger as described by Jürgen Hachul (but without the target edge length calculation.)
SolarMerger() - Constructor for class org.vanted.plugins.layout.multilevelframework.SolarMerger
SolarPlacer - Class in org.vanted.plugins.layout.multilevelframework: Corresponding placer to the SolarMerger.
SolarPlacer() - Constructor for class org.vanted.plugins.layout.multilevelframework.SolarPlacer
solve() - Method in class placement.ActiveSetPlacement
solve() - Method in interface placement.Placement
SOM_ColorReduce - Class in qmwi.kseg.som
SOM_ColorReduce() - Constructor for class qmwi.kseg.som.SOM_ColorReduce
SOManalysis - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som
SOManalysis() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOManalysis
SOMclusterAnalysis - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som
SOMclusterAnalysis() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMclusterAnalysis
SOMclusterAnalysisDoCluster - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som
SOMclusterAnalysisDoCluster() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMclusterAnalysisDoCluster
SOMdataEntry - Interface in qmwi.kseg.som
SOMguiHelper - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som
SOMguiHelper() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMguiHelper
SOMplugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som
SOMplugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMplugin
SOMprintDataset - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som
SOMprintDataset() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som.SOMprintDataset
SOMservice - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.som
sort() - Method in class org.jfree.chart.plot.PieLabelDistributor: Sorts the label records into ascending order by y-value.
sort(Object[]) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.MergeSort
sortByKeys(SortOrder) - Method in class org.jfree.data.DefaultKeyedValues: Sorts the items in the list by key.
sortByValues(SortOrder) - Method in class org.jfree.data.DefaultKeyedValues: Sorts the items in the list by value.
sortDataByDate() - Method in class org.jfree.data.OHLCDataset: Sorts the data into ascending order by date.
SortedCollectionAttribute - Interface in org.graffiti.attributes: Empty interface.
sortGraphElements(GraphElement[]) - Method in class org.graffiti.plugins.views.defaults.GraffitiView
SortIntoCluster - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands: Sorts graph elements into cluster.
SortIntoCluster() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.clusterCommands.SortIntoCluster
sortJTree(DefaultMutableTreeNode, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings.SortJTree
SortJTree - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings
SortJTree() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.plugin_settings.SortJTree
sortLabel - de.ipk_gatersleben.ag_nw.graffiti.NodeSortCommand
sortLabelInverse - de.ipk_gatersleben.ag_nw.graffiti.NodeSortCommand
sortRatio - de.ipk_gatersleben.ag_nw.graffiti.NodeSortCommand
sortRatioInverse - de.ipk_gatersleben.ag_nw.graffiti.NodeSortCommand
sortValues() - Method in class qmwi.kseg.som.diagram.AttributsAll: Insert the method's description here.
SOURCE - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
SOURCE - Static variable in class org.graffiti.plugins.ios.importers.gml.sym
SOURCE_ATTRIBUTE_LITERAL - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLConstants
SourceDockingAttribute - Class in org.graffiti.graphics
SourceDockingAttribute() - Constructor for class org.graffiti.graphics.SourceDockingAttribute
SourceDockingAttribute(String, String) - Constructor for class org.graffiti.graphics.SourceDockingAttribute
sourceInformationProd - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.NodeCombination
sourceInformationReac - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.NodeCombination
sourceInformationSub - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.NodeCombination
SourceSinkShape - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes
SourceSinkShape() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.shapes.SourceSinkShape
SOUTH - Static variable in class org.jfree.chart.Legend: Constant anchor value for legend position SOUTH.
SOUTH - Static variable in class org.jfree.chart.title.Title: Useful constant for the title position.
SOUTH_SOUTHEAST - Static variable in class org.jfree.chart.Legend: Constant anchor value for legend position SOUTH_SOUTHEAST.
SOUTH_SOUTHWEST - Static variable in class org.jfree.chart.Legend: Constant anchor value for legend position SOUTH_SOUTHWEST.
span - Variable in class org.GuiRow
SPATIAL_DIMENSIONS - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
spc(int) - Static method in class org.graffiti.plugin.XMLHelper: Returns a String containing n spaces (or the empty String if useIndentation is set to false).
SPECIAL - org.vanted.scaling.scalers.component.HTMLScaleSupport.Tags
SpecialTableValue - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model
SpecialTableValue(double, Object, boolean, boolean, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.SpecialTableValue
species - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow
SPECIES - de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Condition.ConditionInfo
SPECIES - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathGene
SPECIES - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SPECIES_ANNOTATION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SPECIES_COMPARTMENT_NAME - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SPECIES_CONSTANT - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SPECIES_CONVERSION_FACTOR - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SPECIES_GLYPH_ID - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SPECIES_ID - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SPECIES_META_ID - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SPECIES_NAME - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SPECIES_NON_RDF_ANNOTATION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SPECIES_NOTES - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SPECIES_REFERENCE_ID - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SPECIES_REFERENCE_NAME - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SPECIES_SUBSTANCE_UNITS - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
speciesMap - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBMLSpeciesHelper
SpinnerEditComponent - Class in org.graffiti.plugin.editcomponent: An EditComponent, displaying values in a JSpinner-manner.
SpinnerEditComponent(Displayable) - Constructor for class org.graffiti.plugin.editcomponent.SpinnerEditComponent: Constructor for SpinnerEditComponent.
SplashScreen - Class in org.graffiti.editor: A frame that is displayed while Graffiti is loading.
SplashScreen() - Constructor for class org.graffiti.editor.SplashScreen: Creates a new SplashScreen object.
SplashScreen(String, String) - Constructor for class org.graffiti.editor.SplashScreen
SplashScreenInterface - Interface in org.graffiti.editor
split - Variable in class placement.ActiveSetPlacement
split() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment
split() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface
split(String, String) - Static method in class org.graffiti.util.StringSplitter: Splits String toSplit using delim as delimeter.
split(String, String, int) - Static method in class org.graffiti.util.StringSplitter: Splits String toSplit using delim as delimeter.
splitCells(String) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.TableData
splitInTwo(String, String) - Static method in class org.graffiti.util.StringSplitter: Splits String toSplit using delim as delimeter.
SplitNodeForSingleMappingData - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe
SplitNodeForSingleMappingData() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.SplitNodeForSingleMappingData
splitNodes(Node, int, Graph, boolean, boolean) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.SplitNodeForSingleMappingData
splitOldStyle() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment
SplitResult - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe
SplitResult() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.SplitResult
splitSafe(String, String) - Static method in class org.StringManipulationTools
splitString(String, String) - Method in class qmwi.kseg.som.diagram.Aus: Insert the method's description here.
splitUrlSeparator - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.workflow.RSSFeedManager
SPREADSHEET_DESCRIPTION - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.OpenExcelFileDialogService
SpringEmbedderAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.springembedder_1
SpringEmbedderAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.springembedder_1.SpringEmbedderAlgorithm
SpringEmbedderPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.springembedder_1
SpringEmbedderPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.springembedder_1.SpringEmbedderPlugin: DOCTODO: Include method header
springName - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder
springName - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.PatternSpringembedder3d
SqlMeasurementData - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe
SqlMeasurementData(int, int, int, double, int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe.SqlMeasurementData
SqlSampleAverageData - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe
SqlSampleAverageData(int, int, Integer, Double, Double, Double, Double) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe.SqlSampleAverageData
SqlSampleIdTimeUnitInfo - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe
SqlSampleIdTimeUnitInfo(int, int, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe.SqlSampleIdTimeUnitInfo
SQUARESPLINE - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
SQUARESPLINE_CLASSNAME - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants: quadratic spline edge shape class name
SrcTargetEditor - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.relation_gui
SrcTargetEditor(String, Relation, List<Entry>, HashMap<Entry, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.relation_gui.SrcTargetEditor
STACKED - Static variable in class org.jfree.chart.renderer.RangeType: The overall range is determined by looking at the sums of the values within each category.
StackedAreaChartDemo - Class in org.jfree.chart.demo: A simple demonstration application showing how to create a stacked area chart using data from a CategoryDataset.
StackedAreaChartDemo(String) - Constructor for class org.jfree.chart.demo.StackedAreaChartDemo: Creates a new demo.
StackedAreaRenderer - Class in org.jfree.chart.renderer: A renderer that draws stacked area charts for a CategoryPlot.
StackedAreaRenderer() - Constructor for class org.jfree.chart.renderer.StackedAreaRenderer: Creates a new renderer.
StackedAreaXYRenderer - Class in org.jfree.chart.renderer: Deprecated.
Renamed StackedXYAreaRenderer.
StackedAreaXYRenderer() - Constructor for class org.jfree.chart.renderer.StackedAreaXYRenderer: Deprecated.
StackedBarChart3DDemo - Class in org.jfree.chart.demo: A simple demonstration application showing how to create a stacked 3D bar chart using data from a CategoryDataset.
StackedBarChart3DDemo(String) - Constructor for class org.jfree.chart.demo.StackedBarChart3DDemo: Creates a new demo.
StackedBarChartDemo1 - Class in org.jfree.chart.demo: A simple demonstration application showing how to create a stacked bar chart using data from a CategoryDataset.
StackedBarChartDemo1(String) - Constructor for class org.jfree.chart.demo.StackedBarChartDemo1: Creates a new demo.
StackedBarChartDemo2 - Class in org.jfree.chart.demo: A simple demonstration application showing how to create a stacked bar chart using data from a CategoryDataset.
StackedBarChartDemo2(String) - Constructor for class org.jfree.chart.demo.StackedBarChartDemo2: Creates a new demo.
StackedBarChartDemo3 - Class in org.jfree.chart.demo: A simple demonstration application showing how to create a stacked bar chart using data from a CategoryDataset.
StackedBarChartDemo3(String) - Constructor for class org.jfree.chart.demo.StackedBarChartDemo3: Creates a new demo.
StackedBarChartDemo4 - Class in org.jfree.chart.demo: A simple demonstration application showing how to create a stacked bar chart using data from a CategoryDataset.
StackedBarChartDemo4(String) - Constructor for class org.jfree.chart.demo.StackedBarChartDemo4: Creates a new demo.
StackedBarRenderer - Class in org.jfree.chart.renderer: A stacked bar renderer for use with the CategoryPlot class.
StackedBarRenderer() - Constructor for class org.jfree.chart.renderer.StackedBarRenderer: Creates a new renderer with no tool tip generator and no URL generator.
StackedBarRenderer3D - Class in org.jfree.chart.renderer: Renders stacked bars with 3D-effect, for use with the CategoryPlot class.
StackedBarRenderer3D() - Constructor for class org.jfree.chart.renderer.StackedBarRenderer3D: Creates a new renderer with no tool tip generator and no URL generator.
StackedBarRenderer3D(double, double) - Constructor for class org.jfree.chart.renderer.StackedBarRenderer3D: Constructs a new renderer with the specified '3D effect'.
StackedXYAreaChartDemo - Class in org.jfree.chart.demo: A simple demonstration application showing how to create a stacked XY area chart.
StackedXYAreaChartDemo(String) - Constructor for class org.jfree.chart.demo.StackedXYAreaChartDemo: Creates a new demo.
StackedXYAreaChartDemo2 - Class in org.jfree.chart.demo: This demo shows the creation of a stacked XY area chart.
StackedXYAreaChartDemo2(String) - Constructor for class org.jfree.chart.demo.StackedXYAreaChartDemo2: Creates a new demo.
StackedXYAreaRenderer - Class in org.jfree.chart.renderer: A stacked area renderer for the XYPlot class.
StackedXYAreaRenderer() - Constructor for class org.jfree.chart.renderer.StackedXYAreaRenderer: Creates a new renderer.
StackedXYAreaRenderer(int) - Constructor for class org.jfree.chart.renderer.StackedXYAreaRenderer: Constructs a new renderer.
StackedXYAreaRenderer(int, XYToolTipGenerator, XYURLGenerator) - Constructor for class org.jfree.chart.renderer.StackedXYAreaRenderer: Constructs a new renderer.
StackedXYAreaRenderer2 - Class in org.jfree.chart.renderer: A stacked area renderer for the XYPlot class.
StackedXYAreaRenderer2() - Constructor for class org.jfree.chart.renderer.StackedXYAreaRenderer2: Creates a new renderer.
StackedXYAreaRenderer2(XYToolTipGenerator, XYURLGenerator) - Constructor for class org.jfree.chart.renderer.StackedXYAreaRenderer2: Constructs a new renderer.
StackedXYBarRenderer - Class in org.jfree.chart.renderer: A bar renderer that displays the series items stacked.
StackedXYBarRenderer() - Constructor for class org.jfree.chart.renderer.StackedXYBarRenderer: creates a new renderer.
StackedXYBarRenderer(double) - Constructor for class org.jfree.chart.renderer.StackedXYBarRenderer: creates a new renderer.
STAGGER_WIDTH - Static variable in class org.jfree.chart.renderer.CategoryStepRenderer: The stagger width.
STANDARD - Static variable in class org.jfree.chart.axis.CategoryLabelPositions: STANDARD category label positions.
STANDARD - Static variable in class org.jfree.chart.LegendRenderingOrder: In order.
STANDARD - Static variable in class org.jfree.chart.renderer.RangeType: The overall range is determined by looking at the individual values.
STANDARD_SAVE_FORMAT - Static variable in class org.graffiti.managers.DefaultIOManager
STANDARD_VALUE - Static variable in class org.vanted.scaling.DPIHelper: Standard value, when no scaling is to be performed.
standardArrow - Static variable in class org.graffiti.plugins.editcomponents.defaults.EdgeArrowShapeEditComponent
standardArrowLeft - Static variable in class org.graffiti.plugins.editcomponents.defaults.EdgeArrowShapeEditComponent
standardArrowRight - Static variable in class org.graffiti.plugins.editcomponents.defaults.EdgeArrowShapeEditComponent
StandardArrowShape - Class in org.graffiti.plugins.views.defaults: DOCUMENT ME!
StandardArrowShape() - Constructor for class org.graffiti.plugins.views.defaults.StandardArrowShape: Constructs a new arrow.
StandardArrowShape(float) - Constructor for class org.graffiti.plugins.views.defaults.StandardArrowShape
StandardArrowShapeLeft - Class in org.graffiti.plugins.views.defaults: DOCUMENT ME!
StandardArrowShapeLeft() - Constructor for class org.graffiti.plugins.views.defaults.StandardArrowShapeLeft: Constructs a new arrow.
StandardArrowShapeLeft(float) - Constructor for class org.graffiti.plugins.views.defaults.StandardArrowShapeLeft
StandardArrowShapeRight - Class in org.graffiti.plugins.views.defaults: DOCUMENT ME!
StandardArrowShapeRight() - Constructor for class org.graffiti.plugins.views.defaults.StandardArrowShapeRight: Constructs a new arrow.
StandardArrowShapeRight(float) - Constructor for class org.graffiti.plugins.views.defaults.StandardArrowShapeRight
StandardAttributeComponents - Class in org.graffiti.plugins.attributecomponents.simplelabel: This plugin contains the standard attribute-attributeComponent mappings.
StandardAttributeComponents() - Constructor for class org.graffiti.plugins.attributecomponents.simplelabel.StandardAttributeComponents: Creates a new StandardAttributeComponents object.
StandardCategoryLabelGenerator - Class in org.jfree.chart.labels: A standard label generator that can be used with a CategoryItemRenderer.
StandardCategoryLabelGenerator() - Constructor for class org.jfree.chart.labels.StandardCategoryLabelGenerator: Creates a new generator with a default number formatter.
StandardCategoryLabelGenerator(String, DateFormat) - Constructor for class org.jfree.chart.labels.StandardCategoryLabelGenerator: Creates a new generator with the specified date formatter.
StandardCategoryLabelGenerator(String, NumberFormat) - Constructor for class org.jfree.chart.labels.StandardCategoryLabelGenerator: Creates a new generator with the specified number formatter.
StandardCategoryToolTipGenerator - Class in org.jfree.chart.labels: A standard tool tip generator that can be used with a CategoryItemRenderer.
StandardCategoryToolTipGenerator() - Constructor for class org.jfree.chart.labels.StandardCategoryToolTipGenerator: Creates a new generator with a default number formatter.
StandardCategoryToolTipGenerator(String, DateFormat) - Constructor for class org.jfree.chart.labels.StandardCategoryToolTipGenerator: Creates a new generator with the specified date formatter.
StandardCategoryToolTipGenerator(String, NumberFormat) - Constructor for class org.jfree.chart.labels.StandardCategoryToolTipGenerator: Creates a new generator with the specified number formatter.
StandardCategoryURLGenerator - Class in org.jfree.chart.urls: A URL generator that can be assigned to a CategoryItemRenderer.
StandardCategoryURLGenerator() - Constructor for class org.jfree.chart.urls.StandardCategoryURLGenerator: Creates a new generator with default settings.
StandardCategoryURLGenerator(String) - Constructor for class org.jfree.chart.urls.StandardCategoryURLGenerator: Constructor that overrides default prefix to the URL.
StandardCategoryURLGenerator(String, String, String) - Constructor for class org.jfree.chart.urls.StandardCategoryURLGenerator: Constructor that overrides all the defaults.
StandardContourToolTipGenerator - Class in org.jfree.chart.labels: A standard tooltip generator for plots that use data from an ContourDataset.
StandardContourToolTipGenerator() - Constructor for class org.jfree.chart.labels.StandardContourToolTipGenerator
StandardEntityCollection - Class in org.jfree.chart.entity: A standard implementation of the EntityCollection interface.
StandardEntityCollection() - Constructor for class org.jfree.chart.entity.StandardEntityCollection: Constructs a new entity collection (initially empty).
StandardLegend - Class in org.jfree.chart: A chart legend shows the names and visual representations of the series that are plotted in a chart.
StandardLegend() - Constructor for class org.jfree.chart.StandardLegend: Constructs a new legend with default settings.
StandardLegend(JFreeChart) - Constructor for class org.jfree.chart.StandardLegend: Deprecated.
use the default constructor instead and let JFreeChart manage the chart reference
StandardLegendItemLayout - Class in org.jfree.chart: A class for arranging legend items.
StandardLegendItemLayout(int, double) - Constructor for class org.jfree.chart.StandardLegendItemLayout: Constructs a new layout class for legend items.
StandardLooper - Class in org.vanted.animation.loopers
StandardLooper() - Constructor for class org.vanted.animation.loopers.StandardLooper
StandardPieItemLabelGenerator - Class in org.jfree.chart.labels: A standard item label generator for plots that use data from a PieDataset.
StandardPieItemLabelGenerator() - Constructor for class org.jfree.chart.labels.StandardPieItemLabelGenerator: Creates an item label generator using default number formatters.
StandardPieItemLabelGenerator(String) - Constructor for class org.jfree.chart.labels.StandardPieItemLabelGenerator: Creates an item label generator.
StandardPieItemLabelGenerator(String, NumberFormat, NumberFormat) - Constructor for class org.jfree.chart.labels.StandardPieItemLabelGenerator: Creates an item label generator using the specified number formatters.
StandardPieURLGenerator - Class in org.jfree.chart.urls: A URL generator for pie charts.
StandardPieURLGenerator() - Constructor for class org.jfree.chart.urls.StandardPieURLGenerator: Default constructor.
StandardPieURLGenerator(String) - Constructor for class org.jfree.chart.urls.StandardPieURLGenerator: Creates a new generator.
StandardPieURLGenerator(String, String) - Constructor for class org.jfree.chart.urls.StandardPieURLGenerator: Creates a new generator.
StandardPieURLGenerator(String, String, String) - Constructor for class org.jfree.chart.urls.StandardPieURLGenerator: Creates a new generator.
StandardTickUnitSource - Class in org.jfree.chart.axis: A source that can used by the NumberAxis class to obtain a suitable TickUnit.
StandardTickUnitSource() - Constructor for class org.jfree.chart.axis.StandardTickUnitSource
StandardTools - Class in org.graffiti.plugins.modes.defaults: This plugin contains the standard editing tools.
StandardTools() - Constructor for class org.graffiti.plugins.modes.defaults.StandardTools: Creates a new StandardTools object.
StandardToolTipTagFragmentGenerator - Class in org.jfree.chart.imagemap: Generates tooltips using the HTML title attribute for image map area tags.
StandardToolTipTagFragmentGenerator() - Constructor for class org.jfree.chart.imagemap.StandardToolTipTagFragmentGenerator
StandardURLTagFragmentGenerator - Class in org.jfree.chart.imagemap: Generates URLs using the HTML href attribute for image map area tags.
StandardURLTagFragmentGenerator() - Constructor for class org.jfree.chart.imagemap.StandardURLTagFragmentGenerator
StandardValueEditComponent - Class in org.graffiti.plugin.editcomponent: DOCUMENT ME!
StandardValueEditComponent(Displayable) - Constructor for class org.graffiti.plugin.editcomponent.StandardValueEditComponent: Standard constructor.
StandardXYItemRenderer - Class in org.jfree.chart.renderer: Standard item renderer for an XYPlot.
StandardXYItemRenderer() - Constructor for class org.jfree.chart.renderer.StandardXYItemRenderer: Constructs a new renderer.
StandardXYItemRenderer(int) - Constructor for class org.jfree.chart.renderer.StandardXYItemRenderer: Constructs a new renderer.
StandardXYItemRenderer(int, XYToolTipGenerator) - Constructor for class org.jfree.chart.renderer.StandardXYItemRenderer: Constructs a new renderer.
StandardXYItemRenderer(int, XYToolTipGenerator, XYURLGenerator) - Constructor for class org.jfree.chart.renderer.StandardXYItemRenderer: Constructs a new renderer.
StandardXYLabelGenerator - Class in org.jfree.chart.labels: A standard label generator for plots that use data from an XYDataset.
StandardXYLabelGenerator() - Constructor for class org.jfree.chart.labels.StandardXYLabelGenerator: Creates an item label generator using default number formatters.
StandardXYLabelGenerator(String, DateFormat, DateFormat) - Constructor for class org.jfree.chart.labels.StandardXYLabelGenerator: Creates a label generator using the specified date formatters.
StandardXYLabelGenerator(String, DateFormat, NumberFormat) - Constructor for class org.jfree.chart.labels.StandardXYLabelGenerator: Creates an item label generator using the specified number formatters.
StandardXYLabelGenerator(String, NumberFormat, NumberFormat) - Constructor for class org.jfree.chart.labels.StandardXYLabelGenerator: Creates an item label generator using the specified number formatters.
StandardXYToolTipGenerator - Class in org.jfree.chart.labels: A standard tool tip generator for use with an XYItemRenderer.
StandardXYToolTipGenerator() - Constructor for class org.jfree.chart.labels.StandardXYToolTipGenerator: Creates a tool tip generator using default number formatters.
StandardXYToolTipGenerator(String, DateFormat, DateFormat) - Constructor for class org.jfree.chart.labels.StandardXYToolTipGenerator: Creates a tool tip generator using the specified date formatters.
StandardXYToolTipGenerator(String, DateFormat, NumberFormat) - Constructor for class org.jfree.chart.labels.StandardXYToolTipGenerator: Creates a tool tip generator using the specified number formatters.
StandardXYToolTipGenerator(String, NumberFormat, NumberFormat) - Constructor for class org.jfree.chart.labels.StandardXYToolTipGenerator: Creates a tool tip generator using the specified number formatters.
StandardXYURLGenerator - Class in org.jfree.chart.urls: A URL generator.
StandardXYURLGenerator() - Constructor for class org.jfree.chart.urls.StandardXYURLGenerator: Blank constructor
StandardXYURLGenerator(String) - Constructor for class org.jfree.chart.urls.StandardXYURLGenerator: Constructor that overrides default prefix to the URL.
StandardXYURLGenerator(String, String, String) - Constructor for class org.jfree.chart.urls.StandardXYURLGenerator: Constructor that overrides all the defaults
StandardXYZToolTipGenerator - Class in org.jfree.chart.labels: A standard item label generator for use with XYZDataset data.
StandardXYZToolTipGenerator() - Constructor for class org.jfree.chart.labels.StandardXYZToolTipGenerator: Creates a new tool tip generator using default number formatters for the x, y and z-values.
StandardXYZToolTipGenerator(String, DateFormat, DateFormat, DateFormat) - Constructor for class org.jfree.chart.labels.StandardXYZToolTipGenerator: Constructs a new tool tip generator using the specified date formatters.
StandardXYZToolTipGenerator(String, NumberFormat, NumberFormat, NumberFormat) - Constructor for class org.jfree.chart.labels.StandardXYZToolTipGenerator: Constructs a new tool tip generator using the specified number formatters.
StandardXYZURLGenerator - Class in org.jfree.chart.urls: A URL generator.
StandardXYZURLGenerator() - Constructor for class org.jfree.chart.urls.StandardXYZURLGenerator
Star - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview
Star() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.Star
start() - Method in class org.vanted.animation.Animator: Starts the animator
START - Static variable in class org.jfree.chart.axis.CategoryAnchor: Start of period.
START - Static variable in class org.jfree.chart.axis.DateTickMarkPosition: Start of period.
START - Static variable in class org.jfree.data.time.DynamicTimeSeriesCollection: Useful constant for controlling the x-value returned for a time period.
START - Static variable in class org.jfree.data.time.TimePeriodAnchor: Start of period.
START - Static variable in class org.jfree.data.time.TimePeriodValuesCollection: Deprecated.
Replaced by TimePeriodAnchor.START.
START - Static variable in class org.jfree.data.time.TimeSeriesCollection: Useful constant for controlling the x-value returned for a time period.
start_production() - Method in class org.graffiti.plugins.ios.importers.gml.parser: Indicates start production.
start_state() - Method in class org.graffiti.plugins.ios.importers.gml.parser: Indicates start state.
startAttElement(Attributes) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLContentHandler: Dynamically invoked by delegator handler.
StartBenchmarks - Class in org.vanted.plugins.layout.multilevelframework: Run some benchmarks for the MLF in VANTED.
StartBenchmarks() - Constructor for class org.vanted.plugins.layout.multilevelframework.StartBenchmarks
startCenterElement(Attributes) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLContentHandler: Dynamically invoked by delegator handler.
startDocument() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLDelegatorHandler: Handle start document event.
startDocument() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLHandler
startEdgeElement(Attributes) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLContentHandler: Dynamically invoked by delegator handler.
startElement(String, String, String, Attributes) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathXMLparser
startElement(String, String, String, Attributes) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xlsx.SheetHandler
startElement(String, String, String, Attributes) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLDelegatorHandler: Handle start tag event.
startElement(String, String, String, Attributes) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLHandler
startElement(String, String, String, Attributes) - Method in class org.graffiti.plugins.ios.importers.graphml.parser.GraphMLFilter: Filter a start element event.
startElement(String, String, String, Attributes) - Method in class org.jfree.data.xml.CategoryDatasetHandler: The start of an element.
startElement(String, String, String, Attributes) - Method in class org.jfree.data.xml.CategorySeriesHandler: The start of an element.
startElement(String, String, String, Attributes) - Method in class org.jfree.data.xml.ItemHandler: The start of an element.
startElement(String, String, String, Attributes) - Method in class org.jfree.data.xml.KeyHandler: The start of an element.
startElement(String, String, String, Attributes) - Method in class org.jfree.data.xml.PieDatasetHandler: Starts an element.
startElement(String, String, String, Attributes) - Method in class org.jfree.data.xml.ValueHandler: The start of an element.
startGraphElement(Attributes) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLContentHandler: Dynamically invoked by delegator handler.
startGraphicsElement(Attributes) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLContentHandler: Dynamically invoked by delegator handler.
StartLayoutAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.startlayout
StartLayoutAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.startlayout.StartLayoutAlgorithm
StartLayoutPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.startlayout
StartLayoutPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.startlayout.StartLayoutPlugin
startLineElement(Attributes) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLContentHandler
startNodeElement(Attributes) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLContentHandler: Dynamically invoked by delegator handler.
startPointElement(Attributes) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLContentHandler
startswith - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.invert_selection.SearchOperation
startTitle - Static variable in class org.graffiti.editor.GraffitiInternalFrame
startVanted(String[], String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.Main
startVantedExt(String[], String[]) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.webstart.Main
StartVantedWithAddon - Class in org.vanted.plugins.layout.multilevelframework: Starts VANTED with the MLF add-on.
StartVantedWithAddon() - Constructor for class org.vanted.plugins.layout.multilevelframework.StartVantedWithAddon
StartVantedWithStressMinAddon - Class in org.vanted.plugins.layout.stressminimization: Helper method for starting vanted with the stress minimization addon.
StartVantedWithStressMinAddon() - Constructor for class org.vanted.plugins.layout.stressminimization.StartVantedWithStressMinAddon
startWork(Object) - Method in class de.ipk_gatersleben.ag_nw.graffiti.services.task.BackgroundTaskHelper: Opens a progress window and starts the workTask that was provided in the constructor.
state - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.SubtypeName
STATE_IDLE - Static variable in class org.vanted.scaling.Toolbox
STATE_ON_SLIDER - Static variable in class org.vanted.scaling.Toolbox
STATE_ON_START - Static variable in class org.vanted.scaling.Toolbox
STATE_RESCALED - Static variable in class org.vanted.scaling.Toolbox
STATE_UNSCALED - Static variable in class org.vanted.scaling.Toolbox
stateChange - de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.SubtypeName
stateChanged(ChangeEvent) - Method in class org.jfree.chart.demo.PanScrollZoomDemo: Handles a ChangeEvent (in this case, coming from the scrollbar).
stateChanged(ChangeEvent) - Method in class org.vanted.plugins.layout.stressminimization.parameters.LandmarkSliderComponent
stateChanged(ChangeEvent) - Method in class org.vanted.scaling.ScalingSlider
stateChanged(ChangeEvent) - Method in class org.vanted.scaling.vanted.GraphScaler
StatefulAccumulator<T,O> - Class in org.vanted.indexednodes.accumulators: An object that holds an accumulating value of type T and is able to accept parameters of type O and (potentially) aggregate them into a value of type T.
StatefulAccumulator(T) - Constructor for class org.vanted.indexednodes.accumulators.StatefulAccumulator
STATISTIC_FUNCTIONS - org.FeatureSet
StatisticalBarChartDemo - Class in org.jfree.chart.demo: Demonstration of the statistical bar graph.
StatisticalBarChartDemo(String) - Constructor for class org.jfree.chart.demo.StatisticalBarChartDemo: Creates a new demo.
StatisticalBarRenderer - Class in org.jfree.chart.renderer: A renderer that handles the drawing a bar plot where each bar has a mean value and a standard deviation line.
StatisticalBarRenderer() - Constructor for class org.jfree.chart.renderer.StatisticalBarRenderer: Default constructor.
StatisticalCategoryDataset - Interface in org.jfree.data.statistics: A category dataset that defines a median and standard deviation value for each item.
Statistics - Class in org.jfree.data.statistics: A utility class that provides some simple statistical functions.
Statistics() - Constructor for class org.jfree.data.statistics.Statistics
STATISTICS - org.graffiti.plugin.algorithm.Category
StatisticTable - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics
StatisticTable() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.statistics.StatisticTable
status - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.biomodels.RestApiBiomodels
status(String, Date, Date) - Method in class org.jfree.chart.demo.Performance2: Outputs the current status to the console.
StatusBar - Class in org.graffiti.editor: Represents a status line ui component, which can display info and error messages.
StatusBar(StringBundle) - Constructor for class org.graffiti.editor.StatusBar: Constructs a new status bar.
statusDrawInProgress() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.IPKGraffitiView
statusDrawInProgress() - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.PaintStatusSupport
STATUSERROR - org.vanted.plugins.layout.stressminimization.BackgroundStatus
statuspane - Variable in class qmwi.kseg.som.DataSet
stddev_AA - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.AttributeCalculation
stdDevLineWidth - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ChartOptions
stdDevTopWidth - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.ipk_graffitiview.chartDrawComponent.ChartOptions
stillInputAvailable() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe.StringScanner
STOICHIOMETRY - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
StoichiometryWriter - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility: writes on one edge a Stochiometry and reads it again
StoichiometryWriter - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility: writes on one edge a Stochiometry and reads it again
StoichiometryWriter() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.biopax.lvl3utility.StoichiometryWriter
StoichiometryWriter() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.biopax.lvl2utility.StoichiometryWriter
stop() - Method in interface org.graffiti.plugin.GenericPlugin: Stops a running plugin.
stop() - Method in class org.graffiti.plugin.GenericPluginAdapter: Stops a running plugin.
stop() - Method in class org.vanted.animation.Animator: Stops the animator.
stop() - Method in class org.vanted.plugins.layout.stressminimization.BackgroundAlgorithm: Stops the execution of the algorithm.
stop() - Method in class org.vanted.plugins.layout.stressminimization.StressMinimizationLayout
stopCellEditing() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.xml_data_tree_table_model.AbstractCellEditor
stopp - Variable in class qmwi.kseg.som.DataSet
storedLinks - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.PngJpegAlgorithm
storeOrSetNodePosition(boolean, int, Node, double, double) - Method in class org.graffiti.plugin.algorithm.AbstractThreadSaveLayoutAlgorithm: Stores a node position (from the layout thread) or sets the node position of a node to a stored position (from the FrameMain thread).
storePreferences() - Static method in class org.graffiti.managers.PreferenceManager: Stores the preferences in 'settings.xml' in the Vanted program directory.
storeView(View) - Method in interface org.graffiti.editor.ConfigureViewAction
STRAIGHTLINE - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants
STRAIGHTLINE_CLASSNAME - Static variable in interface org.graffiti.graphics.GraphicAttributeConstants: simple straight line edge shape class name
StraightLineEdgeShape - Class in org.graffiti.plugins.views.defaults: Concrete class representing an edge as one straight line.
StraightLineEdgeShape() - Constructor for class org.graffiti.plugins.views.defaults.StraightLineEdgeShape
StressMinimizationImplementation - Class in org.vanted.plugins.layout.stressminimization
StressMinimizationImplementation(IndexedNodeSet, StressMinimizationLayout, boolean, int, int, double, double, double, double, int) - Constructor for class org.vanted.plugins.layout.stressminimization.StressMinimizationImplementation: Creates a new StressMinimizationImplementation working on the given list of nodes and using callingLayout for pausing and stopping behavior
StressMinimizationLayout - Class in org.vanted.plugins.layout.stressminimization: Layout algorithm performing a stress minimization layout process.
StressMinimizationLayout() - Constructor for class org.vanted.plugins.layout.stressminimization.StressMinimizationLayout: Creates a new StressMinimizationLayout instance.
StressMinimizationPlugin - Class in org.vanted.plugins.layout.stressminimization: Since 2.8.0 the Stress Minimization add-on is integrated into the core of Vanted as Vanted plug-in.
StressMinimizationPlugin() - Constructor for class org.vanted.plugins.layout.stressminimization.StressMinimizationPlugin
StressMinParamModel - Class in org.vanted.plugins.layout.stressminimization: This class represents the GUI and at the same time the "model" of the algorithm settings/options/parameters.
StressMinParamModel() - Constructor for class org.vanted.plugins.layout.stressminimization.StressMinParamModel
StressMinParamModel.InitialLayoutOption - Enum in org.vanted.plugins.layout.stressminimization
StressMinParamModel.MethodAlphaGroup - Class in org.vanted.plugins.layout.stressminimization
StressMinParamModel.MethodEdgeScaleGroup - Class in org.vanted.plugins.layout.stressminimization
StressMinParamModel.MethodOption - Enum in org.vanted.plugins.layout.stressminimization
StressMinParamModel.MethodRadioGroup - Class in org.vanted.plugins.layout.stressminimization
StressMinParamModel.PreprocessingGroup - Class in org.vanted.plugins.layout.stressminimization
StressMinParamModel.RadiosOFEnum<E extends Enum<E>> - Class in org.vanted.plugins.layout.stressminimization
StressMinParamModel.TerminationCheckboxGroup - Class in org.vanted.plugins.layout.stressminimization
StressMinParamModel.TerminationStressChangeGroup - Class in org.vanted.plugins.layout.stressminimization
string - Variable in class qmwi.kseg.som.diagram.Aus
STRING - Static variable in class org.graffiti.plugins.ios.importers.gml.sym
StringAttribute - Class in org.graffiti.attributes: Contains a String.
StringAttribute() - Constructor for class org.graffiti.attributes.StringAttribute
StringAttribute(String, String) - Constructor for class org.graffiti.attributes.StringAttribute: Constructs a new instance of a StringAttribute with the given value.
StringBundle - Class in org.graffiti.core: The localized resource for the the labels used in the whole system as for label, buttons etc.
StringEditComponent - Class in org.graffiti.plugins.editcomponents.defaults: StringEditComponent provides an edit component for editing strings.
StringEditComponent(Displayable) - Constructor for class org.graffiti.plugins.editcomponents.defaults.StringEditComponent: Constructs a new StringEditComponent.
StringManipulationTools - Class in org
StringManipulationTools() - Constructor for class org.StringManipulationTools
StringParameter - Class in org.graffiti.plugin.parameter: Parameter that contains an Integer value.
StringParameter(String, String, String) - Constructor for class org.graffiti.plugin.parameter.StringParameter: Constructs a new integer parameter.
stringReplace(String, String, String) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.MyGraphicsTools: Replace occurrences of a substring.
stringReplace(String, String, String) - Static method in class org.jfree.chart.axis.NumberAxis: Replace occurrences of a substring.
stringReplace(String, String, String) - Static method in class org.jfree.chart.axis.StandardTickUnitSource: Replace occurrences of a substring.
stringReplace(String, String, String) - Static method in class org.jfree.chart.axis.TickUnits: Replace occurrences of a substring.
stringReplace(String, String, String) - Static method in class org.jfree.chart.labels.StandardContourToolTipGenerator: Replace occurrences of a substring.
stringReplace(String, String, String) - Static method in class org.StringManipulationTools: Replace occurrences of a substring.
StringScanner - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe
StringScanner(String, String, String, String) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe.StringScanner
StringSplitter - Class in org.graffiti.util: Provides a method to split a String into several Strings according to a certain String.
StringSplitter() - Constructor for class org.graffiti.util.StringSplitter
StringTimePoint - Class in org.vanted.animation.data
StringTimePoint(double, String) - Constructor for class org.vanted.animation.data.StringTimePoint
SUB_UNIT - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SubCategoryAxis - Class in org.jfree.chart.axis: A specialised category axis that can display sub-categories.
SubCategoryAxis(String) - Constructor for class org.jfree.chart.axis.SubCategoryAxis: Creates a new axis.
SubComponentNameCheckBox - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.relation_gui
SubComponentNameCheckBox(Relation, SubtypeName, JLabel) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.relation_gui.SubComponentNameCheckBox
SubComponentTypesEditor - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.relation_gui
SubComponentTypesEditor(Relation, JLabel) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.relation_gui.SubComponentTypesEditor
SUBFAMILY - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathMolecule
SUBFAMILY - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathPathway
subgraphIndex - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.layouters.pattern_springembedder.NodeCacheEntry
subList(int, int) - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Experiment
subList(int, int) - Method in interface de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.ExperimentInterface
SUBPLOT_COUNT - Static variable in class org.jfree.chart.demo.DynamicDataDemo3: The number of subplots.
SubSeriesDataset - Class in org.jfree.data: This class will create a dataset with one or more series from another SeriesDataset.
SubSeriesDataset(SeriesDataset, int) - Constructor for class org.jfree.data.SubSeriesDataset: Creates a SubSeriesDataset using one series from parent.
SubSeriesDataset(SeriesDataset, int[]) - Constructor for class org.jfree.data.SubSeriesDataset: Creates a SubSeriesDataset using one or more series from parent.
Substance - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper
Substance() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
Substance(Map<?, ?>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper.Substance
SUBSTANCE_UNITS - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SubstanceColumnInformation - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe
SubstanceColumnInformation() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.SubstanceColumnInformation
substanceCount - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.helper_classes.MapResult
substanceId - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.database.dbe.SqlMeasurementData
SubstanceInterface - Interface in de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.editing_tools.script_helper
substanceName - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.dbe.algorithms.DataSetRow
SubstanceRatioCalculationAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview
SubstanceRatioCalculationAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.algorithms.ratioview.SubstanceRatioCalculationAlgorithm
SubtabHostTab - Class in org.graffiti.plugin.inspector
SubtabHostTab(String) - Constructor for class org.graffiti.plugin.inspector.SubtabHostTab
SubtabHostTab(String, Collection<InspectorTab>) - Constructor for class org.graffiti.plugin.inspector.SubtabHostTab
SubtabHostTab(String, InspectorTab[]) - Constructor for class org.graffiti.plugin.inspector.SubtabHostTab
Subtype - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml
Subtype(SubtypeName, IdRef) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.Subtype
SubtypeCompoundEditor - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.relation_gui
SubtypeCompoundEditor(String, Relation, List<Entry>, HashMap<Entry, Node>) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.kegg.kegg_type.relation_gui.SubtypeCompoundEditor
SubtypeName - Enum in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes
SubtypeValue - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes
SubtypeValue(IdRef) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.SubtypeValue
SubtypeValue(SubtypeName) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.kgml.datatypes.SubtypeValue
sum_AA - de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.add_attributes.AttributeCalculation
SUN_TO_PLANETS_KEY - Static variable in class org.vanted.plugins.layout.multilevelframework.SolarMerger
SUNS_KEY - Static variable in class org.vanted.plugins.layout.multilevelframework.SolarMerger
SUPERFAMILY - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathMolecule
SUPERFAMILY - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathPathway
supportedMagicFieldStrings - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.gui.layout_control.dbe.ExperimentLoader
SupportsHollowDrawing - Interface in org.graffiti.plugins.views.defaults
supportsModifyCommand() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.LoadGraphFileAttributeAction
supportsModifyCommand() - Method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.LoadURLattributeAction
supportsModifyCommand() - Method in interface org.graffiti.plugin.actions.URLattributeAction
supportsModifyCommand(URLAttribute) - Static method in class de.ipk_gatersleben.ag_nw.graffiti.plugins.editcomponents.url_attribute.URLAttributeEditor
SupportsWriterOutput - Interface in org.graffiti.plugin.io
SuppressSaveActionsView - Interface in org.graffiti.plugin.view
SurveyResultsDemo - Class in org.jfree.chart.demo: A horizontal bar chart showing survey results.
SurveyResultsDemo(String) - Constructor for class org.jfree.chart.demo.SurveyResultsDemo: Creates a new demo.
SurveyResultsDemo2 - Class in org.jfree.chart.demo: A vertical bar chart.
SurveyResultsDemo2(String) - Constructor for class org.jfree.chart.demo.SurveyResultsDemo2: Creates a new demo.
SurveyResultsDemo3 - Class in org.jfree.chart.demo: A chart showing...
SurveyResultsDemo3(String) - Constructor for class org.jfree.chart.demo.SurveyResultsDemo3: Creates a new demo.
surviveFocusChange() - Method in class org.graffiti.editor.actions.AddAttributeAction: Returns true, if this action should survive a focus change in the editor.
surviveFocusChange() - Method in class org.graffiti.editor.actions.ChangeAttributeValueAction: Returns true, if this action should survive a focus change.
surviveFocusChange() - Method in class org.graffiti.editor.actions.DeleteAttributeAction: Returns true, if this action should survive a focus change in the editor.
surviveFocusChange() - Method in class org.graffiti.plugin.actions.SelectionAction: Returns true, if this action should survive a focus change.
suspendEncoding() - Method in class org.graffiti.plugins.ios.exporters.graphml.Base64.OutputStream: Suspends encoding of the stream.
suspendEncoding() - Method in class org.graffiti.plugins.ios.importers.graphml.parser.Base64.OutputStream: Suspends encoding of the stream.
SVGAlgorithm - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter: The print algorithm.
SVGAlgorithm() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SVGAlgorithm: Empty contructor.
SVGAlgorithm(int) - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SVGAlgorithm
SVGPlugin - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter: This plugin provides a print feature.
SVGPlugin() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.svg_exporter.SVGPlugin: Empty constructor.
SwingLooper - Class in org.vanted.animation.loopers: Reverses the animation after it goes forward.
SwingLooper() - Constructor for class org.vanted.animation.loopers.SwingLooper
switchFullscreenViewMode(boolean) - Method in interface org.graffiti.plugin.view.CustomFullscreenView
SwitchSelectionsPlugin - Class in org.graffiti.plugins.guis.switchselections: Provides a spring embedder algorithm a la KK.
SwitchSelectionsPlugin() - Constructor for class org.graffiti.plugins.guis.switchselections.SwitchSelectionsPlugin: Creates a new TrivialGridRestrictedPlugin object.
switchVisibilityOfChildElements(Collection<Node>) - Static method in class org.AttributeHelper
sym - Class in org.graffiti.plugins.ios.importers.gml: CUP generated class containing symbol constants.
sym() - Constructor for class org.graffiti.plugins.ios.importers.gml.sym
SYMBOL - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.sbml.SBML_Constants
SymbolicAxis - Class in org.jfree.chart.axis: A standard linear value axis, for SYMBOLIC values.
SymbolicAxis(String, String[]) - Constructor for class org.jfree.chart.axis.SymbolicAxis: Constructs a symbolic axis, using default attribute values where necessary.
SymbolicChartDemo1 - Class in org.jfree.chart.demo: An example of...
SymbolicChartDemo1(String) - Constructor for class org.jfree.chart.demo.SymbolicChartDemo1: A demonstration application.
SymbolicTickUnit - Class in org.jfree.chart.axis: A symbolic tick unit.
SymbolicTickUnit(double, String[]) - Constructor for class org.jfree.chart.axis.SymbolicTickUnit: Creates a new symbolic tick unit.
SymbolicXYItemLabelGenerator - Class in org.jfree.chart.labels: A standard item label generator for plots that use data from an XYDataset.
SymbolicXYItemLabelGenerator() - Constructor for class org.jfree.chart.labels.SymbolicXYItemLabelGenerator
SymbolicXYPlotDemo - Class in org.jfree.chart.demo: A demonstration application for the symbolic XY plots.
SymbolicXYPlotDemo() - Constructor for class org.jfree.chart.demo.SymbolicXYPlotDemo
SymbolicYPlotDemo - Class in org.jfree.chart.demo: A demonstration application for the symbolic axis plots.
SymbolicYPlotDemo() - Constructor for class org.jfree.chart.demo.SymbolicYPlotDemo
SYNONYMS - Variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.databases.transpath.TranspathGene
SYSTEM_ID - Static variable in class de.ipk_gatersleben.ag_nw.graffiti.plugins.ios.importers.xgmml.XGMMLConstants: System ID / DTD of XGMML
SystemAnalysis - Class in de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.threading
SystemAnalysis() - Constructor for class de.ipk_gatersleben.ag_nw.graffiti.plugins.misc.threading.SystemAnalysis
SystemInfo - Class in org
SystemInfo() - Constructor for class org.SystemInfo

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